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# Serialized Form

Package uk.ac.bbk.dcs.automed.graph

Class uk.ac.bbk.dcs.automed.graph.GraphException extends java.lang.Exception implements Serializable

serialVersionUID: 1L

Package uk.ac.bbk.dcs.automed.hdmstore

Class uk.ac.bbk.dcs.automed.hdmstore.HdmStoreException extends AutoMedException implements Serializable

Package uk.ac.bbk.dcs.automed.qproc.functions

Class uk.ac.bbk.dcs.automed.qproc.functions.ModifiedArray extends java.util.ArrayList implements Serializable

Package uk.ac.bbk.dcs.automed.xml

Class uk.ac.bbk.dcs.automed.xml.XMLException extends java.lang.Exception implements Serializable

serialVersionUID: 1L

Class uk.ac.bbk.dcs.automed.xml.XMLNotFoundException extends XMLException implements Serializable

serialVersionUID: 1L

Package uk.ac.ic.doc.automed

Class uk.ac.ic.doc.automed.AutoMedException extends java.lang.Exception implements Serializable

Class uk.ac.ic.doc.automed.DataSourceRepositoryException extends DSRException implements Serializable

Class uk.ac.ic.doc.automed.DSRException extends AutoMedException implements Serializable

Class uk.ac.ic.doc.automed.InconsistentException extends java.lang.RuntimeException implements Serializable

Class uk.ac.ic.doc.automed.IntegrityException extends AutoMedException implements Serializable

Serialized Fields

### className

    java.lang.String className

### operation

    int operation

### objectID

    int objectID

### objectID2

    int objectID2

Class uk.ac.ic.doc.automed.MDRException extends AutoMedException implements Serializable

Class uk.ac.ic.doc.automed.ModelDefinitionsRepositoryException extends MDRException implements Serializable

Class uk.ac.ic.doc.automed.NotFoundException extends AutoMedException implements Serializable

Class uk.ac.ic.doc.automed.NotImplementedException extends java.lang.RuntimeException implements Serializable

Class uk.ac.ic.doc.automed.RepositoryAccessException extends AutoMedException implements Serializable

Serialized Fields

### cause

    java.lang.Exception cause

Class uk.ac.ic.doc.automed.SchemaModelingRepositoryException extends AutoMedException implements Serializable

Class uk.ac.ic.doc.automed.SchemaTransformationRepositoryException extends STRException implements Serializable

Class uk.ac.ic.doc.automed.SSMDRException extends AutoMedException implements Serializable

Class uk.ac.ic.doc.automed.STRException extends AutoMedException implements Serializable

Class uk.ac.ic.doc.automed.TemplateExecutionRepositoryException extends AutoMedException implements Serializable

Class uk.ac.ic.doc.automed.TemplateTransformationRepositoryException extends AutoMedException implements Serializable

Class uk.ac.ic.doc.automed.TemplateTransformationSyntaxRepositoryException extends AutoMedException implements Serializable

Package uk.ac.ic.doc.automed.editor

Class uk.ac.ic.doc.automed.editor.CommandLineException extends java.lang.Exception implements Serializable

Class uk.ac.ic.doc.automed.editor.ConfigException extends AutoMedException implements Serializable

Class uk.ac.ic.doc.automed.editor.EditorException extends CommandLineException implements Serializable

Class uk.ac.ic.doc.automed.editor.EditorPanel extends javax.swing.JPanel implements Serializable

Serialized Fields

### vertexComponent

    java.util.Map<K,V> vertexComponent

### adjacents

    java.util.Map<K,V> adjacents

### vertices

    java.util.Map<K,V> vertices

### edges

    java.util.Map<K,V> edges

### selectOffset

    int selectOffset

### dragging

    boolean dragging

### justActivated

    boolean justActivated

### fm

    java.awt.FontMetrics fm

### partialView

    boolean partialView

### ef

    Gui.EditorFrame ef

### gui

    Gui gui

### group

    java.util.HashSet<E> group

### groupBox

    java.awt.Rectangle groupBox

### mouseOffsetX

    int mouseOffsetX

### mouseOffsetY

    int mouseOffsetY

### mouseStartX

    int mouseStartX

### mouseStartY

    int mouseStartY

Class uk.ac.ic.doc.automed.editor.Gui extends javax.swing.JDesktopPane implements Serializable

