A B C D E F G H I J K L M N O P Q R S T U V W X Y Z _

A

absolute(int) - Method in class uk.ac.ic.doc.automed.wrappers.AutoMedResult
 
AbsoluteEuclideanClassifier - Class in uk.ac.ic.doc.automed.matching.modules.bidirectionalmap
 
AbsoluteEuclideanClassifier(Cluster[], double) - Constructor for class uk.ac.ic.doc.automed.matching.modules.bidirectionalmap.AbsoluteEuclideanClassifier
 
AbstractClient - Class in uk.ac.ic.doc.automed.p2p.communication
 
AbstractClient(RequestListener) - Constructor for class uk.ac.ic.doc.automed.p2p.communication.AbstractClient
Create a client with no fixed specification of destination hosts
AbstractClient(String, int, RequestListener) - Constructor for class uk.ac.ic.doc.automed.p2p.communication.AbstractClient
 
AbstractClient(String, int, RequestListener, byte[]) - Constructor for class uk.ac.ic.doc.automed.p2p.communication.AbstractClient
 
AbstractDaemon - Class in uk.ac.ic.doc.automed.p2p.communication
 
AbstractDaemon(RequestListener) - Constructor for class uk.ac.ic.doc.automed.p2p.communication.AbstractDaemon
 
AbstractMessage - Class in uk.ac.ic.doc.automed.p2p.messages.abstractlayer
 
AbstractMessage(String, String, String, String, String, Map) - Constructor for class uk.ac.ic.doc.automed.p2p.messages.abstractlayer.AbstractMessage
 
AbstractModule - Class in uk.ac.ic.doc.automed.matching.modules
The AbstractModule class represents an abstract schema matching module.
AbstractModule() - Constructor for class uk.ac.ic.doc.automed.matching.modules.AbstractModule
 
AbstractNetwork - Class in uk.ac.ic.doc.automed.p2p.tree
 
AbstractNetwork(List) - Constructor for class uk.ac.ic.doc.automed.p2p.tree.AbstractNetwork
 
AbstractObjectBinding - Class in uk.ac.ic.doc.automed.util.persist
AbstractTupleBinding.java

Provides more developer-friendly methods than those defined in the TupleBinding parent class
AbstractObjectBinding() - Constructor for class uk.ac.ic.doc.automed.util.persist.AbstractObjectBinding
Creates a new instance of AbstractTupleBinding
AbstractQueryAnnotationProvider - Class in uk.ac.bbk.dcs.automed.qproc.annotate
 
AbstractQueryAnnotationProvider() - Constructor for class uk.ac.bbk.dcs.automed.qproc.annotate.AbstractQueryAnnotationProvider
 
AbstractRequestListener - Class in uk.ac.ic.doc.automed.p2p.communication
 
AbstractRequestListener() - Constructor for class uk.ac.ic.doc.automed.p2p.communication.AbstractRequestListener
Creates a new instance of AbstractRequestListener
AbstractServer - Class in uk.ac.ic.doc.automed.p2p.communication
 
AbstractServer(int, RequestListener) - Constructor for class uk.ac.ic.doc.automed.p2p.communication.AbstractServer
 
accept(File) - Method in class uk.ac.ic.doc.automed.editor.DotExtensionFileFilter
 
accept(File) - Method in class uk.ac.ic.doc.automed.wrappers.XMLFileFilter
Return true if this file should be shown in the directory pane, false if it shouldn't.
AccessMethod - Class in uk.ac.ic.doc.automed.reps
The AccessMethod class describes how a particular database presented by a Schema can be accessed by an AutoMed application, using a particular Protocol.
ackExpected - Variable in class uk.ac.ic.doc.automed.p2p.communication.AbstractClient
 
action - Variable in class uk.ac.ic.doc.automed.editor.UserActionClass
 
ACTION_ADD - Static variable in class uk.ac.ic.doc.automed.reps.Transformation
Transformation action "add"
ACTION_ADD_STR - Static variable in class uk.ac.ic.doc.automed.reps.Transformation
 
ACTION_CONTRACT - Static variable in class uk.ac.ic.doc.automed.reps.Transformation
Transformation action "contract"
ACTION_CONTRACT_STR - Static variable in class uk.ac.ic.doc.automed.reps.Transformation
 
ACTION_DELETE - Static variable in class uk.ac.ic.doc.automed.p2p.directory.PeerEvent
 
ACTION_DELETE - Static variable in class uk.ac.ic.doc.automed.p2p.directory.SchemaEvent
 
ACTION_DELETE - Static variable in class uk.ac.ic.doc.automed.reps.Transformation
Transformation action "delete"
ACTION_DELETE_STR - Static variable in class uk.ac.ic.doc.automed.reps.Transformation
 
ACTION_EXTEND - Static variable in class uk.ac.ic.doc.automed.reps.Transformation
Transformation action "extend"
ACTION_EXTEND_STR - Static variable in class uk.ac.ic.doc.automed.reps.Transformation
 
ACTION_IDENT - Static variable in class uk.ac.ic.doc.automed.reps.Transformation
Transformation action "ident"
ACTION_IDENT_STR - Static variable in class uk.ac.ic.doc.automed.reps.Transformation
 
ACTION_MAXIMUM - Static variable in class uk.ac.ic.doc.automed.reps.Transformation
 
ACTION_MINIMUM - Static variable in class uk.ac.ic.doc.automed.reps.Transformation
 
action_obj - Variable in class uk.ac.bbk.dcs.automed.qproc.iql.EnvParser
Instance of action encapsulation class.
action_obj - Variable in class uk.ac.bbk.dcs.automed.qproc.iql.QParser
Instance of action encapsulation class.
ACTION_REGISTER - Static variable in class uk.ac.ic.doc.automed.p2p.directory.PeerEvent
 
ACTION_REGISTER - Static variable in class uk.ac.ic.doc.automed.p2p.directory.SchemaEvent
 
ACTION_RENAME - Static variable in class uk.ac.ic.doc.automed.reps.Transformation
Transformation action "rename"
ACTION_RENAME_STR - Static variable in class uk.ac.ic.doc.automed.reps.Transformation
 
action_table() - Method in class uk.ac.bbk.dcs.automed.qproc.iql.EnvParser
Access to parse-action table.
action_table() - Method in class uk.ac.bbk.dcs.automed.qproc.iql.QParser
Access to parse-action table.
ACTION_UPDATE - Static variable in class uk.ac.ic.doc.automed.p2p.directory.PeerEvent
 
ACTION_UPDATE - Static variable in class uk.ac.ic.doc.automed.p2p.directory.SchemaEvent
 
actionPerformed(ActionEvent) - Method in class uk.ac.ic.doc.automed.editor.IQLTool
Edited by dmle 23/11/2005: add caching
Basically we would like to check for similar queries to a new query in the cache before
executing the new query.
The query execution routine was moved to method #executeQuery(ASG) to increase modularity
actionPerformed(ActionEvent) - Method in class uk.ac.ic.doc.automed.editor.MatchingTool
 
actionPerformed(ActionEvent) - Method in class uk.ac.ic.doc.automed.editor.PathwayOptimiserTool
 
actionPerformed(ActionEvent) - Method in class uk.ac.ic.doc.automed.editor.ReportException
 
actionPerformed(ActionEvent) - Method in class uk.ac.ic.doc.automed.editor.UserAction
 
actionPerformed(ActionEvent) - Method in class uk.ac.ic.doc.automed.editor.WrapperTool
 
actionPerformed(ActionEvent) - Method in class uk.ac.ic.doc.automed.editor.XMLSchemaEditor
 
actionPerformed(ActionEvent) - Method in class uk.ac.ic.doc.automed.p2p.gui.LoginFrame
 
actionPerformed(ActionEvent) - Method in class uk.ac.ic.doc.rodex.p2p.gui.CacheViewerFrame
Implements ActionListener interface
actionPerformed(ActionEvent) - Method in class uk.ac.ic.doc.rodex.p2p.gui.LoginGui
 
actionPerformed(ActionEvent) - Method in class uk.ac.ic.doc.rodex.p2p.gui.QueryTool
Override this method for new query execution
actionWeights - Static variable in class uk.ac.ic.doc.automed.reps.Transformation
 
AD_CHECK_CACHE_FIRST - Static variable in interface uk.ac.ic.doc.automed.qproc.cache.CachePolicy
 
AD_CHECK_CACHE_LAST - Static variable in interface uk.ac.ic.doc.automed.qproc.cache.CachePolicy
 
AD_CHECK_CONTAINMENT - Static variable in interface uk.ac.ic.doc.automed.qproc.cache.CachePolicy
 
ADD - Static variable in exception uk.ac.ic.doc.automed.IntegrityException
Exception caused by an operation doing some sort of addition to the repository.
add(BidirectionalDegree) - Method in class uk.ac.ic.doc.automed.matching.BidirectionalDegree
Adds the specified bidirectional degree to the current degree.
add - Static variable in class uk.ac.ic.doc.automed.reps.Syntax.Token
 
add(AutoMedFloat) - Method in class uk.ac.ic.doc.automed.wrappers.AutoMedFloat
Return the sum of two AutoMedFloats.
add(AutoMedInteger) - Method in class uk.ac.ic.doc.automed.wrappers.AutoMedInteger
Return the sum of two AutoMedIntegers.
add(MiniConQueryRewriter.MiniConDescription) - Method in class uk.ac.ic.doc.rodex.qproc.MiniConQueryRewriter.MiniConDescription
A method to add two MCD objects together.
add_escapes(String) - Method in exception uk.ac.bbk.dcs.automed.qproc.annotate.grammars.schemes.ParseException
Used to convert raw characters to their escaped version when these raw version cannot be used as part of an ASCII string literal.
add_escapes(String) - Method in exception uk.ac.bbk.dcs.automed.qproc.annotate.grammars.simpleComp.ParseException
Used to convert raw characters to their escaped version when these raw version cannot be used as part of an ASCII string literal.
add_escapes(String) - Method in exception uk.ac.bbk.dcs.automed.qproc.annotate.grammars.simpleCompAppend.ParseException
Used to convert raw characters to their escaped version when these raw version cannot be used as part of an ASCII string literal.
add_escapes(String) - Method in exception uk.ac.bbk.dcs.automed.qproc.annotate.grammars.simpleCompAppendMonus.ParseException
Used to convert raw characters to their escaped version when these raw version cannot be used as part of an ASCII string literal.
add_escapes(String) - Method in exception uk.ac.bbk.dcs.automed.qproc.translators.xquery.ParseException
Used to convert raw characters to their escaped version when these raw version cannot be used as part of an ASCII string literal.
addAllTypesToHierarchy(TypeHierarchy) - Static method in class uk.ac.ic.doc.automed.reps.TypeHierarchy
Load ALL types for this type hierarchy.
addApplyToSpine - Variable in class uk.ac.bbk.dcs.automed.qproc.evaluate.Evaluator
 
addArrayToList(Object[], List) - Static method in class uk.ac.ic.doc.automed.Util
Adds in order all elements in the source array to the destination List and returns the destination list so that the method can be used as an argument to a method call.
addASubGoal(QuerySubGoal) - Method in class uk.ac.ic.doc.rodex.qproc.MiniConQueryRewriter.MiniConDescription
Add a sub-goal to this MCD
addAttachedElement(SchemaElement) - Method in class uk.ac.ic.doc.automed.matching.SchemaElement
 
addAttribute(String) - Method in class uk.ac.bbk.dcs.automed.xml.xmldssGraph.XMLDSSGraphElement
 
addAutoMedTuple(AutoMedTuple) - Method in class uk.ac.ic.doc.automed.wrappers.AutoMedResult
Assert that a certain row number exists in a result
addAuxiliaryModule(AbstractModule) - Method in class uk.ac.ic.doc.automed.matching.Aggregator
Appends the specified module to the list of auxiliary modules of this Aggregator
addBoundField(String) - Method in class uk.ac.ic.doc.rodex.qproc.QueryVariable
Add variable to which this head var is bound to
addBoundFunction(QueryFunction) - Method in class uk.ac.ic.doc.rodex.qproc.QueryVariable
Add a reference to a QueryFunction object that uses this variable
addChild(TreeNode) - Method in class uk.ac.bbk.dcs.automed.graph.TreeNode
Adds a node to the set of children of the node
addChild(Object) - Method in class uk.ac.bbk.dcs.automed.xml.xmldssGraph.XMLDSSGraphElement
 
addChild(TreeNode) - Method in class uk.ac.ic.doc.automed.p2p.tree.TreeNode
 
addChild(Element) - Method in class uk.ac.ic.doc.automed.wrappers.xsdomobject.ComplexType
Add a child element
addChild(ArrayList) - Method in class uk.ac.ic.doc.automed.wrappers.xsdomobject.ComplexType
Add a list of child elements
addChildAttribute(Attribute) - Method in class uk.ac.ic.doc.automed.wrappers.xsdomobject.ComplexType
Add a child Attribute
addChildAttributes(ArrayList) - Method in class uk.ac.ic.doc.automed.wrappers.xsdomobject.ComplexType
Add a list of child Attributes
addClass(Class) - Method in class uk.ac.ic.doc.automed.p2p.tree.MainObjectClasses
 
addCommand(String, Class, String) - Static method in class uk.ac.ic.doc.automed.DSR
Looks for a public method with the signature doCommand(String[] args) in the class methodClass and adds it to the commands that can be invoked from the CLI.
addConstraintScheme() - Method in class uk.ac.ic.doc.automed.reps.Construct
Constraint schemes can only be added to constructs of type Nodal, Link-Nodal, Link or Constraint Defaults to isKey = true, 1..1
addConstraintScheme(boolean) - Method in class uk.ac.ic.doc.automed.reps.Construct
 
addConstraintScheme(int, int) - Method in class uk.ac.ic.doc.automed.reps.Construct
 
addConstraintScheme(int, int, boolean) - Method in class uk.ac.ic.doc.automed.reps.Construct
 
addConstructConstraint(int, String, String) - Method in class uk.ac.ic.doc.automed.reps.Construct
Add a new construct constraint to repository
addContentItem(String, Object) - Method in class uk.ac.ic.doc.automed.util.cache.CacheItem
Add a new content item to this cache entry
addDataSource(String, String, String, String, String) - Method in class uk.ac.ic.doc.automed.p2p.directory.P2PDirectoryRepository
Add a new data source definition to the repository
addDefQuery(TransformationAbstraction) - Method in class uk.ac.ic.doc.rodex.qproc.QuerySubGoal
Add a definition query for the schema object represented by this sub-goal.
addDomainSpecToSchema(List, Schema) - Method in class uk.ac.ic.doc.automed.p2p.tree.ObjectBuilder
Added support for domain spec
addEdge(Edge) - Method in class uk.ac.bbk.dcs.automed.hdmstore.HdmStore
Takes an Edge struture and stores this in the database.
addEdgeNameScheme() - Method in class uk.ac.ic.doc.automed.reps.Construct
EdgeName schemes can only be added to LINK and LINK-NODAL construct types.
addEdgeNameScheme(boolean) - Method in class uk.ac.ic.doc.automed.reps.Construct
 
addElement(XMLDSSGraphElement, XMLDSSGraphElement) - Method in class uk.ac.bbk.dcs.automed.xml.xmldssGraph.XMLDSSGraph
 
addElement(ElementVectorRepresentation) - Method in class uk.ac.ic.doc.automed.matching.modules.bidirectionalmap.Cluster
 
addElement(ElementVectorRepresentation) - Method in class uk.ac.ic.doc.automed.matching.modules.bidirectionalmap.Clusterer
 
addElements(ElementVectorRepresentation[]) - Method in class uk.ac.ic.doc.automed.matching.modules.bidirectionalmap.Clusterer
 
addEntry(ASG, ASG, AutoMedType[]) - Method in class uk.ac.ic.doc.rodex.qproc.QueryRewriterResult
Add a view entry (i.e.
addEntry(ASG, ASG, AutoMedType[]) - Method in class uk.ac.ic.doc.rodex.qproc.RangeBasedQueryRewriterResult
 
addEscapes(String) - Static method in error uk.ac.bbk.dcs.automed.qproc.annotate.grammars.schemes.TokenMgrError
Replaces unprintable characters by their espaced (or unicode escaped) equivalents in the given string
addEscapes(String) - Static method in error uk.ac.bbk.dcs.automed.qproc.annotate.grammars.simpleComp.TokenMgrError
Replaces unprintable characters by their espaced (or unicode escaped) equivalents in the given string
addEscapes(String) - Static method in error uk.ac.bbk.dcs.automed.qproc.annotate.grammars.simpleCompAppend.TokenMgrError
Replaces unprintable characters by their espaced (or unicode escaped) equivalents in the given string
addEscapes(String) - Static method in error uk.ac.bbk.dcs.automed.qproc.annotate.grammars.simpleCompAppendMonus.TokenMgrError
Replaces unprintable characters by their espaced (or unicode escaped) equivalents in the given string
addEscapes(String) - Static method in error uk.ac.bbk.dcs.automed.qproc.translators.xquery.TokenMgrError
Replaces unprintable characters by their espaced (or unicode escaped) equivalents in the given string
addEventListener(EventListener) - Method in class uk.ac.ic.doc.automed.p2p.directory.P2PDirectory
Register an EventListener object
addEventListener(EventListener) - Method in class uk.ac.ic.doc.rodex.p2p.DirectoryServicePeer
Register an EventListener object
addExtension(String) - Method in class uk.ac.ic.doc.automed.wrappers.XMLFileFilter
Adds a filetype "dot" extension to filter against.
addFoldFunction(FoldFunction) - Method in class uk.ac.bbk.dcs.automed.qproc.optimise.FoldFunctionTable
 
addFunction(String, BuiltInFunction) - Method in class uk.ac.bbk.dcs.automed.qproc.FunctionTable
 
addFunctionTable(FunctionTable) - Method in class uk.ac.bbk.dcs.automed.qproc.FunctionTable
 
addFunctionTable(FunctionTable) - Method in class uk.ac.bbk.dcs.automed.qproc.QueryProcessorConfiguration
Adds the input function table to the existing function table contained by this object (every QueryProcessorConfiguration object is instantiated with StandardFunctionTable)
addFunctionTable(FunctionTable[]) - Method in class uk.ac.bbk.dcs.automed.qproc.QueryProcessorConfiguration
Adds the input function tables to the existing function table contained by this object (every QueryProcessorConfiguration object is instantiated with StandardFunctionTable)
addFunctionTokens(FunctionTable) - Static method in class uk.ac.bbk.dcs.automed.qproc.iql.ReservedTokens
 
addGenericRoot(Document, String) - Static method in class uk.ac.bbk.dcs.automed.xml.utilities.XMLUtilities
Method that adds a generic root named newRootName on top of the old root and returns the new document.
addGraphNode(DirectedGraphNode) - Method in class uk.ac.bbk.dcs.automed.graph.DirectedGraph
Adds a node in the graph.
addIncomingEdge(DirectedGraphNode) - Method in class uk.ac.bbk.dcs.automed.graph.DirectedGraphNode
Adds a node in the set of incoming edges of the calling node.
addJob(Job, JobHandler) - Method in class uk.ac.ic.doc.automed.util.queue.Queue
Add a new a job to end of queue
addJobHandler(JobHandler) - Method in class uk.ac.ic.doc.automed.util.queue.QueueWorker
Register a new job handler for jobs.
addKey(XSDOMObject, XSDOMObject) - Method in class uk.ac.ic.doc.automed.xmlschema.JTreeTransform
 
addKeyRef(XSDOMObject, XSDOMObject, XSDOMObject, XSDOMObject) - Method in class uk.ac.ic.doc.automed.xmlschema.JTreeTransform
Methods to add extra AutoMed schemes from the JTree Add an xmlSchema:keyRef construct to AutoMed from the JTree.
addLabelScheme() - Method in class uk.ac.ic.doc.automed.reps.Construct
Label schemes are scheme arguments that have no corresponding HDM (except maybe through automatic HDM node and edge names if the label is defined as key for its construct) Defaults to isKey = true, 1..1
addLabelScheme(boolean) - Method in class uk.ac.ic.doc.automed.reps.Construct
 
addLabelScheme(int, int) - Method in class uk.ac.ic.doc.automed.reps.Construct
 
addLabelScheme(int, int, boolean) - Method in class uk.ac.ic.doc.automed.reps.Construct
 
addLayoutComponent(String, Component) - Method in class uk.ac.ic.doc.automed.editor.PinBoardLayout
 
addListener(StateChangedListener) - Method in class uk.ac.ic.doc.automed.p2p.state.PeerStateHandler
Register an interested listener
addListener(CacheManagementListener) - Static method in class uk.ac.ic.doc.automed.qproc.cache.CacheManager
 
addListener(CacheListener) - Method in class uk.ac.ic.doc.automed.qproc.cache.DefaultQueryCache
Register a listener for handling cache-related events
addListener(CacheListener) - Method in interface uk.ac.ic.doc.automed.util.cache.Cacheable
Add a listener to the cache
addMainClass(Class) - Method in class uk.ac.ic.doc.automed.p2p.tree.Root
 
addModel(String, String, String) - Method in class uk.ac.ic.doc.automed.p2p.directory.P2PDirectoryRepository
Save a model structure to repository
addModel(String, String, String, String[]) - Method in class uk.ac.ic.doc.automed.p2p.directory.P2PDirectoryRepository
An overload method of #addModel(name, description, structure) above
addModelChangeListener(ModelChangeListener) - Method in class uk.ac.ic.doc.automed.reps.Model
 
addModelsListener(ModelsListener) - Static method in class uk.ac.ic.doc.automed.reps.Model
Add an instance of any class implementing interface ModelsListener such that it will be notified of any adding or deleting of models that may occur.
addModule(AbstractModule) - Method in class uk.ac.ic.doc.automed.matching.Filter
Appends the specified module to the list of modules of this Filter object.
addNestTransform(String, String, XSDOMObject, XSDOMObject) - Method in class uk.ac.ic.doc.automed.xmlschema.JTreeTransform
Automed transforations to nest an element inside another one, replacing an fk element in the process
addNetworkChangeListener(NetworkChangeListener) - Method in class uk.ac.ic.doc.automed.reps.Network
 
addNetworksListener(NetworksListener) - Static method in class uk.ac.ic.doc.automed.reps.Network
 
addNode(String, String) - Method in class uk.ac.bbk.dcs.automed.hdmstore.HdmStore
Takes a node type and a value and adds to the database
addNodeNameScheme() - Method in class uk.ac.ic.doc.automed.reps.Construct
NodeName schemes can only be added to NODAL and LINK-NODAL construct types.
addNodeNameScheme(boolean) - Method in class uk.ac.ic.doc.automed.reps.Construct
 
addNodeNameScheme(int, int) - Method in class uk.ac.ic.doc.automed.reps.Construct
 
addNodeNameScheme(int, int, boolean) - Method in class uk.ac.ic.doc.automed.reps.Construct
 
addNonAuxiliaryModule(AbstractModule) - Method in class uk.ac.ic.doc.automed.matching.Aggregator
Appends the specified module to the list of non-auxiliary modules of this Aggregator
addObject(Object) - Method in class uk.ac.ic.doc.automed.editor.PatternWritingTool.DynamicTree
Add child to the currently selected node.
addObject(DefaultMutableTreeNode, Object) - Method in class uk.ac.ic.doc.automed.editor.PatternWritingTool.DynamicTree
 
addObject(DefaultMutableTreeNode, Object, boolean) - Method in class uk.ac.ic.doc.automed.editor.PatternWritingTool.DynamicTree
 
addObject(DefaultMutableTreeNode, Object, int, boolean) - Method in class uk.ac.ic.doc.automed.editor.PatternWritingTool.DynamicTree
 
addObject(AutoMedObject) - Method in class uk.ac.ic.doc.automed.p2p.tree.CollectionSet
 
addObject(PersistentObject) - Method in class uk.ac.ic.doc.automed.p2p.tree.Root
 
addObjectCollection(ObjectCollection) - Method in class uk.ac.ic.doc.automed.p2p.tree.Root
 
addObjectsToSchema(List, Schema) - Method in class uk.ac.ic.doc.automed.p2p.tree.ObjectBuilder
dmle 13/11/2005: change scope to package level
addOutgoingEdge(DirectedGraphNode) - Method in class uk.ac.bbk.dcs.automed.graph.DirectedGraphNode
Adds a node in the set of outgoing edges of the calling node.
addPathway(Object[]) - Method in class uk.ac.ic.doc.automed.p2p.directory.P2PDirectoryRepository
Add a new pathway definition to the repository
addPathwayTranformation(Object[]) - Method in class uk.ac.ic.doc.automed.p2p.directory.P2PDirectoryRepository
Add a new pathway transformation to the repository
addPeer(String[]) - Method in class uk.ac.ic.doc.automed.p2p.directory.P2PDirectoryRepository
Add a new peer
addPeer(String, String) - Method in class uk.ac.ic.doc.automed.p2p.directory.P2PDirectoryRepository
Deprecated.  
addPeerSchema(String, String) - Method in class uk.ac.ic.doc.automed.p2p.directory.P2PDirectoryRepository
 
addPI(String) - Method in class uk.ac.ic.doc.automed.wrappers.xsdomobject.Document
Add the PI info to the top of the schema file
addPrefix(String, String) - Static method in class uk.ac.ic.doc.automed.Util
Adds the prefix to the beginning of each line in message
addPrefix(String, String) - Static method in class uk.ac.ic.doc.automed.xml.XMLSyntax
 
addQuery(String, Object) - Method in class uk.ac.ic.doc.automed.qproc.cache.DefaultQueryCache
Store reference to the AbstractQueryProcessor object that processes this query
so that we can in a later stage use the query analysis with query result
to build a semantic cache entry for the query
.
addQuery(String, Object) - Method in interface uk.ac.ic.doc.automed.qproc.cache.IQueryCache
Store reference to the AbstractQueryProcessor object that processes this query
so that we can in a later stage use the query analysis with query result
to build a semantic cache entry for the query
.
addQueryResult(String, Object) - Method in class uk.ac.ic.doc.automed.qproc.cache.DefaultQueryCache
Add a new query to cache.
addQueryResult(String, Object) - Method in interface uk.ac.ic.doc.automed.qproc.cache.IQueryCache
Add a new query to cache.
addQuerySchemaObjectsToConditions(ArrayList) - Method in class uk.ac.ic.doc.automed.tml.TML
 
addRangeDef(String, AutoMedType[][]) - Method in class uk.ac.ic.doc.rodex.qproc.QueryRewriterResult
 
addRangeDef(String, AutoMedType[][]) - Method in class uk.ac.ic.doc.rodex.qproc.RangeBasedQueryRewriterResult
 
addReferenceScheme(Construct) - Method in class uk.ac.ic.doc.automed.reps.Construct
 
addReferenceScheme(Construct, boolean) - Method in class uk.ac.ic.doc.automed.reps.Construct
 
addReferenceScheme(Construct, int, int) - Method in class uk.ac.ic.doc.automed.reps.Construct
 
addReferenceScheme(Construct, int, int, boolean) - Method in class uk.ac.ic.doc.automed.reps.Construct
 
addReloadHook(Method) - Static method in class uk.ac.ic.doc.automed.DSR
 
addRequestListener(RequestListener) - Method in class uk.ac.ic.doc.automed.p2p.AutoMedPeer
Register a RequestListener object for client requests
addRequestListener(RequestListener) - Method in class uk.ac.ic.doc.automed.p2p.directory.P2PDirectory
Register a RequestListener object to client requests
addRequestListener(RequestListener) - Method in class uk.ac.ic.doc.rodex.p2p.DirectoryServicePeer
Register a RequestListener object to client requests
ADDRESS - Static variable in class uk.ac.ic.doc.automed.p2p.protocol.P2PConstants
 
address - Variable in class uk.ac.ic.doc.rodex.p2p.messages.applicationlayer.HelloMsg
 
addResult(String, String) - Method in class uk.ac.ic.doc.automed.p2p.messages.applicationlayer.TellBrokerQuery
 
addResults(List, List) - Method in class uk.ac.ic.doc.automed.p2p.messages.applicationlayer.TellBrokerQuery
 
addRootType(ComplexType) - Method in class uk.ac.ic.doc.automed.wrappers.xsdomobject.Document
Add a single root type
addRootTypes(ArrayList) - Method in class uk.ac.ic.doc.automed.wrappers.xsdomobject.Document
Add some root types
addSchema(String, String, String) - Method in class uk.ac.ic.doc.automed.p2p.directory.P2PDirectoryRepository
 
addSchemaChangeListener(SchemaChangeListener) - Method in class uk.ac.ic.doc.automed.reps.Schema
 
addSchemasListener(SchemasListener) - Static method in class uk.ac.ic.doc.automed.reps.Schema
Add an instance of any class implementing interface SchemasListener such that it will be notified of any adding or deleting of schemas that may occur.
addSchemeProfile(String, String, String) - Method in class uk.ac.ic.doc.automed.p2p.directory.P2PDirectoryRepository
Add schema-model-peer association
addSubGoal(QuerySubGoal) - Method in class uk.ac.ic.doc.rodex.qproc.QueryVariable
Add a new sub goal object that uses this shared variable
addSubGoals(List) - Method in class uk.ac.ic.doc.rodex.qproc.MiniConQueryRewriter.MiniConDescription
Add sub-goals to the MCD
addSubGraph(DirectedGraph) - Method in class uk.ac.bbk.dcs.automed.graph.DirectedGraph
Adds a subGraph in the set of subGraphs.
addSubQueryResult(String, String, Object) - Method in class uk.ac.ic.doc.automed.qproc.cache.DefaultQueryCache
Add result of a sub-query of a query in the cache.
addSubQueryResult(String, String, Object) - Method in interface uk.ac.ic.doc.automed.qproc.cache.IQueryCache
Add result of a sub-query of a query in the cache.
addSupressedTokenType(int) - Method in class uk.ac.ic.doc.automed.xml.XMLReader
 
addSupressedTokenTypes(int[]) - Method in class uk.ac.ic.doc.automed.xml.XMLReader
 
addToNegPostString(String) - Method in class uk.ac.ic.doc.automed.tml.TML
 
addToNegPreString(String) - Method in class uk.ac.ic.doc.automed.tml.TML
 
addToPosPostString(String) - Method in class uk.ac.ic.doc.automed.tml.TML
 
addToPosPreString(String) - Method in class uk.ac.ic.doc.automed.tml.TML
 
addToViewMap(SchemeInfo, Cell, Map, int) - Static method in class uk.ac.bbk.dcs.automed.qproc.reformulate.AtomicViewMap
 
addTree(TreeNode) - Method in class uk.ac.bbk.dcs.automed.graph.Forest
Adds a tree to the forest.
addTypeScheme() - Method in class uk.ac.ic.doc.automed.reps.Construct
Constraint schemes can only be added to constructs of type Nodal and Link-Nodal Defaults to isKey = true, 1..1
addTypeScheme(boolean) - Method in class uk.ac.ic.doc.automed.reps.Construct
 
addTypeScheme(int, int) - Method in class uk.ac.ic.doc.automed.reps.Construct
 
addTypeScheme(int, int, boolean) - Method in class uk.ac.ic.doc.automed.reps.Construct
 
addTypeToHierarchy(int, String, int, int) - Method in class uk.ac.ic.doc.automed.reps.TypeHierarchy
Add a type from the repository to the hierarchy
addTypeToHierarchy(String, String, String) - Method in class uk.ac.ic.doc.automed.reps.TypeHierarchy
Add a new type to the hierarchy and the repository.
addVariable(QueryVariable) - Method in class uk.ac.ic.doc.rodex.qproc.QuerySubGoal
A head variable of the sub-goal.
addViewSet(List) - Method in class uk.ac.ic.doc.rodex.qproc.QueryRewriterResult
 
addXMLDSS(String, Document, String) - Static method in class uk.ac.bbk.dcs.automed.xml.wrappers.NXDBSchemaManager
 
adjustBeginLineColumn(int, int) - Method in class uk.ac.bbk.dcs.automed.qproc.annotate.grammars.schemes.SimpleCharStream
Method to adjust line and column numbers for the start of a token.
adjustBeginLineColumn(int, int) - Method in class uk.ac.bbk.dcs.automed.qproc.annotate.grammars.simpleComp.SimpleCharStream
Method to adjust line and column numbers for the start of a token.
adjustBeginLineColumn(int, int) - Method in class uk.ac.bbk.dcs.automed.qproc.annotate.grammars.simpleCompAppend.SimpleCharStream
Method to adjust line and column numbers for the start of a token.
adjustBeginLineColumn(int, int) - Method in class uk.ac.bbk.dcs.automed.qproc.annotate.grammars.simpleCompAppendMonus.SimpleCharStream
Method to adjust line and column numbers for the start of a token.
adjustBeginLineColumn(int, int) - Method in class uk.ac.bbk.dcs.automed.qproc.translators.xquery.SimpleCharStream
Method to adjust line and column numbers for the start of a token.
ADVANCED_ALGORITHM - Static variable in class uk.ac.ic.doc.automed.tml.PathwayOptimiser
 
AdvancedQueryGetter - Class in uk.ac.ic.doc.rodex.p2p
 
AdvancedQueryGetter(AutoMedPeer) - Constructor for class uk.ac.ic.doc.rodex.p2p.AdvancedQueryGetter
 
ADVERTISE - Static variable in class uk.ac.ic.doc.automed.p2p.protocol.P2PConstants
performative
advertiseSchema(String) - Method in class uk.ac.ic.doc.automed.p2p.SchemaAdvertiser
 
advertizePath(SchemaDescription) - Method in class uk.ac.ic.doc.automed.p2p.gui.PeerApplication
 
AestheticRootLayout - Class in uk.ac.ic.doc.automed.editor.layout
 
AestheticRootLayout(Gui, Object[]) - Constructor for class uk.ac.ic.doc.automed.editor.layout.AestheticRootLayout
 
aestheticRootLayout(Gui, Object[]) - Static method in class uk.ac.ic.doc.automed.editor.layout.AestheticRootLayout
 
afterEv - Variable in class uk.ac.bbk.dcs.automed.qproc.OldQueryProcessor
 
afterEv - Variable in class uk.ac.bbk.dcs.automed.qproc.QueryProcessor
 
afterEv - Variable in class uk.ac.bbk.dcs.automed.qproc.TempQueryProcessor
 
afterLO - Variable in class uk.ac.bbk.dcs.automed.qproc.OldQueryProcessor
 
afterLO - Variable in class uk.ac.bbk.dcs.automed.qproc.QueryProcessor
 
afterLO - Variable in class uk.ac.bbk.dcs.automed.qproc.TempQueryProcessor
 
afterQAFP - Variable in class uk.ac.bbk.dcs.automed.qproc.OldQueryProcessor
 
afterQAFP - Variable in class uk.ac.bbk.dcs.automed.qproc.QueryProcessor
 
afterQAFP - Variable in class uk.ac.bbk.dcs.automed.qproc.TempQueryProcessor
 
afterQR - Variable in class uk.ac.bbk.dcs.automed.qproc.OldQueryProcessor
 
afterQR - Variable in class uk.ac.bbk.dcs.automed.qproc.QueryProcessor
 
afterQR - Variable in class uk.ac.bbk.dcs.automed.qproc.TempQueryProcessor
 
afterSubmit - Variable in class uk.ac.bbk.dcs.automed.qproc.OldQueryProcessor
 
afterSubmit - Variable in class uk.ac.bbk.dcs.automed.qproc.QueryProcessor
 
afterSubmit - Variable in class uk.ac.bbk.dcs.automed.qproc.TempQueryProcessor
 
afterTranslation - Variable in class uk.ac.bbk.dcs.automed.qproc.OldQueryProcessor
 
afterTranslation - Variable in class uk.ac.bbk.dcs.automed.qproc.QueryProcessor
 
afterTranslation - Variable in class uk.ac.bbk.dcs.automed.qproc.TempQueryProcessor
 
afterVU - Variable in class uk.ac.bbk.dcs.automed.qproc.QueryProcessor
 
aggregateIQLFunction - Variable in class uk.ac.bbk.dcs.automed.wrappers.IQLTranslator
 
aggregateQuery - Variable in class uk.ac.bbk.dcs.automed.wrappers.IQLTranslator
 
Aggregator - Class in uk.ac.ic.doc.automed.matching
The class that represents the Aggregator component in the schema matching architecture.
Aggregator(SchemaElementPair[]) - Constructor for class uk.ac.ic.doc.automed.matching.Aggregator
Constructs the Aggregator for the specified compatible pairs of elements.
AlgoPerfExp - Class in uk.ac.bbk.dcs.automed.xml.experiments.subclass
Class Task Description
AlgoPerfExp() - Constructor for class uk.ac.bbk.dcs.automed.xml.experiments.subclass.AlgoPerfExp
 
AlgoPerfExp - Class in uk.ac.bbk.dcs.automed.xml.experiments.thesis
Class Task Description
AlgoPerfExp() - Constructor for class uk.ac.bbk.dcs.automed.xml.experiments.thesis.AlgoPerfExp
 
ALL - Static variable in class uk.ac.ic.doc.automed.editor.MatchingTool
 
AllSchemasFrame - Class in uk.ac.ic.doc.automed.p2p.gui
 
AllSchemasFrame(PeerApplication) - Constructor for class uk.ac.ic.doc.automed.p2p.gui.AllSchemasFrame
 
alternation - Static variable in class uk.ac.ic.doc.automed.reps.Syntax.Token
 
am - Variable in class uk.ac.ic.doc.automed.wrappers.AutoMedWrapper
 
AM_XMLDSS_ATTRIBUTES - Static variable in class uk.ac.bbk.dcs.automed.xml.XMLConstants
 
AM_XMLDSS_DTD_CARDINALITY - Static variable in class uk.ac.bbk.dcs.automed.xml.XMLConstants
 
AM_XMLDSS_ID - Static variable in class uk.ac.bbk.dcs.automed.xml.XMLConstants
 
AM_XMLDSS_XSD_PRIMITIVE_TYPE - Static variable in class uk.ac.bbk.dcs.automed.xml.XMLConstants
 
AMQfromIQL(ASG) - Method in class uk.ac.bbk.dcs.automed.wrappers.SQLTranslator
 
AMQfromIQL(ASG) - Method in class uk.ac.bbk.dcs.automed.wrappers.Translator
 
analyse() - Method in class uk.ac.ic.doc.rodex.qproc.MiniConQueryRewriter
Implements method in QueryWriter parent class
Analyse query and view rules into head vars and sub-goals in order to prepare
for the actual rewrite to take place
analyse() - Method in class uk.ac.ic.doc.rodex.qproc.QueryAnalyser
Start analysing the query
analyse() - Method in class uk.ac.ic.doc.rodex.qproc.QueryRewriter
Analyse query and view rules to prepare for the actual rewriting to take place
analyse() - Method in class uk.ac.ic.doc.rodex.qproc.RangeBasedQueryRewriter
Implements method in QueryWriter parent class
Analyse query and view rules into head vars and sub-goals in order to prepare
for the actual rewrite to take place
And - Class in uk.ac.bbk.dcs.automed.qproc.functions.logical
 
And() - Constructor for class uk.ac.bbk.dcs.automed.qproc.functions.logical.And
 
AND - Static variable in interface uk.ac.bbk.dcs.automed.qproc.translators.xquery.XQuery2IQLConstants
 
AND - Static variable in class uk.ac.ic.doc.automed.wrappers.SQLQuery
SQL logical AND binary operator for use within WHERE expressions
annotate() - Method in class uk.ac.bbk.dcs.automed.qproc.iql.ASG
 
annotate(Cell, boolean) - Method in class uk.ac.bbk.dcs.automed.qproc.iql.Cell
 
ANNOTATION_COMP_ARG - Static variable in class uk.ac.bbk.dcs.automed.qproc.iql.Cell
 
ANNOTATION_COMP_ROOT - Static variable in class uk.ac.bbk.dcs.automed.qproc.iql.Cell
 
ANNOTATION_OPT_DO_NOT_UNNEST - Static variable in class uk.ac.bbk.dcs.automed.qproc.iql.Cell
 
ANNOTATION_OTHER - Static variable in class uk.ac.bbk.dcs.automed.qproc.iql.Cell
 
ANY - Static variable in class uk.ac.ic.doc.automed.editor.CommandLineDriver
 
ANY - Static variable in class uk.ac.ic.doc.automed.p2p.protocol.P2PConstants
 
APPEARS_WITH_DIFFERENT_SEMANTICS - Static variable in class uk.ac.bbk.dcs.automed.evolution2.ExtendedConstruct
 
