Class Hierarchy

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## Hierarchy For All Packages

Package Hierarchies:
  uk.ac.bbk.dcs.automed.graph, uk.ac.bbk.dcs.automed.hdmstore, uk.ac.bbk.dcs.automed.qproc, uk.ac.bbk.dcs.automed.qproc.functions, uk.ac.bbk.dcs.automed.qproc.optimise, uk.ac.bbk.dcs.automed.wrappers, uk.ac.bbk.dcs.automed.xml, uk.ac.bbk.dcs.automed.xml.wrappers, uk.ac.ic.doc.automed, uk.ac.ic.doc.automed.editor, uk.ac.ic.doc.automed.editor.drawables, uk.ac.ic.doc.automed.gui, uk.ac.ic.doc.automed.matching, uk.ac.ic.doc.automed.matching.modules, uk.ac.ic.doc.automed.matching.relationships, uk.ac.ic.doc.automed.reps, uk.ac.ic.doc.automed.ssd, uk.ac.ic.doc.automed.templates, uk.ac.ic.doc.automed.templates.gui, uk.ac.ic.doc.automed.templates.wrapper, uk.ac.ic.doc.automed.tml, uk.ac.ic.doc.automed.wrappers, uk.ac.ic.doc.automed.wrappers.ssdfunctions

## Class Hierarchy

- class java.lang.Object
  - class uk.ac.ic.doc.automed.matching.modules.AbsoluteEuclideanClassifier (implements uk.ac.ic.doc.automed.matching.modules.Classifier)
  - class javax.swing.AbstractAction (implements javax.swing.Action, java.lang.Cloneable, java.io.Serializable)
    - class uk.ac.ic.doc.automed.editor.UserAction
  - class java.util.AbstractCollection (implements java.util.Collection)
    - class java.util.AbstractList (implements java.util.List)
      - class java.util.ArrayList (implements java.lang.Cloneable, java.util.List, java.util.RandomAccess, java.io.Serializable)
        - class uk.ac.bbk.dcs.automed.qproc.functions.ModifiedArray
  - class uk.ac.ic.doc.automed.matching.modules.AbstractModule
    - class uk.ac.ic.doc.automed.matching.modules.CheckExistenceModule
    - class uk.ac.ic.doc.automed.matching.modules.DataTypeModule
    - class uk.ac.ic.doc.automed.matching.modules.ElementNameModule
    - class uk.ac.ic.doc.automed.matching.modules.NaiveBayesModule
    - class uk.ac.ic.doc.automed.matching.modules.NumberInstancesModule
    - class uk.ac.ic.doc.automed.matching.modules.PrecisionModule
    - class uk.ac.ic.doc.automed.matching.modules.StatisticsModule
  - class uk.ac.ic.doc.automed.reps.AccessMethod
  - class uk.ac.ic.doc.automed.templates.gui.Accessories
  - class uk.ac.ic.doc.automed.matching.Aggregator
  - class uk.ac.bbk.dcs.automed.qproc.functions.And (implements uk.ac.bbk.dcs.automed.qproc.BuiltInFunction)
  - class uk.ac.bbk.dcs.automed.qproc.functions.Append (implements uk.ac.bbk.dcs.automed.qproc.BuiltInFunction)
  - class uk.ac.ic.doc.automed.gui.ArrowIcon (implements javax.swing.Icon, javax.swing.SwingConstants)
  - class uk.ac.bbk.dcs.automed.qproc.ASG
  - class uk.ac.ic.doc.automed.wrappers.AutoMedQuery
    - class uk.ac.ic.doc.automed.wrappers.SQLQuery
    - class uk.ac.ic.doc.automed.wrappers.YattaQuery
  - class uk.ac.ic.doc.automed.wrappers.AutoMedQueryToken
  - class uk.ac.ic.doc.automed.wrappers.AutoMedResult
    - class uk.ac.ic.doc.automed.wrappers.SQLResult
    - class uk.ac.ic.doc.automed.wrappers.YattaQueryResult
  - class uk.ac.ic.doc.automed.wrappers.AutoMedType
    - class uk.ac.ic.doc.automed.wrappers.AutoMedBoolean
    - class uk.ac.ic.doc.automed.wrappers.AutoMedFloat
    - class uk.ac.ic.doc.automed.wrappers.AutoMedInteger
    - class uk.ac.ic.doc.automed.wrappers.AutoMedString
    - class uk.ac.ic.doc.automed.wrappers.AutoMedTime
    - class uk.ac.ic.doc.automed.wrappers.AutoMedTuple
  - class uk.ac.ic.doc.automed.wrappers.AutoMedWrapper
    - class uk.ac.bbk.dcs.automed.hdmstore.HdmWrapper
    - class uk.ac.ic.doc.automed.wrappers.SQLWrapper
      - class uk.ac.ic.doc.automed.wrappers.OracleWrapper
      - class uk.ac.ic.doc.automed.wrappers.PostgresWrapper
      - class uk.ac.ic.doc.automed.wrappers.TransactSQLWrapper
    - class uk.ac.bbk.dcs.automed.xml.wrappers.XMLWrapper
