Other/older ideas:

• The egalitarian effect of search engines Authors: Santo Fortunato, Alessandro Flammini, Filippo Menczer, Alessandro Vespignani. ArXiv
• Watkins, E. R. and Nicole, D. A. (2005) Version Control in Online Software Repositories. Proceedings of the 2005 International Conference on Software Engineering Research and Practice II pp. 550-556. here
• A multi-algorithm, multi-timescale method for cell simulation, K. Takahashi, K. Kaizu, B. Hu, M. Tomita, Bioinformatics, 20(4), 538-546, (2004).here
• The Small World of Software Reverse Engineering by Ahmed E. Hassan and Richard C. Holt pdf slides (from here).
• Daniel Berend and Luba Sapir "Between the expert and majority rules" Adv. in Appl. Probab. 35, no. 4 (2003), 941.960 ProjectEuclid.
• Competitive algorithms for the dynamic selection of component implementations D. M. Yellin. IBM Systems Journal Vol. 42, No. 1, 2003 pdf
• R.W. Irving, Matching medical students to pairs of hospitals: a new variation on a well-known theme. Springer
• On the 802.11 Turbulence of Nintendo DS and Sony PSP Hand-held Network Games. Mark Claypool. And/or other papers from NetGames 2005 For example this one below,
• Fairness in Dead-Reckoning based Distributed Multi-Player Games Sudhir Aggarwal, Hemant Banavar (Florida State University, USA), Sarit Mukherjee, Sampath Rangarajan (Bell Labs -- Lucent Technologies, USA)
• M. Bosse, P. Newman, J. Leonard, M. Soika, W. Feiten, and S. Teller, "An Atlas framework for scalable mapping," in International Conference on Robotics and Automation, vol. 2, September 2003.
• Aickelin U, Bentley P, Cayzer S, Kim J and McLeod J (2003): 'Danger Theory: The Link between AIS and IDS?', Proceedings ICARIS-2003, 2nd International Conference on Artificial Immune Systems, LNCS 2787, pp 147-155, Springer-Verlag, Edinburgh, UK pdf. See also artificial immune systems and recommender systems, http://www.cs.nott.ac.uk/~uxa/#publications
• Brian Kirby, Jason Campbell, Burak Aksak, Padmanabhan Pillai, James Hoburg, Todd C. Mowry, Seth Copen Goldstein: Catoms: Moving Robots Without Moving Parts. AAAI 2005: 1730-1731
• "Quantum Malware", by L.-A. Wu and D.A. Lidar, Preprint: pdf
• Shonali Krishnaswamy, Seng Wai Loke: Estimating Computation Times of Data-Intensive Applications. IEEE Distributed Systems Online, Volume 5, Number 4, April 2004
• Something by Atau Tanaka, for example Tanaka, A., Tokui, N., and Momeni, A. Facilitating Collective Musical Creativity. Proceedings of ACM Multimedia, 2005. pdf.
• P-Y. Oudeyer, F. Kaplan, V. V. Hafner and A. Whyte The Playground Experiment: Task-Independent Development of a Curious Robot. In Bank, D. and Meeden, L., editor, Proceedings of the AAAI Spring Symposium on Developmental Robotics, 2005, pages 42-47, Stanford, California, 2005.pdf
• Bharath Kumar Mohan: The Best Nurturers in Computer Science Research. 2005 SIAM International Data Mining Conference Techreport version
• Gene Expression Programming: a New Adaptive Algorithm for Solving Problems Candida Ferreira. Apparently published Complex Systems.
• Fourier Slice Photography, Ren Ng et al, SIGGRAPH 2005 pdf
• C. H. Lee, A. Varshney, and David Jacobs. Mesh Saliency. ACM SIGGRAPH 2005. 18MB pdf.
• Peter Pietzuch, Jonathan Ledlie, Jeffrey Shneidman, Mema Roussopoulos, Matt Welsh, Margo Seltzer, "Network-Aware Operator Placement for Stream-Processing Systems", PDF, To Appear in ICDE 2006, April, 2006.