APPEARS_WITH_SAME_SEMANTICS - Static variable in class uk.ac.bbk.dcs.automed.evolution2.ExtendedConstruct
 
appearsInSchemeOf(SchemaObject) - Method in class uk.ac.ic.doc.automed.reps.SchemaObject
Determines whether or not the schema object appears anywhere in the scheme of another schema object.
append() - Method in class uk.ac.bbk.dcs.automed.qproc.annotate.grammars.simpleCompAppend.SimpleCompAppend
 
APPEND - Static variable in interface uk.ac.bbk.dcs.automed.qproc.annotate.grammars.simpleCompAppend.SimpleCompAppendConstants
 
Append - Class in uk.ac.bbk.dcs.automed.qproc.functions.collections
 
Append() - Constructor for class uk.ac.bbk.dcs.automed.qproc.functions.collections.Append
 
appendmonus() - Method in class uk.ac.bbk.dcs.automed.qproc.annotate.grammars.simpleCompAppendMonus.SimpleCompAppendMonus
 
APPENDMONUS - Static variable in interface uk.ac.bbk.dcs.automed.qproc.annotate.grammars.simpleCompAppendMonus.SimpleCompAppendMonusConstants
 
appendQuery(TellBrokerQuery) - Method in class uk.ac.ic.doc.automed.p2p.messages.applicationlayer.TellBrokerQuery
 
application - Variable in class uk.ac.ic.doc.automed.p2p.gui.LoginFrame
 
application - Variable in class uk.ac.ic.doc.automed.p2p.gui.MainFrame
 
ApplicationMessage - Interface in uk.ac.ic.doc.automed.p2p.messages.applicationlayer
 
ApplicationPropertyException - Exception in uk.ac.ic.doc.automed.p2p
 
ApplicationPropertyException() - Constructor for exception uk.ac.ic.doc.automed.p2p.ApplicationPropertyException
 
ApplicationPropertyException(String) - Constructor for exception uk.ac.ic.doc.automed.p2p.ApplicationPropertyException
 
ApplicationPropertyException(Throwable) - Constructor for exception uk.ac.ic.doc.automed.p2p.ApplicationPropertyException
 
ApplicationPropertyException(String, Throwable) - Constructor for exception uk.ac.ic.doc.automed.p2p.ApplicationPropertyException
 
apply - Static variable in class uk.ac.bbk.dcs.automed.qproc.iql.Cell
 
apply(Cell) - Method in class uk.ac.bbk.dcs.automed.qproc.optimise.FoldNilRule
 
apply(Cell) - Method in class uk.ac.bbk.dcs.automed.qproc.optimise.optimisers.ChooseOptimiser
Applies rules in a bottom-to-top fashion.
apply(Cell) - Method in class uk.ac.bbk.dcs.automed.qproc.optimise.optimisers.CollectionOperatorReorganiser
 
apply(Cell) - Method in class uk.ac.bbk.dcs.automed.qproc.optimise.PatternRule
 
apply(Cell) - Method in interface uk.ac.bbk.dcs.automed.qproc.optimise.Rule
 
applyAddTransformation(Construct, Object[], String, String) - Method in class uk.ac.ic.doc.automed.reps.Schema
Returns the Schema which is the result of applying an ADD transformation.
applyAddTransformation(Construct, AutoMedType, Object[], String, String) - Method in class uk.ac.ic.doc.automed.reps.Schema
 
applyAddTransformation(Construct, Object[], String, String, String) - Method in class uk.ac.ic.doc.automed.reps.Schema
Returns the Schema which is the result of applying an ADD transformation.
applyAddTransformation(Construct, String, String, String) - Method in class uk.ac.ic.doc.automed.reps.Schema
 
applyConstraintTransformation(Schema, Set) - Static method in class uk.ac.bbk.dcs.automed.evolution.schemaModelEvolution.ExtensionalSchemaEvolution
 
applyConstraintTransformation(Schema, String) - Static method in class uk.ac.bbk.dcs.automed.evolution.schemaModelEvolution.ExtensionalSchemaEvolution
 
applyContractTransformation(Schema, String) - Static method in class uk.ac.bbk.dcs.automed.evolution.schemaModelEvolution.ExtensionalSchemaEvolution
 
applyContractTransformation(SchemaObject, String, String) - Method in class uk.ac.ic.doc.automed.reps.Schema
Returns the Schema which is the result of applying a CONTRACT transformation.
applyContractTransformation(SchemaObject, String, String, String) - Method in class uk.ac.ic.doc.automed.reps.Schema
Returns the Schema which is the result of applying a CONTRACT transformation.
applyDeleteTransformation(SchemaObject, String, String) - Method in class uk.ac.ic.doc.automed.reps.Schema
Returns the Schema which is the result of applying a DELETE transformation.
applyDeleteTransformation(SchemaObject, String, String, String) - Method in class uk.ac.ic.doc.automed.reps.Schema
Returns the Schema which is the result of applying a DELETE transformation.
applyExtendTransformation(Construct, Object[], String, String) - Method in class uk.ac.ic.doc.automed.reps.Schema
Returns the Schema which is the result of applying an EXTEND transformation.
applyExtendTransformation(Construct, String, String, String) - Method in class uk.ac.ic.doc.automed.reps.Schema
 
applyExtendTransformation(Construct, Object[], String, String, String) - Method in class uk.ac.ic.doc.automed.reps.Schema
Returns the Schema which is the result of applying an EXTEND transformation.
applyIdent(Object[]) - Static method in class uk.ac.ic.doc.automed.editor.Gui
 
applyIdentTransformation(Schema) - Method in class uk.ac.ic.doc.automed.reps.Schema
Links this schema to another schema which should have exactly the same structure, i.e.
applyPathway(Transformation[], Schema) - Static method in class uk.ac.bbk.dcs.automed.evolution.EvolutionUtility
 
applyPathway(Transformation[], Schema) - Static method in class uk.ac.bbk.dcs.automed.evolution2.EvolutionUtility
 
applyRenameTransformation(SchemaObject, Object[]) - Method in class uk.ac.ic.doc.automed.reps.Schema
Returns the Schema which is the result of applying a RENAME transformation.
applyRenameTransformation(SchemaObject, Object[], String) - Method in class uk.ac.ic.doc.automed.reps.Schema
Returns the Schema which is the result of applying a RENAME transformation.
applyRetract(Object[]) - Static method in class uk.ac.ic.doc.automed.editor.Gui
 
applyToSpineCalls - Variable in class uk.ac.bbk.dcs.automed.qproc.evaluate.Evaluator
 
applyTransformationToSchema(Transformation, Schema) - Static method in class uk.ac.bbk.dcs.automed.evolution.EvolutionUtility
This method is given transformation and a schema arguments.
applyTransformationToSchema(Transformation, Schema) - Static method in class uk.ac.bbk.dcs.automed.evolution2.EvolutionUtility
This method is given transformation and a schema arguments.
AppToolKit - Class in uk.ac.ic.doc.automed.p2p
 
AppToolKit() - Constructor for class uk.ac.ic.doc.automed.p2p.AppToolKit
Creates a new instance of AppToolKit
AppToolKit.NodeConfig - Class in uk.ac.ic.doc.automed.p2p
Inner class to define a server configuration
AppToolKit.NodeConfig(String, String, String, int, int, int, int, int) - Constructor for class uk.ac.ic.doc.automed.p2p.AppToolKit.NodeConfig
 
AppToolKit.NodeConfig(String, Properties) - Constructor for class uk.ac.ic.doc.automed.p2p.AppToolKit.NodeConfig
Alternatively, we can create a config object with loads of properties
and then use getter methods to access them.
areAllToLayoutObjLocked() - Method in class uk.ac.ic.doc.automed.editor.autolayout.AutoLayoutERObject
 
areRelated(SchemaObject[], SchemaObject[], SemanticRelationship, boolean) - Method in class uk.ac.ic.doc.automed.matching.Integrator
Returns a list of SchemaElementPair arrays with all the combinations of related schema elements.
areRelativesMaximal() - Method in class uk.ac.ic.doc.automed.reps.Network
 
areSchemasIntegrated() - Method in class uk.ac.ic.doc.automed.editor.MatchingTool
 
arithmeticFunction() - Method in class uk.ac.bbk.dcs.automed.qproc.translators.xquery.XQuery2IQL
 
arithmOp() - Method in class uk.ac.bbk.dcs.automed.qproc.translators.xquery.XQuery2IQL
 
arity - Variable in class uk.ac.bbk.dcs.automed.qproc.functions.BuiltInFunction
 
ARROW - Static variable in class uk.ac.ic.doc.rodex.qproc.Util
 
AS - Static variable in interface uk.ac.bbk.dcs.automed.qproc.translators.xquery.XQuery2IQLConstants
 
ASG - Class in uk.ac.bbk.dcs.automed.qproc.iql
Every IQL query is internally represented as an Abstract Syntax Graph (ASG).
ASG() - Constructor for class uk.ac.bbk.dcs.automed.qproc.iql.ASG
 
ASG(Cell) - Constructor for class uk.ac.bbk.dcs.automed.qproc.iql.ASG
 
ASG(String) - Constructor for class uk.ac.bbk.dcs.automed.qproc.iql.ASG
 
ASG(File) - Constructor for class uk.ac.bbk.dcs.automed.qproc.iql.ASG
 
asgArea - Variable in class uk.ac.ic.doc.automed.editor.IQLTool
 
ASGCollection - Class in uk.ac.bbk.dcs.automed.qproc.iql
 
ASGCollection(Cell) - Constructor for class uk.ac.bbk.dcs.automed.qproc.iql.ASGCollection
 
ASGCollection(String) - Constructor for class uk.ac.bbk.dcs.automed.qproc.iql.ASGCollection
 
ASGCollection(File) - Constructor for class uk.ac.bbk.dcs.automed.qproc.iql.ASGCollection
 
ASGCollectionIterator - Class in uk.ac.bbk.dcs.automed.qproc.iql
 
ASGComprehension - Class in uk.ac.bbk.dcs.automed.qproc.iql
 
ASGComprehensionMiniCon - Class in uk.ac.bbk.dcs.automed.qproc.iql
 
ASGExplore - Class in uk.ac.ic.doc.rodex.qproc
 
ASGExplore(ASG) - Constructor for class uk.ac.ic.doc.rodex.qproc.ASGExplore
Creates a new instance of ASGExplore dmle 22/11/2005
ASGObjectBuilder - Class in uk.ac.ic.doc.automed.p2p.tree
 
ASGObjectBuilder(Root) - Constructor for class uk.ac.ic.doc.automed.p2p.tree.ASGObjectBuilder
Creates a new instance of SchemaObjectBuilder
ASGQuery - Class in uk.ac.ic.doc.automed.qproc
ASGQuery.java

Extends ASG class to introduce extra properties such as queryID and {@link QueryDescription)
ASGQuery() - Constructor for class uk.ac.ic.doc.automed.qproc.ASGQuery
 
ASGTuple - Class in uk.ac.bbk.dcs.automed.qproc.iql
 
ASGTuple(Cell) - Constructor for class uk.ac.bbk.dcs.automed.qproc.iql.ASGTuple
 
ASGTuple(String) - Constructor for class uk.ac.bbk.dcs.automed.qproc.iql.ASGTuple
 
ASK - Static variable in class uk.ac.ic.doc.automed.p2p.protocol.P2PConstants
performative
assemblePackets(Vector, int) - Static method in class uk.ac.ic.doc.automed.p2p.util.Util
Assemble UDP fragments together
assertProtocol(String) - Static method in class uk.ac.ic.doc.automed.reps.Protocol
Returns the Protocol with a certain name, creating it if it does not already exist..
assertType(String, String) - Method in class uk.ac.ic.doc.automed.reps.TypeHierarchy
Make sure @param typeName is in the type hierarchy.
ASSIGN - Static variable in interface uk.ac.bbk.dcs.automed.qproc.translators.xquery.XQuery2IQLConstants
 
assignCIDs(Document) - Static method in class uk.ac.bbk.dcs.automed.xml.wrappers.XMLWrapper
Assigns UIDs to the schema document supplied.
asString(Document) - Static method in class uk.ac.ic.doc.automed.p2p.util.XmlHandler
 
AsynchThread - Class in uk.ac.ic.doc.automed.util.thread
 
AsynchThread(String, Threadable) - Constructor for class uk.ac.ic.doc.automed.util.thread.AsynchThread
Creates a new instance of TimedThread
at(int) - Method in class uk.ac.bbk.dcs.automed.qproc.functions.ModifiedArray
 
AT - Static variable in interface uk.ac.bbk.dcs.automed.qproc.translators.xquery.XQuery2IQLConstants
 
AT_LEAST_ONE - Static variable in class uk.ac.ic.doc.automed.editor.CommandLineDriver
 
atDebugLevel(int) - Static method in class uk.ac.ic.doc.automed.editor.XMLSchemaEditor
Determine is debug is at or above a certain level.
atDebugLevel(int) - Static method in class uk.ac.ic.doc.automed.STR
Return true if the debug level set by STR.setDebugLevel(int) is at least at a certain level.
atDebugLevel(int) - Static method in class uk.ac.ic.doc.automed.util.Debugger
Return true if the debug level set by Debugger.setDebugLevel(int) is at least at a certain level.
atDebugLevel(int) - Static method in class uk.ac.ic.doc.automed.wrappers.AutoMedWrapper
Determine is debug is at or above a certain level.
AtomicViewMap - Class in uk.ac.bbk.dcs.automed.qproc.reformulate
This class creates atomic views from the Automed Transformations.
AtomicViewMap(Schema, Schema, QueryProcessorConfiguration, int) - Constructor for class uk.ac.bbk.dcs.automed.qproc.reformulate.AtomicViewMap
Constructs a new AtomicViewMap object for the input source and target schemas, then populates it.
atSectionDebugLevel(int, int) - Static method in class uk.ac.ic.doc.automed.STR
Tests whether the section of code has been set to at least the debug level specified.
atSectionDebugLevel(int, int) - Static method in class uk.ac.ic.doc.automed.util.Debugger
Tests whether the section of code has been set to at least the debug level specified.
attachParent(AutoLayoutTreeObject, int) - Static method in class uk.ac.ic.doc.automed.editor.autolayout.AutoLayoutTreeObject
Attaches the specified node to its children, setting offsets.
ATTRIB_CACHE_MODE - Static variable in class uk.ac.ic.doc.rodex.qproc.QualityIndicator
 
ATTRIB_CACHE_RESULT_EXPIRED_OK - Static variable in class uk.ac.ic.doc.rodex.qproc.QualityIndicator
 
ATTRIB_COST - Static variable in class uk.ac.ic.doc.rodex.qproc.QualityIndicator
 
ATTRIB_FRESHNESS - Static variable in class uk.ac.ic.doc.rodex.qproc.QualityIndicator
 
ATTRIB_PREFER_CACHE - Static variable in class uk.ac.ic.doc.rodex.qproc.QualityIndicator
 
ATTRIB_QLTY_DS - Static variable in class uk.ac.ic.doc.rodex.qproc.QualityIndicator
 
ATTRIB_QLTY_INFO - Static variable in class uk.ac.ic.doc.rodex.qproc.QualityIndicator
 
ATTRIB_QLTY_PW - Static variable in class uk.ac.ic.doc.rodex.qproc.QualityIndicator
 
ATTRIB_QUERY - Static variable in class uk.ac.ic.doc.rodex.qproc.QueryDescription
 
ATTRIB_RESULT_TTL - Static variable in class uk.ac.ic.doc.rodex.qproc.QualityIndicator
 
ATTRIB_SCHEMA_NAME - Static variable in class uk.ac.ic.doc.rodex.qproc.QueryDescription
 
attribute - Static variable in class uk.ac.bbk.dcs.automed.xml.XMLConstants
 
Attribute - Class in uk.ac.ic.doc.automed.wrappers.xsdomobject
 
Attribute(String, String, boolean) - Constructor for class uk.ac.ic.doc.automed.wrappers.xsdomobject.Attribute
Creates a new instance of Attribute
AttributeDomain - Class in uk.ac.ic.doc.rodex.reps
AttributeDomain.java Represents an attribute's domain
AttributeDomain(String, int, int, int) - Constructor for class uk.ac.ic.doc.rodex.reps.AttributeDomain
Creates a new instance of AttributeDomain
AttributeJaccardExistenceModule - Class in uk.ac.ic.doc.automed.matching.modules.probability.binary
The module that compares the schema elements by examining if they have common instances
AttributeJaccardExistenceModule(SchemaElementPair[]) - Constructor for class uk.ac.ic.doc.automed.matching.modules.probability.binary.AttributeJaccardExistenceModule
 
AttributeJaccardNameModule - Class in uk.ac.ic.doc.automed.matching.modules.probability.binary
The module that compares the names of the schema elements
AttributeJaccardNameModule(SchemaElementPair[]) - Constructor for class uk.ac.ic.doc.automed.matching.modules.probability.binary.AttributeJaccardNameModule
 
AttributePrecisionModule - Class in uk.ac.ic.doc.automed.matching.modules.probability.binary
The module that compares the schema elements by examining the precision of their instances
AttributePrecisionModule(SchemaElementPair[]) - Constructor for class uk.ac.ic.doc.automed.matching.modules.probability.binary.AttributePrecisionModule
 
authenticate() - Method in class uk.ac.ic.doc.automed.p2p.AuthenticationHelper
Authenticate an automed peer to the network
authenticate() - Method in class uk.ac.ic.doc.automed.p2p.AutoMedPeer
Authenticate using the authentication helper
AUTHENTICATION - Static variable in class uk.ac.ic.doc.automed.p2p.protocol.P2PConstants
 
authentication - Variable in class uk.ac.ic.doc.rodex.p2p.messages.applicationlayer.HelloMsg
 
AuthenticationException - Exception in uk.ac.ic.doc.automed.p2p
 
AuthenticationException(String) - Constructor for exception uk.ac.ic.doc.automed.p2p.AuthenticationException
Creates a new instance of HandlerNotFoundException
AuthenticationException(String, Throwable) - Constructor for exception uk.ac.ic.doc.automed.p2p.AuthenticationException
Creates a new instance of HandlerNotFoundException
AuthenticationHelper - Class in uk.ac.ic.doc.automed.p2p
 
AuthenticationHelper(AutoMedPeer) - Constructor for class uk.ac.ic.doc.automed.p2p.AuthenticationHelper
Creates a new instance of AuthenticationHelper
AuthenticationTuple - Class in uk.ac.ic.doc.rodex.p2p.messages.applicationlayer
AuthenticationTuple.java

Represents authentication tuple
AuthenticationTuple(String, String, String) - Constructor for class uk.ac.ic.doc.rodex.p2p.messages.applicationlayer.AuthenticationTuple
Creates a new instance of AuthenticationTuple
AutoLayout - Class in uk.ac.ic.doc.automed.editor.autolayout
 
AutoLayout(AutoLayoutSchemaObject) - Constructor for class uk.ac.ic.doc.automed.editor.autolayout.AutoLayout
Creates a new instance of AutoLayout
AutoLayoutERObject - Class in uk.ac.ic.doc.automed.editor.autolayout
 
AutoLayoutERObject(Positionable) - Constructor for class uk.ac.ic.doc.automed.editor.autolayout.AutoLayoutERObject
 
AutoLayoutPositionable - Class in uk.ac.ic.doc.automed.editor.autolayout
Base class for ale others AutoLayout* classes.
AutoLayoutPositionable(Positionable) - Constructor for class uk.ac.ic.doc.automed.editor.autolayout.AutoLayoutPositionable
Creates a new instance of AutoLayoutPositionable
autoLayoutPositionablesTable - Static variable in class uk.ac.ic.doc.automed.editor.autolayout.AutoLayoutPositionable
HashMap which map SchemaObjects to AutoLayput* objects.
AutoLayoutSchemaObject - Class in uk.ac.ic.doc.automed.editor.autolayout
 
AutoLayoutSchemaObject(Positionable) - Constructor for class uk.ac.ic.doc.automed.editor.autolayout.AutoLayoutSchemaObject
Creates a new instance of AutoLayoutPositionableect
AutoLayoutSpringObject - Class in uk.ac.ic.doc.automed.editor.autolayout
Class to implement Kamada and Kawai's spring algorithm described in Information Processing Letters Volume 31, Issue 1, Pages 1-56.
AutoLayoutSpringObject(Positionable) - Constructor for class uk.ac.ic.doc.automed.editor.autolayout.AutoLayoutSpringObject
Creates a new instance of AutoLayoutSpringObject
AutoLayoutTreeObject - Class in uk.ac.ic.doc.automed.editor.autolayout
Class to implement tree autolayout algorithm.
AutoLayoutTreeObject(Positionable) - Constructor for class uk.ac.ic.doc.automed.editor.autolayout.AutoLayoutTreeObject
 
AutoLayoutTreeObject(Positionable, AutoLayoutTreeObject, AutoLayoutTreeObject, AutoLayoutTreeObject) - Constructor for class uk.ac.ic.doc.automed.editor.autolayout.AutoLayoutTreeObject
Creates a new instance of AutoLayoutTreeObjectect
automed - Variable in class uk.ac.ic.doc.automed.wrappers.SQLWrapperFactory
 
AUTOMED_OBJECTS - Static variable in class uk.ac.ic.doc.automed.p2p.protocol.P2PConstants
 
AUTOMED_SQL_MODEL_COLUMN - Static variable in class uk.ac.ic.doc.automed.wrappers.SQLWrapperFactory
 
AUTOMED_SQL_MODEL_FOREIGN_KEY - Static variable in class uk.ac.ic.doc.automed.wrappers.SQLWrapperFactory
 
AUTOMED_SQL_MODEL_INDEX - Static variable in class uk.ac.ic.doc.automed.wrappers.SQLWrapperFactory
 
AUTOMED_SQL_MODEL_NOTNULL_CONSTRAINT - Static variable in class uk.ac.ic.doc.automed.wrappers.SQLWrapperFactory
 
AUTOMED_SQL_MODEL_PRIMARY_KEY - Static variable in class uk.ac.ic.doc.automed.wrappers.SQLWrapperFactory
 
AUTOMED_SQL_MODEL_TABLE - Static variable in class uk.ac.ic.doc.automed.wrappers.SQLWrapperFactory
 
AUTOMED_USER_DIR - Static variable in class uk.ac.ic.doc.automed.p2p.AppToolKit
 
AutoMedBoolean - Class in uk.ac.ic.doc.automed.wrappers
Provides generic representation boolean values.
AutoMedBoolean(boolean) - Constructor for class uk.ac.ic.doc.automed.wrappers.AutoMedBoolean
Create a new AutoMedBoolean
AutoMedBoolean(String) - Constructor for class uk.ac.ic.doc.automed.wrappers.AutoMedBoolean
Create a new AutoMedBoolean from a String value.
AutoMedBoolean() - Constructor for class uk.ac.ic.doc.automed.wrappers.AutoMedBoolean
Create a new AutoMedBoolean that is null in value.
AutoMedException - Exception in uk.ac.ic.doc.automed
The class root of all AutoMed generated exceptions.
AutoMedException(String) - Constructor for exception uk.ac.ic.doc.automed.AutoMedException
 
AutoMedException() - Constructor for exception uk.ac.ic.doc.automed.AutoMedException
 
AutoMedException(Throwable) - Constructor for exception uk.ac.ic.doc.automed.AutoMedException
 
AutoMedException(String, Throwable) - Constructor for exception uk.ac.ic.doc.automed.AutoMedException
 
AutoMedFloat - Class in uk.ac.ic.doc.automed.wrappers
Provides generic representation of floating values with abritrary precision.
AutoMedFloat(String) - Constructor for class uk.ac.ic.doc.automed.wrappers.AutoMedFloat
Create a new AutoMedFloat from text, creating a null value if the text cannon be parsed.
AutoMedFloat(float, int) - Constructor for class uk.ac.ic.doc.automed.wrappers.AutoMedFloat
Create a new AutoMedFloat from a 32 bit floating point value.
AutoMedFloat(double, int) - Constructor for class uk.ac.ic.doc.automed.wrappers.AutoMedFloat
Create a new AutoMedFloat from a 64 bit floating point value.
AutoMedFloat() - Constructor for class uk.ac.ic.doc.automed.wrappers.AutoMedFloat
Create a new AutoMedFloat that is null in value
AutoMedInteger - Class in uk.ac.ic.doc.automed.wrappers
Provides generic representation of integer values with up to 64 bit precision.
AutoMedInteger(String) - Constructor for class uk.ac.ic.doc.automed.wrappers.AutoMedInteger
Create a new AutoMedInteger from text, creating a null value if the text cannon be parsed.
AutoMedInteger(int, int) - Constructor for class uk.ac.ic.doc.automed.wrappers.AutoMedInteger
Create a new AutoMedInteger from a 32 bit integer value.
AutoMedInteger(long, int) - Constructor for class uk.ac.ic.doc.automed.wrappers.AutoMedInteger
Create a new AutoMedInteger
AutoMedInteger(BigInteger) - Constructor for class uk.ac.ic.doc.automed.wrappers.AutoMedInteger
Create a new AutoMedInteger from a BigInteger.
AutoMedInteger() - Constructor for class uk.ac.ic.doc.automed.wrappers.AutoMedInteger
Create a new AutoMedInteger that is a null value
AutoMedMessagingHelper - Class in uk.ac.ic.doc.automed.p2p
 
AutoMedMessagingHelper(AutoMedPeer) - Constructor for class uk.ac.ic.doc.automed.p2p.AutoMedMessagingHelper
Creates a new instance of AutoMedMessagingHelper
automedModelName - Variable in class uk.ac.ic.doc.automed.wrappers.AutoMedWrapperFactory
 
AutoMedObject - Class in uk.ac.ic.doc.automed.p2p.tree
 
AutoMedObject(PersistentKey) - Constructor for class uk.ac.ic.doc.automed.p2p.tree.AutoMedObject
 
AutoMedObject(PersistentObject) - Constructor for class uk.ac.ic.doc.automed.p2p.tree.AutoMedObject
 
AutoMedPeer - Class in uk.ac.ic.doc.automed.p2p
Represent the AutoMed Repository in this Java Virtual Machine (JVM) as a peer on a peer-to-peer (P2P) network.
AutoMedPeer(String, PeerStateHandler) - Constructor for class uk.ac.ic.doc.automed.p2p.AutoMedPeer
Create the one AutoMedPeer that is allowed in any JVM: to prevent more than one being created, this is a private method, and you must call #newAutoMedPeer() to create the peer.
AutoMedPeer.PeerProcessDescription - Class in uk.ac.ic.doc.automed.p2p
 
AutoMedPeer.PeerProcessDescription(String, String) - Constructor for class uk.ac.ic.doc.automed.p2p.AutoMedPeer.PeerProcessDescription
 
AutoMedPeer.PeerProcessDescription(String, String, int) - Constructor for class uk.ac.ic.doc.automed.p2p.AutoMedPeer.PeerProcessDescription
 
AutoMedQuery - Class in uk.ac.ic.doc.automed.wrappers
A generic representation of query expressions as trees, where each AutoMedQuery has an operator type, and 0 or more fields that have a field type
AutoMedQuery(AutoMedQueryToken, Object[]) - Constructor for class uk.ac.ic.doc.automed.wrappers.AutoMedQuery
 
AutoMedQuery(AutoMedQueryToken, Object) - Constructor for class uk.ac.ic.doc.automed.wrappers.AutoMedQuery
 
AutoMedQueryToken - Class in uk.ac.ic.doc.automed.wrappers
A generic representation of query langauge tokens
AutoMedResult - Class in uk.ac.ic.doc.automed.wrappers
Provides a representation of the data associated with a scheme in an AutoMed Schema.
AutoMedResult(int) - Constructor for class uk.ac.ic.doc.automed.wrappers.AutoMedResult
Create a new AutoMedResult with a fixed size of tuple in the resultCache
AutoMedString - Class in uk.ac.ic.doc.automed.wrappers
Provides generic representation of string values of abritrary size.
AutoMedString(String) - Constructor for class uk.ac.ic.doc.automed.wrappers.AutoMedString
Create a new AutoMedString
AutoMedTime - Class in uk.ac.ic.doc.automed.wrappers
Provides generic representation of time values in GMT.
AutoMedTime(long, int) - Constructor for class uk.ac.ic.doc.automed.wrappers.AutoMedTime
Create a new AutoMedTime, measured as the number of milliseconds since 1st January 1970, 00:00:00 GMT
AutoMedTime(Date, int) - Constructor for class uk.ac.ic.doc.automed.wrappers.AutoMedTime
Create a new AutoMedTime
AutoMedTime() - Constructor for class uk.ac.ic.doc.automed.wrappers.AutoMedTime
Create a new AutoMedTime that is a null value
AutoMedToXSDOM - Class in uk.ac.ic.doc.automed.reps
 
AutoMedToXSDOM(Schema) - Constructor for class uk.ac.ic.doc.automed.reps.AutoMedToXSDOM
Creates a new instance of AutoMedToXSDOM
AutoMedTreeException - Exception in uk.ac.ic.doc.automed.p2p.tree
 
AutoMedTreeException() - Constructor for exception uk.ac.ic.doc.automed.p2p.tree.AutoMedTreeException
 
AutoMedTreeException(String) - Constructor for exception uk.ac.ic.doc.automed.p2p.tree.AutoMedTreeException
 
AutoMedTreeException(Throwable) - Constructor for exception uk.ac.ic.doc.automed.p2p.tree.AutoMedTreeException
 
AutoMedTreeException(String, Throwable) - Constructor for exception uk.ac.ic.doc.automed.p2p.tree.AutoMedTreeException
 
AutoMedTuple - Class in uk.ac.ic.doc.automed.wrappers
A structure to hold one tuple of data, to be used by AutoMedResult as the basis for storing sets, lists or bags of tuples.
AutoMedTuple(AutoMedResult, int, int) - Constructor for class uk.ac.ic.doc.automed.wrappers.AutoMedTuple
Create a new tuple belonging to row i and with nc attributes
AutoMedType - Class in uk.ac.ic.doc.automed.wrappers
Provides a base for the representation of basic types supported by AutoMed.
AutoMedType() - Constructor for class uk.ac.ic.doc.automed.wrappers.AutoMedType
 
AutoMedWrapper - Class in uk.ac.ic.doc.automed.wrappers
An AutoMedWrapper represents an open connection to a datasource.
AutoMedWrapper() - Constructor for class uk.ac.ic.doc.automed.wrappers.AutoMedWrapper
 
AutoMedWrapper(AccessMethod, String) - Constructor for class uk.ac.ic.doc.automed.wrappers.AutoMedWrapper
Generate a new wrapper instance from information held in the repository about how to access a data source.
AutoMedWrapperFactory - Class in uk.ac.ic.doc.automed.wrappers
An AutoMedWrapperFactory class able to produce AutoMedWrapper instances, together with any data that the wrapper requires to be present in the repository.
AutoMedWrapperFactory() - Constructor for class uk.ac.ic.doc.automed.wrappers.AutoMedWrapperFactory
 
AutoMedXMLAttText - Static variable in class uk.ac.bbk.dcs.automed.qproc.translators.xquery.XQuery2IQL
 
AutoMedXMLText - Static variable in class uk.ac.bbk.dcs.automed.qproc.translators.xquery.XQuery2IQL
 
AutoRepException - Exception in uk.ac.ic.doc.automed.reps
The class of exceptions generated by the uk.ac.ic.doc.automed.reps package.
AutoRepException(String) - Constructor for exception uk.ac.ic.doc.automed.reps.AutoRepException
Creates an AutoRepException.
AutoRepException(String, Exception) - Constructor for exception uk.ac.ic.doc.automed.reps.AutoRepException
Creates an AutoRepException.
Average - Class in uk.ac.bbk.dcs.automed.qproc.functions.collections
 
Average() - Constructor for class uk.ac.bbk.dcs.automed.qproc.functions.collections.Average
 
Averages - Class in uk.ac.ic.doc.automed.matching
 
Averages(double[]) - Constructor for class uk.ac.ic.doc.automed.matching.Averages
 
awf - Variable in class uk.ac.ic.doc.automed.wrappers.AutoMedWrapper
 

B

backButton - Variable in class uk.ac.ic.doc.automed.editor.IQLTool
 
backup(int) - Method in class uk.ac.bbk.dcs.automed.qproc.annotate.grammars.schemes.SimpleCharStream
 
backup(int) - Method in class uk.ac.bbk.dcs.automed.qproc.annotate.grammars.simpleComp.SimpleCharStream
 
backup(int) - Method in class uk.ac.bbk.dcs.automed.qproc.annotate.grammars.simpleCompAppend.SimpleCharStream
 
backup(int) - Method in class uk.ac.bbk.dcs.automed.qproc.annotate.grammars.simpleCompAppendMonus.SimpleCharStream
 
backup(int) - Method in class uk.ac.bbk.dcs.automed.qproc.translators.xquery.SimpleCharStream
 
BadSchemaException - Exception in uk.ac.ic.doc.automed.reps
The class of exceptions generated when the contents of an intentional schema materialized via a particular transformation pathway are not the same as those of the same schema materialized via its default transformation pathway (path to the cloesest extensional schema).
BadSchemaException(String, Schema) - Constructor for exception uk.ac.ic.doc.automed.reps.BadSchemaException
Creates a BadSchemaException.
Bag2List - Class in uk.ac.bbk.dcs.automed.qproc.functions.typeConversion
 
Bag2List() - Constructor for class uk.ac.bbk.dcs.automed.qproc.functions.typeConversion.Bag2List
 
Bag2Set - Class in uk.ac.bbk.dcs.automed.qproc.functions.typeConversion
 
Bag2Set() - Constructor for class uk.ac.bbk.dcs.automed.qproc.functions.typeConversion.Bag2Set
 
banner(int) - Static method in class uk.ac.bbk.dcs.automed.xml.utilities.PrintUtility
Prints a line of num stars.
banner() - Static method in class uk.ac.bbk.dcs.automed.xml.utilities.PrintUtility
Prints a line of 90 stars.
Bar - Static variable in class uk.ac.bbk.dcs.automed.qproc.iql.QSym
 
baseName - Variable in class uk.ac.ic.doc.automed.wrappers.AutoMedWrapperFactory
 
BASIC_ALGORITHM - Static variable in class uk.ac.ic.doc.automed.tml.PathwayOptimiser
 
BAVViewMap - Class in uk.ac.bbk.dcs.automed.qproc.reformulate
Class containing BAV composite views between a single source schema and a single target schema.
BAVViewMap(Schema, Schema, QueryProcessorConfiguration) - Constructor for class uk.ac.bbk.dcs.automed.qproc.reformulate.BAVViewMap
This constructor is called from CompositeViewMap class getInstance() method.
BCOMP - Static variable in interface uk.ac.bbk.dcs.automed.qproc.annotate.grammars.simpleComp.SimpleCompConstants
 
BCOMP - Static variable in interface uk.ac.bbk.dcs.automed.qproc.annotate.grammars.simpleCompAppend.SimpleCompAppendConstants
 
BCOMP - Static variable in interface uk.ac.bbk.dcs.automed.qproc.annotate.grammars.simpleCompAppendMonus.SimpleCompAppendMonusConstants
 
BComprehension - Class in uk.ac.bbk.dcs.automed.qproc.functions.internal
 
BComprehension() - Constructor for class uk.ac.bbk.dcs.automed.qproc.functions.internal.BComprehension
 
beforeTranslation - Variable in class uk.ac.bbk.dcs.automed.qproc.OldQueryProcessor
 
beforeTranslation - Variable in class uk.ac.bbk.dcs.automed.qproc.QueryProcessor
 
beforeTranslation - Variable in class uk.ac.bbk.dcs.automed.qproc.TempQueryProcessor
 
beginColumn - Variable in class uk.ac.bbk.dcs.automed.qproc.annotate.grammars.schemes.Token
beginLine and beginColumn describe the position of the first character of this token; endLine and endColumn describe the position of the last character of this token.
beginColumn - Variable in class uk.ac.bbk.dcs.automed.qproc.annotate.grammars.simpleComp.Token
beginLine and beginColumn describe the position of the first character of this token; endLine and endColumn describe the position of the last character of this token.
beginColumn - Variable in class uk.ac.bbk.dcs.automed.qproc.annotate.grammars.simpleCompAppend.Token
beginLine and beginColumn describe the position of the first character of this token; endLine and endColumn describe the position of the last character of this token.
beginColumn - Variable in class uk.ac.bbk.dcs.automed.qproc.annotate.grammars.simpleCompAppendMonus.Token
beginLine and beginColumn describe the position of the first character of this token; endLine and endColumn describe the position of the last character of this token.
beginColumn - Variable in class uk.ac.bbk.dcs.automed.qproc.translators.xquery.Token
beginLine and beginColumn describe the position of the first character of this token; endLine and endColumn describe the position of the last character of this token.
beginLine - Variable in class uk.ac.bbk.dcs.automed.qproc.annotate.grammars.schemes.Token
beginLine and beginColumn describe the position of the first character of this token; endLine and endColumn describe the position of the last character of this token.
beginLine - Variable in class uk.ac.bbk.dcs.automed.qproc.annotate.grammars.simpleComp.Token
beginLine and beginColumn describe the position of the first character of this token; endLine and endColumn describe the position of the last character of this token.
beginLine - Variable in class uk.ac.bbk.dcs.automed.qproc.annotate.grammars.simpleCompAppend.Token
beginLine and beginColumn describe the position of the first character of this token; endLine and endColumn describe the position of the last character of this token.
beginLine - Variable in class uk.ac.bbk.dcs.automed.qproc.annotate.grammars.simpleCompAppendMonus.Token
beginLine and beginColumn describe the position of the first character of this token; endLine and endColumn describe the position of the last character of this token.
beginLine - Variable in class uk.ac.bbk.dcs.automed.qproc.translators.xquery.Token
beginLine and beginColumn describe the position of the first character of this token; endLine and endColumn describe the position of the last character of this token.
BeginToken() - Method in class uk.ac.bbk.dcs.automed.qproc.annotate.grammars.schemes.SimpleCharStream
 
BeginToken() - Method in class uk.ac.bbk.dcs.automed.qproc.annotate.grammars.simpleComp.SimpleCharStream
 
BeginToken() - Method in class uk.ac.bbk.dcs.automed.qproc.annotate.grammars.simpleCompAppend.SimpleCharStream
 
BeginToken() - Method in class uk.ac.bbk.dcs.automed.qproc.annotate.grammars.simpleCompAppendMonus.SimpleCharStream
 
BeginToken() - Method in class uk.ac.bbk.dcs.automed.qproc.translators.xquery.SimpleCharStream
 
BidirectionalDegree - Class in uk.ac.ic.doc.automed.matching
The BidirectionalDegree class represents the bidirectional similarity degrees for two schema elements.
BidirectionalDegree(double, double) - Constructor for class uk.ac.ic.doc.automed.matching.BidirectionalDegree
Constructs a BidirectionalDegree object based on the specified forward and backward similarity degrees.
bidirectionalDegrees - Variable in class uk.ac.ic.doc.automed.matching.modules.AbstractModule
The Hashtable storing the bidirectional degrees.
BidirectionalMap - Class in uk.ac.ic.doc.automed.matching
The BidirectionalMap class represents the map that defines the areas for each semantic relationship.
BidirectionalMap(double, double, double) - Constructor for class uk.ac.ic.doc.automed.matching.BidirectionalMap
Constructs a BidirectionalMap object based on the specified thresholds.
BINARY_CLASS - Static variable in class uk.ac.ic.doc.automed.wrappers.AutoMedQuery
 
BLSB - Static variable in class uk.ac.bbk.dcs.automed.qproc.iql.QSym
 
Books - Class in uk.ac.bbk.dcs.automed.xml.experiments.thesis
Class Task Description
Books() - Constructor for class uk.ac.bbk.dcs.automed.xml.experiments.thesis.Books
 
Books1 - Class in uk.ac.bbk.dcs.automed.xml.experiments.thesis
Class Task Description
Books1() - Constructor for class uk.ac.bbk.dcs.automed.xml.experiments.thesis.Books1
 
Books1Query - Class in uk.ac.bbk.dcs.automed.xml.experiments.thesis
 
Books1Query() - Constructor for class uk.ac.bbk.dcs.automed.xml.experiments.thesis.Books1Query
 
Books2 - Class in uk.ac.bbk.dcs.automed.xml.experiments.thesis
Class Task Description
Books2() - Constructor for class uk.ac.bbk.dcs.automed.xml.experiments.thesis.Books2
 
Books2Query - Class in uk.ac.bbk.dcs.automed.xml.experiments.thesis
 
Books2Query() - Constructor for class uk.ac.bbk.dcs.automed.xml.experiments.thesis.Books2Query
 