      - class uk.ac.bbk.dcs.automed.xml.wrappers.DOMWrapper
      - class uk.ac.bbk.dcs.automed.xml.wrappers.SAXWrapper
    - class uk.ac.ic.doc.automed.wrappers.YattaWrapper
  - class uk.ac.ic.doc.automed.wrappers.AutoMedWrapperFactory
    - class uk.ac.bbk.dcs.automed.hdmstore.HdmWrapperFactory
    - class uk.ac.ic.doc.automed.wrappers.SQLWrapperFactory
      - class uk.ac.ic.doc.automed.wrappers.OracleWrapperFactory
      - class uk.ac.ic.doc.automed.wrappers.PostgresWrapperFactory
      - class uk.ac.ic.doc.automed.wrappers.SchemaMatchingSQLWrapperFactory
      - class uk.ac.ic.doc.automed.wrappers.TransactSQLWrapperFactory
    - class uk.ac.bbk.dcs.automed.xml.wrappers.XMLWrapperFactory
      - class uk.ac.bbk.dcs.automed.xml.wrappers.DOMWrapperFactory
      - class uk.ac.bbk.dcs.automed.xml.wrappers.SAXWrapperFactory
    - class uk.ac.ic.doc.automed.wrappers.YattaWrapperFactory
  - class uk.ac.bbk.dcs.automed.qproc.functions.Average (implements uk.ac.bbk.dcs.automed.qproc.BuiltInFunction)
  - class uk.ac.bbk.dcs.automed.qproc.functions.BagIntersect (implements uk.ac.bbk.dcs.automed.qproc.BuiltInFunction)
  - class uk.ac.ic.doc.automed.matching.BidirectionalDegree
  - class uk.ac.ic.doc.automed.matching.BidirectionalMap
  - class uk.ac.bbk.dcs.automed.qproc.functions.CallToWrapper (implements uk.ac.bbk.dcs.automed.qproc.BuiltInFunction)
  - class uk.ac.bbk.dcs.automed.qproc.Cell
  - class uk.ac.ic.doc.automed.matching.modules.Clusterer
    - class uk.ac.ic.doc.automed.matching.modules.JSomClusterer
  - class uk.ac.ic.doc.automed.matching.modules.ClustererClassifier
  - class uk.ac.ic.doc.automed.editor.CommandLineDriver
    - class uk.ac.ic.doc.automed.editor.Editor
  - class uk.ac.bbk.dcs.automed.qproc.functions.Comparisons
  - class java.awt.Component (implements java.awt.image.ImageObserver, java.awt.MenuContainer, java.io.Serializable)
    - class java.awt.Container
      - class javax.swing.JComponent (implements java.io.Serializable)
        - class javax.swing.AbstractButton (implements java.awt.ItemSelectable, javax.swing.SwingConstants)
          - class javax.swing.JButton (implements javax.accessibility.Accessible)
            - class uk.ac.ic.doc.automed.templates.gui.DrawingObject
        - class javax.swing.JInternalFrame (implements javax.accessibility.Accessible, javax.swing.RootPaneContainer, javax.swing.WindowConstants)
          - class uk.ac.ic.doc.automed.editor.Gui.EditorFrame (implements uk.ac.ic.doc.automed.reps.NetworkChangeListener, uk.ac.ic.doc.automed.reps.NetworksListener, uk.ac.ic.doc.automed.reps.SchemaChangeListener, uk.ac.ic.doc.automed.reps.SchemasListener)
        - class javax.swing.JLayeredPane (implements javax.accessibility.Accessible)
          - class javax.swing.JDesktopPane (implements javax.accessibility.Accessible)
            - class uk.ac.ic.doc.automed.editor.Gui
        - class javax.swing.JPanel (implements javax.accessibility.Accessible)
          - class uk.ac.ic.doc.automed.gui.ArgPane (implements java.awt.event.ActionListener)
          - class uk.ac.ic.doc.automed.editor.EditorPanel
          - class uk.ac.ic.doc.automed.templates.gui.InputForm
          - class uk.ac.ic.doc.automed.editor.PatternWritingTool.DynamicTree
          - class uk.ac.ic.doc.automed.gui.SchemaCanvas (implements uk.ac.ic.doc.automed.gui.GraphicCanvas, java.awt.event.MouseListener, java.awt.event.MouseMotionListener)
          - class uk.ac.ic.doc.automed.templates.gui.SchemaPanel (implements uk.ac.ic.doc.automed.templates.gui.InteractiveSchemaDisplay)
      - class java.awt.Window (implements javax.accessibility.Accessible)
        - class java.awt.Dialog
          - class javax.swing.JDialog (implements javax.accessibility.Accessible, javax.swing.RootPaneContainer, javax.swing.WindowConstants)