Serialized Fields

### frame

    javax.swing.JFrame frame

### importMenuItem

    javax.swing.JMenuItem importMenuItem

### exitMenuItem

    javax.swing.JMenuItem exitMenuItem

### neMenuItem

    javax.swing.JMenuItem neMenuItem

### fileMenu

    javax.swing.JMenu fileMenu

### toolMenu

    javax.swing.JMenu toolMenu

### p2pMenu

    javax.swing.JMenu p2pMenu

### optionsMenu

    javax.swing.JMenu optionsMenu

### p2pLoginMenuItem

    javax.swing.JMenuItem p2pLoginMenuItem

### p2pDirectoryMenuItem

    javax.swing.JMenuItem p2pDirectoryMenuItem

### p2pCloseMenuItem

    javax.swing.JMenuItem p2pCloseMenuItem

### p2pQueryCacheMenuItem

    javax.swing.JMenuItem p2pQueryCacheMenuItem

### menuBar

    javax.swing.JMenuBar menuBar

### ep

    Gui.EditorFrame ep

### standalone

    boolean standalone

### hiddenModels

    java.util.WeakHashMap<K,V> hiddenModels

### hiddenConstructs

    java.util.WeakHashMap<K,V> hiddenConstructs

### hiddenPositionables

    java.util.WeakHashMap<K,V> hiddenPositionables

### peerApp

    PeerApplication peerApp

### peer

    AutoMedPeer peer

### editorFrames

    java.util.HashMap<K,V> editorFrames

### rootActions

    java.util.List<E> rootActions

### networkActions

    java.util.List<E> networkActions

### schemaActions

    java.util.List<E> schemaActions

### schemaObjectActions

    java.util.List<E> schemaObjectActions

### selected

    java.util.List<E> selected

### pathSel

    boolean[] pathSel

### lastSelectedDir

    java.io.File lastSelectedDir

### extensionFileFilter

    DotExtensionFileFilter extensionFileFilter

Class uk.ac.ic.doc.automed.editor.Gui.EditorFrame extends javax.swing.JInternalFrame implements Serializable

Serialized Fields

### rootPane

    javax.swing.JRootPane rootPane

### contentPane

    java.awt.Container contentPane

### glassPane

    java.awt.Component glassPane

### editorPanel

    EditorPanel editorPanel

### target

    Positionable target

### parentTarget

    Positionable parentTarget

### selected

    java.util.List<E> selected

### pathSel

    boolean[] pathSel

### rootActions

    java.util.List<E> rootActions

### networkActions

    java.util.List<E> networkActions

### schemaActions

    java.util.List<E> schemaActions

### schemaObjectActions

    java.util.List<E> schemaObjectActions

### rootMenu

    javax.swing.JPopupMenu rootMenu

### networkMenu

    javax.swing.JPopupMenu networkMenu

### schemaMenu

    javax.swing.JPopupMenu schemaMenu

### schemaObjectMenu

    javax.swing.JPopupMenu schemaObjectMenu

### frameTitle

    java.lang.String frameTitle

### frameSubTitle

    java.lang.String frameSubTitle

Class uk.ac.ic.doc.automed.editor.GUITool extends javax.swing.JFrame implements Serializable

Serialized Fields

### window

    java.awt.Container window

### wLayout

    java.awt.GridBagLayout wLayout

### line

    int line

Class uk.ac.ic.doc.automed.editor.IQLTool extends GUITool implements Serializable

Serialized Fields

### iqlArea

    javax.swing.JTextArea iqlArea

### resultArea

    javax.swing.JTextArea resultArea

### asgArea

    javax.swing.JTextArea asgArea

### reformulatedArea

    javax.swing.JTextArea reformulatedArea

### processedArea

    javax.swing.JTextArea processedArea

### loArea

    javax.swing.JTextArea loArea

### poArea

    javax.swing.JTextArea poArea

### executeButton

    javax.swing.JButton executeButton

### currentQuery

    javax.swing.JLabel currentQuery

### queryNo

    int queryNo

### queryBuffer

    java.util.ArrayList<E> queryBuffer

### backButton

    javax.swing.JButton backButton

### forwardButton

    javax.swing.JButton forwardButton

### queryLanguageModeBox

    javax.swing.JComboBox queryLanguageModeBox

### extSchemasInUse

    javax.swing.JList extSchemasInUse

### querySchema

    Schema querySchema

### extSchemas

    Schema[] extSchemas

### qr

    QueryReformulator qr

### qrSchemas

    Schema[] qrSchemas

### fp

    FragmentProcessor fp

### ft

    FunctionTable ft

### ssdft

    FunctionTable ssdft

### qa

    QueryAnnotator qa

### lo

    LogicalOptimiser lo

### po

    PhysicalOptimiser po

### chkOptimised

    javax.swing.JCheckBox chkOptimised

### optimisedQuery

    boolean optimisedQuery

### e

    Evaluator e

### ssde

    Evaluator ssde

### qrc

    java.lang.Class<T> qrc

### qrcons

    java.lang.reflect.Constructor<T> qrcons

Class uk.ac.ic.doc.automed.editor.MatchingTool extends GUITool implements Serializable