BooksQuery - Class in uk.ac.bbk.dcs.automed.xml.experiments.thesis
 
BooksQuery() - Constructor for class uk.ac.bbk.dcs.automed.xml.experiments.thesis.BooksQuery
 
BOOLEAN - Static variable in class uk.ac.bbk.dcs.automed.qproc.iql.TypeConstants
 
BOOLEAN - Static variable in class uk.ac.ic.doc.automed.wrappers.AutoMedQuery
 
BOOLEAN - Static variable in class uk.ac.ic.doc.automed.wrappers.AutoMedType
Type to represent a boolean true/false value.
BOOLEAN_TOKEN - Static variable in class uk.ac.ic.doc.automed.wrappers.AutoMedQuery
 
booleanValue() - Method in class uk.ac.ic.doc.automed.wrappers.AutoMedBoolean
Return a boolean representation of this AutoMedBoolean.
BOOLTOKEN - Static variable in interface uk.ac.bbk.dcs.automed.qproc.annotate.grammars.simpleComp.SimpleCompConstants
 
BOOLTOKEN - Static variable in interface uk.ac.bbk.dcs.automed.qproc.annotate.grammars.simpleCompAppend.SimpleCompAppendConstants
 
BOOLTOKEN - Static variable in interface uk.ac.bbk.dcs.automed.qproc.annotate.grammars.simpleCompAppendMonus.SimpleCompAppendMonusConstants
 
bounds - Variable in class uk.ac.ic.doc.automed.editor.DrawVertex
 
boundsCorrection - Variable in class uk.ac.ic.doc.automed.editor.autolayout.AutoLayoutSchemaObject
 
bridge(PolyLine, int, int, PolyLine, int, int) - Static method in class uk.ac.ic.doc.automed.editor.autolayout.AutoLayoutTreeObject
bridge
broker(PeerDescription, String, String) - Method in class uk.ac.ic.doc.automed.p2p.gui.PeerApplication
 
broker(PeerDescription) - Method in class uk.ac.ic.doc.automed.p2p.gui.PeerApplication
Ask a peer to act as a broker for a query, executing the query against its local data sources, and those of any other peers that the peer knows about that implement public schemas of that peer.
broker() - Method in class uk.ac.ic.doc.automed.p2p.gui.SchemaInfoFrame
 
BROKER_ALL - Static variable in class uk.ac.ic.doc.automed.p2p.protocol.P2PConstants
performative
BrokerAllQuery - Class in uk.ac.ic.doc.automed.p2p.messages.applicationlayer
 
BrokerAllQuery(List, String, String) - Constructor for class uk.ac.ic.doc.automed.p2p.messages.applicationlayer.BrokerAllQuery
 
BrokerAllQuery(AbstractMessage) - Constructor for class uk.ac.ic.doc.automed.p2p.messages.applicationlayer.BrokerAllQuery
 
BrokerRequestReceiver - Class in uk.ac.ic.doc.automed.p2p
 
BrokerRequestReceiver(AbstractMessage) - Constructor for class uk.ac.ic.doc.automed.p2p.BrokerRequestReceiver
 
BrokerRequestSender - Class in uk.ac.ic.doc.automed.p2p
 
BrokerRequestSender() - Constructor for class uk.ac.ic.doc.automed.p2p.BrokerRequestSender
 
bsingleton() - Method in class uk.ac.bbk.dcs.automed.qproc.iql.Cell
Returns the root of an ASG representing an empty bag
bufcolumn - Variable in class uk.ac.bbk.dcs.automed.qproc.annotate.grammars.schemes.SimpleCharStream
 
bufcolumn - Variable in class uk.ac.bbk.dcs.automed.qproc.annotate.grammars.simpleComp.SimpleCharStream
 
bufcolumn - Variable in class uk.ac.bbk.dcs.automed.qproc.annotate.grammars.simpleCompAppend.SimpleCharStream
 
bufcolumn - Variable in class uk.ac.bbk.dcs.automed.qproc.annotate.grammars.simpleCompAppendMonus.SimpleCharStream
 
bufcolumn - Variable in class uk.ac.bbk.dcs.automed.qproc.translators.xquery.SimpleCharStream
 
buffer - Variable in class uk.ac.bbk.dcs.automed.qproc.annotate.grammars.schemes.SimpleCharStream
 
buffer - Variable in class uk.ac.bbk.dcs.automed.qproc.annotate.grammars.simpleComp.SimpleCharStream
 
buffer - Variable in class uk.ac.bbk.dcs.automed.qproc.annotate.grammars.simpleCompAppend.SimpleCharStream
 
buffer - Variable in class uk.ac.bbk.dcs.automed.qproc.annotate.grammars.simpleCompAppendMonus.SimpleCharStream
 
buffer - Variable in class uk.ac.bbk.dcs.automed.qproc.translators.xquery.SimpleCharStream
 
bufline - Variable in class uk.ac.bbk.dcs.automed.qproc.annotate.grammars.schemes.SimpleCharStream
 
bufline - Variable in class uk.ac.bbk.dcs.automed.qproc.annotate.grammars.simpleComp.SimpleCharStream
 
bufline - Variable in class uk.ac.bbk.dcs.automed.qproc.annotate.grammars.simpleCompAppend.SimpleCharStream
 
bufline - Variable in class uk.ac.bbk.dcs.automed.qproc.annotate.grammars.simpleCompAppendMonus.SimpleCharStream
 
bufline - Variable in class uk.ac.bbk.dcs.automed.qproc.translators.xquery.SimpleCharStream
 
bufpos - Variable in class uk.ac.bbk.dcs.automed.qproc.annotate.grammars.schemes.SimpleCharStream
 
bufpos - Variable in class uk.ac.bbk.dcs.automed.qproc.annotate.grammars.simpleComp.SimpleCharStream
 
bufpos - Variable in class uk.ac.bbk.dcs.automed.qproc.annotate.grammars.simpleCompAppend.SimpleCharStream
 
bufpos - Variable in class uk.ac.bbk.dcs.automed.qproc.annotate.grammars.simpleCompAppendMonus.SimpleCharStream
 
bufpos - Variable in class uk.ac.bbk.dcs.automed.qproc.translators.xquery.SimpleCharStream
 
build(String) - Method in class uk.ac.bbk.dcs.automed.hdmstore.HdmWrapperFactory
 
buildAbstractMessage() - Method in class uk.ac.ic.doc.automed.p2p.messages.applicationlayer.TellBrokerQuery
 
buildCollectionSet(Element, Root) - Method in class uk.ac.ic.doc.automed.p2p.tree.TreeBuilder
 
BuildJTree - Class in uk.ac.ic.doc.automed.xmlschema.tree
 
BuildJTree(Document) - Constructor for class uk.ac.ic.doc.automed.xmlschema.tree.BuildJTree
Creates a new instance of BuildJTree
buildMainObjectClasses(Element, Root) - Method in class uk.ac.ic.doc.automed.p2p.tree.TreeBuilder
 
buildMessage(Document) - Method in class uk.ac.ic.doc.automed.p2p.messages.abstractlayer.MessageFactory
 
buildMessage(String, String[]) - Static method in class uk.ac.ic.doc.automed.p2p.protocol.P2PProtocol
 
buildMessage() - Method in class uk.ac.ic.doc.automed.p2p.protocol.Request
 
buildPathwayRequest(String, String) - Static method in class uk.ac.ic.doc.automed.p2p.protocol.P2PProtocol
 
buildPathwayToSourceRequest(String) - Static method in class uk.ac.ic.doc.automed.p2p.protocol.P2PProtocol
 
buildPortRequest(String) - Static method in class uk.ac.ic.doc.automed.p2p.protocol.P2PProtocol
 
buildQueryRequest(String, String) - Static method in class uk.ac.ic.doc.automed.p2p.protocol.P2PProtocol
 
buildRegisterRequest(String, int) - Static method in class uk.ac.ic.doc.automed.p2p.protocol.P2PProtocol
 
buildSchemaRequest(String) - Static method in class uk.ac.ic.doc.automed.p2p.protocol.P2PProtocol
 
buildTree() - Method in class uk.ac.ic.doc.automed.p2p.tree.TreeBuilder
 
BuildViewException - Exception in uk.ac.bbk.dcs.automed.qproc.reformulate
Exception to be used by all the classes related to building views.
BuildViewException(String) - Constructor for exception uk.ac.bbk.dcs.automed.qproc.reformulate.BuildViewException
Creates an BuildViewException when there has been no Exception that caused the error to discovered.
BuildViewException(String, Exception) - Constructor for exception uk.ac.bbk.dcs.automed.qproc.reformulate.BuildViewException
Creates an BuildViewException when it is acting as a wrapper for other Exceptions.
buildViews() - Method in class uk.ac.bbk.dcs.automed.qproc.reformulate.AtomicViewMap
Traverses the pathway between the source and the target schema and populates the AtomicViewMap with views between a single source schema and a single target schema.
buildViews() - Method in class uk.ac.bbk.dcs.automed.qproc.reformulate.BAVViewMap
Constructs the composite views
buildViews() - Method in class uk.ac.bbk.dcs.automed.qproc.reformulate.CompositeViewMap
 
buildViews(Map[]) - Method in class uk.ac.bbk.dcs.automed.qproc.reformulate.CompositeViewMap
 
buildViews() - Method in class uk.ac.bbk.dcs.automed.qproc.reformulate.GAVQueryReformulationProvider
Traverses BAV pathways and builds GAV views.
buildViews() - Method in class uk.ac.bbk.dcs.automed.qproc.reformulate.GAVViewMap
Constructs the composite views
buildViews() - Method in class uk.ac.bbk.dcs.automed.qproc.reformulate.LAVInvRulesViewMap
Constructs the composite views
BuiltInFunction - Class in uk.ac.bbk.dcs.automed.qproc.functions
Interface class for all functions.
BuiltInFunction() - Constructor for class uk.ac.bbk.dcs.automed.qproc.functions.BuiltInFunction
 
builtins - Variable in class uk.ac.bbk.dcs.automed.qproc.evaluate.Evaluator
 
builtinsTimeSpent - Variable in class uk.ac.bbk.dcs.automed.qproc.evaluate.Evaluator
 

C

CACHE_EVAL - Static variable in class uk.ac.ic.doc.automed.qproc.P2PQueryProcessorConfiguration
 
CACHE_MODE_ADAPTIVE - Static variable in class uk.ac.ic.doc.rodex.qproc.QualityIndicator
 
CACHE_MODE_ALWAYS - Static variable in class uk.ac.ic.doc.rodex.qproc.QualityIndicator
 
CACHE_MODE_NONE - Static variable in class uk.ac.ic.doc.rodex.qproc.QualityIndicator
 
CACHE_OPTI - Static variable in class uk.ac.ic.doc.automed.qproc.P2PQueryProcessorConfiguration
 
CACHE_REFO - Static variable in class uk.ac.ic.doc.automed.qproc.P2PQueryProcessorConfiguration
 
CACHE_RESULT - Static variable in interface uk.ac.ic.doc.automed.qproc.cache.CachePolicy
 
Cacheable - Interface in uk.ac.ic.doc.automed.util.cache
 
CacheContentDescription - Class in uk.ac.ic.doc.automed.util.cache
 
CacheContentDescription(String[], Object[][]) - Constructor for class uk.ac.ic.doc.automed.util.cache.CacheContentDescription
Creates a new instance of CacheContentDescription
cacheEnd - Variable in class uk.ac.bbk.dcs.automed.qproc.functions.internal.CallToWrapper
 
CacheException - Exception in uk.ac.ic.doc.automed.util.cache
 
CacheException(String, Throwable) - Constructor for exception uk.ac.ic.doc.automed.util.cache.CacheException
Creates a new instance of CacheIntegrityException
CacheException(String) - Constructor for exception uk.ac.ic.doc.automed.util.cache.CacheException
 
cacheInstanceCreated(String, Cacheable) - Method in interface uk.ac.ic.doc.automed.util.cache.CacheManagementListener
Handle the event where a new cache instance has been created
cacheInstanceCreated(String, Cacheable) - Method in class uk.ac.ic.doc.rodex.p2p.gui.CacheViewerPanel
 
CacheIntegrityException - Exception in uk.ac.ic.doc.automed.util.cache
 
CacheIntegrityException(String, Throwable) - Constructor for exception uk.ac.ic.doc.automed.util.cache.CacheIntegrityException
Creates a new instance of CacheIntegrityException
CacheIntegrityException(String) - Constructor for exception uk.ac.ic.doc.automed.util.cache.CacheIntegrityException
 
CacheItem - Class in uk.ac.ic.doc.automed.util.cache
 
CacheItem(String, String) - Constructor for class uk.ac.ic.doc.automed.util.cache.CacheItem
Creates a new instance of CacheItem
CacheItem(String) - Constructor for class uk.ac.ic.doc.automed.util.cache.CacheItem
 
CacheListener - Interface in uk.ac.ic.doc.automed.util.cache
 
CacheManagementListener - Interface in uk.ac.ic.doc.automed.util.cache
CacheManagementListener.java
CacheManager - Class in uk.ac.ic.doc.automed.qproc.cache
CacheManager.java

Responsible for creating a new query cache instance and manipulating the cache
CacheObjectBinding - Class in uk.ac.ic.doc.automed.qproc.cache
CacheObjectBinding.java

Custom binding of essential CacheItem attributes for persistency
CacheObjectBinding() - Constructor for class uk.ac.ic.doc.automed.qproc.cache.CacheObjectBinding
 
cacheOn - Variable in class uk.ac.bbk.dcs.automed.qproc.functions.internal.CallToWrapper
 
CachePolicy - Interface in uk.ac.ic.doc.automed.qproc.cache
CachePolicy.java
CachePolicy2 - Class in uk.ac.ic.doc.automed.qproc.cache
CachePolicy2.java Prefer live data
CachePolicy2() - Constructor for class uk.ac.ic.doc.automed.qproc.cache.CachePolicy2
Creates a new instance of CachePolicy
CachePolicy3 - Class in uk.ac.ic.doc.automed.qproc.cache
CachePolicy3.java Only use the case, do not cache at GUI
CachePolicy3() - Constructor for class uk.ac.ic.doc.automed.qproc.cache.CachePolicy3
Creates a new instance of CachePolicy
cacheRefreshed() - Method in interface uk.ac.ic.doc.automed.util.cache.CacheListener
deprecated use CacheListener.operateOnCache(Cacheable) instead
cacheResult(ASG, ASG, Cell, Map) - Method in class uk.ac.bbk.dcs.automed.qproc.functions.internal.CallToWrapper
 
cacheStart - Variable in class uk.ac.bbk.dcs.automed.qproc.functions.internal.CallToWrapper
 
cacheTimeSpent - Static variable in class uk.ac.bbk.dcs.automed.qproc.functions.internal.CallToWrapper
 
CacheTK - Class in uk.ac.ic.doc.automed.qproc.cache
CacheToolKit.java
CacheViewerFrame - Class in uk.ac.ic.doc.rodex.p2p.gui
 
CacheViewerFrame(String, Cacheable) - Constructor for class uk.ac.ic.doc.rodex.p2p.gui.CacheViewerFrame
Creates a new instance of CacheViewerFrame.
CacheViewerPanel - Class in uk.ac.ic.doc.rodex.p2p.gui
 
CacheViewerPanel(Map, DetachedTextEditor) - Constructor for class uk.ac.ic.doc.rodex.p2p.gui.CacheViewerPanel
Creates new form CacheViewerPanel
CacheViewers - Class in uk.ac.ic.doc.rodex.p2p.gui
CacheViewers.java
CacheViewers(CacheManager, String) - Constructor for class uk.ac.ic.doc.rodex.p2p.gui.CacheViewers
Creates a new instance of CacheViewers
cacheWrapper() - Method in class uk.ac.ic.doc.automed.wrappers.AutoMedWrapper
Cache this AutoMedWrapper as being able to provide the implementation of an AccessMethod used to create the wrapper.
calcRectangleConnector(Rectangle, Rectangle) - Static method in class uk.ac.ic.doc.automed.editor.EditorPanel
Compute three points, the first two of which represent a rectangle that forms a box `between' the supplied rectangles, and the third point represents the `sign' of the relationship between the rectangles.
calculateCellValueLength(Component, String) - Static method in class uk.ac.ic.doc.automed.editor.TextEditor
Get the estimated length of a text string painted on a component
Call2Wrapper - Class in uk.ac.ic.doc.automed.qproc.functions.internal
Call2Wrapper.java Extends CallToWrapper but does not perform caching of the result
Call2Wrapper() - Constructor for class uk.ac.ic.doc.automed.qproc.functions.internal.Call2Wrapper
Creates a new instance of Call2Wrapper
callConfirmMessagePane(String) - Method in class uk.ac.ic.doc.automed.editor.PatternWritingTool
 
callErrorMessagePane(String) - Method in class uk.ac.ic.doc.automed.editor.PatternWritingTool
 
calls - Static variable in class uk.ac.bbk.dcs.automed.qproc.functions.collections.Flatmap
 
CallToWrapper - Class in uk.ac.bbk.dcs.automed.qproc.functions.internal
 
CallToWrapper() - Constructor for class uk.ac.bbk.dcs.automed.qproc.functions.internal.CallToWrapper
 
CAP_DEFAULT - Static variable in class uk.ac.ic.doc.automed.reps.DataSource
 
CAPABILITY - Static variable in class uk.ac.ic.doc.automed.p2p.protocol.P2PConstants
 
cardString(Graphics2D, String, Point, Point) - Method in class uk.ac.ic.doc.automed.editor.drawables.DrawERRelationshipArc
Place a string neer the p1 end of a line between p1 and p2 such that it will not overlap the object p1 might connect to.
CASE - Static variable in interface uk.ac.bbk.dcs.automed.qproc.translators.xquery.XQuery2IQLConstants
 
caseCommand(String) - Static method in class uk.ac.ic.doc.automed.Util
converts the argument into lower case with the first letter in uppercase
castType(int, int) - Method in class uk.ac.ic.doc.automed.reps.TypeHierarchy
This method attempts to cast a type to one higher in the type hierarchy.
cdata - Static variable in class uk.ac.bbk.dcs.automed.xml.XMLConstants
 
CData - Static variable in class uk.ac.bbk.dcs.automed.xml.xmldssGraph.XMLDSSGraphText
 
Cell - Class in uk.ac.bbk.dcs.automed.qproc.iql
Every node in an ASG is a Cell, so one has to use this class in order to perform any operations on an ASG
Cell(int, Object, Object, Object) - Constructor for class uk.ac.bbk.dcs.automed.qproc.iql.Cell
 
Cell(int, Object, Object) - Constructor for class uk.ac.bbk.dcs.automed.qproc.iql.Cell
 
Cell(int, Object) - Constructor for class uk.ac.bbk.dcs.automed.qproc.iql.Cell
 
Cell(int, int) - Constructor for class uk.ac.bbk.dcs.automed.qproc.iql.Cell
 
Cell(int, double) - Constructor for class uk.ac.bbk.dcs.automed.qproc.iql.Cell
 
Cell(Object, Object) - Constructor for class uk.ac.bbk.dcs.automed.qproc.iql.Cell
 
Cell(String) - Constructor for class uk.ac.bbk.dcs.automed.qproc.iql.Cell
 
CFG_FILE_EXT - Static variable in class uk.ac.ic.doc.automed.p2p.AppToolKit
 
CFR - Class in uk.ac.bbk.dcs.automed.qproc.iql
Constructors and Functions Repository class.
CFR() - Constructor for class uk.ac.bbk.dcs.automed.qproc.iql.CFR
 
changePeerState(int) - Method in class uk.ac.ic.doc.automed.p2p.state.PeerStateHandler
It handle all state transitions in one method, throwing exceptions when
conflicts occur
.
changeSchemaUIDs(Schema, String) - Static method in class uk.ac.bbk.dcs.automed.xml.utilities.UIDUtility
 
CHANNEL_MULTICAST - Static variable in class uk.ac.ic.doc.automed.p2p.Constants
Send communication messages via multicast
CHANNEL_UNICAST - Static variable in class uk.ac.ic.doc.automed.p2p.Constants
Send communication messages via unicast
CHAR - Static variable in class uk.ac.ic.doc.automed.matching.SchemaElement
 
characters(char[], int, int) - Method in class uk.ac.bbk.dcs.automed.xml.wrappers.XMLDSSSAX
 
CHARACTERS - Static variable in interface uk.ac.ic.doc.automed.xml.XMLifyConstants
 
characters(char[], int, int) - Method in class uk.ac.ic.doc.automed.xml.XMLReader
 
checkCDATA(String) - Static method in class uk.ac.ic.doc.automed.xml.XMLSyntax
Thorws XMLSyntaxException if the string is null.
checkComparisonPredicates(QueryAnalyser, MiniConQueryRewriter.MiniConDescription) - Method in class uk.ac.ic.doc.rodex.qproc.MiniConQueryRewriter
keep a mapping b/w pairs of query-view whose predicates have been checked
checkConstants(QueryAnalyser, MiniConQueryRewriter.MiniConDescription) - Method in class uk.ac.ic.doc.rodex.qproc.MiniConQueryRewriter
Check if the current MCD support any constants in the query
checkDepenednts(Schema, String) - Static method in class uk.ac.bbk.dcs.automed.evolution.schemaModelEvolution.ExtensionalSchemaEvolution
 
checkEditable() - Method in class uk.ac.ic.doc.automed.reps.Schema
Checks whether a schema is editable.
CheckExistenceModule - Class in uk.ac.ic.doc.automed.matching.modules.bidirectionalmap
The module that compares the schema elements by examining if they have common instances
CheckExistenceModule(ArrayList, ArrayList) - Constructor for class uk.ac.ic.doc.automed.matching.modules.bidirectionalmap.CheckExistenceModule
Constructs a CheckExistenceModule to compare the specified schema elements in the input lists.
CheckExistenceModule(SchemaElement[], SchemaElement[]) - Constructor for class uk.ac.ic.doc.automed.matching.modules.bidirectionalmap.CheckExistenceModule
Constructs a CheckExistenceModule to compare the specified schema elements in the input arrays.
CheckExistenceModule(SchemaElementPair[]) - Constructor for class uk.ac.ic.doc.automed.matching.modules.bidirectionalmap.CheckExistenceModule
 
CheckExistenceModule - Class in uk.ac.ic.doc.automed.matching.modules.intervals
The module that compares the schema elements by examining if they have common instances
CheckExistenceModule(ArrayList, ArrayList) - Constructor for class uk.ac.ic.doc.automed.matching.modules.intervals.CheckExistenceModule
Constructs a CheckExistenceModule to compare the specified schema elements in the input lists.
CheckExistenceModule(SchemaElement[], SchemaElement[]) - Constructor for class uk.ac.ic.doc.automed.matching.modules.intervals.CheckExistenceModule
Constructs a CheckExistenceModule to compare the specified schema elements in the input arrays.
CheckExistenceModule(SchemaElementPair[]) - Constructor for class uk.ac.ic.doc.automed.matching.modules.intervals.CheckExistenceModule
 
CheckExistenceModule - Class in uk.ac.ic.doc.automed.matching.modules.probability.binary
The module that compares the schema elements by examining if they have common instances
CheckExistenceModule(ArrayList, ArrayList) - Constructor for class uk.ac.ic.doc.automed.matching.modules.probability.binary.CheckExistenceModule
Constructs a CheckExistenceModule to compare the specified schema elements in the input lists.
CheckExistenceModule(SchemaElement[], SchemaElement[]) - Constructor for class uk.ac.ic.doc.automed.matching.modules.probability.binary.CheckExistenceModule
Constructs a CheckExistenceModule to compare the specified schema elements in the input arrays.
CheckExistenceModule(SchemaElementPair[]) - Constructor for class uk.ac.ic.doc.automed.matching.modules.probability.binary.CheckExistenceModule
 
CheckExistenceModule - Class in uk.ac.ic.doc.automed.matching.modules.probability.senary
The module that compares the schema elements by examining if they have common instances
CheckExistenceModule(ArrayList, ArrayList) - Constructor for class uk.ac.ic.doc.automed.matching.modules.probability.senary.CheckExistenceModule
Constructs a CheckExistenceModule to compare the specified schema elements in the input lists.
CheckExistenceModule(SchemaElement[], SchemaElement[]) - Constructor for class uk.ac.ic.doc.automed.matching.modules.probability.senary.CheckExistenceModule
Constructs a CheckExistenceModule to compare the specified schema elements in the input arrays.
CheckExistenceModule(SchemaElementPair[]) - Constructor for class uk.ac.ic.doc.automed.matching.modules.probability.senary.CheckExistenceModule
 
checkModelsExist(String) - Method in class uk.ac.ic.doc.automed.p2p.SchemaGetter
For each model name in a name-delimited string, check if it exists in the local database.
checkQualityIndicator(QueryDescription) - Method in class uk.ac.ic.doc.rodex.p2p.protocol.QEP
Check if query execution can meet the expected quality indicator
checkSchemaName(StringBuffer) - Static method in class uk.ac.ic.doc.automed.reps.Schema
Check if a given schema name already been assigned.
checkUnionConstructs(Set) - Method in class uk.ac.bbk.dcs.automed.evolution.schemaModelEvolution.ExtensionalSchemaEvolution
 
checkXMLChar(char) - Static method in class uk.ac.ic.doc.automed.xml.XMLSyntax
Throws IlegleXMLCharacterExceptioin if c is not a valid XML character (i.e.
checkXMLName(String) - Static method in class uk.ac.ic.doc.automed.xml.XMLSyntax
Throws an XMLSyntaxException if name is not a valid XML element or attribute name.
children - Variable in class uk.ac.ic.doc.automed.p2p.tree.TreeNode
 
CHILDREN - Static variable in interface uk.ac.ic.doc.automed.xml.XMLifyConstants
 
chkOptimised - Variable in class uk.ac.ic.doc.automed.editor.IQLTool
 
Choose - Class in uk.ac.bbk.dcs.automed.qproc.functions
 
Choose() - Constructor for class uk.ac.bbk.dcs.automed.qproc.functions.Choose
 
chooseBackgroundColor(Gui, Object[]) - Static method in class uk.ac.ic.doc.automed.editor.Gui
 
chooseForegroundColor(Gui, Object[]) - Static method in class uk.ac.ic.doc.automed.editor.Gui
 
ChooseMainNode(SchemaObject[]) - Method in class uk.ac.ic.doc.automed.editor.layout.AestheticRootLayout
 
ChooseMainNode(SchemaObject[]) - Method in class uk.ac.ic.doc.automed.editor.layout.LogicalRootLayout
 
ChooseMainNode(SchemaObject[]) - Method in class uk.ac.ic.doc.automed.editor.layout.RootLayout
 
ChooseOptimiser - Class in uk.ac.bbk.dcs.automed.qproc.optimise.optimisers
This Class optimises expressions involving the "choose" built-in function.
ChooseOptimiser() - Constructor for class uk.ac.bbk.dcs.automed.qproc.optimise.optimisers.ChooseOptimiser
The three simplification rules.
chooseTextColor(Gui, Object[]) - Static method in class uk.ac.ic.doc.automed.editor.Gui
 
cidExists(int) - Static method in class uk.ac.ic.doc.automed.MDR
Checks if a particular construct identifier (CID) exists in the MDR.
Class - Static variable in class uk.ac.bbk.dcs.automed.rdfs.RDFSConstants
 
CLASS - Static variable in class uk.ac.ic.doc.automed.p2p.tree.TreeNode
 
CLASS_ALTERNATION - Static variable in class uk.ac.ic.doc.automed.reps.Construct
Class of construct which acts as a place holder for one of list of alternative constructs.
CLASS_CONSTRAINT - Static variable in class uk.ac.ic.doc.automed.reps.Construct
Class of construct for constraints, i.e.
CLASS_LINK - Static variable in class uk.ac.ic.doc.automed.reps.Construct
Class of construct for linking constructs, i.e.
CLASS_LINK_NODAL - Static variable in class uk.ac.ic.doc.automed.reps.Construct
Class of construct for link-nodal constructs, i.e.
CLASS_MAXIMUM - Static variable in class uk.ac.ic.doc.automed.reps.Construct
 
CLASS_MINIMUM - Static variable in class uk.ac.ic.doc.automed.reps.Construct
 
CLASS_NODAL - Static variable in class uk.ac.ic.doc.automed.reps.Construct
Class of construct for nodal constructs, i.e.
CLASS_SEQUENCE - Static variable in class uk.ac.ic.doc.automed.reps.Construct
Class of construct which acts as a place holder for a list of constructs.
classes - Variable in class uk.ac.ic.doc.automed.p2p.tree.MainObjectClasses
 
Classifier - Interface in uk.ac.ic.doc.automed.matching.modules.bidirectionalmap
 
classify(ElementVectorRepresentation) - Method in class uk.ac.ic.doc.automed.matching.modules.bidirectionalmap.AbsoluteEuclideanClassifier
 
classify(ElementVectorRepresentation) - Method in interface uk.ac.ic.doc.automed.matching.modules.bidirectionalmap.Classifier
 
classify(ElementVectorRepresentation) - Method in class uk.ac.ic.doc.automed.matching.modules.bidirectionalmap.RelativeEuclideanClassifier
 
CLAUSE_CLASS - Static variable in class uk.ac.ic.doc.automed.wrappers.AutoMedQuery
 
clear() - Method in class uk.ac.ic.doc.automed.editor.PatternWritingTool.DynamicTree
Remove all nodes except the root node.
clear() - Method in class uk.ac.ic.doc.automed.p2p.AutoMedMessagingHelper
 
clear() - Method in class uk.ac.ic.doc.automed.qproc.cache.DefaultQueryCache
Clear the cache
clear() - Method in interface uk.ac.ic.doc.automed.util.cache.Cacheable
Clear the cache
clear() - Method in class uk.ac.ic.doc.automed.util.cache.CacheContentDescription
Clear the cache content
clearAccessMethods() - Static method in class uk.ac.ic.doc.automed.reps.AccessMethod
 
clearCache() - Method in class uk.ac.ic.doc.rodex.p2p.gui.CacheViewerFrame
Clear the active cache
clearFeatures() - Method in class uk.ac.ic.doc.automed.wrappers.AutoMedWrapperFactory
Clear all the features for this factory.
clearSchemas() - Static method in class uk.ac.ic.doc.automed.reps.Schema
This method empties all the cached Schema, SchemaObject, Transformation, AccessMethods and Protocols that have been cached.
CLIENT_DEDICATED - Static variable in class uk.ac.ic.doc.automed.p2p.Constants
Dedicated network client
CLIENT_SOCK_TIME_OUT - Static variable in class uk.ac.ic.doc.automed.p2p.Constants
default client time out (in milli-secs), this is especially useful in UDP communication where there is no way of knowing the status of the response (connectionless)
CLIENT_SWITCHED - Static variable in class uk.ac.ic.doc.automed.p2p.Constants
Switched network client
ClientFactory - Class in uk.ac.ic.doc.automed.p2p.communication
 
ClientFactory() - Constructor for class uk.ac.ic.doc.automed.p2p.communication.ClientFactory
 
clone() - Method in class uk.ac.ic.doc.automed.matching.SchemaElementPairRelationship
Creates a clone of the SchemaElementPairRelationship object.
close() - Method in class uk.ac.ic.doc.automed.editor.Gui
 
close() - Method in class uk.ac.ic.doc.automed.p2p.AutoMedPeer
Close down the peer and its message handler, allowing another instance of this class to be created.
close() - Method in class uk.ac.ic.doc.automed.p2p.directory.P2PDirectory
 
close() - Method in class uk.ac.ic.doc.automed.p2p.gui.PeerApplication
Close the AutoMedPeer, and allow to register as a new peer
close() - Method in class uk.ac.ic.doc.automed.p2p.P2PRegistry
 
close() - Method in class uk.ac.ic.doc.automed.util.db.QueryCacheSQLAdapter
Close the database
close() - Method in class uk.ac.ic.doc.automed.util.persist.PersistentDB
Close the database
close() - Method in class uk.ac.ic.doc.automed.util.persist.PersistentDBController
Close the environment
close() - Method in interface uk.ac.ic.doc.automed.util.persist.PersistentHandler
Close the database
close() - Method in class uk.ac.ic.doc.automed.xml.XMLReader
call this if you intend to stop reading tokens and haven't read an END_DOCUMENT or SAX_ERROR token this will not return until the parser thread completes or it times out at which point it throws an XMLReaderException.
close(int) - Method in class uk.ac.ic.doc.automed.xml.XMLReader
 
close() - Method in class uk.ac.ic.doc.rodex.p2p.gui.GuiApplication
 
close() - Method in class uk.ac.ic.doc.rodex.p2p.gui.LoginGui
 
closeConnection() - Method in class uk.ac.ic.doc.automed.util.db.DBAccess
 
closeScheme - Static variable in class uk.ac.ic.doc.automed.reps.Syntax.Token
 
closeTag() - Method in class uk.ac.ic.doc.automed.xml.XMLWriter
 
CLS_CACHE - Static variable in class uk.ac.ic.doc.automed.util.ModuleConnector
 
Cluster - Class in uk.ac.ic.doc.automed.matching.modules.bidirectionalmap
 
Cluster() - Constructor for class uk.ac.ic.doc.automed.matching.modules.bidirectionalmap.Cluster
 
Clusterer - Class in uk.ac.ic.doc.automed.matching.modules.bidirectionalmap
 
Clusterer() - Constructor for class uk.ac.ic.doc.automed.matching.modules.bidirectionalmap.Clusterer
 
ClustererClassifier - Class in uk.ac.ic.doc.automed.matching.modules.bidirectionalmap
 
ClustererClassifier() - Constructor for class uk.ac.ic.doc.automed.matching.modules.bidirectionalmap.ClustererClassifier
 
clusters - Variable in class uk.ac.ic.doc.automed.matching.modules.bidirectionalmap.Clusterer
 
collapseWhiteSpace(Node) - Static method in class uk.ac.bbk.dcs.automed.xml.utilities.XMLUtilities
 
COLLECTION - Static variable in class uk.ac.ic.doc.automed.p2p.tree.TreeNode
 
COLLECTION_BAG_CONS - Variable in class uk.ac.bbk.dcs.automed.qproc.iql.ASGCollection
 
COLLECTION_BAG_NIL - Variable in class uk.ac.bbk.dcs.automed.qproc.iql.ASGCollection
 
COLLECTION_LIST_CONS - Variable in class uk.ac.bbk.dcs.automed.qproc.iql.ASGCollection
 
COLLECTION_LIST_NIL - Variable in class uk.ac.bbk.dcs.automed.qproc.iql.ASGCollection
 
COLLECTION_SET - Static variable in class uk.ac.ic.doc.automed.p2p.tree.TreeNode
 
COLLECTION_SET_CONS - Variable in class uk.ac.bbk.dcs.automed.qproc.iql.ASGCollection
 
COLLECTION_SET_NIL - Variable in class uk.ac.bbk.dcs.automed.qproc.iql.ASGCollection
 
CollectionOperatorReorganiser - Class in uk.ac.bbk.dcs.automed.qproc.optimise.optimisers
This optimiser is to reorganise the order of arguments in expressions containing ++, --, intersect & union operators, so that constructs from the same schema come closer in the query tree and therefore bigger sub queries can be sent to the a datasource wrapper.
CollectionOperatorReorganiser() - Constructor for class uk.ac.bbk.dcs.automed.qproc.optimise.optimisers.CollectionOperatorReorganiser
Considering the fellowing cases: $x ++ ($y ++ $z) // Two++A ($x ++ $y) ++ $z // Two++B ($x ++ $y) ++ ($z ++ $m) // Three++ $x -- ($y -- $z) // unchangable ($x -- $y) -- $z // Two-- ($x -- $y) -- ($z -- $m) // Three-- $x ++ ($y -- $z) // unchangable ($x -- $y) ++ $z // unchangable ($x -- $y) ++ ($z -- $m) // unchangable $x -- ($y ++ $z) // One--One++ ($x ++ $y) -- $z // unchangable ($x ++ $y) -- ($z ++ $m) // One++One--One++ ($x ++ $y) ++ ($z -- $m) // Two++One-- ($x -- $y) ++ ($z ++ $m) // One--Two++ ($x ++ $y) -- ($z -- $m) // unchangable ($x -- $y) -- ($z ++ $m) // Two--One++ $x union ($y union $z) // TwoUnionA ($x union $y) union $z // TwoUnionB ($x union $y) union ($z union $m) //ThreeUnion $x intersect ($y intersect $z) //TwoIntersectA ($x intersect $y) intersect $z //TwoIntersectB ($x intersect $y) intersect ($z intersect $m) //ThreeIntersect
collectionQuery - Variable in class uk.ac.bbk.dcs.automed.wrappers.IQLTranslator
 
CollectionSet - Class in uk.ac.ic.doc.automed.p2p.tree
 
CollectionSet() - Constructor for class uk.ac.ic.doc.automed.p2p.tree.CollectionSet
 
collectionXMLDSS - Static variable in class uk.ac.bbk.dcs.automed.xml.XMLConstants
 
Colon - Static variable in class uk.ac.bbk.dcs.automed.qproc.iql.FSym
 
Colon - Static variable in class uk.ac.bbk.dcs.automed.qproc.iql.QSym
 
COLON - Static variable in interface uk.ac.bbk.dcs.automed.qproc.translators.xquery.XQuery2IQLConstants
 
colon - Static variable in class uk.ac.ic.doc.automed.reps.Syntax.Token
 
column - Variable in class uk.ac.bbk.dcs.automed.qproc.annotate.grammars.schemes.SimpleCharStream
 
column - Variable in class uk.ac.bbk.dcs.automed.qproc.annotate.grammars.simpleComp.SimpleCharStream
 
column - Variable in class uk.ac.bbk.dcs.automed.qproc.annotate.grammars.simpleCompAppend.SimpleCharStream
 
column - Variable in class uk.ac.bbk.dcs.automed.qproc.annotate.grammars.simpleCompAppendMonus.SimpleCharStream
 
column - Variable in class uk.ac.bbk.dcs.automed.qproc.translators.xquery.SimpleCharStream
 
COLUMN_POSITION - Static variable in class uk.ac.ic.doc.automed.wrappers.SQLWrapperFactory
A feature option to model the position of a column in a table as part of a column in any Schema the factory generates
columns - Variable in class uk.ac.ic.doc.automed.matching.SQLRelationshipExtractor
 
combineRelationships(SemanticRelationship, SemanticRelationship) - Static method in class uk.ac.ic.doc.automed.matching.RelationshipExtractor
Returns the relationship that can be deduced from the specified relationships.
COMMA - Static variable in interface uk.ac.bbk.dcs.automed.qproc.annotate.grammars.schemes.SchemesConstants
 
COMMA - Static variable in interface uk.ac.bbk.dcs.automed.qproc.annotate.grammars.simpleComp.SimpleCompConstants
 
COMMA - Static variable in interface uk.ac.bbk.dcs.automed.qproc.annotate.grammars.simpleCompAppend.SimpleCompAppendConstants
 
COMMA - Static variable in interface uk.ac.bbk.dcs.automed.qproc.annotate.grammars.simpleCompAppendMonus.SimpleCompAppendMonusConstants
 
Comma - Static variable in class uk.ac.bbk.dcs.automed.qproc.iql.FSym
 
Comma - Static variable in class uk.ac.bbk.dcs.automed.qproc.iql.QSym
 
COMMA - Static variable in interface uk.ac.bbk.dcs.automed.qproc.translators.xquery.XQuery2IQLConstants
 
comma - Static variable in class uk.ac.ic.doc.automed.reps.Syntax.Token
 
CommandLineDriver - Class in uk.ac.ic.doc.automed.editor
 
CommandLineDriver() - Constructor for class uk.ac.ic.doc.automed.editor.CommandLineDriver
 
CommandLineException - Exception in uk.ac.ic.doc.automed.editor
 
CommandLineException(String) - Constructor for exception uk.ac.ic.doc.automed.editor.CommandLineException
 
COMMENT - Static variable in class uk.ac.ic.doc.automed.p2p.protocol.P2PConstants
Comment string in configuration files
commit() - Method in class uk.ac.ic.doc.automed.util.db.DBAccess
Only use this method if you want to commit changes immediately.
commit() - Method in class uk.ac.ic.doc.automed.util.db.DBEmbedded
Only use this method if you want to commit changes immediately.
In HSQLDB this can be avoided by using "SET _writeDelay 0 MILLIS" in dbname.script
file.
commit() - Method in class uk.ac.ic.doc.automed.util.db.DBPostgres
Only use this method if you want to commit changes immediately.
In HSQLDB this can be avoided by using "SET _writeDelay 0 MILLIS" in dbname.script
file.
CommunicationException - Exception in uk.ac.ic.doc.automed.p2p.communication
 