            - class uk.ac.ic.doc.automed.gui.ArgumentsDialog (implements java.awt.event.ActionListener)
            - class uk.ac.ic.doc.automed.gui.IntegrateDialog (implements java.awt.event.ActionListener)
            - class uk.ac.ic.doc.automed.gui.LoadDialog (implements java.awt.event.ActionListener)
            - class uk.ac.ic.doc.automed.templates.gui.LoadDialog (implements java.awt.event.ActionListener)
            - class uk.ac.ic.doc.automed.templates.gui.TemplateDialogueLauncher (implements java.awt.event.ActionListener, javax.swing.event.ListSelectionListener)
        - class java.awt.Frame (implements java.awt.MenuContainer)
          - class javax.swing.JFrame (implements javax.accessibility.Accessible, javax.swing.RootPaneContainer, javax.swing.WindowConstants)
            - class uk.ac.ic.doc.automed.editor.GUITool (implements java.awt.event.ActionListener)
              - class uk.ac.ic.doc.automed.editor.MatchingTool (implements java.awt.event.MouseListener, java.lang.Runnable)
              - class uk.ac.ic.doc.automed.editor.PathwayOptimiserTool (implements java.awt.event.ActionListener)
              - class uk.ac.ic.doc.automed.editor.ReportException
            - class uk.ac.ic.doc.automed.editor.PatternWritingTool
            - class uk.ac.ic.doc.automed.templates.gui.SchemaFrame (implements java.awt.event.ActionListener)
            - class uk.ac.ic.doc.automed.gui.SchemaTool (implements java.awt.event.ActionListener, javax.swing.event.ListSelectionListener)
        - class javax.swing.JWindow (implements javax.accessibility.Accessible, javax.swing.RootPaneContainer)
          - class uk.ac.ic.doc.automed.gui.ToolTip
  - class uk.ac.ic.doc.automed.templates.CompositeTransformation
  - class uk.ac.ic.doc.automed.templates.CompositeTransformationRecord
  - class uk.ac.bbk.dcs.automed.qproc.functions.Comprehension (implements uk.ac.bbk.dcs.automed.qproc.BuiltInFunction)
  - class uk.ac.ic.doc.automed.reps.Construct (implements java.util.Comparator)
    - class uk.ac.ic.doc.automed.reps.ConstructWithModelingProgram
  - class uk.ac.ic.doc.automed.reps.ConstructScheme
  - class uk.ac.bbk.dcs.automed.qproc.functions.Count (implements uk.ac.bbk.dcs.automed.qproc.BuiltInFunction)
  - class uk.ac.bbk.dcs.automed.hdmstore.Debug
  - class org.xml.sax.helpers.DefaultHandler (implements org.xml.sax.ContentHandler, org.xml.sax.DTDHandler, org.xml.sax.EntityResolver, org.xml.sax.ErrorHandler)
    - class uk.ac.bbk.dcs.automed.xml.wrappers.XMLDSSSAX
  - class uk.ac.ic.doc.automed.matching.DegreeCombinator
  - class uk.ac.bbk.dcs.automed.graph.DirectedGraph
  - class uk.ac.bbk.dcs.automed.graph.DirectedGraphNode
  - class uk.ac.bbk.dcs.automed.qproc.functions.Disjunction (implements uk.ac.bbk.dcs.automed.qproc.BuiltInFunction)
  - class uk.ac.bbk.dcs.automed.qproc.functions.Divide (implements uk.ac.bbk.dcs.automed.qproc.BuiltInFunction)
  - class uk.ac.bbk.dcs.automed.xml.DOMMaterialiser
  - class jsom.data.DoublePattern (implements jsom.data.Pattern)
    - class uk.ac.ic.doc.automed.matching.modules.Cluster
    - class uk.ac.ic.doc.automed.matching.modules.ElementVectorRepresentation
  - class uk.ac.ic.doc.automed.editor.DrawArc (implements uk.ac.ic.doc.automed.editor.DrawableArc)
    - class uk.ac.ic.doc.automed.editor.DefaultDrawConstraintArc
    - class uk.ac.ic.doc.automed.editor.DefaultDrawLinkArc
    - class uk.ac.ic.doc.automed.editor.DefaultDrawLinkNodalArc
    - class uk.ac.ic.doc.automed.editor.drawables.YattaDrawLinkNodalLink
    - class uk.ac.ic.doc.automed.editor.drawables.YattaDrawSequence
  - class uk.ac.ic.doc.automed.editor.DrawVertex (implements uk.ac.ic.doc.automed.editor.DrawableVertex)
    - class uk.ac.ic.doc.automed.editor.DefaultDrawConstraintVertex