Serialized Fields

### elementsTables1

    SchemaElement[] elementsTables1

### elementsColumns1

    SchemaElement[] elementsColumns1

### elementsColumnEdges1

    SchemaElement[] elementsColumnEdges1

### elementsTables2

    SchemaElement[] elementsTables2

### elementsColumns2

    SchemaElement[] elementsColumns2

### elementsColumnEdges2

    SchemaElement[] elementsColumnEdges2

### discoveredRels

    SchemaElementPairRelationship[] discoveredRels

### schemas

    Schema[] schemas

### integratedSchema

    Schema integratedSchema

### model

    uk.ac.ic.doc.automed.editor.MatchingTool.MyTableModel model

### jtable

    javax.swing.JTable jtable

### modules

    java.util.ArrayList<E> modules

### nodalItems

    java.util.ArrayList<E> nodalItems

### linknodalAtomicItems

    java.util.ArrayList<E> linknodalAtomicItems

### linknodalNonatomicItems

    java.util.ArrayList<E> linknodalNonatomicItems

### nodalModules

    java.util.ArrayList<E> nodalModules

### linknodalAtomicModules

    java.util.ArrayList<E> linknodalAtomicModules

### linknodalNonatomicModules

    java.util.ArrayList<E> linknodalNonatomicModules

### trueValue

    java.lang.Boolean trueValue

### falseValue

    java.lang.Boolean falseValue

### nodalModulesResults

    java.util.ArrayList<E> nodalModulesResults

### linknodalAtomicModulesResults

    java.util.ArrayList<E> linknodalAtomicModulesResults

### linknodalNonAtomicModulesResults

    java.util.ArrayList<E> linknodalNonAtomicModulesResults

### nodalModulesViewed

    java.util.ArrayList<E> nodalModulesViewed

### linknodalAtomicModulesViewed

    java.util.ArrayList<E> linknodalAtomicModulesViewed

### linknodalNonatomicModulesViewed

    java.util.ArrayList<E> linknodalNonatomicModulesViewed

### nodalModulesPanel

    java.util.ArrayList<E> nodalModulesPanel

### linknodalAtomicModulesPanel

    java.util.ArrayList<E> linknodalAtomicModulesPanel

### linknodalNonatomicModulesPanel

    java.util.ArrayList<E> linknodalNonatomicModulesPanel

### validateItem

    javax.swing.JMenuItem validateItem

### exitItem

    javax.swing.JMenuItem exitItem

### addRelationshipItem

    javax.swing.JMenuItem addRelationshipItem

### matchSchemasItem

    javax.swing.JMenuItem matchSchemasItem

### outputTextArea

    javax.swing.JTextArea outputTextArea

### comboBoxRenderer

    uk.ac.ic.doc.automed.editor.MatchingTool.ComboBoxRenderer comboBoxRenderer

### renderer

    uk.ac.ic.doc.automed.editor.MatchingTool.MyDefaultTableCellRenderer renderer

### results

    javax.swing.JTabbedPane results

### finalRelsPanel

    javax.swing.JScrollPane finalRelsPanel

### waitCursor

    java.awt.Cursor waitCursor

### normalCursor

    java.awt.Cursor normalCursor

### STOP

    boolean STOP

### RELATIONSHIPS_DISCOVERED

    boolean RELATIONSHIPS_DISCOVERED

### RELATIONSHIPS_ARE_BEING_DISCOVERED

    boolean RELATIONSHIPS_ARE_BEING_DISCOVERED

### SCHEMAS_INTEGRATED

    boolean SCHEMAS_INTEGRATED

### selectElementString

    java.lang.String selectElementString

Class uk.ac.ic.doc.automed.editor.PathwayOptimiserTool extends GUITool implements Serializable

Serialized Fields

### transTable

    javax.swing.JTable transTable

### option1

    javax.swing.JButton option1

### option2

    javax.swing.JButton option2

### cancelButton

    javax.swing.JButton cancelButton

### tempP

    TempPathway tempP

### pathwayIsOptimisable

    boolean pathwayIsOptimisable

### pathwayIsWellformed

    boolean pathwayIsWellformed

### notWellformedMsg

    java.lang.String notWellformedMsg

Class uk.ac.ic.doc.automed.editor.PatternWritingTool extends javax.swing.JFrame implements Serializable