• Frame and Metaphor in Political Games. Bogost, Ian. DiGRA2005 Word
• Palsberg, J., Krishnaswamy, S., Minseok, K., Ma, D., Shao, Q., and Zhang, Y. (2000). Experience with software watermarking. In Proceedings of the 16th Annual Computer Security Applications Conference, ACSAC '00, pages 308-- 316. IEEE. citeseer
• Xen and the Art of Repeated Research Bryan Clark, Todd Deshane, Eli Dow, Stephen Evanchik, Matthew Finlayson, Jason Herne, and Jeanna Neefe Matthews, Clarkson University. here.
• Karl Krukow, Mogens Nielsen, and Vladimiro Sassone. A Framework for Concrete Reputation-Systems. pdf
• Railway Delay Management: Exploring Its Algorithmic Complexity Michael Gatto, Bjorn Glaus, Riko Jacob, Leon Peeters, and Peter Widmayer. SWAT04.
• Buldas, A., Laud, P., and Lipmaa, H. Eliminating Counterevidence with Applications to Accountable Certicate Management. Jounal of Computer Security (2002). To appear. http://citeseer.ist.psu.edu/buldas02eliminating.html (most influential Estonian contribution to Computer Science, apparently)
• Michael S. Mahoney, "WHAT MAKES HISTORY?" here. Mahoney is consulting historian to the ACM Historuy of Programming Languages II conference.
• How to increase the acceptance ratios of top conferences? G. Cormode, A. Czumaj and S.M. Muthukrishnan In Proceedings of the 3rd International Conference on Fun with Algorithms (FUN 2004), Isola d'Elba, Tuscany, Italy, May 26 - 28, 2004.
• The hardness of the Lemming Games G. Cormode, presented at FUN04.
• Li, J., Sung, M., Xu, J., Li, L. "Large-Scale IP Traceback in High-Speed Internet: Practical Techniques and Theoretical Foundation", in 2004 IEEE Symposium on Security and Privacy.
• Science and Substance: A Challenge to Software Engineers Fenton, Pfleeger, Glass, IEEE Software V11N4 (July 1994).
• Rooter: A Methodology for the Typical Unification of Access Points and Redundancy. Jeremy Stribling, Daniel Aguayo and Maxwell Krohn. WMSCI 2005 (allegedly).
• How to Make a Semantic Web Browser. http://www.www2004.org/proceedings/docs/1p255.pdf
• In Proc. 1st USENIX/ACM Symposium on Networked Systems Design and Implementation (NSDI '04) San Francisco, CA, March 2004.
• Talkers and Listeners - how to encourage students to participate in classroom discussion
• Ian Parberry's ``A guide for new referees in theoretical computer science'', SIGACT News, 20(4):92-109.
• Democratizing Content Publication with Coral Michael J. Freedman, Eric Freudenthal, and David Mazi
• Mining the Space of Graph Properties. Jeh and Widom, KDD04.
• Policy optimization for dynamic power management http://portal.acm.org/citation.cfm?id=277094.
• Shadbolt, N. R., Gibbins, N., Glaser, H., Harris, S. and schraefel, m. c. (2004) CS AKTive Space or how we stopped worrying and learned to love the Semantic Web. IEEE Intelligent Systems. here
• Sanda Harabagiu, Dan Moldovan, Marius Pasca, Rada Mihalcea, Mihai Surdeanu, Razvan Bunescu, Roxana Girju, Vasile Rus and Paul Morarescu, FALCON: Boosting Knowledge for Answer Engines, in Proceedings of the Text Retrieval Conference (TREC-9), November, 2000. here
• Sanda Harabagiu, Deriving Metonymic Coercions from WordNet, in Proceedings of the Workshop on Usage of WordNet in Natural Language Processing Systems, COLING-ACL'98, Montreal, Canada, August 1998, pages 142-148. (a much more technical paper from the same site)
• D. H. Wolpert and W. G. MacReady. No free lunch theorems for optimization. IEEE Transactions on Evolutionary Computation, April 1996. here
• S.M. Alamouti, "A Simple Transmit Diversity Technique for Wireless Communications, " IEEE Journal on Selected Areas in Communications, vol. 16, no. 8, pp. 1451--1458, Oct. 1998. One of the technologies behind WiMAX - see special issue of the Intel Technology Journal.