    - class uk.ac.ic.doc.automed.editor.DefaultDrawLinkNodalVertex
    - class uk.ac.ic.doc.automed.editor.DefaultDrawLinkVertex
    - class uk.ac.ic.doc.automed.editor.DefaultDrawNodalVertex
  - class uk.ac.ic.doc.automed.DSR (implements uk.ac.ic.doc.automed.xml.XMLifyConstants)
    - class uk.ac.ic.doc.automed.DataSourceRepository
  - class uk.ac.bbk.dcs.automed.hdmstore.Edge
  - class uk.ac.bbk.dcs.automed.hdmstore.EdgeElement
  - class uk.ac.bbk.dcs.automed.qproc.Environment
  - class uk.ac.bbk.dcs.automed.qproc.EnvLexer (implements java_cup.runtime.Scanner)
  - class uk.ac.bbk.dcs.automed.qproc.EnvSym
  - class uk.ac.bbk.dcs.automed.qproc.functions.Equals (implements uk.ac.bbk.dcs.automed.qproc.BuiltInFunction)
  - class uk.ac.bbk.dcs.automed.qproc.Evaluator
  - class uk.ac.ic.doc.automed.matching.Filter
  - class uk.ac.bbk.dcs.automed.qproc.functions.First (implements uk.ac.bbk.dcs.automed.qproc.BuiltInFunction)
  - class uk.ac.bbk.dcs.automed.qproc.functions.Flatmap (implements uk.ac.bbk.dcs.automed.qproc.BuiltInFunction)
  - class uk.ac.bbk.dcs.automed.qproc.FLexer (implements java_cup.runtime.Scanner)
  - class uk.ac.bbk.dcs.automed.qproc.optimise.FoldFunction
  - class uk.ac.bbk.dcs.automed.qproc.optimise.FoldFunctionTable
    - class uk.ac.bbk.dcs.automed.qproc.optimise.StandardFoldFunctionTable
  - class uk.ac.bbk.dcs.automed.qproc.functions.Foldl (implements uk.ac.bbk.dcs.automed.qproc.BuiltInFunction)
  - class uk.ac.bbk.dcs.automed.qproc.optimise.FoldNilRule (implements uk.ac.bbk.dcs.automed.qproc.optimise.Rule)
  - class uk.ac.bbk.dcs.automed.qproc.functions.Foldr (implements uk.ac.bbk.dcs.automed.qproc.BuiltInFunction)
  - class uk.ac.bbk.dcs.automed.graph.Forest
  - class uk.ac.bbk.dcs.automed.qproc.FragmentProcessor
  - class uk.ac.bbk.dcs.automed.qproc.FSym
  - class uk.ac.bbk.dcs.automed.qproc.FunctionTable
    - class uk.ac.bbk.dcs.automed.qproc.StandardFunctionTable
      - class uk.ac.ic.doc.automed.wrappers.SSDFunctionTable
  - class uk.ac.ic.doc.automed.wrappers.ssdfunctions.generateId (implements uk.ac.bbk.dcs.automed.qproc.BuiltInFunction)
  - class uk.ac.ic.doc.automed.gui.GraphicSchemaObject (implements uk.ac.ic.doc.automed.gui.GraphicObject)
  - class uk.ac.bbk.dcs.automed.qproc.functions.Greater (implements uk.ac.bbk.dcs.automed.qproc.BuiltInFunction)
  - class uk.ac.bbk.dcs.automed.qproc.functions.GreaterEqual (implements uk.ac.bbk.dcs.automed.qproc.BuiltInFunction)
  - class uk.ac.bbk.dcs.automed.qproc.functions.Group (implements uk.ac.bbk.dcs.automed.qproc.BuiltInFunction)
    - class uk.ac.bbk.dcs.automed.qproc.functions.GroupCompute
  - class uk.ac.ic.doc.automed.reps.HDMConstraint
  - class uk.ac.ic.doc.automed.reps.HDMElement
    - class uk.ac.ic.doc.automed.reps.HDMEdge
    - class uk.ac.ic.doc.automed.reps.HDMNode
  - class uk.ac.ic.doc.automed.reps.HDMNetwork
  - class uk.ac.bbk.dcs.automed.hdmstore.HdmStore
  - class uk.ac.bbk.dcs.automed.hdmstore.HdmStoreCmd
  - class uk.ac.bbk.dcs.automed.qproc.functions.Id (implements uk.ac.bbk.dcs.automed.qproc.BuiltInFunction)
  - class uk.ac.bbk.dcs.automed.qproc.functions.If (implements uk.ac.bbk.dcs.automed.qproc.BuiltInFunction)
  - class uk.ac.ic.doc.automed.matching.Instance (implements java.util.Comparator)
  - class uk.ac.ic.doc.automed.matching.Integrator
    - class uk.ac.ic.doc.automed.matching.SQLIntegrator
  - class uk.ac.bbk.dcs.automed.qproc.functions.Less (implements uk.ac.bbk.dcs.automed.qproc.BuiltInFunction)
  - class uk.ac.bbk.dcs.automed.qproc.functions.LessEqual (implements uk.ac.bbk.dcs.automed.qproc.BuiltInFunction)
  - class uk.ac.bbk.dcs.automed.qproc.functions.Let (implements uk.ac.bbk.dcs.automed.qproc.BuiltInFunction)
  - class uk.ac.ic.doc.automed.gui.Line