Serialized Fields

### yatta

    Model yatta

### rootnode

    Construct rootnode

### yattanode

    Construct yattanode

### sequence

    Construct sequence

### ROOT_CONSTRUCT

    java.lang.String ROOT_CONSTRUCT

### YATTANODE_CONSTRUCT

    java.lang.String YATTANODE_CONSTRUCT

### SEQUENCE_CONSTRUCT

    java.lang.String SEQUENCE_CONSTRUCT

### windowname

    java.lang.String windowname

### gbLayout

    java.awt.GridBagLayout gbLayout

### ssdText

    javax.swing.JTextArea ssdText

### ssdfText

    javax.swing.JTextField ssdfText

### parentCombo

    javax.swing.JComboBox parentCombo

### sobjName

    javax.swing.JTextField sobjName

### typeText

    javax.swing.JTextField typeText

### orderCombo

    javax.swing.JComboBox orderCombo

### fullScheme

    javax.swing.JTextArea fullScheme

### sequenceInfo

    javax.swing.JTextArea sequenceInfo

### sobjText

    javax.swing.JTextArea sobjText

### pnameText

    javax.swing.JTextField pnameText

### patternText

    javax.swing.JTextField patternText

### groupText

    javax.swing.JTextField groupText

### addButton1

    javax.swing.JButton addButton1

### removeButton1

    javax.swing.JButton removeButton1

### addButton

    javax.swing.JButton addButton

### removeButton

    javax.swing.JButton removeButton

### editButton

    javax.swing.JButton editButton

### helpButton

    javax.swing.JButton helpButton

### matchButton

    javax.swing.JButton matchButton

### browseButton

    javax.swing.JButton browseButton

### saveButton

    javax.swing.JButton saveButton

### cancelButton

    javax.swing.JButton cancelButton

### nextWindow

    javax.swing.JButton nextWindow

### complex

    javax.swing.JRadioButton complex

### atomic

    javax.swing.JRadioButton atomic

### one

    javax.swing.JRadioButton one

### onezero

    javax.swing.JRadioButton onezero

### gtone

    javax.swing.JRadioButton gtone

### gtzero

    javax.swing.JRadioButton gtzero

### ctype

    java.lang.String[] ctype

### complexList

    javax.swing.JComboBox complexList

### atype

    java.lang.String[] atype

### atomicList

    javax.swing.JComboBox atomicList

### any

    javax.swing.JRadioButton any

### before

    javax.swing.JRadioButton before

### after

    javax.swing.JRadioButton after

### key

    javax.swing.JRadioButton key

### nonkey

    javax.swing.JRadioButton nonkey

### treePanel

    PatternWritingTool.DynamicTree treePanel

### name_node

    java.util.HashMap<K,V> name_node

### treePanelPW

    PatternWritingTool.DynamicTree treePanelPW

### fullN_keyN

    java.util.HashMap<K,V> fullN_keyN

### ssdModel

    uk.ac.ic.doc.automed.editor.PatternWritingTool.MyTableModel ssdModel

### ssdTable

    javax.swing.JTable ssdTable

### ssdrowCount

    int ssdrowCount

### selectedRow

    int selectedRow

### ssd

    java.lang.String ssd

### url

    java.lang.String url

### schema

    java.lang.String schema

### selectedType

    java.lang.String selectedType

### selectedParent

    java.lang.String selectedParent

### parentType

    java.lang.String parentType

### selectedOrder

    java.lang.String selectedOrder

### selectedCard

    java.lang.String selectedCard

### selectedKey

    java.lang.String selectedKey

### selectedSequence

    java.lang.String selectedSequence

### s

    Schema s

### sobj

    SchemaObject sobj

### ssdf

    SSDFormat ssdf

### ssdfName

    java.lang.String ssdfName

### SOS

    java.util.Vector<E> SOS

### SPS

    java.util.Vector<E> SPS

### node_background_colour

    java.awt.Color node_background_colour

### root_background_colour

    java.awt.Color root_background_colour

### seq_background_colour

    java.awt.Color seq_background_colour

### text_colour

    java.awt.Color text_colour

### text_background_colour

    java.awt.Color text_background_colour

### orderedParent

    java.util.Vector<E> orderedParent

### pname

    java.lang.String pname

### pattern

    java.lang.String pattern

### myHighlightPainter

    javax.swing.text.Highlighter.HighlightPainter myHighlightPainter

### basePainter

    javax.swing.text.Highlighter.HighlightPainter basePainter

Class uk.ac.ic.doc.automed.editor.PatternWritingTool.DynamicTree extends javax.swing.JPanel implements Serializable

Serialized Fields

### rootNode

    javax.swing.tree.DefaultMutableTreeNode rootNode

### treeModel

    javax.swing.tree.DefaultTreeModel treeModel

### tree

    javax.swing.JTree tree

### toolkit

    java.awt.Toolkit toolkit

Class uk.ac.ic.doc.automed.editor.ReportException extends GUITool implements Serializable

Serialized Fields

### e

    java.lang.Exception e

### msgText

    java.lang.String msgText

### msg

    javax.swing.JTextArea msg

### eText

    javax.swing.JTextArea eText

### summary

    javax.swing.JTextArea summary

### details

    javax.swing.JTextArea details

### ste

    java.lang.StackTraceElement[] ste

Class uk.ac.ic.doc.automed.editor.SemanticException extends ConfigException implements Serializable

Class uk.ac.ic.doc.automed.editor.SyntaxException extends ConfigException implements Serializable

Class uk.ac.ic.doc.automed.editor.UnexpectedTokenException extends ConfigException implements Serializable

Class uk.ac.ic.doc.automed.editor.UserAction extends javax.swing.AbstractAction implements Serializable

Class uk.ac.ic.doc.automed.editor.XMLSchemaEditor extends GUITool implements Serializable