CommunicationException() - Constructor for exception uk.ac.ic.doc.automed.p2p.communication.CommunicationException
 
CommunicationException(String) - Constructor for exception uk.ac.ic.doc.automed.p2p.communication.CommunicationException
 
CommunicationException(Throwable) - Constructor for exception uk.ac.ic.doc.automed.p2p.communication.CommunicationException
 
CommunicationException(String, Throwable) - Constructor for exception uk.ac.ic.doc.automed.p2p.communication.CommunicationException
 
COMP - Static variable in interface uk.ac.bbk.dcs.automed.qproc.annotate.grammars.simpleComp.SimpleCompConstants
 
COMP - Static variable in interface uk.ac.bbk.dcs.automed.qproc.annotate.grammars.simpleCompAppend.SimpleCompAppendConstants
 
COMP - Static variable in interface uk.ac.bbk.dcs.automed.qproc.annotate.grammars.simpleCompAppendMonus.SimpleCompAppendMonusConstants
 
ComparableExact - Interface in uk.ac.ic.doc.automed.matching.modules.bidirectionalmap
 
compare(Set, Cell) - Static method in class uk.ac.bbk.dcs.automed.evolution.schemaModelEvolution.ExtensionalSchemaEvolution
 
compare(String, Cell) - Static method in class uk.ac.bbk.dcs.automed.evolution.schemaModelEvolution.ExtensionalSchemaEvolution
 
compare(Object, Object) - Method in class uk.ac.ic.doc.automed.matching.Instance
 
compare(Range) - Method in class uk.ac.ic.doc.automed.matching.Range
 
compare(Object, Object) - Method in class uk.ac.ic.doc.automed.reps.Construct
Ordering of Constructs is determined by their Construct.getCID() value.
compare(Object, Object) - Method in class uk.ac.ic.doc.automed.reps.SchemaObject
 
compareExpressions(AutoMedType, AutoMedType) - Static method in class uk.ac.ic.doc.rodex.qproc.QueryFunction
Compare two AutoMedType expressions
compareNodes(Cell, Cell) - Static method in class uk.ac.bbk.dcs.automed.qproc.functions.comparison.Comparisons
 
compareNumericExpressions(double, double) - Static method in class uk.ac.ic.doc.rodex.qproc.QueryFunction
 
compareRange(ComparableExact, ComparableExact, ComparableExact, ComparableExact) - Static method in class uk.ac.ic.doc.automed.matching.modules.bidirectionalmap.PrecisionModule
 
compareStringExpressions(String, String) - Static method in class uk.ac.ic.doc.rodex.qproc.QueryFunction
 
compareTo(BidirectionalDegree) - Method in class uk.ac.ic.doc.automed.matching.BidirectionalDegree
 
compareTo(Object) - Method in interface uk.ac.ic.doc.automed.matching.modules.bidirectionalmap.ComparableExact
 
compareTo(Object) - Method in class uk.ac.ic.doc.automed.matching.SimilarSchemaElementPair
 
compareTo(Object) - Method in class uk.ac.ic.doc.automed.reps.SchemaObject
 
compareTo(Object) - Method in class uk.ac.ic.doc.automed.reps.Transformation
 
comparison() - Method in class uk.ac.bbk.dcs.automed.qproc.translators.xquery.XQuery2IQL
 
Comparisons - Class in uk.ac.bbk.dcs.automed.qproc.functions.comparison
 
Comparisons() - Constructor for class uk.ac.bbk.dcs.automed.qproc.functions.comparison.Comparisons
 
COMPARISONTOKEN - Static variable in interface uk.ac.bbk.dcs.automed.qproc.annotate.grammars.simpleComp.SimpleCompConstants
 
COMPARISONTOKEN - Static variable in interface uk.ac.bbk.dcs.automed.qproc.annotate.grammars.simpleCompAppend.SimpleCompAppendConstants
 
COMPARISONTOKEN - Static variable in interface uk.ac.bbk.dcs.automed.qproc.annotate.grammars.simpleCompAppendMonus.SimpleCompAppendMonusConstants
 
Compatibility - Class in uk.ac.ic.doc.automed.matching.relationships
The Compatibility class represent a compatible semantic relationship between SchemaElement objects.
CompGenReorganiser - Class in uk.ac.bbk.dcs.automed.qproc.optimise.optimisers
This optimiser is used to reorganise the generators in comprehensions.
CompGenReorganiser() - Constructor for class uk.ac.bbk.dcs.automed.qproc.optimise.optimisers.CompGenReorganiser
 
completeTree() - Method in class uk.ac.ic.doc.automed.p2p.tree.CollectionSet
 
completeTree() - Method in class uk.ac.ic.doc.automed.p2p.tree.Root
completes the tree by adding the AutoMedObject nodes that correspond to the references of the tree.
ComplexType - Class in uk.ac.ic.doc.automed.wrappers.xsdomobject
Define the internal representation for an XMLSchema complexType
ComplexType(String) - Constructor for class uk.ac.ic.doc.automed.wrappers.xsdomobject.ComplexType
Creates a new instance of ComplexType
compOp() - Method in class uk.ac.bbk.dcs.automed.qproc.translators.xquery.XQuery2IQL
 
composeView(Map[], ViewKey) - Method in class uk.ac.bbk.dcs.automed.qproc.reformulate.CompositeViewMap
 
compositeQuery(ASG) - Method in class uk.ac.bbk.dcs.automed.xml.wrappers.DOMWrapper
 
compositeQuery(ASG) - Method in class uk.ac.bbk.dcs.automed.xml.wrappers.NXDBWrapper
 
compositeQuery(ASG) - Method in class uk.ac.bbk.dcs.automed.xml.wrappers.SAXWrapper
 
compositeQuery(ASG) - Method in class uk.ac.bbk.dcs.automed.xml.wrappers.XMLWrapper
 
CompositeViewMap - Class in uk.ac.bbk.dcs.automed.qproc.reformulate
Class containing common functionality for creating composite views from atomic views.
CompositeViewMap(Schema, Schema, QueryProcessorConfiguration) - Constructor for class uk.ac.bbk.dcs.automed.qproc.reformulate.CompositeViewMap
Constructs a new CompositeViewMap object for the input source and target schemas, then populates it.
Comprehension - Class in uk.ac.bbk.dcs.automed.qproc.functions.internal
 
Comprehension() - Constructor for class uk.ac.bbk.dcs.automed.qproc.functions.internal.Comprehension
 
ComprehensionDistributor - Class in uk.ac.bbk.dcs.automed.qproc.optimise.optimisers
This optimiser is used to decompose a comprehension whose generators contain append expressions, such as [x|x<-(E1++E2)].
ComprehensionDistributor(boolean) - Constructor for class uk.ac.bbk.dcs.automed.qproc.optimise.optimisers.ComprehensionDistributor
 
ComprehensionSimplification - Class in uk.ac.bbk.dcs.automed.qproc.optimise.optimisers
This Class optimises expressions involving the "choose" built-in function.
ComprehensionSimplification(boolean) - Constructor for class uk.ac.bbk.dcs.automed.qproc.optimise.optimisers.ComprehensionSimplification
The three simplification rules.
compSubCompMap - Variable in class uk.ac.bbk.dcs.automed.wrappers.IQLTranslator
Contains mapping between the vars in a generator pattern and the vars in the head of a subcomp.
computeAbsolutePosition(AutoLayoutTreeObject, int, int) - Static method in class uk.ac.ic.doc.automed.editor.autolayout.AutoLayoutTreeObject
 
computeName(Schema, Schema, QueryProcessorConfiguration, int) - Static method in class uk.ac.bbk.dcs.automed.qproc.reformulate.AtomicViewMap
 
computeName(Schema, Schema, QueryProcessorConfiguration) - Static method in class uk.ac.bbk.dcs.automed.qproc.reformulate.CompositeViewMap
 
con - Variable in class uk.ac.ic.doc.automed.wrappers.SQLWrapper
 
Concat - Class in uk.ac.bbk.dcs.automed.qproc.functions.string
Concatenates a list of strings in a single string.
Concat() - Constructor for class uk.ac.bbk.dcs.automed.qproc.functions.string.Concat
 
config - Variable in class uk.ac.ic.doc.automed.p2p.AutoMedPeer
 
ConfigException - Exception in uk.ac.ic.doc.automed.editor
 
ConfigException(String) - Constructor for exception uk.ac.ic.doc.automed.editor.ConfigException
 
ConfigException(String, int, String) - Constructor for exception uk.ac.ic.doc.automed.editor.ConfigException
 
configureLogging() - Static method in class uk.ac.ic.doc.automed.p2p.overlay.OverlayToolKit
Configure the overlay logging targets.
confirm(Component, Object) - Static method in class uk.ac.ic.doc.automed.p2p.gui.P2PGui
 
confirm(Object) - Static method in class uk.ac.ic.doc.automed.p2p.gui.P2PGui
 
CONFIRM - Static variable in class uk.ac.ic.doc.automed.p2p.protocol.P2PConstants
performative
confirmOptimise(TML, TML, String) - Method in class uk.ac.ic.doc.automed.editor.PathwayOptimiserTool
 
connect() - Method in class uk.ac.bbk.dcs.automed.hdmstore.HdmStore
If connecting to the HDM store without a schema being passed assume same data source as for the MDR
connect(String) - Method in class uk.ac.bbk.dcs.automed.hdmstore.HdmStore
Connect to the database using the access method for the named schema.
connect(String, String) - Method in class uk.ac.bbk.dcs.automed.hdmstore.HdmStore
Connect to the database using the access method for the named schema using the access method in the repository for the schema and the password supplied.
connect() - Method in class uk.ac.bbk.dcs.automed.hdmstore.HdmWrapper
 
connect() - Method in class uk.ac.bbk.dcs.automed.xml.wrappers.EXISTWrapper
 
connect() - Method in class uk.ac.bbk.dcs.automed.xml.wrappers.XMLWrapper
 
connect() - Method in class uk.ac.ic.doc.automed.wrappers.AutoMedWrapper
Use the connection details held with this wrapper to connect to the data source.
connect() - Method in class uk.ac.ic.doc.automed.wrappers.CSVWrapper
Check that the CSV file exists
connect() - Method in class uk.ac.ic.doc.automed.wrappers.HDMWrapper
 
connect() - Method in class uk.ac.ic.doc.automed.wrappers.P2PWrapper
In a P2P network, communication is not guarenteed, and hence this method returning with an Exception does not ensure that all peers are contactable.
connect() - Method in class uk.ac.ic.doc.automed.wrappers.QueryCacheWrapper
Empty method to comply with AutoMedWrapper
connect() - Method in class uk.ac.ic.doc.automed.wrappers.SQLWrapper
Connect to a JDBC database in the standard way.
connect() - Method in class uk.ac.ic.doc.automed.wrappers.UMLWrapper
Check that the UML file exists
connect() - Method in class uk.ac.ic.doc.automed.wrappers.XMLSchemaWrapper
Check that the XML file exists
connect() - Method in class uk.ac.ic.doc.automed.wrappers.YattaWrapper
Connect to a semistructured textfile --- i.e.
connections - Variable in class uk.ac.ic.doc.automed.util.db.DBAccess
 
connectToDB() - Method in class uk.ac.ic.doc.automed.reps.RelationalOutputter
Connect to the local database
consName() - Method in class uk.ac.bbk.dcs.automed.qproc.annotate.grammars.schemes.Schemes
 
consName() - Method in class uk.ac.bbk.dcs.automed.qproc.annotate.grammars.simpleComp.SimpleComp
 
consName() - Method in class uk.ac.bbk.dcs.automed.qproc.annotate.grammars.simpleCompAppend.SimpleCompAppend
 
consName() - Method in class uk.ac.bbk.dcs.automed.qproc.annotate.grammars.simpleCompAppendMonus.SimpleCompAppendMonus
 
CONSOLE - Static variable in class uk.ac.ic.doc.automed.util.LogOutputHandler
Print log messages to std output only
constant() - Method in class uk.ac.bbk.dcs.automed.qproc.annotate.grammars.simpleComp.SimpleComp
 
constant() - Method in class uk.ac.bbk.dcs.automed.qproc.annotate.grammars.simpleCompAppend.SimpleCompAppend
 
constant() - Method in class uk.ac.bbk.dcs.automed.qproc.annotate.grammars.simpleCompAppendMonus.SimpleCompAppendMonus
 
CONSTANT - Static variable in interface uk.ac.bbk.dcs.automed.qproc.translators.xquery.XQuery2IQLConstants
 
CONSTANT - Static variable in class uk.ac.ic.doc.automed.wrappers.AutoMedQuery
 
CONSTANT_TOKEN - Static variable in class uk.ac.ic.doc.automed.wrappers.AutoMedQuery
 
Constants - Interface in uk.ac.ic.doc.automed
Deprecated. use constants in individual classes instead, such as Construct .CLASS_MINIMUM instead of CONSTRUCT_CLASS_MINIMUM
Constants - Class in uk.ac.ic.doc.automed.p2p
 
Constants() - Constructor for class uk.ac.ic.doc.automed.p2p.Constants
 
Constants - Class in uk.ac.ic.doc.automed.util.db
Constants.java
Constants() - Constructor for class uk.ac.ic.doc.automed.util.db.Constants
 
Constants - Class in uk.ac.ic.doc.automed.wrappers
Constants.java
Constants() - Constructor for class uk.ac.ic.doc.automed.wrappers.Constants
 
ConstantSimplification - Class in uk.ac.bbk.dcs.automed.qproc.optimise.optimisers
This optimiser eliminates Constructors Null, Any, Void, Nil, SNil and BNil where possible.
ConstantSimplification() - Constructor for class uk.ac.bbk.dcs.automed.qproc.optimise.optimisers.ConstantSimplification
 
CONSTOKEN - Static variable in interface uk.ac.bbk.dcs.automed.qproc.annotate.grammars.schemes.SchemesConstants
 
CONSTOKEN - Static variable in interface uk.ac.bbk.dcs.automed.qproc.annotate.grammars.simpleComp.SimpleCompConstants
 
CONSTOKEN - Static variable in interface uk.ac.bbk.dcs.automed.qproc.annotate.grammars.simpleCompAppend.SimpleCompAppendConstants
 
CONSTOKEN - Static variable in interface uk.ac.bbk.dcs.automed.qproc.annotate.grammars.simpleCompAppendMonus.SimpleCompAppendMonusConstants
 
ConsToken - Static variable in class uk.ac.bbk.dcs.automed.qproc.iql.QSym
 
constrain(Component, int, int, int, int, int, int, double, double, int, int, int, int) - Method in class uk.ac.ic.doc.automed.editor.GUITool
 
constrain(Component, int, int, int, int, int, int, double, double) - Method in class uk.ac.ic.doc.automed.editor.GUITool
 
constrain(Component, int, int, int, int) - Method in class uk.ac.ic.doc.automed.editor.GUITool
 
constraint - Static variable in class uk.ac.ic.doc.automed.reps.Syntax.Token
 
CONSTRAINT_EXCLUSION - Static variable in class uk.ac.ic.doc.automed.reps.Construct
 
CONSTRAINT_INCLUSION - Static variable in class uk.ac.ic.doc.automed.reps.Construct
 
CONSTRAINT_MANDATORY - Static variable in class uk.ac.ic.doc.automed.reps.Construct
 
CONSTRAINT_REFLEXIVE - Static variable in class uk.ac.ic.doc.automed.reps.Construct
 
CONSTRAINT_UNDEFINED - Static variable in class uk.ac.ic.doc.automed.reps.Construct
 
CONSTRAINT_UNION - Static variable in class uk.ac.ic.doc.automed.reps.Construct
 
CONSTRAINT_UNIQUE - Static variable in class uk.ac.ic.doc.automed.reps.Construct
 
CONSTRAINTS - Static variable in class uk.ac.ic.doc.automed.p2p.protocol.P2PConstants
 
Construct - Class in uk.ac.ic.doc.automed.reps
Edited by mdle on 20/10/2005 to implement the PersistentObject interface
Construct(Model, int, String, int, boolean) - Constructor for class uk.ac.ic.doc.automed.reps.Construct
Instantiates a Construct, which is assumed to already exist in the STR.
construct - Static variable in class uk.ac.ic.doc.automed.reps.Syntax.Token
 
CONSTRUCT_ADDED - Static variable in class uk.ac.ic.doc.automed.reps.ModelChangeEvent
 
CONSTRUCT_CHANGED - Static variable in class uk.ac.ic.doc.automed.reps.ModelChangeEvent
 
CONSTRUCT_CLASS_CONSTRAINT - Static variable in interface uk.ac.ic.doc.automed.Constants
Deprecated. Class of construct for constraints
CONSTRUCT_CLASS_LINK - Static variable in interface uk.ac.ic.doc.automed.Constants
Deprecated. Class of construct for linking constructs
CONSTRUCT_CLASS_LINK_NODAL - Static variable in interface uk.ac.ic.doc.automed.Constants
Deprecated. Class of construct for link-nodal constructs
CONSTRUCT_CLASS_MAXIMUM - Static variable in interface uk.ac.ic.doc.automed.Constants
Deprecated.  
CONSTRUCT_CLASS_MINIMUM - Static variable in interface uk.ac.ic.doc.automed.Constants
Deprecated.  
CONSTRUCT_CLASS_NODAL - Static variable in interface uk.ac.ic.doc.automed.Constants
Deprecated. Class of construct for nodal constructs
CONSTRUCT_REMOVED - Static variable in class uk.ac.ic.doc.automed.reps.ModelChangeEvent
 
CONSTRUCT_TYPE_ANY - Static variable in class uk.ac.ic.doc.automed.reps.Construct
 
CONSTRUCT_TYPE_ARRAY - Static variable in class uk.ac.ic.doc.automed.reps.Construct
 
CONSTRUCT_TYPE_REFERENCE - Static variable in class uk.ac.ic.doc.automed.reps.Construct
 
constructAdded(ModelChangeEvent) - Method in interface uk.ac.ic.doc.automed.reps.ModelChangeListener
 
ConstructAny - Static variable in class uk.ac.ic.doc.automed.reps.Construct
 
ConstructArray - Static variable in class uk.ac.ic.doc.automed.reps.Construct
 
constructChanged(ModelChangeEvent) - Method in interface uk.ac.ic.doc.automed.reps.ModelChangeListener
 
ConstructConstraint - Class in uk.ac.ic.doc.automed.reps
 
ConstructConstraint(String, int, String, String) - Constructor for class uk.ac.ic.doc.automed.reps.ConstructConstraint
Creates a new instance of ConstructConstraint
ConstructConstraint(int, String, String) - Constructor for class uk.ac.ic.doc.automed.reps.ConstructConstraint
Creates a new instance of ConstructConstraint with a random id
constructor - Static variable in class uk.ac.bbk.dcs.automed.qproc.iql.Cell
 
ConstructReference - Static variable in class uk.ac.ic.doc.automed.reps.Construct
 
constructRemoved(ModelChangeEvent) - Method in interface uk.ac.ic.doc.automed.reps.ModelChangeListener
 
ConstructScheme - Class in uk.ac.ic.doc.automed.reps
Edited by mdle on 20/10/2005 to implement the PersistentObject interface
ConstructScheme(int, int, int, Construct, boolean, int, int, int) - Constructor for class uk.ac.ic.doc.automed.reps.ConstructScheme
Instantiates a new ConstructScheme object.
ConstructSchemeSyntaxException - Exception in uk.ac.ic.doc.automed.reps
 
ConstructSchemeSyntaxException(String) - Constructor for exception uk.ac.ic.doc.automed.reps.ConstructSchemeSyntaxException
 
ConstToken - Static variable in class uk.ac.bbk.dcs.automed.qproc.iql.FSym
 
contain(AutoLayoutSchemaObject) - Method in class uk.ac.ic.doc.automed.editor.autolayout.AutoLayout
 
contains(SchemaElementPair[], SchemaElement[], int) - Static method in class uk.ac.ic.doc.automed.matching.Integrator
Returns true if the specified elements are contained in the specified pairs.
contains(SchemaElementPair[], SchemaElementPair[]) - Static method in class uk.ac.ic.doc.automed.matching.Integrator
Returns true if the pairs are contained in the specified array.
contains(String) - Method in class uk.ac.ic.doc.automed.reps.Network
Returns whether or not the network contains the named schema
contains(Schema) - Method in class uk.ac.ic.doc.automed.reps.Network
Returns whether or not the network contains the supplied schema
contains(Node) - Method in class uk.ac.ic.doc.automed.reps.Network
Returns whether or not the network contains the supplied node.
contains(SchemaObject) - Method in class uk.ac.ic.doc.automed.reps.Schema
Determine if a SchemaObject exists in this Schema
contains(String) - Method in class uk.ac.ic.doc.automed.reps.Schema
Determine if the SchemaObject that has the supplied name exists in this Schema
contains(List, List) - Method in class uk.ac.ic.doc.rodex.qproc.MiniConQueryRewriter
Check if a set of query sub-goals contains another set of sub-goals
containsGraphNode(DirectedGraphNode) - Method in class uk.ac.bbk.dcs.automed.graph.DirectedGraph
 
containsInstance(AbstractStringDistance, String, String[]) - Method in class uk.ac.ic.doc.automed.matching.modules.intervals.JaccardExistenceModule
 
containsInstance(AbstractStringDistance, String, String[]) - Method in class uk.ac.ic.doc.automed.matching.modules.intervals.JaroExistenceModule
 
containsInstance(AbstractStringDistance, String, String[]) - Method in class uk.ac.ic.doc.automed.matching.modules.probability.binary.AttributeJaccardExistenceModule
 
containsInstance(AbstractStringDistance, String, String[]) - Method in class uk.ac.ic.doc.automed.matching.modules.probability.binary.JaccardAtomicExistenceModule
 
containsInstance(AbstractStringDistance, String, String[]) - Method in class uk.ac.ic.doc.automed.matching.modules.probability.binary.JaccardExistenceModule
 
containsInstance(AbstractStringDistance, String, String[]) - Method in class uk.ac.ic.doc.automed.matching.modules.probability.binary.JaroAtomicExistenceModule
 
containsInstance(AbstractStringDistance, String, String[]) - Method in class uk.ac.ic.doc.automed.matching.modules.probability.binary.JaroExistenceModule
 
containsInstance(AbstractStringDistance, String, String[]) - Method in class uk.ac.ic.doc.automed.matching.modules.probability.senary.JaccardExistenceModule
 
containsInstance(AbstractStringDistance, String, String[]) - Method in class uk.ac.ic.doc.automed.matching.modules.probability.senary.JaroAtomicExistenceModule
 
containsInstance(AbstractStringDistance, String, String[]) - Method in class uk.ac.ic.doc.automed.matching.modules.probability.senary.JaroExistenceModule
 
containsInstance(Object) - Method in class uk.ac.ic.doc.automed.matching.SchemaElement
Returns true if the SchemaElement object contains the specified instance.
containsRelationship(SemanticRelationship[], SemanticRelationship) - Static method in class uk.ac.ic.doc.automed.matching.RelationshipExtractor
Returns true if the specified relationship appears in the array of relationships
containsSchemaObject(String) - Method in class uk.ac.ic.doc.automed.reps.Schema
 
containsSubGoal(List) - Method in class uk.ac.ic.doc.rodex.qproc.QueryAnalyser
Check if a query/view contains some sub-goals
CONTENT - Static variable in class uk.ac.ic.doc.automed.p2p.protocol.P2PConstants
 
CONTEXT - Static variable in class uk.ac.ic.doc.automed.p2p.protocol.P2PConstants
 
contract - Static variable in class uk.ac.ic.doc.automed.reps.Syntax.Token
 
convertIntoObjects(List) - Static method in class uk.ac.ic.doc.automed.p2p.directory.ModelDescription
 
convertIntoObjects(List) - Static method in class uk.ac.ic.doc.automed.p2p.directory.PeerDescription
 
convertIntoObjects(List) - Static method in class uk.ac.ic.doc.automed.p2p.directory.SchemaDescription
 
convertIntoObjects(List) - Static method in class uk.ac.ic.doc.automed.p2p.PathwayDescription
A method for creating a pathway abstraction objects from a List of records
convertPathToTP(Schema[]) - Method in class uk.ac.ic.doc.automed.reps.Pathway
Create a list of Transformation objects that represent each transformation step from one schema to the next included in path
copy(List) - Static method in class uk.ac.ic.doc.automed.util.ListUtil
 
copyEnd - Variable in class uk.ac.bbk.dcs.automed.qproc.functions.internal.CallToWrapper
 
copyGraphCalls - Static variable in class uk.ac.bbk.dcs.automed.qproc.iql.Cell
 
copyOfASG() - Method in class uk.ac.bbk.dcs.automed.qproc.iql.ASG
Creates and returns an exact copy of the ASG.
copyOfASG() - Method in class uk.ac.ic.doc.automed.qproc.ASGQuery
Creates and returns an exact copy of the ASG.
copyOfGraph() - Method in class uk.ac.bbk.dcs.automed.qproc.iql.Cell
Returns an exact copy of the ASG
copyOfGraphTimeSpent - Static variable in class uk.ac.bbk.dcs.automed.qproc.iql.Cell
 
copyStart - Variable in class uk.ac.bbk.dcs.automed.qproc.functions.internal.CallToWrapper
 
copyTimeSpent - Static variable in class uk.ac.bbk.dcs.automed.qproc.functions.internal.CallToWrapper
 
Count - Class in uk.ac.bbk.dcs.automed.qproc.functions.collections
 
Count() - Constructor for class uk.ac.bbk.dcs.automed.qproc.functions.collections.Count
 
count() - Method in class uk.ac.ic.doc.automed.matching.modules.bidirectionalmap.Vectors
 
countAppearances(String, char) - Static method in class uk.ac.ic.doc.automed.matching.Util
 
createAccessMethod(AutoMedObject) - Method in class uk.ac.ic.doc.automed.p2p.tree.ObjectBuilder
 
createAccessMethod(Schema, String, Protocol, String, String) - Static method in class uk.ac.ic.doc.automed.reps.AccessMethod
Used to created an AccessMethod where no password is required to access the data source.
createAccessMethod(Schema, String, Protocol, String, String, String, String, int) - Static method in class uk.ac.ic.doc.automed.reps.AccessMethod
Creates a new access method.
createAccessMethod(int, String, int, String, String, String, String, int) - Static method in class uk.ac.ic.doc.automed.STR
Add the access methods of a schema to the STR.
Precondition: The schema whose access methods are being added must already exist in the schemas table.
createAddTransformation(Schema, Construct, Object[], String, String) - Static method in class uk.ac.ic.doc.automed.reps.Transformation
Creates a new ADD transformation.
createAddTransformation(Schema, Construct, AutoMedType, Object[], String, String) - Static method in class uk.ac.ic.doc.automed.reps.Transformation
 
createAddTransformation(Schema, Construct, Object[], String, String, String) - Static method in class uk.ac.ic.doc.automed.reps.Transformation
Creates an ADD transformation.
createAutoMedModel() - Method in class uk.ac.ic.doc.automed.wrappers.SQLWrapperFactory
Define a relational modelling language for the SQL standard which is an "AutoMed" oriented modelling language..
createAutoMedNumberRanges(int, int, int) - Static method in class uk.ac.ic.doc.automed.util.NumberToolkit
Devide an integer range into an equal number of disjoint, equal-sized sub-ranges
createAutoMedObjectsFromTree() - Method in class uk.ac.ic.doc.automed.p2p.tree.ASGObjectBuilder
An overloading method for creating Schema object
createAutoMedObjectsFromTree(boolean) - Method in class uk.ac.ic.doc.automed.p2p.tree.ModelObjectBuilder
An overloading method for creating Model object.
createAutoMedObjectsFromTree() - Method in class uk.ac.ic.doc.automed.p2p.tree.ObjectBuilder
 
createAutoMedObjectsFromTree() - Method in class uk.ac.ic.doc.automed.p2p.tree.PathwayAbstractObjectBuilder
An overloading method for creating Schema object
createAutoMedObjectsFromTree() - Method in class uk.ac.ic.doc.automed.p2p.tree.PathwayDescriptionObjectBuilder
An overloading method for creating Schema object
createAutoMedObjectsFromTree(Schema) - Method in class uk.ac.ic.doc.automed.p2p.tree.SchemaObjectBuilder
An overloading method for creating Schema object
createAutoMedObjectsFromTree() - Method in class uk.ac.ic.doc.automed.p2p.tree.TransformationAbstractionBuilder
An overloading method for creating Schema object
createAutoMedSchema(AutoMedWrapper, String) - Method in class uk.ac.bbk.dcs.automed.hdmstore.HdmWrapperFactory
 
createAutoMedSchema(AutoMedWrapper, String) - Method in class uk.ac.bbk.dcs.automed.xml.wrappers.XMLWrapperFactory
 
createAutoMedSchema(AutoMedWrapper, String) - Method in class uk.ac.ic.doc.automed.wrappers.AutoMedWrapperFactory
Create an AutoMed oriented schema from the source oriented schema.
createAutoMedSchema(AutoMedWrapper, String) - Method in class uk.ac.ic.doc.automed.wrappers.CSVWrapperFactory
Create the AutoMed schema for the CSV document
createAutoMedSchema(AutoMedWrapper, String) - Method in class uk.ac.ic.doc.automed.wrappers.HDMWrapperFactory
 
createAutoMedSchema(AutoMedWrapper, String) - Method in class uk.ac.ic.doc.automed.wrappers.P2PWrapperFactory
 
createAutoMedSchema(AutoMedWrapper, String) - Method in class uk.ac.ic.doc.automed.wrappers.QueryCacheWrapperFactory
Create a new AutoMed-oriented schema for the cache by summarising the BAV rules of all distinct schema objects used in the materialised views
createAutoMedSchema(AutoMedWrapper, String) - Method in class uk.ac.ic.doc.automed.wrappers.SQLWrapperFactory
 
createAutoMedSchema(AutoMedWrapper, String) - Method in class uk.ac.ic.doc.automed.wrappers.UMLWrapperFactory
Create the AutoMed schema for the UML document This method does nothing in this case.
createAutoMedSchema(AutoMedWrapper, String) - Method in class uk.ac.ic.doc.automed.wrappers.XMLSchemaWrapperFactory
Create the AutoMed schema from the XSDOM representation of the XML Schema document
createAutoMedSchema(AutoMedWrapper, String) - Method in class uk.ac.ic.doc.automed.wrappers.YattaWrapperFactory
Create an AutoMed oriented schema from the source oriented schema.
createClassInstance(String, Class[], Object[]) - Static method in class uk.ac.ic.doc.automed.util.ModuleConnector
Create a new class instance using a declared constructor
createClassSingleInstance(String, Class[], Object[]) - Static method in class uk.ac.ic.doc.automed.util.ModuleConnector
Create a class instance using getInstance() method
createClusters() - Method in class uk.ac.ic.doc.automed.matching.modules.bidirectionalmap.Clusterer
 
createClusters() - Method in class uk.ac.ic.doc.automed.matching.modules.bidirectionalmap.JSomClusterer
 
createClusters() - Method in class uk.ac.ic.doc.automed.matching.modules.bidirectionalmap.MapDisplay
 
createConjunctiveQueries(List, List) - Method in class uk.ac.ic.doc.rodex.qproc.MiniConQueryRewriter
Create the conjunctive queries from MCDs
createConjunctiveQueries(List, List) - Method in class uk.ac.ic.doc.rodex.qproc.MiniConQueryRewriterNonConjunctive
Create the conjunctive queries from MCDs
createConstruct(int, String, int, boolean) - Static method in class uk.ac.ic.doc.automed.MDR
Creates a new construct for a modelling language
createConstruct(String, int, boolean) - Method in class uk.ac.ic.doc.automed.reps.Model
Creates a new construct and add to the model.
createConstructConstraint(int, String, String) - Static method in class uk.ac.ic.doc.automed.MDR
Create a new construct constraint
createConstructScheme(int, int, int, boolean, int, int, int) - Static method in class uk.ac.ic.doc.automed.MDR
Creates a new constructScheme argument for a construct
createConstructScheme(int, Construct, boolean, int, int, int) - Method in class uk.ac.ic.doc.automed.reps.Construct
Semi-deprecated! See the various addXxxScheme() methods.
createContractTransformation(Schema, SchemaObject, String, String) - Static method in class uk.ac.ic.doc.automed.reps.Transformation
Creates an CONTRACT transformation.
createContractTransformation(Schema, SchemaObject, String, String, String) - Static method in class uk.ac.ic.doc.automed.reps.Transformation
Creates an CONTRACT transformation.
createDaemon(String, String, int, RequestListener, boolean) - Static method in class uk.ac.ic.doc.automed.p2p.AutoMedMessagingHelper
Initiates a network daemon for an AutoMedPeer to listen to other peers' requests
.
createDB(String, boolean, EntryBinding) - Method in class uk.ac.ic.doc.automed.util.persist.PersistentDBController
Create a new persistent database
createDBtables() - Method in class uk.ac.bbk.dcs.automed.hdmstore.HdmStore
 
createDBtables(String) - Method in class uk.ac.bbk.dcs.automed.hdmstore.HdmStore
Check to see if the repository tables are in place on the HDM store data source.
createDeleteTransformation(Schema, SchemaObject, String, String) - Static method in class uk.ac.ic.doc.automed.reps.Transformation
Creates a DELETE transformation.
createDeleteTransformation(Schema, SchemaObject, String, String, String) - Static method in class uk.ac.ic.doc.automed.reps.Transformation
Creates a DELETE transformation.
createDomDocAsWell(OutputStream) - Method in class uk.ac.ic.doc.automed.xml.XMLWriter
for debug purposes you may want to create your XML via a DOM document builder
createDOMDocument(Element, String, String) - Static method in class uk.ac.bbk.dcs.automed.xml.utilities.XMLUtilities
Creates a new file named "fileName" in path "filePath", with only the root, named "rootName", and returns its DOM representation.
createEditor(Positionable, boolean) - Method in class uk.ac.ic.doc.automed.editor.Gui.EditorFrame
Create an EditorFrame for a Positionable in the GUI.
createEditorFrame(Positionable) - Method in class uk.ac.ic.doc.automed.editor.Gui
Open an editor window on a Positionable (e.g.
createExtendTransformation(Schema, Construct, Object[], String, String) - Static method in class uk.ac.ic.doc.automed.reps.Transformation
Creates an EXTEND transformation.
createExtendTransformation(Schema, Construct, Object[], String, String, String) - Static method in class uk.ac.ic.doc.automed.reps.Transformation
Creates an EXTEND transformation.
createFields() - Method in class uk.ac.ic.doc.automed.editor.GUITool
 
createFields() - Method in class uk.ac.ic.doc.automed.editor.IQLTool
 
createFields() - Method in class uk.ac.ic.doc.automed.editor.MatchingTool
 
createFields() - Method in class uk.ac.ic.doc.automed.editor.PathwayOptimiserTool
 
createFields() - Method in class uk.ac.ic.doc.automed.editor.ReportException
 
createFields() - Method in class uk.ac.ic.doc.automed.editor.WrapperTool
 
createFields() - Method in class uk.ac.ic.doc.automed.editor.XMLSchemaEditor
 
createFields() - Method in class uk.ac.ic.doc.rodex.p2p.gui.CacheViewerFrame
Implements GUITool abstract methods
createFields() - Method in class uk.ac.ic.doc.rodex.p2p.gui.QueryTool
Create Gui controls
createFollowingSchemaName() - Method in class uk.ac.ic.doc.automed.reps.Schema
 
createFollowingSchemaName(String) - Method in class uk.ac.ic.doc.automed.reps.Schema
Generate a name of a schema that "appears" to be following the name used for this Schema, and which has not already been used as a Schema name
createFrom(List, List) - Static method in class uk.ac.ic.doc.automed.p2p.directory.ModelDescription
 
createFrom(List, List) - Static method in class uk.ac.ic.doc.automed.p2p.directory.PeerDescription
 
createFrom(List, List) - Static method in class uk.ac.ic.doc.automed.p2p.directory.SchemaDescription
 
createFrom(AbstractMessage) - Method in interface uk.ac.ic.doc.automed.p2p.messages.applicationlayer.ApplicationMessage
 
createFrom(AbstractMessage) - Method in class uk.ac.ic.doc.automed.p2p.messages.applicationlayer.BrokerAllQuery
 
createFrom(AbstractMessage) - Method in class uk.ac.ic.doc.rodex.p2p.messages.applicationlayer.HelloMsg
Return an instance of this message created from a given AbstractMessage This method is used by the receiving peer to decode the message
createFrom(AbstractMessage) - Method in class uk.ac.ic.doc.rodex.p2p.messages.applicationlayer.SchemaAdvertMsg
Return an instance of this message created from a given AbstractMessage This method is used by the receiving peer to decode the message
createFrom(AbstractMessage) - Method in class uk.ac.ic.doc.rodex.p2p.messages.applicationlayer.SchemaRegMsg
Return an instance of this message created from a given AbstractMessage This method is used by the receiving peer to decode the message
createFromGlobalId(String) - Static method in class uk.ac.ic.doc.automed.reps.PersistentKey
 
createFromIdAndClass(String, Class) - Static method in class uk.ac.ic.doc.automed.reps.PersistentKey
 
createHdmStore(String, String) - Method in class uk.ac.bbk.dcs.automed.hdmstore.HdmStore
Create a logical HDM store for the given schema.
createIdentTransformation(Schema, Schema) - Method in class uk.ac.bbk.dcs.automed.evolution.schemaModelEvolution.ExtensionalSchemaEvolution
 
createIdentTransformation(Schema, Schema, String, String) - Static method in class uk.ac.ic.doc.automed.reps.Transformation
Creates an IDENT transformation.
createIdentTransformations(Schema, Schema, String, String) - Static method in class uk.ac.ic.doc.automed.reps.Transformation
Deprecated. Use #createIdentTransformations() instead.
createIDFromNumber(long) - Static method in class uk.ac.ic.doc.automed.p2p.overlay.OverlayToolKit
Create a DHT-compatible ID for an integral number
createIDFromString(String) - Static method in class uk.ac.ic.doc.automed.p2p.overlay.OverlayToolKit
Create an ID object from a String
CreateInstanceException - Exception in uk.ac.ic.doc.automed.util
 