  - class uk.ac.bbk.dcs.automed.qproc.functions.LoadListFromFile (implements uk.ac.bbk.dcs.automed.qproc.BuiltInFunction)
  - class uk.ac.bbk.dcs.automed.hdmstore.LowLevelWrapperHdm
  - class java_cup.runtime.lr_parser
    - class uk.ac.bbk.dcs.automed.qproc.EnvParser
    - class uk.ac.bbk.dcs.automed.qproc.QParser
  - class uk.ac.bbk.dcs.automed.qproc.functions.Map (implements uk.ac.bbk.dcs.automed.qproc.BuiltInFunction)
  - class uk.ac.ic.doc.automed.matching.modules.MapDisplay
  - class uk.ac.bbk.dcs.automed.qproc.functions.Max (implements uk.ac.bbk.dcs.automed.qproc.BuiltInFunction)
  - class uk.ac.ic.doc.automed.MDR
    - class uk.ac.ic.doc.automed.ModelDefinitionsRepository
  - class uk.ac.bbk.dcs.automed.qproc.functions.Member (implements uk.ac.bbk.dcs.automed.qproc.BuiltInFunction)
  - class uk.ac.bbk.dcs.automed.qproc.functions.Min (implements uk.ac.bbk.dcs.automed.qproc.BuiltInFunction)
  - class uk.ac.bbk.dcs.automed.qproc.functions.Minus (implements uk.ac.bbk.dcs.automed.qproc.BuiltInFunction)
  - class uk.ac.ic.doc.automed.reps.Model
  - class uk.ac.ic.doc.automed.reps.ModelingProgram
  - class uk.ac.ic.doc.automed.reps.ModelingStatement
  - class uk.ac.bbk.dcs.automed.qproc.functions.Monus (implements uk.ac.bbk.dcs.automed.qproc.BuiltInFunction)
  - class uk.ac.bbk.dcs.automed.qproc.functions.Multiply (implements uk.ac.bbk.dcs.automed.qproc.BuiltInFunction)
  - class uk.ac.ic.doc.automed.reps.Network (implements uk.ac.ic.doc.automed.editor.Positionable)
  - class uk.ac.ic.doc.automed.reps.NetworkChangeEvent
  - class uk.ac.bbk.dcs.automed.qproc.optimise.NilOptimiser (implements uk.ac.bbk.dcs.automed.qproc.optimise.Optimiser)
  - class uk.ac.ic.doc.automed.reps.Node
  - class uk.ac.bbk.dcs.automed.xml.NodeUtility
  - class uk.ac.bbk.dcs.automed.qproc.functions.Not (implements uk.ac.bbk.dcs.automed.qproc.BuiltInFunction)
  - class uk.ac.bbk.dcs.automed.qproc.functions.NotEqual (implements uk.ac.bbk.dcs.automed.qproc.BuiltInFunction)
  - class uk.ac.bbk.dcs.automed.qproc.functions.Or (implements uk.ac.bbk.dcs.automed.qproc.BuiltInFunction)
  - class uk.ac.ic.doc.automed.reps.Pathway
  - class uk.ac.ic.doc.automed.tml.PathwayOptimiser
  - class uk.ac.ic.doc.automed.ssd.Pattern
  - class uk.ac.bbk.dcs.automed.qproc.optimise.PatternRule (implements uk.ac.bbk.dcs.automed.qproc.optimise.Rule)
  - class uk.ac.ic.doc.automed.editor.PinBoardLayout (implements java.awt.LayoutManager)
  - class uk.ac.bbk.dcs.automed.qproc.functions.Plus (implements uk.ac.bbk.dcs.automed.qproc.BuiltInFunction)
  - class uk.ac.ic.doc.automed.reps.Protocol
  - class uk.ac.bbk.dcs.automed.qproc.QLexer (implements java_cup.runtime.Scanner)
  - class uk.ac.bbk.dcs.automed.qproc.QSym
  - class uk.ac.bbk.dcs.automed.qproc.QueryReformulator
  - class java.awt.geom.RectangularShape (implements java.lang.Cloneable, java.awt.Shape)
    - class java.awt.geom.Rectangle2D
      - class java.awt.Rectangle (implements java.io.Serializable, java.awt.Shape)
        - class uk.ac.ic.doc.automed.gui.Arc (implements uk.ac.ic.doc.automed.gui.SchemaShape)
        - class uk.ac.ic.doc.automed.gui.Box (implements uk.ac.ic.doc.automed.gui.SchemaShape)
        - class uk.ac.ic.doc.automed.gui.Rhombus (implements uk.ac.ic.doc.automed.gui.SchemaShape)
  - class uk.ac.ic.doc.automed.matching.RelationshipExtractor
    - class uk.ac.ic.doc.automed.matching.SQLRelationshipExtractor
  - class uk.ac.ic.doc.automed.matching.modules.RelativeEuclideanClassifier (implements uk.ac.ic.doc.automed.matching.modules.Classifier)
  - class uk.ac.bbk.dcs.automed.qproc.ReservedTokens
  - class uk.ac.ic.doc.automed.templates.gui.Run
  - class uk.ac.ic.doc.automed.templates.RuntimeArgument
  - class uk.ac.ic.doc.automed.templates.RuntimeArgumentSequence
  - class uk.ac.ic.doc.automed.reps.Schema (implements uk.ac.ic.doc.automed.editor.Positionable)