Serialized Fields

### ds

    TreeDragSource ds

### dt

    TreeDropTarget dt

### treeModel

    javax.swing.tree.DefaultTreeModel treeModel

### leadSelection

    javax.swing.tree.DefaultMutableTreeNode leadSelection

### rootNode

    javax.swing.tree.DefaultMutableTreeNode rootNode

### doc

    Document doc

  The XSDOM doc representing the XML document we read in

### selectedPaths

    javax.swing.tree.TreePath[] selectedPaths

  The paths in the tree that have been selected

### schema

    Schema schema

  The Automed schema

### sourceSchema

    Schema sourceSchema

  The source schema. This will keep the type hierarchy for this schema

### filename

    java.lang.String filename

  The name of the XML Schema file to process

### schemaName

    java.lang.String schemaName

  The name of the schema we're processing

### e

    java.util.Enumeration<E> e

  The enumeration of elements in the Jtree

### xsw

    XMLSchemaWrapper xsw

  The wrapper

### aboutMenuItem

    javax.swing.JMenuItem aboutMenuItem

### contentMenuItem

    javax.swing.JMenuItem contentMenuItem

### copyMenuItem

    javax.swing.JMenuItem copyMenuItem

### cutMenuItem

    javax.swing.JMenuItem cutMenuItem

### deleteMenuItem

    javax.swing.JMenuItem deleteMenuItem

### desktopPane

    javax.swing.JDesktopPane desktopPane

### editMenu

    javax.swing.JMenu editMenu

### fileMenu

    javax.swing.JMenu fileMenu

### helpMenu

    javax.swing.JMenu helpMenu

### jInternalFrame1

    javax.swing.JInternalFrame jInternalFrame1

### jScrollPane1

    javax.swing.JScrollPane jScrollPane1

### jSplitPane1

    javax.swing.JSplitPane jSplitPane1

### leftTree

    javax.swing.JTree leftTree

### menuBar

    javax.swing.JMenuBar menuBar

### linkMenuItem

    javax.swing.JMenuItem linkMenuItem

### openDbMenuItem

    javax.swing.JMenuItem openDbMenuItem

### ouputRelationalMenuItem

    javax.swing.JMenuItem ouputRelationalMenuItem

### rightScrollPane

    javax.swing.JScrollPane rightScrollPane

### textArea

    javax.swing.JTextArea textArea

### updateMenuItem

    javax.swing.JMenuItem updateMenuItem

### transformMenuItem

    javax.swing.JMenuItem transformMenuItem

### fileChooser

    javax.swing.JFileChooser fileChooser

### fileChooserOutput

    javax.swing.JFileChooser fileChooserOutput

### fileFilter

    XMLFileFilter fileFilter

Package uk.ac.ic.doc.automed.gui

Class uk.ac.ic.doc.automed.gui.Arc extends java.awt.Rectangle implements Serializable

Serialized Fields

### style

    java.lang.String style

### bgColour

    java.lang.String bgColour

### fgColour

    java.lang.String fgColour

### text

    java.lang.String text

### fontName

    java.lang.String fontName

### fontSize

    int fontSize

### fontStyle

    int fontStyle

### fontColour

    java.lang.String fontColour

### textLocation

    java.lang.String textLocation

### location

    java.awt.Point location

### arcWidth

    int arcWidth

### arcHeight

    int arcHeight

### startAngle

    int startAngle

### endAngle

    int endAngle

### graphics

    java.awt.Graphics graphics

### textPosition

    java.awt.Point textPosition

### font

    java.awt.Font font

### arc2d

    java.awt.geom.Arc2D.Double arc2d

### assigned

    java.awt.Point assigned

### west

    java.awt.Point west

### south

    java.awt.Point south

### north

    java.awt.Point north

### east

    java.awt.Point east

Class uk.ac.ic.doc.automed.gui.ArgPane extends javax.swing.JPanel implements Serializable

Serialized Fields

### argPane

    ArgPane argPane

### inputPane

    javax.swing.JPanel inputPane

### buttonsPane

    javax.swing.JPanel buttonsPane

### textField

    javax.swing.JTextField textField

### extend

    javax.swing.JButton extend

### leftArrow

    javax.swing.JButton leftArrow

### rightArrow

    javax.swing.JButton rightArrow

### contruct

    javax.swing.JButton contruct

### set

    javax.swing.JButton set

### argDescriptions

    java.lang.String[] argDescriptions

### argPos

    int argPos

### argValues

    java.util.Vector<E> argValues

### extendable

    boolean extendable

Class uk.ac.ic.doc.automed.gui.ArgumentsDialog extends javax.swing.JDialog implements Serializable

Serialized Fields

### argPane

    ArgPane argPane

Class uk.ac.ic.doc.automed.gui.Box extends java.awt.Rectangle implements Serializable

Serialized Fields

### style

    java.lang.String style

### bgColour

    java.lang.String bgColour

### fgColour

    java.lang.String fgColour

### text

    java.lang.String text

### fontName

    java.lang.String fontName

### fontSize

    int fontSize

### fontStyle

    int fontStyle

### fontColour

    java.lang.String fontColour

### textLocation

    java.lang.String textLocation

### rounded

    boolean rounded

### arcWidth

    int arcWidth

### arcHeight

    int arcHeight

### layout

    java.lang.String layout

### layoutAxis

    java.lang.String layoutAxis

### graphics

    java.awt.Graphics graphics

### textPosition

    java.awt.Point textPosition

### font

    java.awt.Font font

Class uk.ac.ic.doc.automed.gui.GUIException extends java.lang.Exception implements Serializable

Serialized Fields

### cause

    java.lang.Exception cause

Class uk.ac.ic.doc.automed.gui.IntegrateDialog extends javax.swing.JDialog implements Serializable

Serialized Fields

### ok

    javax.swing.JButton ok

### cancel

    javax.swing.JButton cancel

### schema1

    javax.swing.JTextField schema1

### schema2

    javax.swing.JTextField schema2

### waitCursor

    java.awt.Cursor waitCursor

### defaultCursor

    java.awt.Cursor defaultCursor

Class uk.ac.ic.doc.automed.gui.LoadDialog extends javax.swing.JDialog implements Serializable

Serialized Fields

### list

    javax.swing.JList list

### value

    java.lang.String value

### cancelButton

    javax.swing.JButton cancelButton

### owner

    java.awt.Component owner

Class uk.ac.ic.doc.automed.gui.Rhombus extends java.awt.Rectangle implements Serializable