CreateInstanceException(String) - Constructor for exception uk.ac.ic.doc.automed.util.CreateInstanceException
Creates a new instance of CreateInstanceException
CreateInstanceException(String, Throwable) - Constructor for exception uk.ac.ic.doc.automed.util.CreateInstanceException
 
createIntSchemaName(String, boolean, boolean) - Static method in class uk.ac.ic.doc.automed.reps.Transformation
Creates a name for an intentional schema based on a given schema.
createJTree() - Method in class uk.ac.ic.doc.automed.xmlschema.tree.BuildJTree
Create the JTree
createLogger() - Static method in class uk.ac.bbk.dcs.automed.qproc.QProcLogger
 
createModel(String) - Static method in class uk.ac.ic.doc.automed.MDR
Creates a new data modelling language which can then have constructs added.
createModel(AutoMedObject, boolean) - Method in class uk.ac.ic.doc.automed.p2p.tree.ModelObjectBuilder
Create a model object from the corresponding tree
createModel(AutoMedObject) - Method in class uk.ac.ic.doc.automed.p2p.tree.ObjectBuilder
Deprecated. use ModelObjectBuilder.createModel(AutoMedObject objectNode, overwrite) instead
createModel(String) - Static method in class uk.ac.ic.doc.automed.reps.Model
Creates a new model with the given name.
createModel() - Method in class uk.ac.ic.doc.automed.wrappers.CSVWrapperFactory
Define the CSV model in the Automed MDR database
createModel() - Method in class uk.ac.ic.doc.automed.wrappers.HDMWrapperFactory
Define the xmlschema model in the Automed MDR database
createModel() - Method in class uk.ac.ic.doc.automed.wrappers.SQLWrapperFactory
Define a relational modelling language for the SQL standard, together with the JDBC protocol for accessing SQL compliant databases.
createModel() - Method in class uk.ac.ic.doc.automed.wrappers.UMLWrapperFactory
Define the UML model in the Automed MDR database
createModel() - Method in class uk.ac.ic.doc.automed.wrappers.XMLSchemaWrapperFactory
Define the xmlschema model in the Automed MDR database
createNew() - Method in class uk.ac.bbk.dcs.automed.evolution1.Evolution
 
createNew() - Method in class uk.ac.bbk.dcs.automed.evolution1.ExtensionalSchemaEvolution
 
createNew() - Method in class uk.ac.bbk.dcs.automed.evolution1.VirtualSchemaEvolution
 
createNew() - Method in class uk.ac.bbk.dcs.automed.evolution2.schemaEvolution.ExtensionalSchemaEvolution
 
createNew() - Method in class uk.ac.bbk.dcs.automed.evolution2.schemaEvolution.IntegratedSchemaEvolution
 
createNew() - Method in class uk.ac.bbk.dcs.automed.evolution2.schemaEvolution.SchemaEvolution
 
createNewOneStep() - Method in class uk.ac.bbk.dcs.automed.evolution1.Evolution
 
createNewOneStep() - Method in class uk.ac.bbk.dcs.automed.evolution1.ExtensionalSchemaEvolution
 
createNewOneStep() - Method in class uk.ac.bbk.dcs.automed.evolution1.VirtualSchemaEvolution
 
createNewOneStep() - Method in class uk.ac.bbk.dcs.automed.evolution2.schemaEvolution.ExtensionalSchemaEvolution
 
createNewOneStep() - Method in class uk.ac.bbk.dcs.automed.evolution2.schemaEvolution.IntegratedSchemaEvolution
 
createNewOneStep() - Method in class uk.ac.bbk.dcs.automed.evolution2.schemaEvolution.SchemaEvolution
 
createNoneConjunctiveQueries(List, List) - Method in class uk.ac.ic.doc.rodex.qproc.MiniConQueryRewriterNonConjunctive
 
createNumberRanges(int, int, int) - Static method in class uk.ac.ic.doc.automed.util.NumberToolkit
Devide an integer range into an equal number of disjoint, equal-sized sub-ranges
createObjectNode(PersistentObject) - Static method in class uk.ac.ic.doc.automed.p2p.tree.TreeNode
 
createOutputQuery() - Method in class uk.ac.ic.doc.rodex.qproc.QueryRewriterResult
Create output query from rewritten query and remainder query
createPathway(AutoMedObject) - Method in class uk.ac.ic.doc.automed.p2p.tree.ObjectBuilder
 
createPathway(Schema[]) - Static method in class uk.ac.ic.doc.automed.reps.Pathway
 
createPathwayAbstraction(String, String, String, String, float) - Method in class uk.ac.ic.doc.automed.p2p.tree.PathwayAbstractObjectBuilder
Create a PathwayAbstraction object from tree
createPattern(String, String) - Static method in class uk.ac.ic.doc.automed.ssd.Pattern
 
createPattern(String, String) - Static method in class uk.ac.ic.doc.automed.SSMDR
Adds a new pattern to the SSMDR.
createPatternSobjAssociation(int, int, int, int) - Static method in class uk.ac.ic.doc.automed.SSMDR
Add the association between ssdpattern and schema object to the SSMDR.
createProtocol(String) - Static method in class uk.ac.ic.doc.automed.reps.Protocol
Creates a new protocol.
createProtocol(String) - Static method in class uk.ac.ic.doc.automed.STR
Add the given protocol to the STR.
createQueryFromSubGoals(List) - Method in class uk.ac.ic.doc.rodex.qproc.MiniConQueryRewriter
 
createRandomID() - Static method in class uk.ac.ic.doc.automed.p2p.overlay.OverlayToolKit
Create a random DHT-compatible ID
createRelationalTables() - Method in class uk.ac.ic.doc.automed.reps.RelationalOutputter
Create the relational tables from the automed schema objects
createRenameTransformation(Schema, SchemaObject, Object[]) - Static method in class uk.ac.ic.doc.automed.reps.Transformation
Creates a RENAME transformation.
createRenameTransformation(Schema, SchemaObject, Object[], String) - Static method in class uk.ac.ic.doc.automed.reps.Transformation
Creates a RENAME transformation.
createResultQuery() - Method in class uk.ac.ic.doc.rodex.qproc.QueryRewriterResult
Create result query from cached result (of the rewritten query) and remainder query, i.e.
createSchema(AutoMedObject) - Method in class uk.ac.ic.doc.automed.p2p.tree.ObjectBuilder
Edited by dmle on 13/11/2005 to make this method package-scope
createSchema(Reference) - Method in class uk.ac.ic.doc.automed.p2p.tree.ObjectBuilder
 
createSchema(AutoMedObject, Schema) - Method in class uk.ac.ic.doc.automed.p2p.tree.SchemaObjectBuilder
An overloading method to create a new Schema object.
createSchema(String, boolean) - Static method in class uk.ac.ic.doc.automed.reps.Schema
Creates a new schema.
createSchema(String) - Static method in class uk.ac.ic.doc.automed.reps.Schema
Creates a new STORED_TYPE schema.
createSchema(String, int, Schema) - Static method in class uk.ac.ic.doc.automed.reps.Schema
Creates a new schema.
createSchema(String, int, int) - Static method in class uk.ac.ic.doc.automed.STR
Adds a new schema to the STR.
createSchemaObject(Construct, Object[], int) - Method in class uk.ac.ic.doc.automed.reps.Schema
Create a schema object with type_id
createSchemaObject(Construct, Object[]) - Method in class uk.ac.ic.doc.automed.reps.Schema
Creates a schema object.
createSchemaObject(Construct, AutoMedType, Object[]) - Method in class uk.ac.ic.doc.automed.reps.Schema
 
createSchemaObject(Schema, Construct, Object[]) - Static method in class uk.ac.ic.doc.automed.reps.SchemaObject
All schemaobjects belong to schemas Creates a new schema object.
createSchemaObject(Schema, Construct, AutoMedType, Object[]) - Static method in class uk.ac.ic.doc.automed.reps.SchemaObject
 
createSchemaObject(int, int, String) - Static method in class uk.ac.ic.doc.automed.STR
Adds a new schema object to the STR.
createSchemaObject(int, int, int, String) - Static method in class uk.ac.ic.doc.automed.STR
As above but with the AMType in
createSchemaObjectFromDB(int, Schema) - Static method in class uk.ac.ic.doc.automed.reps.SchemaObject
Instantiates a SchemaObject whose record already exists in the STR.
createScheme(int, int, int) - Static method in class uk.ac.ic.doc.automed.STR
Adds a scheme to the STR.
createSSDFormat(String, Schema) - Static method in class uk.ac.ic.doc.automed.ssd.SSDFormat
Create a SSDFormat
createSSDFormat(String) - Static method in class uk.ac.ic.doc.automed.SSMDR
Adds a new ssdformat to the SSMDR.
createSSDPattern(Pattern) - Method in class uk.ac.ic.doc.automed.ssd.SSDFormat
 
createSSDPattern(int) - Static method in class uk.ac.ic.doc.automed.SSMDR
Adds a ssdpattern to the SSMDR.
createTransformation(String, int, int, int, int, String, String) - Static method in class uk.ac.ic.doc.automed.STR
Adds a transformation to the STR between two existing schemas, which must not already have a transformation between them.
createTree(PersistentObject) - Static method in class uk.ac.ic.doc.automed.p2p.tree.TreeNode
 
createTree(PersistentObject[]) - Static method in class uk.ac.ic.doc.automed.p2p.tree.TreeNode
 
createTreeFromObjects(PersistentObject[]) - Static method in class uk.ac.ic.doc.automed.p2p.tree.TransformationAbstractionBuilder
Create the actual tree from objects
createType(int, String, int, int) - Static method in class uk.ac.ic.doc.automed.MDR
Create a new record in type hierarchy table
createTypeHierarchies() - Static method in class uk.ac.ic.doc.automed.reps.TypeHierarchy
Load all the type information for all models into a static hashMap This method is called once when the system is started into the types hash map
createTypeHierarchy() - Method in class uk.ac.bbk.dcs.automed.hdmstore.HdmWrapperFactory
 
createTypeHierarchy() - Method in class uk.ac.ic.doc.automed.wrappers.HDMWrapperFactory
 
createTypeHierarchy() - Method in class uk.ac.ic.doc.automed.wrappers.P2PWrapperFactory
 
createTypeHierarchy() - Method in class uk.ac.ic.doc.automed.wrappers.YattaWrapperFactory
 
createXSDOM() - Method in class uk.ac.ic.doc.automed.xmlschema.XMLSchemaBuilder
Build up an internal representation of any XMLSchema nodes in the AutoMed Schema we're looking at
createXSDOMRepresentation(String) - Method in class uk.ac.ic.doc.automed.wrappers.XMLSchemaWrapper
Create an internal representation of the XML Schema.
CrimeFunctionTable - Class in uk.ac.bbk.dcs.automed.xml.experiments.crime
FunctionTable containing XML-related IQL functions.
CrimeFunctionTable() - Constructor for class uk.ac.bbk.dcs.automed.xml.experiments.crime.CrimeFunctionTable
 
CrimeIQLFun1 - Class in uk.ac.bbk.dcs.automed.xml.experiments.crime
 
CrimeIQLFun1() - Constructor for class uk.ac.bbk.dcs.automed.xml.experiments.crime.CrimeIQLFun1
 
CrimeSchemaConform - Class in uk.ac.bbk.dcs.automed.xml.experiments.crime
Class Task Description
CrimeSchemaConform() - Constructor for class uk.ac.bbk.dcs.automed.xml.experiments.crime.CrimeSchemaConform
 
CrimeSchemaMaterialisation - Class in uk.ac.bbk.dcs.automed.xml.experiments.crime
Class Task Description
CrimeSchemaMaterialisation() - Constructor for class uk.ac.bbk.dcs.automed.xml.experiments.crime.CrimeSchemaMaterialisation
 
CrimeSchemaQuery - Class in uk.ac.bbk.dcs.automed.xml.experiments.crime
Class Task Description
CrimeSchemaQuery() - Constructor for class uk.ac.bbk.dcs.automed.xml.experiments.crime.CrimeSchemaQuery
 
CrimeSchemaQueryTest - Class in uk.ac.bbk.dcs.automed.xml.experiments.crime
Class Task Description
CrimeSchemaQueryTest() - Constructor for class uk.ac.bbk.dcs.automed.xml.experiments.crime.CrimeSchemaQueryTest
 
CrimeSchemaWrap - Class in uk.ac.bbk.dcs.automed.xml.experiments.crime
Class Task Description
CrimeSchemaWrap() - Constructor for class uk.ac.bbk.dcs.automed.xml.experiments.crime.CrimeSchemaWrap
 
CrimeTest - Class in uk.ac.bbk.dcs.automed.xml.experiments.crime
Class Task Description
CrimeTest() - Constructor for class uk.ac.bbk.dcs.automed.xml.experiments.crime.CrimeTest
 
CSV_COLOUR - Static variable in class uk.ac.ic.doc.automed.wrappers.CSVWrapperFactory
 
CSV_MODEL_ELEMENT - Static variable in class uk.ac.ic.doc.automed.wrappers.CSVWrapperFactory
 
CSV_MODEL_LINK - Static variable in class uk.ac.ic.doc.automed.wrappers.CSVWrapperFactory
 
CSV_MODEL_NAME - Static variable in class uk.ac.ic.doc.automed.wrappers.CSVWrapperFactory
Constants
CSV_MODEL_PREFIX - Static variable in class uk.ac.ic.doc.automed.wrappers.CSVWrapperFactory
 
CSV_MODEL_ROOT - Static variable in class uk.ac.ic.doc.automed.wrappers.CSVWrapperFactory
 
CSVWrapper - Class in uk.ac.ic.doc.automed.wrappers
 
CSVWrapper() - Constructor for class uk.ac.ic.doc.automed.wrappers.CSVWrapper
Creates a new, empty instance of XMLSchemaWrapper
CSVWrapper(AccessMethod, String) - Constructor for class uk.ac.ic.doc.automed.wrappers.CSVWrapper
This constructor is used when querying the schema
CSVWrapperFactory - Class in uk.ac.ic.doc.automed.wrappers
 
CSVWrapperFactory() - Constructor for class uk.ac.ic.doc.automed.wrappers.CSVWrapperFactory
Creates a new instance of CSVWrapperFactory
curChar - Variable in class uk.ac.bbk.dcs.automed.qproc.annotate.grammars.schemes.SchemesTokenManager
 
curChar - Variable in class uk.ac.bbk.dcs.automed.qproc.annotate.grammars.simpleComp.SimpleCompTokenManager
 
curChar - Variable in class uk.ac.bbk.dcs.automed.qproc.annotate.grammars.simpleCompAppend.SimpleCompAppendTokenManager
 
curChar - Variable in class uk.ac.bbk.dcs.automed.qproc.annotate.grammars.simpleCompAppendMonus.SimpleCompAppendMonusTokenManager
 
curChar - Variable in class uk.ac.bbk.dcs.automed.qproc.translators.xquery.XQuery2IQLTokenManager
 
currentQuery - Variable in class uk.ac.ic.doc.automed.editor.IQLTool
 
currentSchema - Static variable in class uk.ac.ic.doc.automed.editor.autolayout.AutoLayoutPositionable
 
currentToken - Variable in exception uk.ac.bbk.dcs.automed.qproc.annotate.grammars.schemes.ParseException
This is the last token that has been consumed successfully.
currentToken - Variable in exception uk.ac.bbk.dcs.automed.qproc.annotate.grammars.simpleComp.ParseException
This is the last token that has been consumed successfully.
currentToken - Variable in exception uk.ac.bbk.dcs.automed.qproc.annotate.grammars.simpleCompAppend.ParseException
This is the last token that has been consumed successfully.
currentToken - Variable in exception uk.ac.bbk.dcs.automed.qproc.annotate.grammars.simpleCompAppendMonus.ParseException
This is the last token that has been consumed successfully.
currentToken - Variable in exception uk.ac.bbk.dcs.automed.qproc.translators.xquery.ParseException
This is the last token that has been consumed successfully.
cx - Variable in class uk.ac.ic.doc.automed.editor.DefaultDrawLinkNodalVertex
 
CX_GUI - Static variable in interface uk.ac.ic.doc.automed.qproc.cache.CachePolicy
 
CX_QUERY_EVALUATOR - Static variable in interface uk.ac.ic.doc.automed.qproc.cache.CachePolicy
 
CX_QUERY_OPTIMISER - Static variable in interface uk.ac.ic.doc.automed.qproc.cache.CachePolicy
 
CX_QUERY_REFORMULATOR - Static variable in interface uk.ac.ic.doc.automed.qproc.cache.CachePolicy
 
CX_WRAPPER - Static variable in interface uk.ac.ic.doc.automed.qproc.cache.CachePolicy
 
cy - Variable in class uk.ac.ic.doc.automed.editor.DefaultDrawLinkNodalVertex
 

D

d - Variable in class uk.ac.ic.doc.automed.editor.DrawArc
 
dashedStroke - Static variable in class uk.ac.ic.doc.automed.editor.DrawArc
 
dashedStroke - Static variable in class uk.ac.ic.doc.automed.editor.DrawVertex
 
dashedStroke - Static variable in class uk.ac.ic.doc.automed.editor.EditorPanel
 
data() - Method in class uk.ac.bbk.dcs.automed.qproc.iql.Cell
Returns the Object contained in the Cell
DATA_SIZE - Static variable in class uk.ac.ic.doc.automed.wrappers.SQLWrapperFactory
A feature option to model the size in bytes of a column as part of a column in any Schema the factory generates
data_source - Static variable in class uk.ac.ic.doc.automed.reps.Syntax.Token
 
DATA_SOURCE_TYPE - Static variable in class uk.ac.ic.doc.automed.reps.Schema
In addition to the properties of STORED_TYPE schemas, DATA_SOURCE_TYPE schemas have some external data source that they represent.
DATA_TYPE - Static variable in class uk.ac.ic.doc.automed.wrappers.SQLWrapperFactory
A feature option to model the datatype of a column as part of a column in any Schema the factory generates
DataEvolution - Class in uk.ac.bbk.dcs.automed.evolution.dataEvolution
 
DataEvolution() - Constructor for class uk.ac.bbk.dcs.automed.evolution.dataEvolution.DataEvolution
 
DataEvolution - Class in uk.ac.bbk.dcs.automed.evolution2.dataEvolution
 
DataEvolution() - Constructor for class uk.ac.bbk.dcs.automed.evolution2.dataEvolution.DataEvolution
 
DataEvolutionException - Exception in uk.ac.bbk.dcs.automed.evolution.dataEvolution
 
DataEvolutionException(String) - Constructor for exception uk.ac.bbk.dcs.automed.evolution.dataEvolution.DataEvolutionException
 
DataEvolutionException - Exception in uk.ac.bbk.dcs.automed.evolution2.dataEvolution
 
DataEvolutionException(String) - Constructor for exception uk.ac.bbk.dcs.automed.evolution2.dataEvolution.DataEvolutionException
 
DataLineageTracing - Class in uk.ac.bbk.dcs.automed.dataWarehousing.dlt
 
DataLineageTracing(Schema, Schema) - Constructor for class uk.ac.bbk.dcs.automed.dataWarehousing.dlt.DataLineageTracing
 
DataSource - Class in uk.ac.ic.doc.automed.reps
DataSource.java Represents the data source published by a peer to the network.
DataSource(String, String, int) - Constructor for class uk.ac.ic.doc.automed.reps.DataSource
Creates a new instance of DataSource
DataSourceException - Exception in uk.ac.ic.doc.automed.wrappers
Generated when some problem occurs when accessing a data source, such as the wrong password being supplied.
DataSourceException(String) - Constructor for exception uk.ac.ic.doc.automed.wrappers.DataSourceException
Creates an DataSourceException when there has been no Exception that caused the error to discovered.
DataSourceException(String, Exception) - Constructor for exception uk.ac.ic.doc.automed.wrappers.DataSourceException
Creates an DataSourceException when it is acting as a wrapper for other Exceptions.
DataSourceRepository - Class in uk.ac.ic.doc.automed
Deprecated. Old name for DSR
DataSourceRepository() - Constructor for class uk.ac.ic.doc.automed.DataSourceRepository
Deprecated.  
DataSourceRepositoryException - Exception in uk.ac.ic.doc.automed
Deprecated. Old name for DSRException.
DataSourceRepositoryException(String) - Constructor for exception uk.ac.ic.doc.automed.DataSourceRepositoryException
Deprecated.  
dataToSend - Variable in class uk.ac.ic.doc.automed.p2p.communication.AbstractClient
 
dataType() - Method in class uk.ac.bbk.dcs.automed.hdmstore.EdgeElement
get the dataType
dataType() - Method in class uk.ac.bbk.dcs.automed.hdmstore.Span
Get the dataType
DataTypeModule - Class in uk.ac.ic.doc.automed.matching.modules.bidirectionalmap
The module that compares the data types of the schema elements
DataTypeModule(ArrayList, ArrayList) - Constructor for class uk.ac.ic.doc.automed.matching.modules.bidirectionalmap.DataTypeModule
Constructs a DataTypeModule to compare the specified schema elements in the input lists.
DataTypeModule(SchemaElement[], SchemaElement[]) - Constructor for class uk.ac.ic.doc.automed.matching.modules.bidirectionalmap.DataTypeModule
Constructs a DataTypeModule to compare the specified schema elements in the input arrays.
DataTypeModule(SchemaElementPair[]) - Constructor for class uk.ac.ic.doc.automed.matching.modules.bidirectionalmap.DataTypeModule
 
DataTypeModule - Class in uk.ac.ic.doc.automed.matching.modules.intervals
The module that compares the data types of the schema elements
DataTypeModule(SchemaElementPair[]) - Constructor for class uk.ac.ic.doc.automed.matching.modules.intervals.DataTypeModule
 
DataTypeModule - Class in uk.ac.ic.doc.automed.matching.modules.probability.binary
The module that compares the data types of the schema elements
DataTypeModule(SchemaElementPair[]) - Constructor for class uk.ac.ic.doc.automed.matching.modules.probability.binary.DataTypeModule
 
DataTypeModule - Class in uk.ac.ic.doc.automed.matching.modules.probability.senary
The module that compares the data types of the schema elements
DataTypeModule(SchemaElementPair[]) - Constructor for class uk.ac.ic.doc.automed.matching.modules.probability.senary.DataTypeModule
 
DATE_TOKEN - Static variable in class uk.ac.ic.doc.automed.wrappers.AutoMedQuery
 
DateFunctionTable - Class in uk.ac.bbk.dcs.automed.qproc.functions.date
FunctionTable containing date-related IQL functions.
DateFunctionTable() - Constructor for class uk.ac.bbk.dcs.automed.qproc.functions.date.DateFunctionTable
 
DateTimeToken - Static variable in class uk.ac.bbk.dcs.automed.qproc.iql.QSym
 
dateTimeType - Static variable in class uk.ac.bbk.dcs.automed.qproc.iql.Cell
 
DateUtil - Class in uk.ac.ic.doc.automed.util
 
dateValue() - Method in class uk.ac.ic.doc.automed.wrappers.AutoMedTime
 
datum - Variable in class uk.ac.ic.doc.automed.xml.XMLToken
 
DAY - Static variable in class uk.ac.ic.doc.automed.wrappers.AutoMedTime
Granularity of one day
DB_ENV_CACHE_PATH - Static variable in class uk.ac.ic.doc.automed.util.persist.PersistentDBController
 
DB_ENV_FILE_PATH - Static variable in class uk.ac.ic.doc.automed.util.persist.PersistentDBController
 
DB_ENV_OVERLAY_PATH - Static variable in class uk.ac.ic.doc.automed.util.persist.PersistentDBController
 
DB_FLOAT - Static variable in class uk.ac.ic.doc.automed.util.db.DBResultSet
 
DB_INT - Static variable in class uk.ac.ic.doc.automed.util.db.DBResultSet
 
DB_STRING - Static variable in class uk.ac.ic.doc.automed.util.db.DBResultSet
DB column types
DBAccess - Class in uk.ac.ic.doc.automed.util.db
 
DBAccess(String, String, String, Properties) - Constructor for class uk.ac.ic.doc.automed.util.db.DBAccess
Creates a new instance of DBAccess
DBAccessFactory - Class in uk.ac.ic.doc.automed.util.db
 
DBAccessFactory() - Constructor for class uk.ac.ic.doc.automed.util.db.DBAccessFactory
 
DBEmbedded - Class in uk.ac.ic.doc.automed.util.db
 
DBEmbedded(String, String, String, Properties) - Constructor for class uk.ac.ic.doc.automed.util.db.DBEmbedded
Create a new instance
dbFQPath - Variable in class uk.ac.ic.doc.automed.util.db.DBAccess
 
DBInstanceException - Exception in uk.ac.ic.doc.automed.util.db
 
DBInstanceException(String) - Constructor for exception uk.ac.ic.doc.automed.util.db.DBInstanceException
Creates a new instance of JDBCDriverException
DBInstanceException(String, Throwable) - Constructor for exception uk.ac.ic.doc.automed.util.db.DBInstanceException
 
DBN_QUERY_CACHE - Static variable in class uk.ac.ic.doc.automed.util.persist.PersistentDBController
 
DBPostgres - Class in uk.ac.ic.doc.automed.util.db
 
DBRecord - Class in uk.ac.ic.doc.automed.util.db
 
DBRecord(List, Vector) - Constructor for class uk.ac.ic.doc.automed.util.db.DBRecord
The order of fields is the same as in a record
DBRecordWithConstraints - Class in uk.ac.ic.doc.automed.util.db
 
DBRecordWithConstraints(List, Vector) - Constructor for class uk.ac.ic.doc.automed.util.db.DBRecordWithConstraints
The order of fields is the same as in a record
DBRecordWithConstraints(ASG, ASG) - Constructor for class uk.ac.ic.doc.automed.util.db.DBRecordWithConstraints
The order of fields is the same as in a record
DBResultSet - Class in uk.ac.ic.doc.automed.util.db
 
DBResultSet(List, Vector) - Constructor for class uk.ac.ic.doc.automed.util.db.DBResultSet
Creates a new instance of DBResultSet
DBToolKit - Class in uk.ac.ic.doc.automed.util.db
DBToolKit.java

A collection of static methods which deal with database operations
Debug - Class in uk.ac.bbk.dcs.automed.hdmstore
The Debug class allows debugging messages to be sent from a calling application.
Debug() - Constructor for class uk.ac.bbk.dcs.automed.hdmstore.Debug
Standard constructor, default message level, no logging, print to output.
Debug(int) - Constructor for class uk.ac.bbk.dcs.automed.hdmstore.Debug
Constructor with message level parameter , no logging, print to output.
Debug(int, boolean, boolean) - Constructor for class uk.ac.bbk.dcs.automed.hdmstore.Debug
Constructor with message level, logging and print to output all parameters.
Debug(int, boolean, boolean, String) - Constructor for class uk.ac.bbk.dcs.automed.hdmstore.Debug
Constructor with message level, logging, print to output and log file name all parameters.
debug - Variable in class uk.ac.bbk.dcs.automed.hdmstore.HdmStore
 
debug - Static variable in class uk.ac.ic.doc.automed.p2p.protocol.P2PConstants
 
debug(String) - Static method in class uk.ac.ic.doc.automed.util.Logger
 
debug(Object) - Static method in class uk.ac.ic.doc.automed.util.Logger
 
debug(Class, String, String) - Static method in class uk.ac.ic.doc.automed.util.Logger
Overloading method to display more information about a debug message
debug(Class, String, String, int, int) - Static method in class uk.ac.ic.doc.automed.util.Logger
Use this for a short-cut to invoking debug
debug(String, String, String) - Static method in class uk.ac.ic.doc.automed.util.Logger
Overloading method to display more information about a debug message
debug(String, String, String, int, int) - Static method in class uk.ac.ic.doc.automed.util.Logger
Use this for a short-cut to invoking debug
debug - Static variable in class uk.ac.ic.doc.automed.wrappers.AutoMedWrapper
 
DEBUG_CACHE - Static variable in class uk.ac.ic.doc.automed.util.Debugger
Debug section: cache
DEBUG_DIRECTORY - Static variable in class uk.ac.ic.doc.automed.util.Debugger
Debug section: directory service
DEBUG_DIRECTORY_REPOSITORY - Static variable in class uk.ac.ic.doc.automed.util.Debugger
 
DEBUG_DIRECTORY_TIMER - Static variable in class uk.ac.ic.doc.automed.util.Debugger
 
DEBUG_GENERAL - Static variable in class uk.ac.ic.doc.automed.STR
 
DEBUG_GENERAL - Static variable in class uk.ac.ic.doc.automed.util.Debugger
 
DEBUG_GUI - Static variable in class uk.ac.ic.doc.automed.STR
Debug information from the gui package
DEBUG_GUI - Static variable in class uk.ac.ic.doc.automed.util.Debugger
Debug information from the gui package
DEBUG_HELLO - Static variable in class uk.ac.ic.doc.automed.util.Debugger
Debug Hello protocol
DEBUG_LEVEL_ALL - Static variable in class uk.ac.ic.doc.automed.util.Debugger
All debug information
DEBUG_LEVEL_DEFAULT - Static variable in class uk.ac.ic.doc.automed.util.Debugger
No debug but report run-time errors
DEBUG_LEVEL_DETAILED - Static variable in class uk.ac.ic.doc.automed.util.Debugger
Detailed debug information
DEBUG_LEVEL_ERROR - Static variable in class uk.ac.ic.doc.automed.util.Debugger
Error information
DEBUG_LEVEL_INFO - Static variable in class uk.ac.ic.doc.automed.util.Debugger
Debug information to let user know what is going on
DEBUG_LEVEL_NONE - Static variable in class uk.ac.ic.doc.automed.util.Debugger
No debug at all
DEBUG_LEVEL_PACKET - Static variable in class uk.ac.ic.doc.automed.util.Debugger
Packet-level debug information
DEBUG_LEVEL_STD - Static variable in class uk.ac.ic.doc.automed.util.Debugger
Standard debug information
DEBUG_LEVEL_WARN - Static variable in class uk.ac.ic.doc.automed.util.Debugger
Warning information
DEBUG_P2P - Static variable in class uk.ac.ic.doc.automed.STR
Debug information from the p2p package
DEBUG_P2P - Static variable in class uk.ac.ic.doc.automed.util.Debugger
Debug information from the p2p package
DEBUG_P2P_MESSAGING - Static variable in class uk.ac.ic.doc.automed.util.Debugger
 
DEBUG_P2P_OVERLAY - Static variable in class uk.ac.ic.doc.automed.util.Debugger
 
DEBUG_PATHWAY - Static variable in class uk.ac.ic.doc.automed.STR
Debug information about pathway manipulations in the reps package
DEBUG_PATHWAY - Static variable in class uk.ac.ic.doc.automed.util.Debugger
Debug information about pathway manipulations in the reps package
DEBUG_QUERY - Static variable in class uk.ac.ic.doc.automed.util.Debugger
Debug section: query processing
DEBUG_QUERY_REWRITE - Static variable in class uk.ac.ic.doc.automed.util.Debugger
 
DEBUG_REGISTRY - Static variable in class uk.ac.ic.doc.automed.util.Debugger
Debug section: registry
DEBUG_REPOSITORY - Static variable in class uk.ac.ic.doc.automed.util.Debugger
Debug the repository
DEBUG_SCHEMA - Static variable in class uk.ac.ic.doc.automed.util.Debugger
Debug the exchange of schema information
DEBUG_WRAPPER - Static variable in class uk.ac.ic.doc.automed.STR
Debug information from the wrappers package
DEBUG_WRAPPER - Static variable in class uk.ac.ic.doc.automed.util.Debugger
Debug information from the wrappers package
Debugger - Class in uk.ac.ic.doc.automed.util
 
Debugger() - Constructor for class uk.ac.ic.doc.automed.util.Debugger
Creates a new instance of Debugger
debugPrintStackTrace(Throwable, int) - Static method in class uk.ac.ic.doc.automed.STR
Print an throwable's stack trace, but only at a certain debug level
debugPrintStackTrace(Throwable, int) - Static method in class uk.ac.ic.doc.automed.util.Debugger
Print an throwable's stack trace, but only at a certain debug level
debugStream - Variable in class uk.ac.bbk.dcs.automed.qproc.annotate.grammars.schemes.SchemesTokenManager
 
debugStream - Variable in class uk.ac.bbk.dcs.automed.qproc.annotate.grammars.simpleComp.SimpleCompTokenManager
 
debugStream - Variable in class uk.ac.bbk.dcs.automed.qproc.annotate.grammars.simpleCompAppend.SimpleCompAppendTokenManager
 
debugStream - Variable in class uk.ac.bbk.dcs.automed.qproc.annotate.grammars.simpleCompAppendMonus.SimpleCompAppendMonusTokenManager
 
debugStream - Variable in class uk.ac.bbk.dcs.automed.qproc.translators.xquery.XQuery2IQLTokenManager
 
debugString() - Method in class uk.ac.ic.doc.automed.p2p.tree.Root
 
debugString() - Method in class uk.ac.ic.doc.automed.reps.Schema
A String representation of this object useful for debugging code
debugString() - Method in class uk.ac.ic.doc.automed.reps.SchemaObject
A String representation of this object useful for debugging code
debugString() - Method in class uk.ac.ic.doc.automed.reps.Transformation
A String representation of this object useful for debugging code
debugString() - Method in class uk.ac.ic.doc.automed.reps.TransformationAbstraction
Print content
DECLARE - Static variable in interface uk.ac.bbk.dcs.automed.qproc.translators.xquery.XQuery2IQLConstants
 
deepCopySet(Set) - Static method in class uk.ac.ic.doc.automed.util.SetUtil
 
DEF_CACHE_MODE - Static variable in class uk.ac.ic.doc.rodex.qproc.QualityIndicator
 
DEF_COST - Static variable in class uk.ac.ic.doc.rodex.qproc.QualityIndicator
 
DEF_FRESHNESS - Static variable in class uk.ac.ic.doc.rodex.qproc.QualityIndicator
 
DEF_NUM_HOSTS - Static variable in class uk.ac.ic.doc.automed.p2p.overlay.OverlayController
 
DEF_QLT_INF - Static variable in class uk.ac.ic.doc.rodex.qproc.QualityIndicator
 
DEF_QLT_PW - Static variable in class uk.ac.ic.doc.rodex.qproc.QualityIndicator
 
DEF_QLTDS - Static variable in class uk.ac.ic.doc.rodex.qproc.QualityIndicator
 
DEF_RESULT_TTL - Static variable in class uk.ac.ic.doc.rodex.qproc.QualityIndicator
 
DEF_WRAPPER_ACTION - Static variable in class uk.ac.ic.doc.automed.qproc.cache.CachePolicy2
 
DEF_WRAPPER_ACTION - Static variable in class uk.ac.ic.doc.automed.qproc.cache.CachePolicy3
 
DEF_WRAPPER_ACTION - Static variable in class uk.ac.ic.doc.automed.qproc.cache.DefaultCachePolicy
 
DEFAULT - Static variable in interface uk.ac.bbk.dcs.automed.qproc.annotate.grammars.schemes.SchemesConstants
 
DEFAULT - Static variable in interface uk.ac.bbk.dcs.automed.qproc.annotate.grammars.simpleComp.SimpleCompConstants
 
DEFAULT - Static variable in interface uk.ac.bbk.dcs.automed.qproc.annotate.grammars.simpleCompAppend.SimpleCompAppendConstants
 
DEFAULT - Static variable in interface uk.ac.bbk.dcs.automed.qproc.annotate.grammars.simpleCompAppendMonus.SimpleCompAppendMonusConstants
 
DEFAULT - Static variable in interface uk.ac.bbk.dcs.automed.qproc.translators.xquery.XQuery2IQLConstants
 
default_datasource_color - Static variable in class uk.ac.ic.doc.automed.reps.Schema
Default Color to use when creating a new data source schema
default_extensional_database_color - Static variable in class uk.ac.ic.doc.automed.reps.Schema
Default Color to use when creating a new extensional database
default_extensional_schema_color - Static variable in class uk.ac.ic.doc.automed.reps.Schema
Default Color to use when creating a new extensional schema
DEFAULT_INDENT - Static variable in class uk.ac.ic.doc.automed.reps.Network
 
DefaultCachePolicy - Class in uk.ac.ic.doc.automed.qproc.cache
CachePolicy.java Prefer the cache
DefaultCachePolicy() - Constructor for class uk.ac.ic.doc.automed.qproc.cache.DefaultCachePolicy
Creates a new instance of CachePolicy
DefaultDrawConstraintArc - Class in uk.ac.ic.doc.automed.editor
 
DefaultDrawConstraintArc(EditorPanel, Positionable, Positionable[]) - Constructor for class uk.ac.ic.doc.automed.editor.DefaultDrawConstraintArc
 
DefaultDrawConstraintVertex - Class in uk.ac.ic.doc.automed.editor
 
DefaultDrawConstraintVertex(EditorPanel, Positionable) - Constructor for class uk.ac.ic.doc.automed.editor.DefaultDrawConstraintVertex
 
DefaultDrawConstraintVertex(EditorPanel, Positionable, Positionable[]) - Constructor for class uk.ac.ic.doc.automed.editor.DefaultDrawConstraintVertex
 
DefaultDrawLinkArc - Class in uk.ac.ic.doc.automed.editor
 
DefaultDrawLinkArc(EditorPanel, Positionable, Positionable[]) - Constructor for class uk.ac.ic.doc.automed.editor.DefaultDrawLinkArc
 
DefaultDrawLinkNodalArc - Class in uk.ac.ic.doc.automed.editor
 
DefaultDrawLinkNodalArc(EditorPanel, Positionable, Positionable[]) - Constructor for class uk.ac.ic.doc.automed.editor.DefaultDrawLinkNodalArc
 
DefaultDrawLinkNodalVertex - Class in uk.ac.ic.doc.automed.editor
 
DefaultDrawLinkNodalVertex(EditorPanel, Positionable, Positionable[]) - Constructor for class uk.ac.ic.doc.automed.editor.DefaultDrawLinkNodalVertex
 
DefaultDrawLinkVertex - Class in uk.ac.ic.doc.automed.editor
 
DefaultDrawLinkVertex(EditorPanel, Positionable) - Constructor for class uk.ac.ic.doc.automed.editor.DefaultDrawLinkVertex
 
DefaultDrawLinkVertex(EditorPanel, Positionable, Positionable[]) - Constructor for class uk.ac.ic.doc.automed.editor.DefaultDrawLinkVertex
 
DefaultDrawNodalVertex - Class in uk.ac.ic.doc.automed.editor
 
DefaultDrawNodalVertex() - Constructor for class uk.ac.ic.doc.automed.editor.DefaultDrawNodalVertex
 
DefaultDrawNodalVertex(EditorPanel, Positionable) - Constructor for class uk.ac.ic.doc.automed.editor.DefaultDrawNodalVertex
 
DefaultPathwayFinder - Class in uk.ac.ic.doc.automed.reps.pathway
DefaultPathwayFinder.java Implement the default method for finding pathways
DefaultPathwayFinder() - Constructor for class uk.ac.ic.doc.automed.reps.pathway.DefaultPathwayFinder
Creates a new instance of DefaultPathwayFinder
DefaultQueryCache - Class in uk.ac.ic.doc.automed.qproc.cache
 
DefaultQueryCache(long) - Constructor for class uk.ac.ic.doc.automed.qproc.cache.DefaultQueryCache
Creates a new instance of DefaultQueryCache (singleton)
DEFINITIVE - Static variable in interface uk.ac.ic.doc.automed.xml.XMLifyConstants
 
DEFINITIVE_CHILDREN - Static variable in interface uk.ac.ic.doc.automed.xml.XMLifyConstants
 
DEFINITIVE_CHILDREN_RECURSE - Static variable in interface uk.ac.ic.doc.automed.xml.XMLifyConstants
 
DEFINITIVE_MEMBER - Static variable in interface uk.ac.ic.doc.automed.xml.XMLifyConstants
 
DEFINITIVE_MEMBER_AND_CHILDREN - Static variable in interface uk.ac.ic.doc.automed.xml.XMLifyConstants
 
DEFINITIVE_MEMBER_RECURSE - Static variable in interface uk.ac.ic.doc.automed.xml.XMLifyConstants
 
DegreeCombinator - Class in uk.ac.ic.doc.automed.matching
The class that represents the Degree Combinator component in the schema matching architecture.
DegreeCombinator(SimilarSchemaElementPair[]) - Constructor for class uk.ac.ic.doc.automed.matching.DegreeCombinator
Constructs the DegreeCombinator for the specified aggregated pairs of elements.
DELETE - Static variable in exception uk.ac.ic.doc.automed.IntegrityException
Exception caused by an operation doing some sort of deletion from the repository.
delete - Static variable in class uk.ac.ic.doc.automed.reps.Syntax.Token
 
deleted() - Method in class uk.ac.ic.doc.automed.reps.Network
Return true when the Network class is finished with, after all Schemas have been deleted from it
deleteEdge(String, String) - Method in class uk.ac.bbk.dcs.automed.hdmstore.HdmStore
Check the node type is valid & and instance of the node with this value exists.
deleteIQL(ASG) - Method in class uk.ac.bbk.dcs.automed.hdmstore.HdmWrapper
Take the query and attempt to insert each of the values in the list into the database.
deleteIQL(ASG) - Method in class uk.ac.ic.doc.automed.wrappers.AutoMedWrapper
 
deleteNode(String, String) - Method in class uk.ac.bbk.dcs.automed.hdmstore.HdmStore
Check the node type is valid & and instance of the node with this value exists.
deleteOldPathway(Schema, Schema) - Method in class uk.ac.bbk.dcs.automed.evolution.schemaModelEvolution.ExtensionalSchemaEvolution
 
deleteOldSchema(String) - Static method in class uk.ac.bbk.dcs.automed.xml.experiments.ExperimentsUtility
 
deleteOldSchema(PrintStream, String) - Static method in class uk.ac.bbk.dcs.automed.xml.experiments.ExperimentsUtility
 
DemoDLT - Class in uk.ac.bbk.dcs.automed.dataWarehousing.dlt
 
DemoDLT() - Constructor for class uk.ac.bbk.dcs.automed.dataWarehousing.dlt.DemoDLT
 
dependent - Variable in class uk.ac.ic.doc.automed.editor.DrawVertex
 
deriveVarToConstructMapping(String) - Method in class uk.ac.bbk.dcs.automed.xml.wrappers.IQL2XQuery
 
description - Variable in class uk.ac.ic.doc.automed.p2p.directory.ModelDescription
 
description - Variable in class uk.ac.ic.doc.automed.p2p.directory.SchemaDescription
 