  - class uk.ac.ic.doc.automed.reps.SchemaChangeEvent
  - class uk.ac.ic.doc.automed.matching.SchemaElement
  - class uk.ac.ic.doc.automed.matching.SchemaElementPair
    - class uk.ac.ic.doc.automed.matching.SchemaElementPairRelationship
    - class uk.ac.ic.doc.automed.matching.SimilarSchemaElementPair
  - class uk.ac.ic.doc.automed.gui.SchemaManager (implements uk.ac.ic.doc.automed.gui.GraphicManager)
  - class uk.ac.ic.doc.automed.reps.SchemaMapGenerator
  - class uk.ac.ic.doc.automed.SchemaModelingRepository
  - class uk.ac.ic.doc.automed.reps.SchemaObject (implements java.lang.Comparable, java.util.Comparator, uk.ac.ic.doc.automed.editor.Positionable)
  - class uk.ac.ic.doc.automed.reps.Scheme
  - class uk.ac.bbk.dcs.automed.qproc.SchemeInfo
  - class uk.ac.ic.doc.automed.wrappers.SchemeInstances
  - class uk.ac.ic.doc.automed.wrappers.SchemeQuery
  - class uk.ac.bbk.dcs.automed.qproc.functions.Second (implements uk.ac.bbk.dcs.automed.qproc.BuiltInFunction)
  - class uk.ac.ic.doc.automed.matching.relationships.SemanticRelationship
    - class uk.ac.ic.doc.automed.matching.relationships.Disjointness
    - class uk.ac.ic.doc.automed.matching.relationships.Equivalence
    - class uk.ac.ic.doc.automed.matching.relationships.Incompatibility
    - class uk.ac.ic.doc.automed.matching.relationships.Overlapness
    - class uk.ac.ic.doc.automed.matching.relationships.Subsumption
      - class uk.ac.ic.doc.automed.matching.relationships.Subset
      - class uk.ac.ic.doc.automed.matching.relationships.Superset
  - class uk.ac.ic.doc.automed.matching.modules.SimilarCluster
  - class uk.ac.bbk.dcs.automed.qproc.functions.Single (implements uk.ac.bbk.dcs.automed.qproc.BuiltInFunction)
  - class uk.ac.bbk.dcs.automed.qproc.functions.Sort (implements uk.ac.bbk.dcs.automed.qproc.BuiltInFunction)
    - class uk.ac.bbk.dcs.automed.qproc.functions.Difference
  - class uk.ac.bbk.dcs.automed.qproc.functions.SortDistinct (implements uk.ac.bbk.dcs.automed.qproc.BuiltInFunction)
    - class uk.ac.bbk.dcs.automed.qproc.functions.SetUnion
  - class uk.ac.bbk.dcs.automed.hdmstore.Span
  - class uk.ac.ic.doc.automed.ssd.SSDFormat
  - class uk.ac.ic.doc.automed.ssd.SSDPattern
  - class uk.ac.ic.doc.automed.SSMDR
  - class uk.ac.ic.doc.automed.templates.Statement
  - class uk.ac.ic.doc.automed.templates.StatementArgumentDefinition
  - class uk.ac.ic.doc.automed.templates.StatementExecution
  - class uk.ac.ic.doc.automed.STR
    - class uk.ac.ic.doc.automed.SchemaTransformationRepository
  - class java.io.StreamTokenizer
    - class uk.ac.ic.doc.automed.reps.Syntax.Tokenizer
  - class uk.ac.ic.doc.automed.STRMethodTest
  - class uk.ac.bbk.dcs.automed.qproc.functions.SubBag (implements uk.ac.bbk.dcs.automed.qproc.BuiltInFunction)
  - class uk.ac.bbk.dcs.automed.qproc.functions.Sum (implements uk.ac.bbk.dcs.automed.qproc.BuiltInFunction)
  - class uk.ac.ic.doc.automed.reps.Syntax
  - class uk.ac.ic.doc.automed.editor.Syntax
  - class uk.ac.ic.doc.automed.reps.Syntax.Token
  - class uk.ac.ic.doc.automed.templates.wrapper.TArgument
    - class uk.ac.ic.doc.automed.templates.wrapper.TStatementArgument
    - class uk.ac.ic.doc.automed.templates.wrapper.TTemplateArgument
  - class uk.ac.ic.doc.automed.templates.wrapper.TConstants
  - class uk.ac.ic.doc.automed.templates.TemplateArgument
  - class uk.ac.ic.doc.automed.templates.TemplateArgumentSequence
  - class uk.ac.ic.doc.automed.templates.wrapper.TemplateCompilerSimulator
    - class uk.ac.ic.doc.automed.templates.wrapper.DefaultTemplate
  - class uk.ac.ic.doc.automed.templates.wrapper.TemplateCompilerSimulator.CONSTRUCT
  - class uk.ac.ic.doc.automed.templates.wrapper.TemplateCompilerSimulator.ITEM
    - class uk.ac.ic.doc.automed.templates.wrapper.TemplateCompilerSimulator.LIST