Serialized Fields

### style

    java.lang.String style

### bgColour

    java.lang.String bgColour

### fgColour

    java.lang.String fgColour

### text

    java.lang.String text

### fontName

    java.lang.String fontName

### fontSize

    int fontSize

### fontStyle

    int fontStyle

### fontColour

    java.lang.String fontColour

### textLocation

    java.lang.String textLocation

### extend

    int extend

### graphics

    java.awt.Graphics graphics

### textPosition

    java.awt.Point textPosition

### font

    java.awt.Font font

### polygon

    java.awt.Polygon polygon

### assigned

    java.awt.Point assigned

Class uk.ac.ic.doc.automed.gui.SchemaCanvas extends javax.swing.JPanel implements Serializable

Serialized Fields

### scrollpane

    javax.swing.JScrollPane scrollpane

### objectFocused

    uk.ac.ic.doc.automed.gui.GraphicObject objectFocused

### pointDifference

    java.awt.Point pointDifference

### manager

    uk.ac.ic.doc.automed.gui.GraphicManager manager

### tooltip

    ToolTip tooltip

Class uk.ac.ic.doc.automed.gui.SchemaTool extends javax.swing.JFrame implements Serializable

Serialized Fields

### leftCanvas

    SchemaCanvas leftCanvas

### rightCanvas

    SchemaCanvas rightCanvas

### load

    javax.swing.JMenuItem load

### exit

    javax.swing.JMenuItem exit

### integrate

    javax.swing.JMenuItem integrate

### loadDialog

    LoadDialog loadDialog

### compound

    javax.swing.border.Border compound

### left

    javax.swing.JPanel left

### right

    javax.swing.JPanel right

### list

    javax.swing.JList list

### optionPane

    javax.swing.JOptionPane optionPane

### infoDialog

    javax.swing.JDialog infoDialog

### integrateDialog

    javax.swing.JDialog integrateDialog

### execute

    javax.swing.JButton execute

### argDialog

    ArgumentsDialog argDialog

### transformation

    CompositeTransformation transformation

### waitCursor

    java.awt.Cursor waitCursor

### defaultCursor

    java.awt.Cursor defaultCursor

### argumentSequences

    java.util.Vector<E> argumentSequences

Class uk.ac.ic.doc.automed.gui.ToolTip extends javax.swing.JWindow implements Serializable

Serialized Fields

### text

    java.lang.String text

Package uk.ac.ic.doc.automed.matching

Class uk.ac.ic.doc.automed.matching.IntegratorException extends java.lang.Exception implements Serializable

Class uk.ac.ic.doc.automed.matching.InvalidElementException extends java.lang.Exception implements Serializable

Class uk.ac.ic.doc.automed.matching.RelationshipConflictException extends java.lang.Exception implements Serializable

Class uk.ac.ic.doc.automed.matching.RelationshipExtractorException extends java.lang.Exception implements Serializable

Class uk.ac.ic.doc.automed.matching.UninstantiatedElementException extends java.lang.Exception implements Serializable

Class uk.ac.ic.doc.automed.matching.UninstantiatedException extends java.lang.Exception implements Serializable

Package uk.ac.ic.doc.automed.p2p

Class uk.ac.ic.doc.automed.p2p.ErrorReplyException extends UnsuccessfulReplyException implements Serializable

Class uk.ac.ic.doc.automed.p2p.FailedOperationException extends java.lang.Exception implements Serializable

Class uk.ac.ic.doc.automed.p2p.FailReplyException extends UnsuccessfulReplyException implements Serializable

Class uk.ac.ic.doc.automed.p2p.HandlerNotFoundException extends AutoMedException implements Serializable

Class uk.ac.ic.doc.automed.p2p.IllegalReplyException extends UnsuccessfulReplyException implements Serializable

Class uk.ac.ic.doc.automed.p2p.P2PException extends java.lang.Exception implements Serializable

Class uk.ac.ic.doc.automed.p2p.UnsuccessfulReplyException extends java.lang.Exception implements Serializable

Serialized Fields

### context

    java.lang.String context

Package uk.ac.ic.doc.automed.p2p.communication

Class uk.ac.ic.doc.automed.p2p.communication.CommunicationException extends AutoMedException implements Serializable

Package uk.ac.ic.doc.automed.p2p.gui

Class uk.ac.ic.doc.automed.p2p.gui.AllSchemasFrame extends MainFrame implements Serializable

Serialized Fields

### schemaInfo

    javax.swing.JButton schemaInfo

### getSchema

    javax.swing.JButton getSchema

### advertisePath

    javax.swing.JButton advertisePath

### publishSchema

    javax.swing.JButton publishSchema

Class uk.ac.ic.doc.automed.p2p.gui.CacheViewerFrame extends GUITool implements Serializable

Serialized Fields

### _cacheObj

    uk.ac.ic.doc.automed.util.cache.Cacheable _cacheObj

### _cacheTable

    javax.swing.JTable _cacheTable

Class uk.ac.ic.doc.automed.p2p.gui.InputDialog extends javax.swing.JDialog implements Serializable

Serialized Fields

### fields

    java.util.Map<K,V> fields

### title

    java.lang.String title

### okButton

    javax.swing.JButton okButton

### cancelButton

    javax.swing.JButton cancelButton

### ok

    boolean ok

### application

    PeerApplication application

Class uk.ac.ic.doc.automed.p2p.gui.LoginFrame extends javax.swing.JFrame implements Serializable