• Spatial Views Ni et al, LCR2004.
• Capability Myths Demolished. Mark Miller, Ka-Ping Yee, Jonathan Shapiro. here See referees' evaluation here (recommending rejection).
• Efficient communication in an ad-hoc network, Abraham Flaxman, Alan Frieze and Eli Upfal. Journal of Algorithms, March 2004 here
• Debugging and Verification of Parallel Systems - the picoChip Way Daniel Towner, Gajinder Panesar, Andrew Duller, Alan Gray, and Will Robbins. CPA2004 here
• Paulos, Eric; Goodman, Elizabeth. The Familiar Stranger: Anxiety, Comfort, and Play in Public Places. Proceedings of the 2004 Conference on Human Factors in Computing Systems, April 2004. Pages 223-230.
• Near Shannon limit error-correcting coding and decoding: Turbo-codes Berrou, C. Glavieux, A. Thitimajshima, P. ICC93. See also IEEE Trans Comms
• Algorithmic Issues in Wireless Data Delivery Nicolas Schabanel here
• Online dispersion algorithms for swarm,s of robots. Hsiang, Arkin, Bender, Fekete and Mitchell
• Design Principles of Policy Languages for Path Vector Protocols. Timothy G. Griffin (AT&T Research), Aaron D. Jaggard (Department of Mathematics, University of Pennsylvania), Vijay Ramachandran (Department of Computer Science, Yale University). SIGCOMM 2003. pdf
• Measurement, Modeling, and Analysis of a Peer-to-Peer File-Sharing Workload Krishna P. Gummadi, Richard J. Dunn, Stefan Saroiu, Steven D. Gribble, Henry M. Levy, John Zahorjan (University of Washington) SOSP2003.
• Bullet: High Bandwidth Data Dissemination Using an Overlay Mesh Dejan Kostic, Adolfo Rodriguez, Jeannie Albrecht, Amin Vahdat (Duke University) SOSP2003.
• SplitStream: High-Bandwidth Multicast in Cooperative Environments Miguel Castro, Peter Druschel, Ann-Marie Kermarrec, Animesh Nandi, Antony Rowstron, Atul Singh (Microsoft Research and Rice University) SOSP 2003.
• Samsara: Honor Among Thieves in Peer-to-Peer Storage Landon P. Cox, Brian D. Noble (University of Michigan) SOSP 2003.
• User-level Internet Path Diagnosis Ratul Mahajan, Neil Spring, David Wetherall, Thomas Anderson (University of Washington) SOSP 2003.
• BitTorrent
• Faster methods for calculating PageRank
• High-Rate Codes that are Linear in Space and Time. Babak Hassibi, Bertrand M. Hochwald. IEEE TRANS INFORM THEORY Volume: 48 Page: 1804-1824 Year: JUL 2002.
• R. Bhatia, J. Chuzhoy, A. Freund, and J. (S.) Naor. Algorithmic Aspects of Bandwidth Trading. Proc. 30th International Colloquium on Automata, Languages, and Programming (ICALP03), 2003.
• T. Kelly. The case for a new IP congestion control framework. Technical Report CUED/FINFENG /TR.434, Laboratory for Communication Engineering, Cambridge University, June 2002. http://citeseer.nj.nec.com/kelly02case.html
• http://www.ics.uci.edu/~bagchi/pub.html - Efficient strategies for topics in Internet Algorithmics. PhD thesis submitted to Johns Hopkins university. October 2002. Amitabha Bagchi
• http://citeseer.nj.nec.com/412816.html - Teaching Internet Algorithmics (Make Corrections) Michael T. Goodrich, Roberto Tamassia SIGCSEB: SIGCSE Bulletin (ACM Special Interest Group on Computer Science Education)
• Tygar, J.D. and Yee, B.S., "Secure Coprocessors in Electronic Commerce Applications," Proceedings 1995 USENIX Electronic Commerce Workshop, 1995, New York. http://citeseer.nj.nec.com/article/yee95secure.html
• Digital Fountain
• FreeNet
• Syme and Gordon
• Trusted Logic's smartcard verifier
• JavaSeal
• Missing the memory wall
• Switchlets, cplane and other active networking ideas
• D. Ferrari and D. Verma, A Scheme for Real-Time Channel Establishment in Wide-Area Networks, IEEE J. on Selected Areas in Communications, April 1990. http://citeseer.nj.nec.com/ferrari90scheme.html
• Timing Attacks on Implementation of Diffie-Hellman
• Sprite: A Simple, Cheat-Proof, Credit-Based System for Mobile Ad-Hoc Networks. Sheng Zhong, Jiang Chen, and Yang Richard Yang. Technical Report Yale/DCS/TR1235, Department of Computer Science, Yale University, July 2002. A revised version will appear in Proceedings of IEEE Infocom 2003, San Francisco, CA, April 2003.