      - class uk.ac.ic.doc.automed.templates.wrapper.TemplateCompilerSimulator.OBJECTLIST
      - class uk.ac.ic.doc.automed.templates.wrapper.TemplateCompilerSimulator.STRINGLIST
        - class uk.ac.ic.doc.automed.templates.wrapper.TemplateCompilerSimulator.CONSTRAINTSLIST
        - class uk.ac.ic.doc.automed.templates.wrapper.TemplateCompilerSimulator.FUNCTIONLIST
        - class uk.ac.ic.doc.automed.templates.wrapper.TemplateCompilerSimulator.NAMELIST
    - class uk.ac.ic.doc.automed.templates.wrapper.TemplateCompilerSimulator.OBJECT
    - class uk.ac.ic.doc.automed.templates.wrapper.TemplateCompilerSimulator.STRING
      - class uk.ac.ic.doc.automed.templates.wrapper.TemplateCompilerSimulator.CONSTRAINTS
      - class uk.ac.ic.doc.automed.templates.wrapper.TemplateCompilerSimulator.FUNCTION
      - class uk.ac.ic.doc.automed.templates.wrapper.TemplateCompilerSimulator.NAME
  - class uk.ac.ic.doc.automed.templates.wrapper.TemplateCompilerSimulator.SCHEME
  - class uk.ac.ic.doc.automed.TemplateExecutionRepository
  - class uk.ac.ic.doc.automed.templates.gui.TemplateInputDialogue (implements uk.ac.ic.doc.automed.templates.gui.DialogueManager)
  - class uk.ac.ic.doc.automed.TemplateTransformationRepository
    - class uk.ac.ic.doc.automed.TemplateTransformationRepositoryExtension
  - class uk.ac.ic.doc.automed.TemplateTransformationSyntaxRepository
  - class uk.ac.ic.doc.automed.tml.TempPathway
  - class java.lang.Throwable (implements java.io.Serializable)
    - class java.lang.Exception
      - class uk.ac.ic.doc.automed.AutoMedException
        - class uk.ac.ic.doc.automed.reps.AutoRepException
          - class uk.ac.ic.doc.automed.reps.TypeMismatchException
        - class uk.ac.ic.doc.automed.reps.BadSchemaException
        - class uk.ac.ic.doc.automed.editor.ConfigException
          - class uk.ac.ic.doc.automed.editor.SemanticException
          - class uk.ac.ic.doc.automed.editor.SyntaxException
          - class uk.ac.ic.doc.automed.editor.UnexpectedTokenException
        - class uk.ac.ic.doc.automed.reps.ConstructSchemeSyntaxException
        - class uk.ac.ic.doc.automed.wrappers.DataSourceException
        - class uk.ac.ic.doc.automed.DSRException
          - class uk.ac.ic.doc.automed.DataSourceRepositoryException
        - class uk.ac.bbk.dcs.automed.hdmstore.HdmStoreException
        - class uk.ac.ic.doc.automed.reps.IllegalOperationException
        - class uk.ac.ic.doc.automed.IntegrityException
        - class uk.ac.ic.doc.automed.MDRException
          - class uk.ac.ic.doc.automed.ModelDefinitionsRepositoryException
        - class uk.ac.ic.doc.automed.NotFoundException
        - class uk.ac.ic.doc.automed.tml.NotOptimisableException
        - class uk.ac.ic.doc.automed.RepositoryAccessException
        - class uk.ac.ic.doc.automed.SchemaModelingRepositoryException
        - class uk.ac.ic.doc.automed.reps.SchemasNotIdenticalException
        - class uk.ac.ic.doc.automed.SSMDRException
        - class uk.ac.ic.doc.automed.STRException
          - class uk.ac.ic.doc.automed.SchemaTransformationRepositoryException
        - class uk.ac.ic.doc.automed.reps.SyntaxException
          - class uk.ac.ic.doc.automed.reps.UnexpectedTokenException
        - class uk.ac.ic.doc.automed.templates.wrapper.TemplateDefinitionException
        - class uk.ac.ic.doc.automed.TemplateExecutionRepositoryException
        - class uk.ac.ic.doc.automed.TemplateTransformationRepositoryException
        - class uk.ac.ic.doc.automed.TemplateTransformationSyntaxRepositoryException
      - class uk.ac.ic.doc.automed.editor.CommandLineException
        - class uk.ac.ic.doc.automed.editor.EditorException
      - class uk.ac.ic.doc.automed.gui.GUIException
      - class uk.ac.ic.doc.automed.matching.IntegratorException