Serialized Fields

### nameField

    javax.swing.JTextField nameField

### joinButton

    javax.swing.JButton joinButton

### loginButton

    javax.swing.JButton loginButton

### cancelButton

    javax.swing.JButton cancelButton

### application

    PeerApplication application

### stateHandler

    PeerStateHandler stateHandler

Class uk.ac.ic.doc.automed.p2p.gui.MainFrame extends javax.swing.JFrame implements Serializable

Serialized Fields

### application

    PeerApplication application

### myButtons

    javax.swing.JButton[] myButtons

### refreshButton

    javax.swing.JButton refreshButton

### myTable

    PeerTable myTable

### tablePanel

    TablePanel tablePanel

Class uk.ac.ic.doc.automed.p2p.gui.MySchemasFrame extends MainFrame implements Serializable

Serialized Fields

### schemaInfo

    javax.swing.JButton schemaInfo

### showAll

    javax.swing.JButton showAll

### publishSchema

    javax.swing.JButton publishSchema

### launchGui

    javax.swing.JButton launchGui

Class uk.ac.ic.doc.automed.p2p.gui.PeerTable extends javax.swing.JTable implements Serializable

Class uk.ac.ic.doc.automed.p2p.gui.PeerTableModel extends javax.swing.table.AbstractTableModel implements Serializable

Serialized Fields

### columnNames

    java.lang.String[] columnNames

### type

    int type

### objects

    java.util.List<E> objects

Class uk.ac.ic.doc.automed.p2p.gui.SchemaInfoFrame extends MainFrame implements Serializable

Serialized Fields

### getPathway

    javax.swing.JButton getPathway

### getSourcePath

    javax.swing.JButton getSourcePath

### query

    javax.swing.JButton query

### wrap

    javax.swing.JButton wrap

### broker

    javax.swing.JButton broker

Class uk.ac.ic.doc.automed.p2p.gui.TablePanel extends javax.swing.JPanel implements Serializable

Package uk.ac.ic.doc.automed.p2p.state

Class uk.ac.ic.doc.automed.p2p.state.StateChangedException extends AutoMedException implements Serializable

Package uk.ac.ic.doc.automed.p2p.tree

Class uk.ac.ic.doc.automed.p2p.tree.AutoMedTreeException extends java.lang.Exception implements Serializable

Package uk.ac.ic.doc.automed.reps

Class uk.ac.ic.doc.automed.reps.AutoRepException extends AutoMedException implements Serializable

Serialized Fields

### cause

    java.lang.Exception cause

Class uk.ac.ic.doc.automed.reps.BadSchemaException extends AutoMedException implements Serializable

Serialized Fields

### badSchema

    Schema badSchema

Class uk.ac.ic.doc.automed.reps.ConstructSchemeSyntaxException extends AutoMedException implements Serializable

Class uk.ac.ic.doc.automed.reps.IllegalOperationException extends AutoMedException implements Serializable

Class uk.ac.ic.doc.automed.reps.SchemasNotIdenticalException extends AutoMedException implements Serializable

Serialized Fields

### fromSchema

    Schema fromSchema

### toSchema

    Schema toSchema

### fromObjects

    SchemaObject[] fromObjects

### toObjects

    SchemaObject[] toObjects

Class uk.ac.ic.doc.automed.reps.SyntaxException extends AutoMedException implements Serializable

Class uk.ac.ic.doc.automed.reps.TypeMismatchException extends AutoRepException implements Serializable

Class uk.ac.ic.doc.automed.reps.UnexpectedTokenException extends SyntaxException implements Serializable

Package uk.ac.ic.doc.automed.templates.gui

Class uk.ac.ic.doc.automed.templates.gui.DrawingObject extends javax.swing.JButton implements Serializable

Serialized Fields

### cid

    int cid

### obid

    int obid

### highlighted

    boolean highlighted

### enabled

    boolean enabled

### xPos

    int xPos

### yPos

    int yPos

### name

    java.lang.String name

### nameDimensions

    java.awt.Dimension nameDimensions

### justDragged

    boolean justDragged

### parent

    SchemaPanel parent

### mySchemaObject

    SchemaObject mySchemaObject

### schemeObjects

    SchemaObject[] schemeObjects

Class uk.ac.ic.doc.automed.templates.gui.InputForm extends javax.swing.JPanel implements Serializable

Serialized Fields

### isEditable

    boolean isEditable

### isList

    boolean isList

### listSize

    int listSize

### inputItems

    java.util.Vector<E> inputItems

### myArgument

    TTemplateInputArgument myArgument

### currentlyFocusedItem

    uk.ac.ic.doc.automed.templates.gui.InputItem currentlyFocusedItem

### observer

    java.awt.Component observer

### dialogueManager

    TemplateInputDialogue dialogueManager

### topToolbars

    javax.swing.JPanel topToolbars

### popUpButton

    javax.swing.JButton popUpButton

### listButton

    javax.swing.JButton listButton

### singleButton

    javax.swing.JButton singleButton

### breakButton

    javax.swing.JButton breakButton

### isSetButton

    javax.swing.JButton isSetButton

Class uk.ac.ic.doc.automed.templates.gui.LoadDialog extends javax.swing.JDialog implements Serializable