• Steve Lawrence, C. Lee Giles, and Kurt Bollacker. Digital libraries and autonomous citation indexing. IEEE Computer, 32(6):67--71, 1999. http://citeseer.nj.nec.com/article/lawrence99digital.html
• Krsul, I., & Spafford, E. H. (1996). Authorship analysis: Identifying the author of a program, (CSD-TR- 96-052), West Lafayette, IN: Purdue University, Department of Computer Sciences. http://citeseer.nj.nec.com/krsul96authorship.html
• The Bulgarian Virus Factory
Computer Immunology
• Collberg, C., and Thomborson, C. Software watermarking: Models and dynamic embeddings. In Conference Record of POPL '99: The 26th ACM SIGPLAN-SIGACT Symposium on Principles of Programming Languages (to appear) (Jan. 1999). http://citeseer.nj.nec.com/collberg99software.html
• F. Nielson, H. Riis Nielson, R. R. Hansen, and J. G. Jensen. Validating firewalls in mobile ambients. In Proceedings of CONCUR'99, volume 1664 of LNCS, pages 463--477, 1999.
• R. Yahalom, B. Klein and T. Beth. Trust relationships in secure systems---A distributed authentication perspective. In Proceedings of the 1993 IEEE Symposium on Research in Security and Privacy, pages 150--164, May 1993. http://citeseer.nj.nec.com/yahalom93trust.html
• Abdul-Rahman A., Hailes S. Supporting Trust in Virtual Communities. In: Hawaii Int. Conference on System Sciences 33 , Maui, Hawaii, January 2000. http://citeseer.nj.nec.com/article/abdul-rahman00supporting.html
• Modelling a Public Key Infrastructure. Ueli Maurer, ESORICS 96.
• M. Shankar, M. DeMiguel and J. Liu, An end-to-end QoS management architecture, in: Proc. IEEE Real-Time Technology and Applications Symposium (RTAS '99), 1999.
• V. Paxson. End-to-End Routing Behavior in the Internet. Proceedings of the ACM SIGCOMM '96 Conference on Applications, Technologies, Architectures, and Protocols for Computer Communication, August 26-30, 1996, Stanford, CA, 25--39, Aug. 1996. ACM Digital Library. For citations see http://citeseer.nj.nec.com/37187.html
• V. Paxson. Why We Don't Know How to Simulate the Internet. In Proceedings of the 1997 Winter Simulation Conference, Atlanta GA, U.S.A., Dec. 1997. http://citeseer.nj.nec.com/paxson97why.html
• Albert, R., Jeong, H. & Barabsi, A.-L. The Internet's Achilles' heel: Error and attack tolerance of complex networks. Nature , in press (2000). http://citeseer.nj.nec.com/albert00internets.html
• Peter R. Wurman, Michael P. Wellman, and William E. Walsh. A parametrization of the auction design space. Games and Economic Behavior, this volume, 2000. http://citeseer.nj.nec.com/article/wurman99parametrization.html
• Department of Computer Science and Engineering, Pennsylvania State University Computer Science & Engineering: CSE 597I, "Computational Issues in E-Commerce and the E-World" (Fall 2000), graduate seminar course led by Lee Giles, http://www.ist.psu.edu/faculty_pages/giles/CSE597I/
• Poblano - A Distributed Trust Model for Peer-to-Peer Networks is part of the Sun JXTA documentation. www.jxta.org/project/www/docs/trust.pdf