DESCRIPTION - Static variable in class uk.ac.ic.doc.automed.p2p.protocol.P2PConstants
 
deserialise(Map) - Static method in class uk.ac.ic.doc.automed.p2p.PathwayDescription
This method guarantees that a PersistentObject can be deserialised properly from its own set of persistent attributes.
deserialise() - Method in class uk.ac.ic.doc.automed.qproc.cache.DefaultQueryCache
Read content from disk (file or database)
deserialise(Map) - Static method in class uk.ac.ic.doc.automed.reps.DataSource
This method guarantees that a PersistentObject can be deserialised properly from its own set of persistent attributes.
deserialise(Map) - Static method in class uk.ac.ic.doc.automed.reps.TransformationAbstraction
This method guarantees that a PersistentObject can be deserialised properly from its own set of persistent attributes.
deserialise() - Method in interface uk.ac.ic.doc.automed.util.persist.Persistence
Read content from disk (file or database)
deserialise(Map) - Static method in class uk.ac.ic.doc.rodex.qproc.QualityIndicator
This method guarantees that a PersistentObject can be deserialised properly from its own set of persistent attributes.
deserialise(Map) - Static method in class uk.ac.ic.doc.rodex.qproc.QueryDescription
This method guarantees that a PersistentObject can be deserialised properly from its own set of persistent attributes.
deserialise(Map) - Static method in class uk.ac.ic.doc.rodex.reps.AttributeDomain
This method guarantees that a PersistentObject can be deserialised properly from its own set of persistent attributes.
deserialiseASG(Root) - Static method in class uk.ac.ic.doc.rodex.p2p.protocol.QEP
Deserialise an ASG from its XML representation
DetachedTextEditor - Class in uk.ac.ic.doc.automed.editor
Another editor class for displaying table's cell value.
DetachedTextEditor(JFrame) - Constructor for class uk.ac.ic.doc.automed.editor.DetachedTextEditor
 
Difference - Class in uk.ac.bbk.dcs.automed.qproc.functions.collections
 
Difference() - Constructor for class uk.ac.bbk.dcs.automed.qproc.functions.collections.Difference
 
differenceByName(Schema) - Method in class uk.ac.ic.doc.automed.reps.Schema
Return an SchemaObject array containing the difference by name between this schema (s1) and the schema passed as a parameter (s2).
DirectedGraph - Class in uk.ac.bbk.dcs.automed.graph
Class that abstracts a directed unlabelled graph.
DirectedGraph() - Constructor for class uk.ac.bbk.dcs.automed.graph.DirectedGraph
 
DirectedGraphNode - Class in uk.ac.bbk.dcs.automed.graph
Class that abstracts a node in a directed unlabelled graph.
DirectedGraphNode(String) - Constructor for class uk.ac.bbk.dcs.automed.graph.DirectedGraphNode
 
DIRECTORY_SERVER_CFG_FILE - Static variable in class uk.ac.ic.doc.automed.p2p.protocol.P2PConstants
 
DirectoryServicePeer - Class in uk.ac.ic.doc.rodex.p2p
DirectoryServicePeer.java

Represents directory service peer on the network.
DirectoryServicePeer(String, PeerStateHandler) - Constructor for class uk.ac.ic.doc.rodex.p2p.DirectoryServicePeer
Creates a new instance of DirectoryServicePeer
disable_tracing() - Method in class uk.ac.bbk.dcs.automed.qproc.annotate.grammars.schemes.Schemes
 
disable_tracing() - Method in class uk.ac.bbk.dcs.automed.qproc.annotate.grammars.simpleComp.SimpleComp
 
disable_tracing() - Method in class uk.ac.bbk.dcs.automed.qproc.annotate.grammars.simpleCompAppend.SimpleCompAppend
 
disable_tracing() - Method in class uk.ac.bbk.dcs.automed.qproc.annotate.grammars.simpleCompAppendMonus.SimpleCompAppendMonus
 
disable_tracing() - Method in class uk.ac.bbk.dcs.automed.qproc.translators.xquery.XQuery2IQL
 
discoverRelationships() - Method in class uk.ac.ic.doc.automed.editor.MatchingTool
 
Disjointness - Class in uk.ac.ic.doc.automed.matching.relationships
The Disjointness class represent the disjointness semantic relationship between SchemaElement objects.
disjoints - Variable in class uk.ac.ic.doc.automed.matching.Integrator
 
dispatchCommand(String[]) - Static method in class uk.ac.ic.doc.automed.DSR
Invokes the method registered for the command args[0] with #addCommand(String, Class).
dispatchCommand(String) - Method in class uk.ac.ic.doc.automed.editor.CommandLineDriver
 
display(LinkedList) - Static method in class uk.ac.bbk.dcs.automed.hdmstore.EdgeElement
Pretty print an edge
display() - Method in class uk.ac.bbk.dcs.automed.hdmstore.Span
return the node value using the HDM notation
display(JTable, int, int) - Method in class uk.ac.ic.doc.automed.editor.DetachedTextEditor
show this text editor
display() - Method in class uk.ac.ic.doc.automed.editor.GUITool
 
display() - Method in class uk.ac.ic.doc.rodex.p2p.gui.CacheViewerFrame
display the frame
displayASG(String) - Static method in class uk.ac.ic.doc.rodex.qproc.ASGExplore
For each ASG string, display the ASG graph of it
displaySet(Set) - Static method in class uk.ac.bbk.dcs.automed.evolution.EvolutionUtility
 
displayTransformation(Transformation) - Static method in class uk.ac.bbk.dcs.automed.evolution.EvolutionUtility
 
displayTransformation(Transformation) - Static method in class uk.ac.bbk.dcs.automed.evolution2.EvolutionUtility
 
Div - Class in uk.ac.bbk.dcs.automed.qproc.functions.arithmetic
 
Div() - Constructor for class uk.ac.bbk.dcs.automed.qproc.functions.arithmetic.Div
 
Divide - Class in uk.ac.bbk.dcs.automed.qproc.functions.arithmetic
 
Divide() - Constructor for class uk.ac.bbk.dcs.automed.qproc.functions.arithmetic.Divide
 
DIVIDE - Static variable in interface uk.ac.bbk.dcs.automed.qproc.translators.xquery.XQuery2IQLConstants
 
divide(BidirectionalDegree) - Method in class uk.ac.ic.doc.automed.matching.BidirectionalDegree
Divides the specified bidirectional degree from the current degree.
divide(AutoMedFloat) - Method in class uk.ac.ic.doc.automed.wrappers.AutoMedFloat
Return the division of two AutoMedFloats.
divide(AutoMedInteger) - Method in class uk.ac.ic.doc.automed.wrappers.AutoMedInteger
Return the division of two AutoMedIntegers.
dltInterface - Class in uk.ac.bbk.dcs.automed.dataWarehousing
 
dltInterface() - Constructor for class uk.ac.bbk.dcs.automed.dataWarehousing.dltInterface
This is the default constructor
do_action(int, lr_parser, Stack, int) - Method in class uk.ac.bbk.dcs.automed.qproc.iql.EnvParser
Invoke a user supplied parse action.
do_action(int, lr_parser, Stack, int) - Method in class uk.ac.bbk.dcs.automed.qproc.iql.QParser
Invoke a user supplied parse action.
DO_NOT_USE_CACHE - Static variable in interface uk.ac.ic.doc.automed.qproc.cache.CachePolicy
 
doCreateCommand(String[]) - Static method in class uk.ac.ic.doc.automed.DSR
 
doCreatedbCommand(String[]) - Static method in class uk.ac.ic.doc.automed.DSR
Reads the property CreateDB property for the data source and executes the value as an update on the databse connection
DOCTOKEN - Static variable in interface uk.ac.bbk.dcs.automed.qproc.translators.xquery.XQuery2IQLConstants
 
Document - Class in uk.ac.ic.doc.automed.wrappers.xsdomobject
Define the internal representation for an XMLSchema document
Document(Element) - Constructor for class uk.ac.ic.doc.automed.wrappers.xsdomobject.Document
Creates a new instance of Document with root as the root element
Document(Element, ArrayList) - Constructor for class uk.ac.ic.doc.automed.wrappers.xsdomobject.Document
A new document with one or more types defined at the root level
documentToString(Document) - Static method in class uk.ac.bbk.dcs.automed.xml.utilities.PrintUtility
Returns the String representation of document d.
doCustomRequest(String, String, String, int, int, boolean) - Method in class uk.ac.ic.doc.automed.p2p.AutoMedMessagingHelper
Create a custom keep-alive messaging helper for an AutoMedPeer.
doDefaultCommand(String[]) - Static method in class uk.ac.ic.doc.automed.DSR
 
doDisplayCommand(String[]) - Static method in class uk.ac.ic.doc.automed.DSR
 
doDropdbCommand(String[]) - Static method in class uk.ac.ic.doc.automed.DSR
 
DOES_NOT_APPEAR_AND_CANNOT_BE_DERIVED - Static variable in class uk.ac.bbk.dcs.automed.evolution2.ExtendedConstruct
 
DOES_NOT_APPEAR_BUT_CAN_BE_DERIVED - Static variable in class uk.ac.bbk.dcs.automed.evolution2.ExtendedConstruct
 
doExitCommand(String[]) - Method in class uk.ac.ic.doc.automed.editor.CommandLineDriver
 
doGetCommand(String[]) - Static method in class uk.ac.ic.doc.automed.DSR
 
doGetModelsCommand(String[]) - Method in class uk.ac.ic.doc.automed.editor.Editor
 
doGetNetworkCommand(String[]) - Method in class uk.ac.ic.doc.automed.editor.Editor
 
doGetNetworkNamesCommand(String[]) - Method in class uk.ac.ic.doc.automed.editor.Editor
 
doGetNetworksCommand(String[]) - Method in class uk.ac.ic.doc.automed.editor.Editor
 
doGetSchemaNetworkCommand(String[]) - Method in class uk.ac.ic.doc.automed.editor.Editor
 
doHelpCommand(String[]) - Static method in class uk.ac.ic.doc.automed.DSR
 
doHelpCommand(String[]) - Method in class uk.ac.ic.doc.automed.editor.CommandLineDriver
 
doIsCommand(String[]) - Static method in class uk.ac.ic.doc.automed.DSR
 
doLayout() - Method in class uk.ac.ic.doc.automed.editor.autolayout.AutoLayoutERObject
 
doLayout() - Method in class uk.ac.ic.doc.automed.editor.autolayout.AutoLayoutPositionable
Perform layout process on whole graph starting from this object.
doLayout() - Method in class uk.ac.ic.doc.automed.editor.autolayout.AutoLayoutSpringObject
Perform layout process on whole graph starting from this object.
doLayoutER(Object[]) - Static method in class uk.ac.ic.doc.automed.editor.autolayout.AutoLayoutERObject
 
doLayoutSpring(Object[]) - Static method in class uk.ac.ic.doc.automed.editor.autolayout.AutoLayout
 
doLayoutXML(Object[]) - Static method in class uk.ac.ic.doc.automed.editor.autolayout.AutoLayout
 
doListSchemaCommand(String[]) - Method in class uk.ac.ic.doc.automed.editor.Editor
 
DOMAIN - Static variable in class uk.ac.ic.doc.automed.p2p.protocol.P2PConstants
 
domain - Variable in class uk.ac.ic.doc.rodex.p2p.messages.applicationlayer.HelloMsg
 
domDriver - Static variable in class uk.ac.bbk.dcs.automed.rdfs.RDFSConstants
 
DOMMaterialiser - Class in uk.ac.bbk.dcs.automed.xml.materialisation
TODO: investigate what happens to text in mixed elements TODO: is it possible to make class work without UIDs? TODO: make generic root creation optional and use superclass's switch.
DOMMaterialiser(Schema, Schema[], String, String, QueryProcessorConfiguration) - Constructor for class uk.ac.bbk.dcs.automed.xml.materialisation.DOMMaterialiser
 
DOMWrapper - Class in uk.ac.bbk.dcs.automed.xml.wrappers
A lower level wrapper that conforms to the XMLWrapper class.
DOMWrapper(AccessMethod, String) - Constructor for class uk.ac.bbk.dcs.automed.xml.wrappers.DOMWrapper
 
DOMWrapperFactory - Class in uk.ac.bbk.dcs.automed.xml.wrappers
 
DOMWrapperFactory() - Constructor for class uk.ac.bbk.dcs.automed.xml.wrappers.DOMWrapperFactory
 
doMyGraphLayout() - Method in class uk.ac.ic.doc.automed.editor.autolayout.AutoLayout
 
Done() - Method in class uk.ac.bbk.dcs.automed.qproc.annotate.grammars.schemes.SimpleCharStream
 
Done() - Method in class uk.ac.bbk.dcs.automed.qproc.annotate.grammars.simpleComp.SimpleCharStream
 
Done() - Method in class uk.ac.bbk.dcs.automed.qproc.annotate.grammars.simpleCompAppend.SimpleCharStream
 
Done() - Method in class uk.ac.bbk.dcs.automed.qproc.annotate.grammars.simpleCompAppendMonus.SimpleCharStream
 
Done() - Method in class uk.ac.bbk.dcs.automed.qproc.translators.xquery.SimpleCharStream
 
doPopulatedbCommand(String[]) - Static method in class uk.ac.ic.doc.automed.DSR
 
doPrintCommand(String[]) - Static method in class uk.ac.ic.doc.automed.DSR
 
doPrintNetworkCommand(String[]) - Method in class uk.ac.ic.doc.automed.editor.Editor
 
doQuitCommand(String[]) - Method in class uk.ac.ic.doc.automed.editor.CommandLineDriver
 
doReloadCommand(String[]) - Static method in class uk.ac.ic.doc.automed.DSR
 
doRemoveCommand(String[]) - Static method in class uk.ac.ic.doc.automed.DSR
 
doRequest(String, String, AbstractMessage, String, String, int, RequestListener, int, boolean, boolean, boolean) - Static method in class uk.ac.ic.doc.automed.p2p.AutoMedMessagingHelper
Perform a network request on behalf of the client.
doRequest(String) - Method in class uk.ac.ic.doc.automed.p2p.AutoMedMessagingHelper
Utility method for performing specific P2P requests
See Constants for a list of OPT_* request types
doSetCommand(String[]) - Static method in class uk.ac.ic.doc.automed.DSR
 
doSimpleAnonymousRequest(AbstractMessage, AutoMedPeer.PeerProcessDescription) - Method in class uk.ac.ic.doc.automed.p2p.AutoMedMessagingHelper
Overloading method that accepts a PeerDescription object and finds the destination port of this peer
doSimpleAnonymousRequest(AbstractMessage, String, int) - Method in class uk.ac.ic.doc.automed.p2p.AutoMedMessagingHelper
This overiding method works the same as {@link doSimpleAnonymousRequest( AbstractMessage requestMessage, String protocol, String remoteAddress, int remotePort) in that it uses the default protocol in the peer's configuration file
doSimpleAnonymousRequest(AbstractMessage, String, String, int) - Method in class uk.ac.ic.doc.automed.p2p.AutoMedMessagingHelper
This overiding method is used for executing switched, synchronousrequests
that expects a response.
doSimpleRequest(AbstractMessage, String, String, int, RequestListener, boolean) - Method in class uk.ac.ic.doc.automed.p2p.AutoMedMessagingHelper
This overiding method is used for executing switched, synchronous/asynchronousrequests that expects a response
.
doSimpleRequest(AbstractMessage, String, String, int, boolean) - Method in class uk.ac.ic.doc.automed.p2p.AutoMedMessagingHelper
This overiding method is used for executing switched, synchronous/asynchronousrequests
that does NOT expect a response
.
doSimpleRequest(String, AbstractMessage, String, String, int, boolean, boolean) - Static method in class uk.ac.ic.doc.automed.p2p.AutoMedMessagingHelper
This overiding method is used for executing switched, synchronous/asynchronousrequests
that does NOT expect a response
.
Dot - Static variable in class uk.ac.bbk.dcs.automed.qproc.iql.FSym
 
DotExtensionFileFilter - Class in uk.ac.ic.doc.automed.editor
 
DotExtensionFileFilter(String, String[]) - Constructor for class uk.ac.ic.doc.automed.editor.DotExtensionFileFilter
Create a FileFilter that selects only files with certain 'dot' extentions.
DOUBLE_TOKEN - Static variable in class uk.ac.ic.doc.automed.wrappers.AutoMedQuery
 
doubleValue() - Method in class uk.ac.ic.doc.automed.wrappers.AutoMedBoolean
Return a double representation of this AutoMedBoolean, where true is 1.0 and false 0.0
doubleValue() - Method in class uk.ac.ic.doc.automed.wrappers.AutoMedFloat
Return the value of this AutoMedFloat as an double
doubleValue() - Method in class uk.ac.ic.doc.automed.wrappers.AutoMedInteger
Return the value of this AutoMedInteger as a double
doubleValue() - Method in class uk.ac.ic.doc.automed.wrappers.AutoMedString
 
doubleValue() - Method in class uk.ac.ic.doc.automed.wrappers.AutoMedTime
Return the number of milliseconds since 1970 as a double
doubleValue() - Method in class uk.ac.ic.doc.automed.wrappers.AutoMedTuple
Return the arity (size) of the tuple as a double.
doubleValue() - Method in class uk.ac.ic.doc.automed.wrappers.AutoMedType
Return the double representation of this AutoMedType.
DPoint - Class in uk.ac.ic.doc.automed.editor.autolayout
A class for holding a real position points.
DPoint(double, double) - Constructor for class uk.ac.ic.doc.automed.editor.autolayout.DPoint
 
DPoint() - Constructor for class uk.ac.ic.doc.automed.editor.autolayout.DPoint
 
DPoint(DPoint) - Constructor for class uk.ac.ic.doc.automed.editor.autolayout.DPoint
 
dragDropEnd(DragSourceDropEvent) - Method in class uk.ac.ic.doc.automed.xmlschema.tree.TreeDragSource
 
dragEnter(DragSourceDragEvent) - Method in class uk.ac.ic.doc.automed.xmlschema.tree.TreeDragSource
 
dragEnter(DropTargetDragEvent) - Method in class uk.ac.ic.doc.automed.xmlschema.tree.TreeDropTarget
 
dragExit(DragSourceEvent) - Method in class uk.ac.ic.doc.automed.xmlschema.tree.TreeDragSource
 
dragExit(DropTargetEvent) - Method in class uk.ac.ic.doc.automed.xmlschema.tree.TreeDropTarget
 
dragGestureRecognized(DragGestureEvent) - Method in class uk.ac.ic.doc.automed.xmlschema.tree.TreeDragSource
 
dragOver(DragSourceDragEvent) - Method in class uk.ac.ic.doc.automed.xmlschema.tree.TreeDragSource
 
dragOver(DropTargetDragEvent) - Method in class uk.ac.ic.doc.automed.xmlschema.tree.TreeDropTarget
 
Drawable - Interface in uk.ac.ic.doc.automed.editor
 
DrawableArc - Interface in uk.ac.ic.doc.automed.editor
 
DrawableVertex - Interface in uk.ac.ic.doc.automed.editor
 
DrawAMRDBForeignKeyArc - Class in uk.ac.ic.doc.automed.editor.drawables
 
DrawAMRDBForeignKeyArc(EditorPanel, Positionable, Positionable[]) - Constructor for class uk.ac.ic.doc.automed.editor.drawables.DrawAMRDBForeignKeyArc
 
DrawAMRDBPrimaryKeyArc - Class in uk.ac.ic.doc.automed.editor.drawables
 
DrawAMRDBPrimaryKeyArc(EditorPanel, Positionable, Positionable[]) - Constructor for class uk.ac.ic.doc.automed.editor.drawables.DrawAMRDBPrimaryKeyArc
 
DrawArc - Class in uk.ac.ic.doc.automed.editor
 
DrawArc(EditorPanel, Positionable, Positionable[]) - Constructor for class uk.ac.ic.doc.automed.editor.DrawArc
Pass in the array of objects that this connects together.
DrawArc(EditorPanel, Positionable[]) - Constructor for class uk.ac.ic.doc.automed.editor.DrawArc
Pass in the array of objects that this connects together.
drawArrow(Graphics2D, int, int, int, int, int) - Static method in class uk.ac.ic.doc.automed.editor.drawables.DrawUMLGeneralisationArc
Draw the closed but unfilled arrow of a UML generalisation/inheritance construct
drawArrow(Graphics2D, int, int, int, int, int) - Static method in class uk.ac.ic.doc.automed.editor.DrawArc
 
drawDiamond(Graphics2D, int, int, int, int) - Static method in class uk.ac.ic.doc.automed.editor.DefaultDrawLinkVertex
 
DrawEERAttributeVertex - Class in uk.ac.ic.doc.automed.editor.drawables
 
DrawEERAttributeVertex(EditorPanel, Positionable, Positionable[]) - Constructor for class uk.ac.ic.doc.automed.editor.drawables.DrawEERAttributeVertex
 
DrawEERRelationshipArc - Class in uk.ac.ic.doc.automed.editor.drawables
 
DrawEERRelationshipArc(EditorPanel, Positionable, Positionable[]) - Constructor for class uk.ac.ic.doc.automed.editor.drawables.DrawEERRelationshipArc
 
DrawERGeneralisationArc - Class in uk.ac.ic.doc.automed.editor.drawables
 
DrawERGeneralisationArc(EditorPanel, Positionable, Positionable[]) - Constructor for class uk.ac.ic.doc.automed.editor.drawables.DrawERGeneralisationArc
 
DrawERGeneralisationVertex - Class in uk.ac.ic.doc.automed.editor.drawables
 
DrawERGeneralisationVertex(EditorPanel, Positionable, Positionable[]) - Constructor for class uk.ac.ic.doc.automed.editor.drawables.DrawERGeneralisationVertex
 
DrawERRelationshipArc - Class in uk.ac.ic.doc.automed.editor.drawables
 
DrawERRelationshipArc(EditorPanel, Positionable, Positionable[]) - Constructor for class uk.ac.ic.doc.automed.editor.drawables.DrawERRelationshipArc
 
DrawERRelationshipVertex - Class in uk.ac.ic.doc.automed.editor.drawables
 
DrawERRelationshipVertex(EditorPanel, Positionable) - Constructor for class uk.ac.ic.doc.automed.editor.drawables.DrawERRelationshipVertex
 
DrawHDMArc - Class in uk.ac.ic.doc.automed.editor.drawables
 
DrawHDMArc(EditorPanel, Positionable, Positionable[]) - Constructor for class uk.ac.ic.doc.automed.editor.drawables.DrawHDMArc
 
DrawHDMVertex - Class in uk.ac.ic.doc.automed.editor.drawables
 
DrawHDMVertex(EditorPanel, Positionable, Positionable[]) - Constructor for class uk.ac.ic.doc.automed.editor.drawables.DrawHDMVertex
 
drawMap(String[][]) - Static method in class uk.ac.ic.doc.automed.reps.SchemaMapGenerator
 
drawMap(String[][], boolean) - Static method in class uk.ac.ic.doc.automed.reps.SchemaMapGenerator
 
DrawNetwork - Class in uk.ac.ic.doc.automed.editor
Draw a symbol the represents a Network in an AutoMed EditorPanel.
DrawNetwork(EditorPanel, Positionable) - Constructor for class uk.ac.ic.doc.automed.editor.DrawNetwork
 
DrawRDBForeignKeyArc - Class in uk.ac.ic.doc.automed.editor.drawables
 
DrawRDBForeignKeyArc(EditorPanel, Positionable, Positionable[]) - Constructor for class uk.ac.ic.doc.automed.editor.drawables.DrawRDBForeignKeyArc
 
DrawRDBForeignKeyVertex - Class in uk.ac.ic.doc.automed.editor.drawables
 
DrawRDBForeignKeyVertex(EditorPanel, Positionable, Positionable[]) - Constructor for class uk.ac.ic.doc.automed.editor.drawables.DrawRDBForeignKeyVertex
 
DrawRDBPrimaryKeyArc - Class in uk.ac.ic.doc.automed.editor.drawables
 
DrawRDBPrimaryKeyArc(EditorPanel, Positionable, Positionable[]) - Constructor for class uk.ac.ic.doc.automed.editor.drawables.DrawRDBPrimaryKeyArc
 
DrawRDBPrimaryKeyVertex - Class in uk.ac.ic.doc.automed.editor.drawables
 
DrawRDBPrimaryKeyVertex(EditorPanel, Positionable, Positionable[]) - Constructor for class uk.ac.ic.doc.automed.editor.drawables.DrawRDBPrimaryKeyVertex
 
DrawRDBTableVertex - Class in uk.ac.ic.doc.automed.editor.drawables
 
DrawRDBTableVertex(EditorPanel, Positionable) - Constructor for class uk.ac.ic.doc.automed.editor.drawables.DrawRDBTableVertex
 
DrawSchema - Class in uk.ac.ic.doc.automed.editor
Draw a symbol the represents a Schema in an AutoMed EditorPanel.
DrawSchema(EditorPanel, Positionable) - Constructor for class uk.ac.ic.doc.automed.editor.DrawSchema
 
DrawTransformation - Class in uk.ac.ic.doc.automed.editor
Draw a symbol the represents a Transformation in an AutoMed EditorPanel.
DrawTransformation(EditorPanel, Positionable[]) - Constructor for class uk.ac.ic.doc.automed.editor.DrawTransformation
 
drawTree() - Method in class uk.ac.bbk.dcs.automed.xml.xmldssGraph.XMLDSSGraph
 
DrawUMLAssociationArc - Class in uk.ac.ic.doc.automed.editor.drawables
 
DrawUMLAssociationArc(EditorPanel, Positionable, Positionable[]) - Constructor for class uk.ac.ic.doc.automed.editor.drawables.DrawUMLAssociationArc
 
DrawUMLAssociationVertex - Class in uk.ac.ic.doc.automed.editor.drawables
This does nothing as a UML association is only a line between classes, no vertex should be drawn
DrawUMLAssociationVertex(EditorPanel, Positionable, Positionable[]) - Constructor for class uk.ac.ic.doc.automed.editor.drawables.DrawUMLAssociationVertex
Set the symbolHeight and width to 0 so nothing is drawn
DrawUMLAttributeArc - Class in uk.ac.ic.doc.automed.editor.drawables
 
DrawUMLAttributeArc(EditorPanel, Positionable, Positionable[]) - Constructor for class uk.ac.ic.doc.automed.editor.drawables.DrawUMLAttributeArc
 
DrawUMLAttributeVertex - Class in uk.ac.ic.doc.automed.editor.drawables
 
DrawUMLAttributeVertex(EditorPanel, Positionable, Positionable[]) - Constructor for class uk.ac.ic.doc.automed.editor.drawables.DrawUMLAttributeVertex
 
DrawUMLClassVertex - Class in uk.ac.ic.doc.automed.editor.drawables
 
DrawUMLClassVertex(EditorPanel, Positionable) - Constructor for class uk.ac.ic.doc.automed.editor.drawables.DrawUMLClassVertex
 
DrawUMLGeneralisationArc - Class in uk.ac.ic.doc.automed.editor.drawables
Class to draw a UML generalisation arc This draws a line with an arrow on the end from each subclass to the superclass
DrawUMLGeneralisationArc(EditorPanel, Positionable, Positionable[]) - Constructor for class uk.ac.ic.doc.automed.editor.drawables.DrawUMLGeneralisationArc
 
DrawUMLGeneralisationVertex - Class in uk.ac.ic.doc.automed.editor.drawables
 
DrawUMLGeneralisationVertex(EditorPanel, Positionable, Positionable[]) - Constructor for class uk.ac.ic.doc.automed.editor.drawables.DrawUMLGeneralisationVertex
 
DrawVertex - Class in uk.ac.ic.doc.automed.editor
The default implementation of DrawableVertex that the editor will use to draw any vertex it does not know (or has been told) to draw otherwise.
DrawVertex() - Constructor for class uk.ac.ic.doc.automed.editor.DrawVertex
The default, no parameters, constructor
DrawVertex(EditorPanel, Positionable, Positionable[]) - Constructor for class uk.ac.ic.doc.automed.editor.DrawVertex
The standard constructor used by link and link nodal constructs since they have dependents
DrawVertex(EditorPanel, Positionable) - Constructor for class uk.ac.ic.doc.automed.editor.DrawVertex
Constructor called by nodal constructs that have no dependents
DrawXSArc - Class in uk.ac.ic.doc.automed.editor.drawables
 
DrawXSArc(EditorPanel, Positionable, Positionable[]) - Constructor for class uk.ac.ic.doc.automed.editor.drawables.DrawXSArc
 
driver - Variable in class uk.ac.ic.doc.automed.wrappers.AutoMedWrapper
 
DRIVER_HSQLDB - Static variable in class uk.ac.ic.doc.automed.util.db.DBAccessFactory
Hypersonic SQL database driver
DRIVER_MSSQL - Static variable in class uk.ac.ic.doc.automed.util.db.DBAccessFactory
Misrosoft SQL Server database driver
DRIVER_MYSQL - Static variable in class uk.ac.ic.doc.automed.util.db.DBAccessFactory
MySQL Server database driver
DRIVER_ORACLE - Static variable in class uk.ac.ic.doc.automed.util.db.DBAccessFactory
Oracle Server database driver
DRIVER_POSTGRES - Static variable in class uk.ac.ic.doc.automed.util.db.DBAccessFactory
Postgres database driver
driverDOM - Static variable in class uk.ac.bbk.dcs.automed.xml.XMLConstants
 
driverEXIST_SOAP - Static variable in class uk.ac.bbk.dcs.automed.xml.XMLConstants
 
driverEXIST_XMLDB - Static variable in class uk.ac.bbk.dcs.automed.xml.XMLConstants
 
driverSAX - Static variable in class uk.ac.bbk.dcs.automed.xml.XMLConstants
 
driverString - Static variable in class uk.ac.ic.doc.automed.wrappers.CSVWrapper
 
driverString - Static variable in class uk.ac.ic.doc.automed.wrappers.UMLWrapper
 
driverString - Static variable in class uk.ac.ic.doc.automed.wrappers.XMLSchemaWrapper
 
drop(DropTargetDropEvent) - Method in class uk.ac.ic.doc.automed.xmlschema.tree.TreeDropTarget
 
dropActionChanged(DragSourceDragEvent) - Method in class uk.ac.ic.doc.automed.xmlschema.tree.TreeDragSource
 
dropActionChanged(DropTargetDragEvent) - Method in class uk.ac.ic.doc.automed.xmlschema.tree.TreeDropTarget
 
dropSchemas(Pathway) - Static method in class uk.ac.bbk.dcs.automed.evolution.EvolutionUtility
Retracts schemas in the pathway from s1 to s2, WITHOUT retracting s2.
dropSchemas(Pathway) - Static method in class uk.ac.bbk.dcs.automed.evolution1.Evolution
Retracts schemas in the pathway from s1 to s2, WITHOUT retracting s2.
dropSchemas(Pathway) - Static method in class uk.ac.bbk.dcs.automed.evolution2.EvolutionUtility
Retracts schemas in the pathway from s1 to s2, WITHOUT retracting s2.
dropSchemas(Pathway) - Static method in class uk.ac.bbk.dcs.automed.evolution2.schemaEvolution.SchemaEvolution
Retracts schemas in the pathway from s1 to s2, WITHOUT retracting s2.
dropSequence() - Method in class uk.ac.bbk.dcs.automed.hdmstore.HdmStore
Older versions of Postgres do not automatically drop sequences created for primary keys etc when the table is dropped - this loops through dropping the sequences explicitly.
dropTable(String) - Method in class uk.ac.ic.doc.automed.tests.p2p.TestDBProcess
 
DS_REPS_CFG_FILE_PREFIX - Static variable in class uk.ac.ic.doc.automed.p2p.AppToolKit
 
dsEnd - Variable in class uk.ac.bbk.dcs.automed.qproc.functions.internal.CallToWrapper
 
DSR - Class in uk.ac.ic.doc.automed
Reads data source definitions from a configuration file and provides methods to get a Connection for a data souce.
DSRConfiguration - Class in uk.ac.ic.doc.automed
Basic ability to configure the DSR, and to support the use of multiple DSRs.
DSRConfiguration() - Constructor for class uk.ac.ic.doc.automed.DSRConfiguration
 
DSRException - Exception in uk.ac.ic.doc.automed
The class of exceptions generated by DSR.
DSRException(String) - Constructor for exception uk.ac.ic.doc.automed.DSRException
 
dsStart - Variable in class uk.ac.bbk.dcs.automed.qproc.functions.internal.CallToWrapper
 
dsTimeSpent - Static variable in class uk.ac.bbk.dcs.automed.qproc.functions.internal.CallToWrapper
 
duplicateDOM(Document) - Static method in class uk.ac.bbk.dcs.automed.xml.utilities.XMLUtilities
Method that creates and returns a new DOM representation of the input one - no validation on either doc.
duplicateDOM(String, boolean) - Static method in class uk.ac.bbk.dcs.automed.xml.utilities.XMLUtilities
 
duplicatePathway(Schema, Schema) - Method in class uk.ac.bbk.dcs.automed.evolution.schemaModelEvolution.ExtensionalSchemaEvolution
 
DuplicatePersistentHandler - Interface in uk.ac.ic.doc.automed.util.persist
DuplicatePersistentHandler.java Used by user application code to call appropriate persistent handler object
duplicateSchema(Schema, String) - Static method in class uk.ac.bbk.dcs.automed.evolution.EvolutionUtility
 
duplicateSchema(Schema, String) - Static method in class uk.ac.bbk.dcs.automed.evolution2.EvolutionUtility
 
duplicateTransformation(Schema) - Method in class uk.ac.ic.doc.automed.reps.Transformation
Creates a duplicate of the transformation.

E

Edge - Class in uk.ac.bbk.dcs.automed.hdmstore
A Edge represents an HDM edge, which can be of any length, each element (or Span) can be a node or an edge and edges can be named (optionally).
Edge(String, String[]) - Constructor for class uk.ac.bbk.dcs.automed.hdmstore.Edge
Construct a representation of an edge from a string representing its type and an array of spans
edge() - Method in class uk.ac.bbk.dcs.automed.hdmstore.EdgeElement
get the edge
EDGE_ADDED - Static variable in class uk.ac.ic.doc.automed.reps.NetworkChangeEvent
 
EDGE_REMOVED - Static variable in class uk.ac.ic.doc.automed.reps.NetworkChangeEvent
 
edgeAdded(NetworkChangeEvent) - Method in class uk.ac.ic.doc.automed.editor.Gui.EditorFrame
 
edgeAdded(NetworkChangeEvent) - Method in interface uk.ac.ic.doc.automed.reps.NetworkChangeListener
 
EdgeElement - Class in uk.ac.bbk.dcs.automed.hdmstore
An edge element represents a single element of an edge.
edgeExists(Span) - Method in class uk.ac.bbk.dcs.automed.hdmstore.HdmStore
Test to see if an edge exists has been passed a Span structure - split this out into type and and value and return the result.
edgeExists(String, String) - Method in class uk.ac.bbk.dcs.automed.hdmstore.HdmStore
Does and edge with this type and value exist in the HDM store?
edgeInstanceExists(String, String) - Method in class uk.ac.bbk.dcs.automed.hdmstore.HdmStore
Check to see if an instance of this edge exists in the HDM store
edgeNameIsUnique(String) - Method in class uk.ac.bbk.dcs.automed.hdmstore.HdmStore
Edge names dont have to be unique - the combination of edge name and types is unique i.e.
edgeOrNode() - Method in class uk.ac.bbk.dcs.automed.hdmstore.Span
Get the edgeOrNode indicator
edgeRemoved(NetworkChangeEvent) - Method in class uk.ac.ic.doc.automed.editor.Gui.EditorFrame
 
edgeRemoved(NetworkChangeEvent) - Method in interface uk.ac.ic.doc.automed.reps.NetworkChangeListener
 
edgeSpan - Static variable in class uk.ac.bbk.dcs.automed.hdmstore.HdmStore
 
edgeTypeExists(String) - Method in class uk.ac.bbk.dcs.automed.hdmstore.HdmStore
Given an edge type e.g.
edgeTypeForName(String) - Method in class uk.ac.bbk.dcs.automed.hdmstore.HdmStore
Assuming edge name is unique (which need to be checked before calling) return its edge type e.g.
edgeValueAsString() - Method in class uk.ac.bbk.dcs.automed.hdmstore.Edge
Get the edge values as a string
Editor - Class in uk.ac.ic.doc.automed.editor
 
Editor(String[]) - Constructor for class uk.ac.ic.doc.automed.editor.Editor
 
EditorException - Exception in uk.ac.ic.doc.automed.editor
 
EditorException(String) - Constructor for exception uk.ac.ic.doc.automed.editor.EditorException
 
EditorPanel - Class in uk.ac.ic.doc.automed.editor
Provide a JPanel extension to display arcs and vertices using implementations of DrawableArc and DrawableVertex.
EditorPanel(Gui, Map, Gui.EditorFrame) - Constructor for class uk.ac.ic.doc.automed.editor.EditorPanel
 
EditorPanel(Gui, Gui.EditorFrame) - Constructor for class uk.ac.ic.doc.automed.editor.EditorPanel
 
element - Static variable in class uk.ac.bbk.dcs.automed.xml.XMLConstants
 
Element - Class in uk.ac.ic.doc.automed.wrappers.xsdomobject
Define the internal representation for an XMLSchema element
Element(String, String) - Constructor for class uk.ac.ic.doc.automed.wrappers.xsdomobject.Element
Creates a new instance of Element
Element(String, String, int, boolean) - Constructor for class uk.ac.ic.doc.automed.wrappers.xsdomobject.Element
Creates a new instance of Element with a type and a boundedness
elementAttributeQuery(String, String) - Method in class uk.ac.bbk.dcs.automed.xml.wrappers.DOMWrapper
 
elementAttributeQuery(String, String) - Method in class uk.ac.bbk.dcs.automed.xml.wrappers.NXDBWrapper
 
elementAttributeQuery(String, String) - Method in class uk.ac.bbk.dcs.automed.xml.wrappers.SAXWrapper
 
elementAttributeQuery(String, String) - Method in class uk.ac.bbk.dcs.automed.xml.wrappers.XMLWrapper
 
elementElementQuery(String, String, int) - Method in class uk.ac.bbk.dcs.automed.xml.wrappers.DOMWrapper
Nodes are compared based on elementName:count, not their whole UID
elementElementQuery(String, String, int) - Method in class uk.ac.bbk.dcs.automed.xml.wrappers.NXDBWrapper
 
elementElementQuery(String, String, int) - Method in class uk.ac.bbk.dcs.automed.xml.wrappers.SAXWrapper
Nodes are compared based on elementName:count, not their whole UID
elementElementQuery(String, String) - Method in class uk.ac.bbk.dcs.automed.xml.wrappers.XMLWrapper
 
elementElementQuery(String, String, int) - Method in class uk.ac.bbk.dcs.automed.xml.wrappers.XMLWrapper
 
ElementNameModule - Class in uk.ac.ic.doc.automed.matching.modules.bidirectionalmap
The module that compares the names of the schema elements
ElementNameModule(ArrayList, ArrayList) - Constructor for class uk.ac.ic.doc.automed.matching.modules.bidirectionalmap.ElementNameModule
Constructs a ElementNameModule to compare the specified schema elements in the input lists.
ElementNameModule(SchemaElement[], SchemaElement[]) - Constructor for class uk.ac.ic.doc.automed.matching.modules.bidirectionalmap.ElementNameModule
Constructs a ElementNameModule to compare the specified schema elements in the input arrays.
ElementNameModule(SchemaElementPair[]) - Constructor for class uk.ac.ic.doc.automed.matching.modules.bidirectionalmap.ElementNameModule
 
ElementNameModule - Class in uk.ac.ic.doc.automed.matching.modules.intervals
The module that compares the names of the schema elements
ElementNameModule(ArrayList, ArrayList) - Constructor for class uk.ac.ic.doc.automed.matching.modules.intervals.ElementNameModule
Constructs a ElementNameModule to compare the specified schema elements in the input lists.
ElementNameModule(SchemaElement[], SchemaElement[]) - Constructor for class uk.ac.ic.doc.automed.matching.modules.intervals.ElementNameModule
Constructs a ElementNameModule to compare the specified schema elements in the input arrays.
ElementNameModule(SchemaElementPair[]) - Constructor for class uk.ac.ic.doc.automed.matching.modules.intervals.ElementNameModule
 
ElementNameModule - Class in uk.ac.ic.doc.automed.matching.modules.probability.binary
The module that compares the names of the schema elements
ElementNameModule(ArrayList, ArrayList) - Constructor for class uk.ac.ic.doc.automed.matching.modules.probability.binary.ElementNameModule
Constructs a ElementNameModule to compare the specified schema elements in the input lists.
ElementNameModule(SchemaElement[], SchemaElement[]) - Constructor for class uk.ac.ic.doc.automed.matching.modules.probability.binary.ElementNameModule
Constructs a ElementNameModule to compare the specified schema elements in the input arrays.
ElementNameModule(SchemaElementPair[]) - Constructor for class uk.ac.ic.doc.automed.matching.modules.probability.binary.ElementNameModule
 
