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I am currently a Software Developer at Google. 

Before starting at Google, I worked as a post-doctoral researcher in the Calit2 Department of University of California, Irvine working in collaboration with Natasa PrzuljAthina Markopoulou and Carter T. Butts

I completed my Ph.D. studies  in the Department of ComputingImperial College London. My main area of research is Computational Network Analysis. I have been developing Network Topology Comparison and Modelling techniques, and applying these techniques for the analysis of Economic, Biological, Social, and Technological networks.

I got my M.Sc. and B.Sc. degrees from the Department of Computer EngineeringMiddle East Technical University. I worked as a teaching/research assistant at METU during my M.Sc. studies (between 2008 - 2010).




JOURNAL PAPERS:

1) Ömer Nebil Yaveroğlu, Tijana Milenkovic, Nataša Pržulj. “Proper Evaluation of Alignment-free Network Comparison Methods”, Bioinformatics, 31(16):2697-2704, 24 March 2015.

2) Ömer Nebil Yaveroğlu, Sean M. Fitzhugh, Maciej Kurant, Athina Markopoulou, Carter T. Butts, Nataša Pržulj"ergm.graphlets: a package for ERG modelling based on graphlet properties"Journal of Statistical Software, Vol. 65, Issue 12, June 2015.

3) Darren Davis, Ömer Nebil Yaveroğlu, Noël Malod-Dognin, Aleksandar Stojmirovic, Nataša Pržulj. “Topology-Function Conservation in Protein-Protein Interaction Networks”, Bioinformatics, 31(10):1632-1639, 11 January 2015.

4) Mark D. Donnell, Ömer Nebil Yaveroğlu, Brett A. Schmerl, Nicolangelo Iannella, Lawrence M. Ward. “Motif-Role Fingerprints: the Building-Blocks of Motifs, Clustering Coefficients and Transitivities in Directed Networks”, PLoS ONE, 9 (12): e114503, doi: 10.1371/journal.pone.0114503, 8 December 2014.

5) Ömer Nebil YaveroğluNoël Malod-Dognin, Darren Davis, Zoran Levnajic, Vuk Janjic, Rasa Karapandza, Aleksandar Stojmirovic, Nataša PržuljRevealing the Hidden Language of Complex Networks", Scientific Reports, 4:4547, doi:10.1038/srep04547, 1 April 2014.    —  Highlighted on Imperial College News.



CONFERENCE PAPERS:

1) Ömer Nebil Yaveroglu, Tolga Can. "Prediction of protein-protein interactions using statistical data analysis methods", 4th International Symphosium on Health Informatics and Bioinformatics (HIBIT'2009), 16-17 April 2009 , Ankara / TURKEY



TALKS:

1) “Exploring a Network based on the Interplay Between Node Roles”, 10 June 2015, Middle East Technical University, Ankara, Turkey.

2) “Topology-Function Conservation in Protein-Protein Interaction Networks”, NetSci’2015, 3 June 2015, Zaragoza, Spain. 

3) “Proper Evaluation of Alignment-free Network Comparison Methods”, Network-enabled Wisdom for the Personalized Medicine of the Complex Diseases, 2 June 2015, Zaragoza, Spain

4) “Exploring a Network based on the Interplay Between Node Roles”, 3 April 2015, Salk Institute, La Jolla, California, United States.

5) “Topology-Function Conservation in Protein-Protein Interaction Networks”, IDA-NET’2014, 6 September 2014, Strasbourg, France.

6) “Revealing the Hidden Language of Complex Networks”, NetSci’2014, 4 June 2014, UC-Berkeley, San Francisco, California, United States.



POSTER PRESENTATIONS:

1) “Proper Evaluation of Alignment-free Network Comparison Methods”, NetBio SIG’2015, 10 July 2015, Dublin, Ireland. ( Won the Best Poster Award )

2) “Proper Evaluation of Alignment-free Network Comparison Methods”, ISMB-ECCB’2015, 12-14 July 2015, Dublin, Ireland.

3) “Topology-Function Conservation in Protein-Protein Interaction Networks”, ECCB’2014, 8-10 September 2014, Strasbourg, France.

4) “ergm.graphlets: a package for ERG modelling based on graphlet properties”, NetSci’2014, 2-6 June 2014, San Francisco, U.S.A.



THESES:

Ph.D.: "Graphlet Correlations for Network Comparison and Modelling: World Trade Network Example", Supervisor: Assoc. Prof. Natasa Przulj, Awarded Date: 1 February 2014. Submitted to: Imperial College London.

M.Sc.: "Identification of Functionally Orthologous Protein Groups in different Species based on Protein Network Alignment", Supervisor: Assoc. Prof. Tolga Can, Awarded Date: 16 September 2010. Submitted to: Middle East Technical University.



TEACHING EXPERIENCE:

Imperial College London:

1) Introduction to Bioinformatics/Biological Networks: (Winter 2013) (Winter 2012) (Winter 2011)

2) C/C++ Programming: (Summer 2011)

Middle East Technical University:

1) C Programming (Spring 2009, Spring 2010)

2) Computer Graphics 2 (Spring 2010)

3) Introduction to Computer Graphics (Fall 2009, Fall 2008)

4) Database Management Systems (Fall 2009)

5) Advanced Graphics and User Interfaces (Spring 2008)

6) Design and Analysis of Algorithms (Spring 2009)