      - class uk.ac.ic.doc.automed.matching.InvalidElementException
      - class uk.ac.ic.doc.automed.matching.RelationshipConflictException
      - class uk.ac.ic.doc.automed.matching.RelationshipExtractorException
      - class java.lang.RuntimeException
        - class uk.ac.ic.doc.automed.InconsistentException
        - class uk.ac.ic.doc.automed.NotImplementedException
      - class uk.ac.ic.doc.automed.matching.UninstantiatedElementException
      - class uk.ac.ic.doc.automed.matching.UninstantiatedException
      - class uk.ac.bbk.dcs.automed.xml.XMLException
        - class uk.ac.bbk.dcs.automed.xml.XMLNotFoundException
  - class uk.ac.ic.doc.automed.tml.TML
    - class uk.ac.ic.doc.automed.tml.TempTML
  - class uk.ac.ic.doc.automed.reps.Transformation (implements java.lang.Comparable)
  - class uk.ac.ic.doc.automed.templates.TransformationArgumentDefinition
  - class uk.ac.bbk.dcs.automed.wrappers.Translator
    - class uk.ac.bbk.dcs.automed.wrappers.SQLTranslator
  - class uk.ac.bbk.dcs.automed.graph.TreeNode
  - class uk.ac.ic.doc.automed.templates.wrapper.TStatement
    - class uk.ac.ic.doc.automed.templates.wrapper.CreateListStatement
    - class uk.ac.ic.doc.automed.templates.wrapper.DefineStringStatement
    - class uk.ac.ic.doc.automed.templates.wrapper.ForeachStatement
    - class uk.ac.ic.doc.automed.templates.wrapper.IndexListStatement
    - class uk.ac.ic.doc.automed.templates.wrapper.InsertingStatement
      - class uk.ac.ic.doc.automed.templates.wrapper.AddStatement
      - class uk.ac.ic.doc.automed.templates.wrapper.ExtendStatement
    - class uk.ac.ic.doc.automed.templates.wrapper.RemovingStatement
      - class uk.ac.ic.doc.automed.templates.wrapper.ContractStatement
      - class uk.ac.ic.doc.automed.templates.wrapper.DeleteStatement
    - class uk.ac.ic.doc.automed.templates.wrapper.RenameStatement
    - class uk.ac.ic.doc.automed.templates.wrapper.SchemeListStatement
  - class uk.ac.ic.doc.automed.templates.wrapper.TTemplate
  - class uk.ac.ic.doc.automed.templates.wrapper.TTemplateInputArgument
  - class uk.ac.ic.doc.automed.templates.wrapper.TTemplateInputArgumentList
  - class uk.ac.ic.doc.automed.editor.UserActionClass
  - class uk.ac.ic.doc.automed.editor.UserActionResult
  - class uk.ac.ic.doc.automed.Util
  - class uk.ac.ic.doc.automed.matching.Util
  - class uk.ac.bbk.dcs.automed.qproc.functions.Utilities
  - class uk.ac.ic.doc.automed.reps.Utility
  - class uk.ac.ic.doc.automed.matching.modules.Vectors (implements jsom.data.Data)
  - class uk.ac.bbk.dcs.automed.xml.XMLConstants
  - class uk.ac.bbk.dcs.automed.xml.wrappers.XMLDSSDOM
  - class uk.ac.bbk.dcs.automed.xml.XMLModel
  - class uk.ac.bbk.dcs.automed.xml.XMLTransformer

## Interface Hierarchy

- interface uk.ac.bbk.dcs.automed.qproc.BuiltInFunction
- interface uk.ac.ic.doc.automed.matching.modules.Classifier
- interface uk.ac.ic.doc.automed.matching.modules.ComparableExact
- interface uk.ac.ic.doc.automed.Constants
- interface uk.ac.ic.doc.automed.templates.gui.DialogueLauncher
- interface uk.ac.ic.doc.automed.templates.gui.DialogueManager
- interface uk.ac.ic.doc.automed.editor.Drawable
  - interface uk.ac.ic.doc.automed.editor.DrawableArc
  - interface uk.ac.ic.doc.automed.editor.DrawableVertex
- interface uk.ac.ic.doc.automed.templates.gui.InteractiveSchemaDisplay
- interface uk.ac.ic.doc.automed.reps.NetworkChangeListener
- interface uk.ac.ic.doc.automed.reps.NetworksListener
- interface uk.ac.bbk.dcs.automed.qproc.optimise.Optimiser
- interface uk.ac.ic.doc.automed.editor.Positionable
- interface uk.ac.bbk.dcs.automed.qproc.optimise.Rule
- interface uk.ac.ic.doc.automed.reps.SchemaChangeListener
- interface uk.ac.ic.doc.automed.reps.SchemasListener

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