ElementNameModule - Class in uk.ac.ic.doc.automed.matching.modules.probability.senary
The module that compares the names of the schema elements
ElementNameModule(ArrayList, ArrayList) - Constructor for class uk.ac.ic.doc.automed.matching.modules.probability.senary.ElementNameModule
Constructs a ElementNameModule to compare the specified schema elements in the input lists.
ElementNameModule(SchemaElement[], SchemaElement[]) - Constructor for class uk.ac.ic.doc.automed.matching.modules.probability.senary.ElementNameModule
Constructs a ElementNameModule to compare the specified schema elements in the input arrays.
ElementNameModule(SchemaElementPair[]) - Constructor for class uk.ac.ic.doc.automed.matching.modules.probability.senary.ElementNameModule
 
elementOrPCData - Static variable in class uk.ac.bbk.dcs.automed.xml.XMLConstants
 
elementPCDataQuery(String, int) - Method in class uk.ac.bbk.dcs.automed.xml.wrappers.DOMWrapper
 
elementPCDataQuery(String, int) - Method in class uk.ac.bbk.dcs.automed.xml.wrappers.NXDBWrapper
 
elementPCDataQuery(String, int) - Method in class uk.ac.bbk.dcs.automed.xml.wrappers.SAXWrapper
 
elementPCDataQuery(String) - Method in class uk.ac.bbk.dcs.automed.xml.wrappers.XMLWrapper
 
elementPCDataQuery(String, int) - Method in class uk.ac.bbk.dcs.automed.xml.wrappers.XMLWrapper
 
elementQuery(String) - Method in class uk.ac.bbk.dcs.automed.xml.wrappers.DOMWrapper
 
elementQuery(String) - Method in class uk.ac.bbk.dcs.automed.xml.wrappers.NXDBWrapper
 
elementQuery(String) - Method in class uk.ac.bbk.dcs.automed.xml.wrappers.SAXWrapper
 
elementQuery(String) - Method in class uk.ac.bbk.dcs.automed.xml.wrappers.XMLWrapper
 
ElementsFromRDB - Class in uk.ac.bbk.dcs.automed.xml.functions
Input 1: the unique ID of the element whose extent this function is creating
Input 2: the scheme of the relational table
ElementsFromRDB() - Constructor for class uk.ac.bbk.dcs.automed.xml.functions.ElementsFromRDB
 
elementType() - Method in class uk.ac.bbk.dcs.automed.hdmstore.EdgeElement
get the elementType;
ElementVectorRepresentation - Class in uk.ac.ic.doc.automed.matching.modules
 
ElementVectorRepresentation(SchemaElement, double[]) - Constructor for class uk.ac.ic.doc.automed.matching.modules.ElementVectorRepresentation
 
ELSE - Static variable in interface uk.ac.bbk.dcs.automed.qproc.translators.xquery.XQuery2IQLConstants
 
ELSE - Static variable in class uk.ac.ic.doc.automed.matching.SchemaElement
 
empty - Static variable in class uk.ac.ic.doc.automed.wrappers.AutoMedWrapperFactory
 
emptyBag() - Static method in class uk.ac.bbk.dcs.automed.qproc.iql.ASG
Returns the ASG representation of the empty Bag - a BNil constructor.
emptyCollection(String) - Static method in class uk.ac.bbk.dcs.automed.qproc.iql.ASG
 
emptyKeyProtection - Static variable in class uk.ac.ic.doc.automed.wrappers.AutoMedWrapper
 
emptyKeys - Static variable in class uk.ac.ic.doc.automed.wrappers.AutoMedWrapper
 
emptyList() - Static method in class uk.ac.bbk.dcs.automed.qproc.iql.ASG
Returns the ASG representation of the empty List - a Nil constructor.
emptySet() - Static method in class uk.ac.bbk.dcs.automed.qproc.iql.ASG
Returns the ASG representation of the empty Set - an SNil constructor.
enable_tracing() - Method in class uk.ac.bbk.dcs.automed.qproc.annotate.grammars.schemes.Schemes
 
enable_tracing() - Method in class uk.ac.bbk.dcs.automed.qproc.annotate.grammars.simpleComp.SimpleComp
 
enable_tracing() - Method in class uk.ac.bbk.dcs.automed.qproc.annotate.grammars.simpleCompAppend.SimpleCompAppend
 
enable_tracing() - Method in class uk.ac.bbk.dcs.automed.qproc.annotate.grammars.simpleCompAppendMonus.SimpleCompAppendMonus
 
enable_tracing() - Method in class uk.ac.bbk.dcs.automed.qproc.translators.xquery.XQuery2IQL
 
ENCRYPTION - Static variable in class uk.ac.ic.doc.automed.p2p.protocol.P2PConstants
 
END_DOCUMENT - Static variable in interface uk.ac.ic.doc.automed.xml.XMLifyConstants
 
END_ELEMENT - Static variable in interface uk.ac.ic.doc.automed.xml.XMLifyConstants
 
END_OF_FRAG - Static variable in class uk.ac.ic.doc.automed.p2p.protocol.P2PConstants
performative: end of fragmentation
endApplyInSpine - Variable in class uk.ac.bbk.dcs.automed.qproc.evaluate.Evaluator
 
endBuiltIn - Variable in class uk.ac.bbk.dcs.automed.qproc.evaluate.Evaluator
 
endColumn - Variable in class uk.ac.bbk.dcs.automed.qproc.annotate.grammars.schemes.Token
beginLine and beginColumn describe the position of the first character of this token; endLine and endColumn describe the position of the last character of this token.
endColumn - Variable in class uk.ac.bbk.dcs.automed.qproc.annotate.grammars.simpleComp.Token
beginLine and beginColumn describe the position of the first character of this token; endLine and endColumn describe the position of the last character of this token.
endColumn - Variable in class uk.ac.bbk.dcs.automed.qproc.annotate.grammars.simpleCompAppend.Token
beginLine and beginColumn describe the position of the first character of this token; endLine and endColumn describe the position of the last character of this token.
endColumn - Variable in class uk.ac.bbk.dcs.automed.qproc.annotate.grammars.simpleCompAppendMonus.Token
beginLine and beginColumn describe the position of the first character of this token; endLine and endColumn describe the position of the last character of this token.
endColumn - Variable in class uk.ac.bbk.dcs.automed.qproc.translators.xquery.Token
beginLine and beginColumn describe the position of the first character of this token; endLine and endColumn describe the position of the last character of this token.
endDocument() - Method in class uk.ac.bbk.dcs.automed.xml.wrappers.XMLDSSSAX
 
endDocument() - Method in class uk.ac.ic.doc.automed.xml.XMLReader
 
endElement(String, String, String) - Method in class uk.ac.bbk.dcs.automed.xml.wrappers.XMLDSSSAX
 
endElement(String) - Method in class uk.ac.ic.doc.automed.xml.XMLReader
 
endEval - Variable in class uk.ac.bbk.dcs.automed.qproc.evaluate.Evaluator
 
endLine - Variable in class uk.ac.bbk.dcs.automed.qproc.annotate.grammars.schemes.Token
beginLine and beginColumn describe the position of the first character of this token; endLine and endColumn describe the position of the last character of this token.
endLine - Variable in class uk.ac.bbk.dcs.automed.qproc.annotate.grammars.simpleComp.Token
beginLine and beginColumn describe the position of the first character of this token; endLine and endColumn describe the position of the last character of this token.
endLine - Variable in class uk.ac.bbk.dcs.automed.qproc.annotate.grammars.simpleCompAppend.Token
beginLine and beginColumn describe the position of the first character of this token; endLine and endColumn describe the position of the last character of this token.
endLine - Variable in class uk.ac.bbk.dcs.automed.qproc.annotate.grammars.simpleCompAppendMonus.Token
beginLine and beginColumn describe the position of the first character of this token; endLine and endColumn describe the position of the last character of this token.
endLine - Variable in class uk.ac.bbk.dcs.automed.qproc.translators.xquery.Token
beginLine and beginColumn describe the position of the first character of this token; endLine and endColumn describe the position of the last character of this token.
endRL - Variable in class uk.ac.bbk.dcs.automed.qproc.evaluate.Evaluator
 
endWHNF - Variable in class uk.ac.bbk.dcs.automed.qproc.evaluate.Evaluator
 
EnhancedDHTFactory - Class in uk.ac.ic.doc.automed.p2p.overlay
EnhancedDHTFactory.java

EnhancedDHTFactory() - Constructor for class uk.ac.ic.doc.automed.p2p.overlay.EnhancedDHTFactory
 
EnhancedDHTImpl - Class in uk.ac.ic.doc.automed.p2p.overlay
EnhancedDHTImpl.java

Extends DHTImpl to support the filtering of the entire result value set instead of one value at a time.
EnhancedDHTImpl(DHTConfiguration, ID) - Constructor for class uk.ac.ic.doc.automed.p2p.overlay.EnhancedDHTImpl
 
EnhancedDHTImpl(short, short, DHTConfiguration, ID) - Constructor for class uk.ac.ic.doc.automed.p2p.overlay.EnhancedDHTImpl
 
EnhancedDHTImpl(DHTConfiguration, RoutingService) - Constructor for class uk.ac.ic.doc.automed.p2p.overlay.EnhancedDHTImpl
 
ensureDupFree() - Method in class uk.ac.bbk.dcs.automed.qproc.functions.ModifiedArray
 
ensureSorted() - Method in class uk.ac.bbk.dcs.automed.qproc.functions.ModifiedArray
 
ensureSortedDupFree() - Method in class uk.ac.bbk.dcs.automed.qproc.functions.ModifiedArray
 
entryToObject(TupleInput) - Method in class uk.ac.ic.doc.automed.qproc.cache.CacheObjectBinding
Convert a database entry into a CacheItem object
entryToObject(TupleInput) - Method in class uk.ac.ic.doc.automed.util.persist.AbstractObjectBinding
Constructs a key or data object from a TupleInput entry.
Environment - Class in uk.ac.bbk.dcs.automed.qproc.iql
 
Environment() - Constructor for class uk.ac.bbk.dcs.automed.qproc.iql.Environment
 
Environment(String) - Constructor for class uk.ac.bbk.dcs.automed.qproc.iql.Environment
 
Environment(File) - Constructor for class uk.ac.bbk.dcs.automed.qproc.iql.Environment
 
EnvLexer - Class in uk.ac.bbk.dcs.automed.qproc.iql
 
EnvLexer(Reader) - Constructor for class uk.ac.bbk.dcs.automed.qproc.iql.EnvLexer
 
EnvLexer(InputStream) - Constructor for class uk.ac.bbk.dcs.automed.qproc.iql.EnvLexer
 
EnvParser - Class in uk.ac.bbk.dcs.automed.qproc.iql
CUP v0.10j generated parser.
EnvParser() - Constructor for class uk.ac.bbk.dcs.automed.qproc.iql.EnvParser
Default constructor.
EnvParser(Scanner) - Constructor for class uk.ac.bbk.dcs.automed.qproc.iql.EnvParser
Constructor which sets the default scanner.
EnvSym - Class in uk.ac.bbk.dcs.automed.qproc.iql
CUP generated class containing symbol constants.
EnvSym() - Constructor for class uk.ac.bbk.dcs.automed.qproc.iql.EnvSym
 
EOF - Static variable in interface uk.ac.bbk.dcs.automed.qproc.annotate.grammars.schemes.SchemesConstants
 
EOF - Static variable in interface uk.ac.bbk.dcs.automed.qproc.annotate.grammars.simpleComp.SimpleCompConstants
 
EOF - Static variable in interface uk.ac.bbk.dcs.automed.qproc.annotate.grammars.simpleCompAppend.SimpleCompAppendConstants
 
EOF - Static variable in interface uk.ac.bbk.dcs.automed.qproc.annotate.grammars.simpleCompAppendMonus.SimpleCompAppendMonusConstants
 
EOF - Static variable in class uk.ac.bbk.dcs.automed.qproc.iql.EnvSym
 
EOF - Static variable in class uk.ac.bbk.dcs.automed.qproc.iql.FSym
 
EOF - Static variable in class uk.ac.bbk.dcs.automed.qproc.iql.QSym
 
EOF - Static variable in interface uk.ac.bbk.dcs.automed.qproc.translators.xquery.XQuery2IQLConstants
 
EOF - Static variable in class uk.ac.ic.doc.automed.reps.Syntax.Token
 
EOF_sym() - Method in class uk.ac.bbk.dcs.automed.qproc.iql.EnvParser
EOF Symbol index.
EOF_sym() - Method in class uk.ac.bbk.dcs.automed.qproc.iql.QParser
EOF Symbol index.
eol - Variable in exception uk.ac.bbk.dcs.automed.qproc.annotate.grammars.schemes.ParseException
The end of line string for this machine.
eol - Variable in exception uk.ac.bbk.dcs.automed.qproc.annotate.grammars.simpleComp.ParseException
The end of line string for this machine.
eol - Variable in exception uk.ac.bbk.dcs.automed.qproc.annotate.grammars.simpleCompAppend.ParseException
The end of line string for this machine.
eol - Variable in exception uk.ac.bbk.dcs.automed.qproc.annotate.grammars.simpleCompAppendMonus.ParseException
The end of line string for this machine.
eol - Variable in exception uk.ac.bbk.dcs.automed.qproc.translators.xquery.ParseException
The end of line string for this machine.
EOL - Static variable in class uk.ac.ic.doc.automed.reps.Syntax.Token
 
ep - Variable in class uk.ac.ic.doc.automed.editor.DrawArc
 
ep - Variable in class uk.ac.ic.doc.automed.editor.DrawVertex
 
ep - Variable in class uk.ac.ic.doc.automed.editor.Gui
 
Equal - Static variable in class uk.ac.bbk.dcs.automed.qproc.iql.QSym
 
EQUAL - Static variable in class uk.ac.ic.doc.automed.wrappers.SQLQuery
SQL equality predicate for use within WHERE expressions
Equals - Class in uk.ac.bbk.dcs.automed.qproc.functions.comparison
 
Equals() - Constructor for class uk.ac.bbk.dcs.automed.qproc.functions.comparison.Equals
 
equals(Object) - Method in class uk.ac.bbk.dcs.automed.qproc.iql.ASG
 
equals(Object) - Method in class uk.ac.bbk.dcs.automed.qproc.iql.Cell
 
equals(Object) - Method in class uk.ac.bbk.dcs.automed.qproc.iql.SchemeInfo
 
equals(Object) - Method in class uk.ac.bbk.dcs.automed.qproc.reformulate.ViewKey
 
EQUALS - Static variable in interface uk.ac.bbk.dcs.automed.qproc.translators.xquery.XQuery2IQLConstants
 
equals(DPoint) - Method in class uk.ac.ic.doc.automed.editor.autolayout.DPoint
 
equals(Object) - Method in class uk.ac.ic.doc.automed.matching.Averages
 
equals(BidirectionalDegree) - Method in class uk.ac.ic.doc.automed.matching.BidirectionalDegree
Returns true if this degree is equal to the specified degree.
equals(Object) - Method in class uk.ac.ic.doc.automed.matching.Instance
 
equals(Object) - Method in class uk.ac.ic.doc.automed.matching.Range
 
equals(Object) - Method in class uk.ac.ic.doc.automed.matching.relationships.Compatibility
 
equals(Object) - Method in class uk.ac.ic.doc.automed.matching.relationships.Disjointness
 
equals(Object) - Method in class uk.ac.ic.doc.automed.matching.relationships.Equivalence
 
equals(Object) - Method in class uk.ac.ic.doc.automed.matching.relationships.Incompatibility
 
equals(Object) - Method in class uk.ac.ic.doc.automed.matching.relationships.Overlapness
 
equals(Object) - Method in class uk.ac.ic.doc.automed.matching.relationships.SemanticRelationship
Compares this object against the specified object.
equals(Object) - Method in class uk.ac.ic.doc.automed.matching.relationships.Subsumption
 
equals(Object) - Method in class uk.ac.ic.doc.automed.matching.SchemaElement
Compares this object against the specified object.
equals(Object) - Method in class uk.ac.ic.doc.automed.matching.SchemaElementPair
Compares this object against the specified object.
equals(Object) - Method in class uk.ac.ic.doc.automed.p2p.directory.ModelDescription
 
equals(Object) - Method in class uk.ac.ic.doc.automed.p2p.directory.PeerDescription
 
equals(Object) - Method in class uk.ac.ic.doc.automed.p2p.directory.SchemaDescription
 
equals(Object) - Method in class uk.ac.ic.doc.automed.reps.Construct
 
equals(Object) - Method in class uk.ac.ic.doc.automed.reps.PersistentKey
 
equals(Object) - Method in class uk.ac.ic.doc.automed.reps.SchemaObject
 
equals(Object) - Method in class uk.ac.ic.doc.automed.util.persist.PersistentKey
 
equals(AutoMedType) - Method in class uk.ac.ic.doc.automed.wrappers.AutoMedBoolean
 
equals(AutoMedType) - Method in class uk.ac.ic.doc.automed.wrappers.AutoMedFloat
 
equals(AutoMedType) - Method in class uk.ac.ic.doc.automed.wrappers.AutoMedInteger
 
equals(AutoMedType) - Method in class uk.ac.ic.doc.automed.wrappers.AutoMedString
 
equals(AutoMedType) - Method in class uk.ac.ic.doc.automed.wrappers.AutoMedTime
 
equals(AutoMedType) - Method in class uk.ac.ic.doc.automed.wrappers.AutoMedTuple
 
equals(AutoMedType) - Method in class uk.ac.ic.doc.automed.wrappers.AutoMedType
Test two AutoMedTypes for equality, performing conversions as appropriate.
equals(Object) - Method in class uk.ac.ic.doc.rodex.qproc.QuerySubGoal
Override the comparison method
equals(Object) - Method in class uk.ac.ic.doc.rodex.qproc.QueryVariable
Compare string-representation of two query variable objects
Equivalence - Class in uk.ac.ic.doc.automed.matching.relationships
The Equivalence class represent the equivalence semantic relationship between SchemaElement objects.
equivalents - Variable in class uk.ac.ic.doc.automed.matching.Integrator
 
ERROR - Static variable in class uk.ac.bbk.dcs.automed.hdmstore.Debug
 
error(String) - Method in class uk.ac.bbk.dcs.automed.hdmstore.Debug
Write an error level message
error - Static variable in class uk.ac.bbk.dcs.automed.qproc.iql.EnvSym
 
error - Static variable in class uk.ac.bbk.dcs.automed.qproc.iql.FSym
 
error - Static variable in class uk.ac.bbk.dcs.automed.qproc.iql.QSym
 
error(JFrame, String, Exception) - Static method in class uk.ac.ic.doc.automed.p2p.gui.P2PGui
 
error(JFrame, String, String) - Static method in class uk.ac.ic.doc.automed.p2p.gui.P2PGui
 
ERROR - Static variable in class uk.ac.ic.doc.automed.p2p.protocol.P2PConstants
performative
error(String) - Static method in class uk.ac.ic.doc.automed.util.Logger
 
error(String, Throwable) - Static method in class uk.ac.ic.doc.automed.util.Logger
 
error(Throwable) - Static method in class uk.ac.ic.doc.automed.util.Logger
 
error(String, String, String, Throwable) - Static method in class uk.ac.ic.doc.automed.util.Logger
 
ERROR - Static variable in interface uk.ac.ic.doc.automed.xml.XMLifyConstants
 
error(SAXParseException) - Method in class uk.ac.ic.doc.automed.xml.XMLReader
 
ERROR_LOG_FILE - Static variable in class uk.ac.ic.doc.automed.util.LogOutputHandler
 
error_sym() - Method in class uk.ac.bbk.dcs.automed.qproc.iql.EnvParser
error Symbol index.
error_sym() - Method in class uk.ac.bbk.dcs.automed.qproc.iql.QParser
error Symbol index.
ErrorReplyException - Exception in uk.ac.ic.doc.automed.p2p
 
ErrorReplyException() - Constructor for exception uk.ac.ic.doc.automed.p2p.ErrorReplyException
 
ErrorReplyException(String, String) - Constructor for exception uk.ac.ic.doc.automed.p2p.ErrorReplyException
 
ErrorReplyException(AbstractMessage) - Constructor for exception uk.ac.ic.doc.automed.p2p.ErrorReplyException
 
escapedSQLID(Object) - Method in class uk.ac.bbk.dcs.automed.wrappers.MSAccessWrapper
Ensure that Postgres table names and column names starting in capitals are put in double quotes
escapedSQLID(Object) - Method in class uk.ac.ic.doc.automed.wrappers.HsqldbWrapper
Ensure that Hsqldb table names and column names starting in capitals are put in double quotes
escapedSQLID(Object) - Method in class uk.ac.ic.doc.automed.wrappers.PostgresWrapper
Ensure that Postgres table names and column names starting in capitals are put in double quotes
escapedSQLID(Object) - Method in class uk.ac.ic.doc.automed.wrappers.SQLWrapper
Perform what escaping is necessary on SQL table names and column names.
escapeSQLString(String) - Static method in class uk.ac.ic.doc.automed.STR
Take a string, and escape its characters such the \ character will be stored in SQL correctly.
escapeString(String) - Static method in class uk.ac.ic.doc.automed.reps.Syntax
Take a string, and escape its characters such the \ character will print correctly.
EV_AFTER_EXECUTION - Static variable in interface uk.ac.ic.doc.automed.qproc.cache.CachePolicy
 
EV_BEFORE_EXECUTION - Static variable in interface uk.ac.ic.doc.automed.qproc.cache.CachePolicy
 
EV_FAIL_TO_COMMUNICATE - Static variable in interface uk.ac.ic.doc.automed.qproc.cache.CachePolicy
 
EV_REMOTE_PEER_NOT_AVAILABLE - Static variable in interface uk.ac.ic.doc.automed.qproc.cache.CachePolicy
 
EV_SOURCE_SCHEMA_NOT_AVAILABLE - Static variable in interface uk.ac.ic.doc.automed.qproc.cache.CachePolicy
 
evaluate(String) - Method in class uk.ac.bbk.dcs.automed.dataWarehousing.util.IQLEvaluator4DW
 
evaluate(Cell) - Method in class uk.ac.bbk.dcs.automed.dataWarehousing.util.IQLEvaluator4DW
 
evaluate(ASG) - Method in class uk.ac.bbk.dcs.automed.dataWarehousing.util.IQLEvaluator4DW
 
evaluate(ASG, QueryProcessorConfiguration) - Method in class uk.ac.bbk.dcs.automed.qproc.evaluate.Evaluator
Deprecated. use Evaluator.evaluate(ASG, Map, QueryProcessorConfiguration) instead
evaluate(ASG, Map, QueryProcessorConfiguration) - Method in class uk.ac.bbk.dcs.automed.qproc.evaluate.Evaluator
Evaluates g to normal form.
evaluate(Cell) - Method in class uk.ac.bbk.dcs.automed.qproc.evaluate.Evaluator
Evaluates the graph of which root is the root to normal form.
evaluate(ASG, Map, QueryProcessorConfiguration) - Method in class uk.ac.ic.doc.automed.qproc.eval.P2PQueryEvaluator
 
evaluate(ASG, Map, QueryProcessorConfiguration) - Method in interface uk.ac.ic.doc.automed.qproc.eval.QueryEvaluationProvider
Evaluate an IQL query based on a given configuration
evaluateAction(String, int, QueryProcessorConfiguration) - Method in interface uk.ac.ic.doc.automed.qproc.cache.CachePolicy
Evalute a set of of conditions to produce the appropriate cache actions
evaluateAction(String, int, QueryProcessorConfiguration) - Method in class uk.ac.ic.doc.automed.qproc.cache.CachePolicy2
Evalute a set of of conditions to produce the appropriate cache actions
evaluateAction(String, int, QueryProcessorConfiguration) - Method in class uk.ac.ic.doc.automed.qproc.cache.CachePolicy3
Evalute a set of of conditions to produce the appropriate cache actions
evaluateAction(String, int, QueryProcessorConfiguration) - Method in class uk.ac.ic.doc.automed.qproc.cache.DefaultCachePolicy
Evalute a set of of conditions to produce the appropriate cache actions
evaluateMaxUnion(ASG, ASG) - Static method in class uk.ac.bbk.dcs.automed.dataWarehousing.util.Tools4DW
 
EVALUATION_STATE_EVALUATED - Static variable in class uk.ac.bbk.dcs.automed.qproc.iql.Cell
 
EVALUATION_STATE_UNKNOWN - Static variable in class uk.ac.bbk.dcs.automed.qproc.iql.Cell
 
EVALUATION_STATE_WHNF - Static variable in class uk.ac.bbk.dcs.automed.qproc.iql.Cell
 
evaluationTimeSpent - Variable in class uk.ac.bbk.dcs.automed.qproc.evaluate.Evaluator
 
Evaluator - Class in uk.ac.bbk.dcs.automed.qproc.evaluate
The class that coordinates the evaluation of IQL queries.
Evaluator(QueryProcessorConfiguration) - Constructor for class uk.ac.bbk.dcs.automed.qproc.evaluate.Evaluator
 
Evaluator(FunctionTable) - Constructor for class uk.ac.bbk.dcs.automed.qproc.evaluate.Evaluator
Deprecated. use Evaluator.Evaluator(QueryProcessorConfiguration) instead
Evaluator(FunctionTable, int) - Constructor for class uk.ac.bbk.dcs.automed.qproc.evaluate.Evaluator
Deprecated. use Evaluator.Evaluator(QueryProcessorConfiguration) instead
Evolution - Interface in uk.ac.bbk.dcs.automed.evolution
 
Evolution - Class in uk.ac.bbk.dcs.automed.evolution1
 
Evolution() - Constructor for class uk.ac.bbk.dcs.automed.evolution1.Evolution
 
Evolution - Interface in uk.ac.bbk.dcs.automed.evolution2
 
EvolutionException - Exception in uk.ac.bbk.dcs.automed.evolution
 
EvolutionException(String) - Constructor for exception uk.ac.bbk.dcs.automed.evolution.EvolutionException
 
EvolutionException - Exception in uk.ac.bbk.dcs.automed.evolution2
 
EvolutionException(String) - Constructor for exception uk.ac.bbk.dcs.automed.evolution2.EvolutionException
 
EvolutionException(Throwable) - Constructor for exception uk.ac.bbk.dcs.automed.evolution2.EvolutionException
 
evolutionType - Variable in class uk.ac.bbk.dcs.automed.evolution.dataEvolution.DataEvolution
 
evolutionType - Variable in class uk.ac.bbk.dcs.automed.evolution.schemaModelEvolution.SMEvolution
 
evolutionType - Variable in class uk.ac.bbk.dcs.automed.evolution2.dataEvolution.DataEvolution
 
evolutionType - Variable in class uk.ac.bbk.dcs.automed.evolution2.modelEvolution.ModelEvolution
 
evolutionType - Variable in class uk.ac.bbk.dcs.automed.evolution2.schemaEvolution.SchemaEvolution
 
EvolutionUtility - Class in uk.ac.bbk.dcs.automed.evolution
 
EvolutionUtility() - Constructor for class uk.ac.bbk.dcs.automed.evolution.EvolutionUtility
 
EvolutionUtility - Class in uk.ac.bbk.dcs.automed.evolution2
 
EvolutionUtility() - Constructor for class uk.ac.bbk.dcs.automed.evolution2.EvolutionUtility
 
evolve(Transformation) - Method in class uk.ac.bbk.dcs.automed.evolution2.schemaEvolution.ExtensionalSchemaEvolution
 
evolve(Transformation) - Method in class uk.ac.bbk.dcs.automed.evolution2.schemaEvolution.IntegratedSchemaEvolution
 
EVOLVE_ADD - Static variable in interface uk.ac.bbk.dcs.automed.evolution2.Evolution
 
EVOLVE_CONTRACT - Static variable in interface uk.ac.bbk.dcs.automed.evolution2.Evolution
 
EVOLVE_DATA - Static variable in interface uk.ac.bbk.dcs.automed.evolution.Evolution
 
EVOLVE_DATA - Static variable in interface uk.ac.bbk.dcs.automed.evolution2.Evolution
 
EVOLVE_DELETE - Static variable in interface uk.ac.bbk.dcs.automed.evolution2.Evolution
 
EVOLVE_EXTEND - Static variable in interface uk.ac.bbk.dcs.automed.evolution2.Evolution
 
EVOLVE_EXTENTIONAL_SCHEMA - Static variable in interface uk.ac.bbk.dcs.automed.evolution.Evolution
 
EVOLVE_EXTENTIONAL_SCHEMA - Static variable in interface uk.ac.bbk.dcs.automed.evolution2.Evolution
 
EVOLVE_INTEGRATED_SCHEMA - Static variable in interface uk.ac.bbk.dcs.automed.evolution.Evolution
 
EVOLVE_INTEGRATED_SCHEMA - Static variable in interface uk.ac.bbk.dcs.automed.evolution2.Evolution
 
EVOLVE_MODEL - Static variable in interface uk.ac.bbk.dcs.automed.evolution2.Evolution
 
EVOLVE_RENAME - Static variable in interface uk.ac.bbk.dcs.automed.evolution2.Evolution
 
EVOLVE_SCHEMA - Static variable in interface uk.ac.bbk.dcs.automed.evolution2.Evolution
 
EVOLVE_SCHEMAMODEL - Static variable in interface uk.ac.bbk.dcs.automed.evolution.Evolution
 
evolvedSchema - Variable in class uk.ac.bbk.dcs.automed.evolution.schemaModelEvolution.SMEvolution
 
exactlyTwo(Object[]) - Static method in class uk.ac.ic.doc.automed.editor.Gui
 
EXCLUDE - Static variable in interface uk.ac.ic.doc.automed.xml.XMLifyConstants
 
EXCLUDE_MEMBER - Static variable in interface uk.ac.ic.doc.automed.xml.XMLifyConstants
 
executeButton - Variable in class uk.ac.ic.doc.automed.editor.IQLTool
 
executeCommand(String) - Method in class uk.ac.ic.doc.automed.util.db.DBAccess
Mostly used for executing control commands, e.g.
executeCommand(String) - Method in class uk.ac.ic.doc.automed.util.db.DBEmbedded
Mostly used for executing control commands, e.g.
executeCommand(String) - Method in class uk.ac.ic.doc.automed.util.db.DBPostgres
Mostly used for executing control commands, e.g.
executeCSVQuery(ASG) - Method in class uk.ac.ic.doc.automed.wrappers.CSVWrapper
Given an IQL query, this method queries the CSV file, then returns the answer in ASG format.
executeIQL(ASG) - Method in class uk.ac.bbk.dcs.automed.hdmstore.HdmWrapper
Takes ASG query and passes it to a LowLevelWrapperHdm for processing.
executeIQL(ASG) - Method in class uk.ac.bbk.dcs.automed.xml.wrappers.XMLWrapper
 
executeIQL(ASG) - Method in class uk.ac.ic.doc.automed.wrappers.AutoMedWrapper
Execute an IQL query on the datasource.
executeIQL(ASG, String) - Method in class uk.ac.ic.doc.automed.wrappers.AutoMedWrapper
Execute an IQL query on the datasource.
executeIQL(ASG) - Method in class uk.ac.ic.doc.automed.wrappers.CSVWrapper
 
executeIQL(ASG) - Method in class uk.ac.ic.doc.automed.wrappers.HDMWrapper
Takes ASG query and passes it to a LowLevelWrapperHdm for processing.
executeIQL(ASG, QueryEvaluationConfiguration) - Method in class uk.ac.ic.doc.automed.wrappers.P2PWrapper
Execute query with constraints.
executeIQL(ASG) - Method in class uk.ac.ic.doc.automed.wrappers.P2PWrapper
Execute an IQL query on the datasource.
executeIQL(ASG) - Method in class uk.ac.ic.doc.automed.wrappers.QueryCacheWrapper
Execute a query against the cache
executeIQL(ASG) - Method in class uk.ac.ic.doc.automed.wrappers.SQLWrapper
 
executeIQL(ASG) - Method in class uk.ac.ic.doc.automed.wrappers.UMLWrapper
 
executeIQL(ASG) - Method in class uk.ac.ic.doc.automed.wrappers.XMLSchemaWrapper
 
executeIQL(ASG) - Method in class uk.ac.ic.doc.automed.wrappers.YattaWrapper
 
executeLocalQuery(AutoMedQuery) - Method in class uk.ac.bbk.dcs.automed.hdmstore.HdmWrapper
This is a stub required as the AutoMedWrapper requires it
executeLocalQuery(AutoMedQuery) - Method in class uk.ac.bbk.dcs.automed.xml.wrappers.XMLWrapper
 
executeLocalQuery(AutoMedQuery) - Method in class uk.ac.ic.doc.automed.wrappers.AutoMedWrapper
Execute a query in the datasource's native query language, and obtain a result in an AutoMedResult class
executeLocalQuery(AutoMedQuery) - Method in class uk.ac.ic.doc.automed.wrappers.HDMWrapper
This is a stub required as the AutoMedWrapper requires it
executeLocalQuery(AutoMedQuery) - Method in class uk.ac.ic.doc.automed.wrappers.SQLWrapper
 
executeLocalQuery(AutoMedQuery) - Method in class uk.ac.ic.doc.automed.wrappers.YattaWrapper
 
executeQuery(String) - Static method in class uk.ac.ic.doc.automed.MDR
Execute a SQL query on the repository, and return the result in a Vector
executeQuery(String) - Static method in class uk.ac.ic.doc.automed.STR
Execute a SQL query on the repository, and return the result in a Vector
executeQuery(String) - Method in class uk.ac.ic.doc.automed.util.db.DBAccess
This method is used for SELECT statement
executeQuery(String) - Method in class uk.ac.ic.doc.automed.util.db.DBEmbedded
This method is used for SELECT statement
executeQuery(String) - Method in class uk.ac.ic.doc.automed.util.db.DBPostgres
This method is used for SELECT statement
executeQuery(AbstractMessage) - Method in class uk.ac.ic.doc.rodex.p2p.protocol.QEP
Execute query and return result (server-side).
executeSQLQuery(SQLQuery) - Method in class uk.ac.ic.doc.automed.wrappers.SQLWrapper
Execute a query on the data source, returning the result in the standard format for instances of SQL queries.
executeStatement(String, String, boolean) - Static method in class uk.ac.ic.doc.automed.DSR
 
executeStatement(String, String, boolean, Set) - Static method in class uk.ac.ic.doc.automed.DSR
 
executeStatement(String) - Method in class uk.ac.ic.doc.automed.util.db.DBAccess
This method is used for making changes to data, e.g.
executeStatement(String) - Method in class uk.ac.ic.doc.automed.util.db.DBEmbedded
This method is used for making changes to data, e.g.
executeStatement(String) - Method in class uk.ac.ic.doc.automed.util.db.DBPostgres
This method is used for making changes to data, e.g.
executeStatement(String, Connection, OutputStream) - Static method in class uk.ac.ic.doc.automed.Util
 
executeStatement(String, Connection, OutputStream, Set) - Static method in class uk.ac.ic.doc.automed.Util
 
executeStatement(String, Connection, Writer) - Static method in class uk.ac.ic.doc.automed.Util
Executes the sql statement on the JDBC Concection and returns either a ResultSet, an Integer representing the update count or an SQLException if thrown when executing the command.
executeStatement(String, Connection, Writer, Set) - Static method in class uk.ac.ic.doc.automed.Util
 
executeStatements(String, String, boolean) - Static method in class uk.ac.ic.doc.automed.DSR
 
executeStatements(String, String, boolean, Set) - Static method in class uk.ac.ic.doc.automed.DSR
 
executeStatements(String, String, Connection, OutputStream) - Static method in class uk.ac.ic.doc.automed.Util
 
executeStatements(String, String, Connection, OutputStream, Set) - Static method in class uk.ac.ic.doc.automed.Util
 
executeStatements(String, String, Connection, Writer) - Static method in class uk.ac.ic.doc.automed.Util
Calls {link #executeStatement(String, Connection, Writer)} with each each statement in sql seperated by del.
executeStatements(String, String, Connection, Writer, Set) - Static method in class uk.ac.ic.doc.automed.Util
 
executeUMLQuery(ASG) - Method in class uk.ac.ic.doc.automed.wrappers.UMLWrapper
Given an IQL query, this method queries the UML file, then returns the answer in ASG format.
executeUpdate(String) - Static method in class uk.ac.ic.doc.automed.MDR
Execute a SQL update on the repository.
executeUpdate(String) - Static method in class uk.ac.ic.doc.automed.STR
Execute a SQL update on the repository.
executeXMLQuery(ASG) - Method in class uk.ac.bbk.dcs.automed.xml.wrappers.XMLWrapper
Given an IQL query, this method queries the XML file, then returns the answer in ASG format.
executeXMLSchemaQuery(ASG) - Method in class uk.ac.ic.doc.automed.wrappers.XMLSchemaWrapper
Given an IQL query, this method queries the XML file, then returns the answer in ASG format.
executeYattaQuery(YattaQuery) - Method in class uk.ac.ic.doc.automed.wrappers.YattaWrapper
 
EXISTING_PEER - Static variable in class uk.ac.ic.doc.automed.p2p.protocol.P2PConstants
Context
exists(String) - Static method in class uk.ac.ic.doc.automed.reps.Model
 
exists(int) - Static method in class uk.ac.ic.doc.automed.reps.Model
 
exists(String) - Static method in class uk.ac.ic.doc.automed.reps.Protocol
Determine if a given named protocol exists in the repository
exists(String) - Static method in class uk.ac.ic.doc.automed.reps.Schema
Returns true is the named schema exists
exists(String) - Static method in class uk.ac.ic.doc.automed.ssd.Pattern
 
exists(String) - Static method in class uk.ac.ic.doc.automed.ssd.SSDFormat
Returns true if the format for the specified ssdformat exists
exists(int) - Static method in class uk.ac.ic.doc.automed.ssd.SSDFormat
Returns true if the format for the specified schema identifier exists
existsIn(SchemaElement, SchemaElementPair[], int) - Method in class uk.ac.ic.doc.automed.matching.Integrator
Returns true if the specified element appears in one of the pairs of the array.
existsIn(String, SchemaObject[]) - Method in class uk.ac.ic.doc.automed.matching.Integrator
Returns true if a schema object with the specified name exists in the array.
EXISTWrapper - Class in uk.ac.bbk.dcs.automed.xml.wrappers
Class Task Description
EXISTWrapper(AccessMethod, String) - Constructor for class uk.ac.bbk.dcs.automed.xml.wrappers.EXISTWrapper
 
EXISTWrapperFactory - Class in uk.ac.bbk.dcs.automed.xml.wrappers
Class Task Description
EXISTWrapperFactory() - Constructor for class uk.ac.bbk.dcs.automed.xml.wrappers.EXISTWrapperFactory
 
exitCommandLine() - Method in class uk.ac.ic.doc.automed.editor.CommandLineDriver
 
exitCommandLine(int) - Method in class uk.ac.ic.doc.automed.editor.CommandLineDriver
 
exitHelp - Static variable in class uk.ac.ic.doc.automed.editor.CommandLineDriver
 
exitMenuItem - Variable in class uk.ac.ic.doc.automed.editor.Gui
 
exitSyntax - Static variable in class uk.ac.ic.doc.automed.editor.CommandLineDriver
 
ExpandBuff(boolean) - Method in class uk.ac.bbk.dcs.automed.qproc.annotate.grammars.schemes.SimpleCharStream
 
ExpandBuff(boolean) - Method in class uk.ac.bbk.dcs.automed.qproc.annotate.grammars.simpleComp.SimpleCharStream
 
ExpandBuff(boolean) - Method in class uk.ac.bbk.dcs.automed.qproc.annotate.grammars.simpleCompAppend.SimpleCharStream
 
ExpandBuff(boolean) - Method in class uk.ac.bbk.dcs.automed.qproc.annotate.grammars.simpleCompAppendMonus.SimpleCharStream
 
ExpandBuff(boolean) - Method in class uk.ac.bbk.dcs.automed.qproc.translators.xquery.SimpleCharStream
 
ExpandedArrayList - Class in uk.ac.ic.doc.automed.editor.autolayout
 
ExpandedArrayList() - Constructor for class uk.ac.ic.doc.automed.editor.autolayout.ExpandedArrayList
 