Serialized Fields

### list

    javax.swing.JList list

### value

    java.lang.String value

### cancelButton

    javax.swing.JButton cancelButton

### owner

    java.awt.Component owner

Class uk.ac.ic.doc.automed.templates.gui.SchemaFrame extends javax.swing.JFrame implements Serializable

Serialized Fields

### load

    javax.swing.JMenuItem load

### execute

    javax.swing.JMenuItem execute

### exit

    javax.swing.JMenuItem exit

### backButton

    javax.swing.JButton backButton

### frontButton

    javax.swing.JButton frontButton

### executeButton

    javax.swing.JButton executeButton

### schemaPanelScroller

    javax.swing.JScrollPane schemaPanelScroller

### transformationsScroller

    javax.swing.JScrollPane transformationsScroller

### mainPanel

    javax.swing.JPanel mainPanel

### loadedSchemas

    java.util.Vector<E> loadedSchemas

### panelsOfSchemas

    java.util.Hashtable<K,V> panelsOfSchemas

### currentlyDisplayedSchema

    int currentlyDisplayedSchema

Class uk.ac.ic.doc.automed.templates.gui.SchemaPanel extends javax.swing.JPanel implements Serializable

Serialized Fields

### objects

    java.util.Vector<E> objects

### currentSID

    int currentSID

### observer

    java.awt.Component observer

### schemaName

    java.lang.String schemaName

### dialogueManager

    DialogueManager dialogueManager

### objectMap

    java.util.Hashtable<K,V> objectMap

### loadedSchema

    Schema loadedSchema

Class uk.ac.ic.doc.automed.templates.gui.TemplateDialogueLauncher extends javax.swing.JDialog implements Serializable

Serialized Fields

### owner

    java.awt.Frame owner

### list

    javax.swing.JList list

### listScroller

    javax.swing.JScrollPane listScroller

### descriptionScroller

    javax.swing.JScrollPane descriptionScroller

### descriptionPane

    javax.swing.JTextPane descriptionPane

### okButton

    javax.swing.JButton okButton

### cancelButton

    javax.swing.JButton cancelButton

### names

    java.lang.String[] names

### descriptions

    java.util.Hashtable<K,V> descriptions

### transIds

    java.util.Hashtable<K,V> transIds

### selectedTransId

    java.lang.Integer selectedTransId

Package uk.ac.ic.doc.automed.templates.wrapper

Class uk.ac.ic.doc.automed.templates.wrapper.TemplateDefinitionException extends AutoMedException implements Serializable

Serialized Fields

### cause

    java.lang.Exception cause

Package uk.ac.ic.doc.automed.tml

Class uk.ac.ic.doc.automed.tml.NotOptimisableException extends AutoMedException implements Serializable

Package uk.ac.ic.doc.automed.wrappers

Class uk.ac.ic.doc.automed.wrappers.DataSourceException extends AutoMedException implements Serializable

Package uk.ac.ic.doc.automed.xmlschema.tree

Class uk.ac.ic.doc.automed.xmlschema.tree.IconAndTipRenderer extends javax.swing.JLabel implements Serializable

Serialized Fields

### backColor

    java.awt.Color backColor

### openIcon

    javax.swing.Icon openIcon

### closedIcon

    javax.swing.Icon closedIcon

### leafIcon

    javax.swing.Icon leafIcon

### tipText

    java.lang.String tipText

Package uk.ac.ic.doc.automed.xmlschema.xsdomobject

Class uk.ac.ic.doc.automed.xmlschema.xsdomobject.Attribute extends XSDOMObject implements Serializable

Class uk.ac.ic.doc.automed.xmlschema.xsdomobject.ComplexType extends XSDOMObject implements Serializable

Serialized Fields

### children

    java.util.ArrayList<E> children

  ArrayList of elements in this complexType

### childAttributes

    java.util.ArrayList<E> childAttributes

  ArrayList of attributes in this complexType

### primaryKey

    XSDOMObject primaryKey

  The primary key of this complexType. Null if there isn't one

### baseType

    java.lang.String baseType

  If this is a derived type it will have a base type

Class uk.ac.ic.doc.automed.xmlschema.xsdomobject.Element extends XSDOMObject implements Serializable

Class uk.ac.ic.doc.automed.xmlschema.xsdomobject.XSDOMObject extends java.lang.Object implements Serializable

Serialization Methods

### readObject

    private void readObject(java.io.ObjectInputStream in)
                     throws java.io.IOException,
                            java.lang.ClassNotFoundException

  Throws:
    `java.io.IOException`
    `java.lang.ClassNotFoundException`

### writeObject

    private void writeObject(java.io.ObjectOutputStream out)
                      throws java.io.IOException

  Throws:
    `java.io.IOException`

Serialized Fields

### name

    java.lang.String name

  Object name

### type

    java.lang.String type

  The type of the object. All objects must have a type

### icon

    java.lang.String icon

  The icon for this object in the Schema Editor

### minOccurs

    int minOccurs

  The minOccurs and maxOccurs value for this object. Defaults to unbounded

### maxOccurs

    boolean maxOccurs

### keyref

    java.lang.String keyref

  Any keyref there might be

### p

    javax.swing.tree.TreePath p

### flavors

    java.awt.datatransfer.DataFlavor[] flavors

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