ExpandedHashMap - Class in uk.ac.ic.doc.automed.editor.autolayout
 
ExpandedHashMap() - Constructor for class uk.ac.ic.doc.automed.editor.autolayout.ExpandedHashMap
Creates a new instance of ExpandedHashMap
expectedTokenSequences - Variable in exception uk.ac.bbk.dcs.automed.qproc.annotate.grammars.schemes.ParseException
Each entry in this array is an array of integers.
expectedTokenSequences - Variable in exception uk.ac.bbk.dcs.automed.qproc.annotate.grammars.simpleComp.ParseException
Each entry in this array is an array of integers.
expectedTokenSequences - Variable in exception uk.ac.bbk.dcs.automed.qproc.annotate.grammars.simpleCompAppend.ParseException
Each entry in this array is an array of integers.
expectedTokenSequences - Variable in exception uk.ac.bbk.dcs.automed.qproc.annotate.grammars.simpleCompAppendMonus.ParseException
Each entry in this array is an array of integers.
expectedTokenSequences - Variable in exception uk.ac.bbk.dcs.automed.qproc.translators.xquery.ParseException
Each entry in this array is an array of integers.
ExperimentalOptimisationProvider - Class in uk.ac.bbk.dcs.automed.qproc.optimise
This class coordinates the application of the logical optimisations.
ExperimentalOptimisationProvider() - Constructor for class uk.ac.bbk.dcs.automed.qproc.optimise.ExperimentalOptimisationProvider
 
ExperimentalOptimisationProvider(Schema, Schema[]) - Constructor for class uk.ac.bbk.dcs.automed.qproc.optimise.ExperimentalOptimisationProvider
 
ExperimentsUtility - Class in uk.ac.bbk.dcs.automed.xml.experiments
Class Task Description
ExperimentsUtility() - Constructor for class uk.ac.bbk.dcs.automed.xml.experiments.ExperimentsUtility
 
explore() - Method in class uk.ac.bbk.dcs.automed.qproc.iql.ASG
 
explore(PrintStream) - Method in class uk.ac.bbk.dcs.automed.qproc.iql.ASG
 
exportConstructs(OutputStream) - Method in class uk.ac.ic.doc.automed.reps.Model
 
exportConstructs(PrintWriter) - Method in class uk.ac.ic.doc.automed.reps.Model
 
exportFile(Object) - Method in class uk.ac.ic.doc.automed.editor.Gui
 
exportFile(Gui, Object[]) - Static method in class uk.ac.ic.doc.automed.editor.Gui
 
exportSchemaObjects(OutputStream) - Method in class uk.ac.ic.doc.automed.reps.Schema
 
exportSchemaObjects(PrintWriter) - Method in class uk.ac.ic.doc.automed.reps.Schema
 
exportSchemes(OutputStream) - Method in class uk.ac.ic.doc.automed.reps.Construct
 
exportSchemes(PrintWriter) - Method in class uk.ac.ic.doc.automed.reps.Construct
 
extend - Static variable in class uk.ac.ic.doc.automed.reps.Syntax.Token
 
ExtendedConstruct - Class in uk.ac.bbk.dcs.automed.evolution2
 
ExtendedConstruct(String, int, String, ExtendedConstruct) - Constructor for class uk.ac.bbk.dcs.automed.evolution2.ExtendedConstruct
 
extendEnvironment(String) - Method in class uk.ac.bbk.dcs.automed.qproc.iql.Environment
 
extendEnvironment(File) - Method in class uk.ac.bbk.dcs.automed.qproc.iql.Environment
 
extendToMatch(Schema, Schema) - Static method in class uk.ac.ic.doc.automed.matching.Integrator
Returns the Schema produced by extending the two schemas with schema objects which are missing from each other.
extendToMatch(Schema) - Method in class uk.ac.ic.doc.automed.reps.Schema
Create a new Schema which contains the same set of constructs as the current schema, plus all those constructs of another schema, which are defined via extend operators.
ExtensionalSchemaEvolution - Class in uk.ac.bbk.dcs.automed.evolution.schemaModelEvolution
 
ExtensionalSchemaEvolution(boolean, Schema, Schema[], Schema[], Schema, Schema, String, Object) - Constructor for class uk.ac.bbk.dcs.automed.evolution.schemaModelEvolution.ExtensionalSchemaEvolution
 
ExtensionalSchemaEvolution - Class in uk.ac.bbk.dcs.automed.evolution1
 
ExtensionalSchemaEvolution - Class in uk.ac.bbk.dcs.automed.evolution2.schemaEvolution
 
ExtensionalSchemaEvolution(boolean, Schema, Schema) - Constructor for class uk.ac.bbk.dcs.automed.evolution2.schemaEvolution.ExtensionalSchemaEvolution
 
EXTRACT_USING_DOM - Static variable in class uk.ac.bbk.dcs.automed.xml.wrappers.XMLWrapperFactory
 
EXTRACT_USING_DTD - Static variable in class uk.ac.bbk.dcs.automed.xml.wrappers.XMLWrapperFactory
 
EXTRACT_USING_SAX - Static variable in class uk.ac.bbk.dcs.automed.xml.wrappers.XMLWrapperFactory
 
EXTRACT_USING_XML_SCHEMA - Static variable in class uk.ac.bbk.dcs.automed.xml.wrappers.XMLWrapperFactory
 
extractXMLDSSDOM(XMLWrapperFactory, Document) - Static method in class uk.ac.bbk.dcs.automed.xml.wrappers.XMLDSSDOM
Creates the XMLDSS of the instanceDoc.
extSchemas - Variable in class uk.ac.ic.doc.automed.editor.IQLTool
 
extSchemasInUse - Variable in class uk.ac.ic.doc.automed.editor.IQLTool
 

F

factoryInUse - Variable in class uk.ac.ic.doc.automed.wrappers.AutoMedWrapperFactory
 
FAIL - Static variable in class uk.ac.ic.doc.automed.p2p.protocol.P2PConstants
performative
FailedOperationException - Exception in uk.ac.ic.doc.automed.p2p
 
FailedOperationException() - Constructor for exception uk.ac.ic.doc.automed.p2p.FailedOperationException
 
FailedOperationException(String) - Constructor for exception uk.ac.ic.doc.automed.p2p.FailedOperationException
 
FailedOperationException(Throwable) - Constructor for exception uk.ac.ic.doc.automed.p2p.FailedOperationException
 
FailedOperationException(String, Throwable) - Constructor for exception uk.ac.ic.doc.automed.p2p.FailedOperationException
 
FailReplyException - Exception in uk.ac.ic.doc.automed.p2p
 
FailReplyException() - Constructor for exception uk.ac.ic.doc.automed.p2p.FailReplyException
 
FailReplyException(String, String) - Constructor for exception uk.ac.ic.doc.automed.p2p.FailReplyException
 
FailReplyException(AbstractMessage) - Constructor for exception uk.ac.ic.doc.automed.p2p.FailReplyException
 
FATAL_ERROR - Static variable in interface uk.ac.ic.doc.automed.xml.XMLifyConstants
 
fatalError(SAXParseException) - Method in class uk.ac.ic.doc.automed.xml.XMLReader
 
features - Static variable in class uk.ac.ic.doc.automed.matching.modules.bidirectionalmap.StatisticsModule
The special characters that are examined in the elements' instances
features - Static variable in class uk.ac.ic.doc.automed.matching.modules.intervals.StatisticsModule
The special characters that are examined in the elements' instances
features - Static variable in class uk.ac.ic.doc.automed.matching.modules.probability.binary.StatisticsModule
The special characters that are examined in the elements' instances
features - Static variable in class uk.ac.ic.doc.automed.matching.modules.probability.senary.StatisticsModule
The special characters that are examined in the elements' instances
features - Static variable in class uk.ac.ic.doc.automed.matching.SchemaElement
 
Field - Class in uk.ac.ic.doc.automed.p2p.tree
 
Field(String, Value) - Constructor for class uk.ac.ic.doc.automed.p2p.tree.Field
 
FIELD - Static variable in class uk.ac.ic.doc.automed.p2p.tree.TreeNode
 
FIELD - Static variable in class uk.ac.ic.doc.automed.wrappers.SQLQuery
 
FIELD_ALIAS - Static variable in class uk.ac.ic.doc.automed.wrappers.SQLQuery
Define an alias of a table.
FIELD_TYPE_AUTOMEDQUERY - Static variable in class uk.ac.ic.doc.automed.wrappers.AutoMedQuery
A field that can hold a AutoMedQuery
FIELD_TYPE_INTEGER - Static variable in class uk.ac.ic.doc.automed.wrappers.AutoMedQuery
A field that can hold an Integer constant
FIELD_TYPE_INTEGER - Static variable in class uk.ac.ic.doc.automed.wrappers.SchemeQuery
A field that can hold an Integer constant
FIELD_TYPE_ONE_OR_MORE - Static variable in class uk.ac.ic.doc.automed.wrappers.AutoMedQuery
Used when the previous field type may be repeated any number of times.
FIELD_TYPE_ONE_OR_MORE - Static variable in class uk.ac.ic.doc.automed.wrappers.SchemeQuery
Used when the previous field type may be repeated any number of times.
FIELD_TYPE_SCHEMEQUERY - Static variable in class uk.ac.ic.doc.automed.wrappers.SchemeQuery
A field that can hold a SchemeQuery
FIELD_TYPE_STRING - Static variable in class uk.ac.ic.doc.automed.wrappers.AutoMedQuery
A field that can hold a String constant
FIELD_TYPE_STRING - Static variable in class uk.ac.ic.doc.automed.wrappers.SchemeQuery
A field that can hold a String constant
fields - Variable in class uk.ac.ic.doc.automed.util.db.DBRecord
 
FILE - Static variable in class uk.ac.ic.doc.automed.util.LogOutputHandler
Print log messages to file
fileMenu - Variable in class uk.ac.ic.doc.automed.editor.Gui
 
filePath - Static variable in class uk.ac.bbk.dcs.automed.xml.experiments.subclass.AlgoPerfExp
 
filePath - Static variable in class uk.ac.bbk.dcs.automed.xml.experiments.thesis.AlgoPerfExp
 
FillBuff() - Method in class uk.ac.bbk.dcs.automed.qproc.annotate.grammars.schemes.SimpleCharStream
 
FillBuff() - Method in class uk.ac.bbk.dcs.automed.qproc.annotate.grammars.simpleComp.SimpleCharStream
 
FillBuff() - Method in class uk.ac.bbk.dcs.automed.qproc.annotate.grammars.simpleCompAppend.SimpleCharStream
 
FillBuff() - Method in class uk.ac.bbk.dcs.automed.qproc.annotate.grammars.simpleCompAppendMonus.SimpleCharStream
 
FillBuff() - Method in class uk.ac.bbk.dcs.automed.qproc.translators.xquery.SimpleCharStream
 
fillDiamond(Graphics2D, int, int, int, int) - Static method in class uk.ac.ic.doc.automed.editor.DefaultDrawLinkVertex
 
Filter - Class in uk.ac.ic.doc.automed.matching
The class that represents the Filter component in the schema matching architecture.
Filter(SchemaElement[], SchemaElement[]) - Constructor for class uk.ac.ic.doc.automed.matching.Filter
Constructs the Filter.
Filter(SchemaElementPair[]) - Constructor for class uk.ac.ic.doc.automed.matching.Filter
Constructs the Filter.
filter(Serializable) - Method in class uk.ac.ic.doc.automed.p2p.overlay.QueryFilter
Implement interface EntryFilter
filter(Set) - Method in class uk.ac.ic.doc.automed.p2p.overlay.QueryFilter
 
finalize() - Method in class uk.ac.bbk.dcs.automed.qproc.evaluate.Evaluator
 
finalize() - Method in class uk.ac.bbk.dcs.automed.qproc.functions.BuiltInFunction
 
finalize() - Method in class uk.ac.bbk.dcs.automed.qproc.FunctionTable
 
finalize() - Method in class uk.ac.bbk.dcs.automed.qproc.iql.ASG
 
finalize() - Method in class uk.ac.bbk.dcs.automed.qproc.iql.Cell
 
finalize() - Method in class uk.ac.bbk.dcs.automed.qproc.OldQueryProcessor
 
finalize() - Method in class uk.ac.bbk.dcs.automed.qproc.optimise.ExperimentalOptimisationProvider
 
finalize() - Method in class uk.ac.bbk.dcs.automed.qproc.optimise.FoldFunction
 
finalize() - Method in class uk.ac.bbk.dcs.automed.qproc.optimise.FoldFunctionTable
 
finalize() - Method in class uk.ac.bbk.dcs.automed.qproc.optimise.FoldNilRule
 
finalize() - Method in class uk.ac.bbk.dcs.automed.qproc.optimise.optimisers.CollectionOperatorReorganiser
 
finalize() - Method in class uk.ac.bbk.dcs.automed.qproc.optimise.optimisers.ConstantSimplification
 
finalize() - Method in class uk.ac.bbk.dcs.automed.qproc.optimise.PatternRule
 
finalize() - Method in class uk.ac.bbk.dcs.automed.qproc.optimise.StandardOptimisationProvider
 
finalize() - Method in class uk.ac.bbk.dcs.automed.qproc.reformulate.GAVQueryReformulationProvider
 
finalize() - Method in class uk.ac.ic.doc.automed.editor.Gui.EditorFrame
 
finalize() - Method in class uk.ac.ic.doc.rodex.p2p.Peer
 
findAllPaths(Schema, Schema) - Method in class uk.ac.ic.doc.automed.reps.pathway.DefaultPathwayFinder
Find all pathways
findAllPaths(Schema, Schema) - Method in interface uk.ac.ic.doc.automed.reps.pathway.PathwayFinder
Find all pathways
findAllPathwayAbstractions(Schema) - Method in class uk.ac.ic.doc.automed.reps.Schema
Find abstractions of all transformation pathways from this schema to another schema
findAllPathways(Schema, Schema) - Static method in class uk.ac.ic.doc.automed.reps.Pathway
Return all possible pathways to a data source
findAllPathways(Schema, Schema) - Static method in class uk.ac.ic.doc.automed.reps.PathwayAbstraction
Override parent's method to return a List of PathwayAbstraction objects instead
findAllPathways(Schema) - Method in class uk.ac.ic.doc.automed.reps.Schema
 
findAtomicRelationships(SchemaObject[], SchemaObject[]) - Method in class uk.ac.ic.doc.automed.matching.RelationshipExtractor
Returns the semantic relationships between the atomic schema element pairs defined by the schema object arrays.
findAtomicRelationships(SchemaObject, SchemaObject[]) - Method in class uk.ac.ic.doc.automed.matching.RelationshipExtractor
Returns a SchemaElementPairRelationship array for the specified schema objects.
findAttachedDataSources() - Method in class uk.ac.ic.doc.automed.reps.Schema
Deprecated. Use Schema.getAttachedSchemas(int) instead. Returns an array of Schema's that are connected to this schema by some transformation pathway and are data sources (including this schema itself if it is a data source). For each schema s returned, s.isDataSource() is true.
findAttachedExtDBs() - Method in class uk.ac.ic.doc.automed.reps.Schema
Deprecated. Use Schema.getAttachedSchemas(int) instead. Returns an array of Schema's that are connected to this schema by some transformation pathway and have extensional data (including this schema itself if it has extensional data). For each schema s returned, s.isExtDB() is true.
findAttachedExtSchemas() - Method in class uk.ac.ic.doc.automed.reps.Schema
Deprecated. Use Schema.getAttachedSchemas(int) instead. Returns an array of Schema's that are connected to this schema by some transformation pathway and are extensional schemas (including this schema itself if it is an extensional schema). For each schema s returned, s.isExtSchema() is true.
findAutoLayoutPositionableFor(Positionable) - Static method in class uk.ac.ic.doc.automed.editor.autolayout.AutoLayoutPositionable
Find AutoLayout* object that represent SchemaObject.
findAutoMedFile(String, String) - Static method in class uk.ac.ic.doc.automed.Util
 
findFile(String, String) - Static method in class uk.ac.ic.doc.automed.Util
Returns a URL for the given name using several methods to make it useful for locating configuration files, resources etc.
findmax(Cell) - Method in class uk.ac.bbk.dcs.automed.qproc.functions.collections.Max
 
findmin(Cell) - Method in class uk.ac.bbk.dcs.automed.qproc.functions.collections.Min
 
findObjByLabel(String) - Static method in class uk.ac.ic.doc.automed.editor.autolayout.AutoLayoutTreeObject
 
findPath(Node, Node, LinkedList, LinkedList) - Static method in class uk.ac.bbk.dcs.automed.xml.utilities.XMLUtilities
IMPORTANT: Both goingUpPath and goingDownPath lists contain the common ancestor.
findPath(XMLDSSGraphElement, XMLDSSGraphElement, LinkedList, LinkedList) - Method in class uk.ac.bbk.dcs.automed.xml.xmldssGraph.XMLDSSGraph
IMPORTANT: Both goingUpPath and goingDownPath lists contain the common ancestor.
findRelated(SchemaObject[], SchemaObject[], SemanticRelationship, boolean) - Method in class uk.ac.ic.doc.automed.matching.Integrator
Returns a list of SchemaElementPair arrays with all the combinations of related schema elements.
findRoot() - Method in class uk.ac.ic.doc.automed.editor.autolayout.AutoLayoutTreeObject
Find object which label = "root$1"
findShortestPath(Schema, Schema) - Method in class uk.ac.ic.doc.automed.reps.pathway.DefaultPathwayFinder
Find optimal pathways
findShortestPath(Schema, Schema) - Method in interface uk.ac.ic.doc.automed.reps.pathway.PathwayFinder
Find optimal pathways
findShortestPath(Schema) - Method in class uk.ac.ic.doc.automed.reps.Schema
Returns an array of schemas such that: There is a transformation between each pair of adjacent schamas.
findShortestPathway(String, String) - Static method in class uk.ac.ic.doc.automed.reps.Pathway
 
findShortestPathway(Schema, Schema) - Static method in class uk.ac.ic.doc.automed.reps.Pathway
Find the shortest path containing the fewest number of steps between two schemas.
firstCharKeyword - Static variable in class uk.ac.ic.doc.automed.reps.Syntax.Token
 
FIRSTPASS - Static variable in interface uk.ac.ic.doc.automed.xml.XMLifyConstants
 
Flatmap - Class in uk.ac.bbk.dcs.automed.qproc.functions.collections
 
Flatmap() - Constructor for class uk.ac.bbk.dcs.automed.qproc.functions.collections.Flatmap
 
flattenSchemes(Object[]) - Static method in class uk.ac.ic.doc.automed.STR
Converts an Object array representation of a schema object's scheme into a String representation.
FLexer - Class in uk.ac.bbk.dcs.automed.qproc.iql
 
FLexer(Reader) - Constructor for class uk.ac.bbk.dcs.automed.qproc.iql.FLexer
 
FLexer(InputStream) - Constructor for class uk.ac.bbk.dcs.automed.qproc.iql.FLexer
 
FLOAT - Static variable in class uk.ac.ic.doc.automed.wrappers.AutoMedQuery
 
FLOAT - Static variable in class uk.ac.ic.doc.automed.wrappers.AutoMedType
Type to represent a floating point atomic type
FLOAT_TOKEN - Static variable in class uk.ac.ic.doc.automed.wrappers.AutoMedQuery
 
FloatToken - Static variable in class uk.ac.bbk.dcs.automed.qproc.iql.QSym
 
floatType - Static variable in class uk.ac.bbk.dcs.automed.qproc.iql.Cell
 
floatValue() - Method in class uk.ac.ic.doc.automed.wrappers.AutoMedFloat
Return the value of this AutoMedFloat as an float
FlushTimeHelper - Class in uk.ac.ic.doc.automed.p2p.directory
 
FlushTimeHelper(Queue, P2PDirectory, HoldTimeHelper) - Constructor for class uk.ac.ic.doc.automed.p2p.directory.FlushTimeHelper
Creates a new instance of HoldTimeHelper
FLWRExpression() - Method in class uk.ac.bbk.dcs.automed.qproc.translators.xquery.XQuery2IQL
 
fm - Static variable in class uk.ac.ic.doc.automed.editor.DrawArc
 
fm - Static variable in class uk.ac.ic.doc.automed.editor.DrawVertex
 
FoldFunction - Class in uk.ac.bbk.dcs.automed.qproc.optimise
 
FoldFunction(String, int, String, String, String) - Constructor for class uk.ac.bbk.dcs.automed.qproc.optimise.FoldFunction
 
FoldFunction(String, int, String) - Constructor for class uk.ac.bbk.dcs.automed.qproc.optimise.FoldFunction
 
FoldFunctionTable - Class in uk.ac.bbk.dcs.automed.qproc.optimise
 
FoldFunctionTable() - Constructor for class uk.ac.bbk.dcs.automed.qproc.optimise.FoldFunctionTable
 
Foldl - Class in uk.ac.bbk.dcs.automed.qproc.functions.collections
 
Foldl() - Constructor for class uk.ac.bbk.dcs.automed.qproc.functions.collections.Foldl
 
FoldNilRule - Class in uk.ac.bbk.dcs.automed.qproc.optimise
 
FoldNilRule(FoldFunctionTable) - Constructor for class uk.ac.bbk.dcs.automed.qproc.optimise.FoldNilRule
 
Foldr - Class in uk.ac.bbk.dcs.automed.qproc.functions.collections
 
Foldr() - Constructor for class uk.ac.bbk.dcs.automed.qproc.functions.collections.Foldr
 
FOR - Static variable in interface uk.ac.bbk.dcs.automed.qproc.translators.xquery.XQuery2IQLConstants
 
FOREIGN_KEY - Static variable in class uk.ac.ic.doc.automed.wrappers.SQLWrapperFactory
A feature option to model foreign keys in any Schema the factory generates
Forest - Class in uk.ac.bbk.dcs.automed.graph
Class that abstracts the structure of a forest.
Forest() - Constructor for class uk.ac.bbk.dcs.automed.graph.Forest
 
forestToTree() - Method in class uk.ac.bbk.dcs.automed.graph.Forest
This method adds a generic root node to the forest and adds the trees' roots as children to the generic root node.
forExpr(HashMap) - Method in class uk.ac.bbk.dcs.automed.qproc.translators.xquery.XQuery2IQL
 
format(LogRecord) - Method in class uk.ac.bbk.dcs.automed.qproc.GQPFormatter
 
FormatConversionIPI - Class in uk.ac.bbk.dcs.automed.xml.experiments.ws
 
FormatConversionIPI() - Constructor for class uk.ac.bbk.dcs.automed.xml.experiments.ws.FormatConversionIPI
 
formattedString(ASG) - Static method in class uk.ac.bbk.dcs.automed.qproc.iql.ASG
Deprecated. Functionality same as toString().
formattedString(Cell) - Static method in class uk.ac.bbk.dcs.automed.qproc.iql.ASG
Deprecated. Functionality same as toString().
formattedString() - Method in class uk.ac.bbk.dcs.automed.qproc.iql.ASG
Given that the ASG represents a list the string returned has each element separated by carriage returns for more legible output.
forVariable(HashMap) - Method in class uk.ac.bbk.dcs.automed.qproc.translators.xquery.XQuery2IQL
 
forwardButton - Variable in class uk.ac.ic.doc.automed.editor.IQLTool
 
FOUND_NWK_HANDLER_FLAG - Static variable in class uk.ac.ic.doc.automed.p2p.Constants
A single-element byte array returned by RequestListener.handleEvent() method when the message that the listener receives is in fact meant for it
FragmentProcessor - Class in uk.ac.bbk.dcs.automed.qproc.annotate
The purpose of this class is to replace all schemes with wrapper objects.
FragmentProcessor() - Constructor for class uk.ac.bbk.dcs.automed.qproc.annotate.FragmentProcessor
 
FragmentProcessor(Schema[]) - Constructor for class uk.ac.bbk.dcs.automed.qproc.annotate.FragmentProcessor
Deprecated. use FragmentProcessor.FragmentProcessor() instead
frame - Variable in class uk.ac.ic.doc.automed.editor.Gui
 
frame - Static variable in class uk.ac.ic.doc.automed.matching.modules.AbstractModule
 
FROM - Static variable in class uk.ac.ic.doc.automed.wrappers.SQLQuery
The first field can contain a SQLQuery WHERE
FROM_SCHEMA - Static variable in class uk.ac.ic.doc.automed.p2p.protocol.P2PConstants
 
fromASG(ASG) - Static method in class uk.ac.bbk.dcs.automed.qproc.iql.ASG
Returns the text IQL of g.
fromASG(Cell) - Static method in class uk.ac.bbk.dcs.automed.qproc.iql.ASG
Returns the text IQL of the abstract syntax graph of which n is the root.
fromASGCollection(ASG) - Static method in class uk.ac.bbk.dcs.automed.qproc.iql.ASG
If g represents a list/set/bag this returns an ArrayList of its Cells.
fromASGCollection(Cell) - Static method in class uk.ac.bbk.dcs.automed.qproc.iql.ASG
If n is the root of an ASG that represents a list, this returns an ArrayList of its Cells.
fromASGList(ASG) - Static method in class uk.ac.bbk.dcs.automed.qproc.iql.ASG
If g represents a list this returns an ArrayList of its Cells.
fromASGList(Cell) - Static method in class uk.ac.bbk.dcs.automed.qproc.iql.ASG
If n is the root of an ASG that represents a list, this returns an ArrayList of its Cells.
fromASGTuple(ASG) - Static method in class uk.ac.bbk.dcs.automed.qproc.iql.ASG
If g represents a tuple this returns an ArrayList of its Cells.
fromASGTuple(Cell) - Static method in class uk.ac.bbk.dcs.automed.qproc.iql.ASG
If n is the root of an ASG that represents a tuple, this returns an ArrayList of its Cells.
fromSchema - Variable in class uk.ac.ic.doc.automed.p2p.protocol.Request.Pathway
 
FSym - Class in uk.ac.bbk.dcs.automed.qproc.iql
CUP generated class containing symbol constants.
FSym() - Constructor for class uk.ac.bbk.dcs.automed.qproc.iql.FSym
 
function - Static variable in class uk.ac.bbk.dcs.automed.qproc.iql.Cell
 
Function - Static variable in class uk.ac.bbk.dcs.automed.qproc.iql.EnvSym
 
FUNCTION - Static variable in interface uk.ac.bbk.dcs.automed.qproc.translators.xquery.XQuery2IQLConstants
 
FunctionTable - Class in uk.ac.bbk.dcs.automed.qproc
A FunctionTable contains the pairs (IQL function name) - (Java class implementing IQL function)
FunctionTable() - Constructor for class uk.ac.bbk.dcs.automed.qproc.FunctionTable
 

G

GAVQueryReformulationProvider - Class in uk.ac.bbk.dcs.automed.qproc.reformulate
The query reformulator accepts an IQL query on the source schema and rewrites it in terms of constructs of the target schemata.
GAVQueryReformulationProvider() - Constructor for class uk.ac.bbk.dcs.automed.qproc.reformulate.GAVQueryReformulationProvider
 
GAVQueryReformulationProvider(Schema, Schema[]) - Constructor for class uk.ac.bbk.dcs.automed.qproc.reformulate.GAVQueryReformulationProvider
Deprecated. use GAVQueryReformulationProvider.GAVQueryReformulationProvider(Schema, Schema[], QueryProcessorConfiguration) instead
GAVQueryReformulationProvider(Schema, Schema[], QueryProcessorConfiguration) - Constructor for class uk.ac.bbk.dcs.automed.qproc.reformulate.GAVQueryReformulationProvider
 
GAVViewMap - Class in uk.ac.bbk.dcs.automed.qproc.reformulate
Class containing GAV composite views between a single source schema and a single target schema.
GAVViewMap(Schema, Schema, QueryProcessorConfiguration) - Constructor for class uk.ac.bbk.dcs.automed.qproc.reformulate.GAVViewMap
This constructor is called from CompositeViewMap class getInstance() method.
GenerateElemUID - Class in uk.ac.bbk.dcs.automed.xml.functions
Function that produces element UIDs based on the two arguments passed to the function.
GenerateElemUID() - Constructor for class uk.ac.bbk.dcs.automed.xml.functions.GenerateElemUID
 
GenerateElemUIDOffSet - Class in uk.ac.bbk.dcs.automed.xml.functions
Function that produces element UIDs based on the two arguments passed to the function.
GenerateElemUIDOffSet() - Constructor for class uk.ac.bbk.dcs.automed.xml.functions.GenerateElemUIDOffSet
 
generateGID - Class in uk.ac.ic.doc.automed.wrappers.ssdfunctions
 
generateGID() - Constructor for class uk.ac.ic.doc.automed.wrappers.ssdfunctions.generateGID
 
GenerateNestLists - Class in uk.ac.bbk.dcs.automed.xml.functions
Class Task Description
GenerateNestLists() - Constructor for class uk.ac.bbk.dcs.automed.xml.functions.GenerateNestLists
 
generateParseException() - Method in class uk.ac.bbk.dcs.automed.qproc.annotate.grammars.schemes.Schemes
 
generateParseException() - Method in class uk.ac.bbk.dcs.automed.qproc.annotate.grammars.simpleComp.SimpleComp
 
generateParseException() - Method in class uk.ac.bbk.dcs.automed.qproc.annotate.grammars.simpleCompAppend.SimpleCompAppend
 
generateParseException() - Method in class uk.ac.bbk.dcs.automed.qproc.annotate.grammars.simpleCompAppendMonus.SimpleCompAppendMonus
 
generateParseException() - Method in class uk.ac.bbk.dcs.automed.qproc.translators.xquery.XQuery2IQL
 
generateSID - Class in uk.ac.ic.doc.automed.wrappers.ssdfunctions
 
generateSID() - Constructor for class uk.ac.ic.doc.automed.wrappers.ssdfunctions.generateSID
 
generators - Variable in class uk.ac.bbk.dcs.automed.qproc.iql.ASGComprehension
 
generatorsFromXPath(String, String, HashMap, Document) - Static method in class uk.ac.bbk.dcs.automed.xml.utilities.UIDUtility
 
genericRoot - Static variable in class uk.ac.bbk.dcs.automed.xml.materialisation.Materialiser
 
genericRoot - Static variable in class uk.ac.bbk.dcs.automed.xml.materialisation.XMLDSSMaterialiser
 
genericRootName - Static variable in class uk.ac.bbk.dcs.automed.graph.Forest
 
get(int) - Method in class uk.ac.ic.doc.automed.matching.modules.bidirectionalmap.Vectors
 
get(int) - Method in class uk.ac.ic.doc.automed.reps.Pathway
Returns the Schema at the given index of the pathway.
get(PersistentKey) - Method in class uk.ac.ic.doc.automed.util.db.QueryCacheSQLAdapter
Get the first (or unique) data entry found for key
get(PersistentKey) - Method in class uk.ac.ic.doc.automed.util.persist.PersistentDB
Get the first (or unique) data entry found for key
get(PersistentKey) - Method in interface uk.ac.ic.doc.automed.util.persist.PersistentHandler
Get the first (or unique) data entry found for key
get(ID) - Method in class uk.ac.ic.doc.rodex.p2p.Peer
Get a set of values from the overlay network for ID
get(String) - Method in class uk.ac.ic.doc.rodex.p2p.Peer
Get a set of values from the overlay network for a String ID
get(ID, ASG) - Method in class uk.ac.ic.doc.rodex.p2p.Peer
Get a set of values from the overlay network for ID
get1stItems(ASG) - Static method in class uk.ac.bbk.dcs.automed.dataWarehousing.util.Tools4DW
 
getAbsoluteDegrees(ArrayList, ArrayList) - Static method in class uk.ac.ic.doc.automed.matching.modules.bidirectionalmap.ClustererClassifier
 
getAbsolutePosition() - Method in class uk.ac.ic.doc.automed.editor.autolayout.AutoLayoutSchemaObject
 
getAbsolutePosition() - Method in interface uk.ac.ic.doc.automed.editor.Positionable
Return the absolute coordinate of this .
getAbsolutePosition() - Method in class uk.ac.ic.doc.automed.reps.Construct
Same behaviour as Construct.getPosition() since Construct instances are not placed relative to other Positionables.
getAbsolutePosition() - Method in class uk.ac.ic.doc.automed.reps.Model
Same behaviour as Model.getPosition() since Model instances are not placed relative to other Positionables.
getAbsolutePosition() - Method in class uk.ac.ic.doc.automed.reps.Network
Same behaviour as Network.getPosition() since Network instances are not placed relative to other Positionables.
getAbsolutePosition() - Method in class uk.ac.ic.doc.automed.reps.Schema
Same behaviour as Schema.getPosition() since Schema instances are not placed relative to other Positionables.
getAbsolutePosition() - Method in class uk.ac.ic.doc.automed.reps.SchemaObject
 
getAbstractMessage() - Method in interface uk.ac.ic.doc.automed.p2p.messages.applicationlayer.ApplicationMessage
 
getAbstractMessage() - Method in class uk.ac.ic.doc.automed.p2p.messages.applicationlayer.BrokerAllQuery
 
getAbstractMessage() - Method in class uk.ac.ic.doc.rodex.p2p.messages.applicationlayer.HelloMsg
Return the actual message
getAbstractMessage() - Method in class uk.ac.ic.doc.rodex.p2p.messages.applicationlayer.SchemaAdvertMsg
Return the actual message
getAbstractMessage() - Method in class uk.ac.ic.doc.rodex.p2p.messages.applicationlayer.SchemaRegMsg
Return the actual message
getAccessMethod(int) - Static method in class uk.ac.ic.doc.automed.reps.AccessMethod
Returns the AccessMethod held with the given identifier in in the STR.
getAccessMethod() - Method in class uk.ac.ic.doc.automed.wrappers.AutoMedWrapper
Returns the AccessMethod associated with this wrapper, which holds the details of the datasource being wrapped.
getAccessMethodAWFFeatures(int) - Static method in class uk.ac.ic.doc.automed.STR
Returns the feature settings of the specified access method.
getAccessMethodBySID(int) - Static method in class uk.ac.ic.doc.automed.STR
Returns all the access method identifiers (AMID) that point to the access methods for the specified schema.
getAccessMethodDBDriver(int) - Static method in class uk.ac.ic.doc.automed.STR
Returns the database driver of the specified access method.
getAccessMethodPassword(int) - Static method in class uk.ac.ic.doc.automed.STR
Returns the password of the specified access method.
getAccessMethodPID(int) - Static method in class uk.ac.ic.doc.automed.STR
Returns the protocol identifier (PID) of the specified access method.
getAccessMethodProperty(int, String) - Static method in class uk.ac.ic.doc.automed.STR
Access Method Property
getAccessMethods() - Method in class uk.ac.ic.doc.automed.reps.Schema
Find the AccessMethods that may be used to access the physical database system that holds this Schema.
getAccessMethodSID(int) - Static method in class uk.ac.ic.doc.automed.STR
Returns the schema identifier (SID) to which the specified access method connects.
getAccessMethodURL(int) - Static method in class uk.ac.ic.doc.automed.STR
Returns the URL of the specified access method.
getAccessMethodUsername(int) - Static method in class uk.ac.ic.doc.automed.STR
Returns the username of the specified access method.
getAccessMethodWrapper(int) - Static method in class uk.ac.ic.doc.automed.STR
Returns the feature settings of the specified access method.
getAccompanyingSchemaRootName() - Method in class uk.ac.bbk.dcs.automed.xml.wrappers.XMLWrapperFactory
 
getAccompanyingSchemaURI() - Method in class uk.ac.bbk.dcs.automed.xml.wrappers.XMLWrapperFactory
 
getAction() - Method in class uk.ac.bbk.dcs.automed.dataWarehousing.dlt.TransfStep
 
getAction() - Method in class uk.ac.ic.doc.automed.p2p.directory.PeerEvent
 
getAction() - Method in class uk.ac.ic.doc.automed.p2p.directory.SchemaEvent
 
getAction() - Method in class uk.ac.ic.doc.automed.tml.TML
 
getActionFrom(Schema) - Method in class uk.ac.ic.doc.automed.reps.Transformation
Returns the action of the transformation.
getActionName() - Method in class uk.ac.ic.doc.automed.reps.Transformation
Return this transformation's action name
getActionNameFrom(Schema) - Method in class uk.ac.ic.doc.automed.reps.Transformation
 
getActionNameTo(Schema) - Method in class uk.ac.ic.doc.automed.reps.Transformation
 
getActionNumber(String) - Static method in class uk.ac.ic.doc.automed.reps.Transformation
Return an action number from its name
getActionString(int) - Static method in class uk.ac.ic.doc.automed.reps.Transformation
 
getActionString() - Method in class uk.ac.ic.doc.automed.tml.TML
 
getActionTo(Schema) - Method in class uk.ac.ic.doc.automed.reps.Transformation
Returns the action of the transformation.
getAdded() - Method in class uk.ac.ic.doc.automed.wrappers.xsdomobject.ComplexType
Get whether or not this has been added to the AutoMed Schema
getAddress() - Method in class uk.ac.ic.doc.rodex.p2p.messages.applicationlayer.HelloMsg
Peer's IP address
getAdjacent() - Method in class uk.ac.ic.doc.automed.reps.Node
Returns all nodes that are adjacent to this node - that is, nodes for which a transformation is defined between its schema and this node's schema.
getAdvertiseRequest(String, String, String, Map) - Static method in class uk.ac.ic.doc.automed.p2p.util.Util
 
getAgeTime() - Method in class uk.ac.ic.doc.automed.p2p.directory.PeerDescription
 
getAgeTime() - Method in class uk.ac.ic.doc.automed.p2p.directory.SchemaDescription
Calculate the schema's age time from last update time value
getAllCombinations(Object[], Object[]) - Method in class uk.ac.ic.doc.automed.matching.Integrator
 
getAllCombinations(Object[], Object[]) - Method in class uk.ac.ic.doc.automed.matching.RelationshipExtractor
 
getAllNodes() - Method in class uk.ac.ic.doc.automed.reps.Network
 
getAllObjInSchema() - Method in class uk.ac.ic.doc.automed.editor.autolayout.AutoLayoutSchemaObject
 
getAllPairs() - Method in class uk.ac.ic.doc.automed.matching.Filter
Returns an array of all schema element pairs, compatible and incompatible.
getAllPatternNames() - Static method in class uk.ac.ic.doc.automed.ssd.Pattern
 
getAllPatternNames() - Static method in class uk.ac.ic.doc.automed.SSMDR
Returns the vector of patterns'name
getAllPatterns(String) - Method in class uk.ac.ic.doc.automed.editor.PatternWritingTool
 
getAllPeers() - Method in class uk.ac.ic.doc.automed.p2p.directory.P2PDirectory
Get all peers from db
getAllPeers() - Method in class uk.ac.ic.doc.automed.p2p.directory.P2PDirectoryRepository
 
getAllProtocols() - Static method in class uk.ac.ic.doc.automed.STR
Returns the name of all the protocols found in the STR.
getAllPublicSchemas() - Method in class uk.ac.ic.doc.automed.p2p.MessageHandler
 
getAllReferencedSchemaObjects() - Method in class uk.ac.ic.doc.automed.reps.Transformation
Returns all the schema objects referenced in a transformation, including those referenced in its query.
The result of this method is the union of the results returned by the methods Transformation.getReferencedSchemaObjects() and Transformation.getReferencedSchemaObjectsInQuery().
getAllReferences() - Method in class uk.ac.ic.doc.automed.p2p.tree.AutoMedObject
 
getAllReferences() - Method in class uk.ac.ic.doc.automed.p2p.tree.ValueList
 
getAllResultObjects(Map, int) - Method in class uk.ac.ic.doc.automed.p2p.MessageHandler
 
getAllSchemaNames() - Static method in class uk.ac.ic.doc.automed.STR
Returns the name of all the schemas found in the STR.
getAllSchemeNames() - Method in class uk.ac.ic.doc.automed.reps.Schema
Returns an Object array of schemes of all the schema objects that belong to the schema.
getAllSchemeNames(boolean) - Method in class uk.ac.ic.doc.automed.reps.Schema
 
getAllSchemeNames(boolean, int, int) - Method in class uk.ac.ic.doc.automed.reps.Schema
 
getAllSchemeNames(boolean, int, int, boolean) - Method in class uk.ac.ic.doc.automed.reps.Schema
 
getAllSchemeNames(int) - Static method in class uk.ac.ic.doc.automed.STR
Returns an Object array of all objects' schemes of a schema.
getAllSchemeNamesString() - Method in class uk.ac.ic.doc.automed.reps.Schema
Returns the scheme representation (of type String) of the schemes of all the schema objects that belong to the schema.
getAllSchemeNamesString(boolean) - Method in class uk.ac.ic.doc.automed.reps.Schema
 
getAllSchemeNamesString(boolean, int, int) - Method in class uk.ac.ic.doc.automed.reps.Schema
 
getAllSchemeNamesString(boolean, int, int, boolean) - Method in class uk.ac.ic.doc.automed.reps.Schema
 
getAllSchemeNamesString(int) - Static method in class uk.ac.ic.doc.automed.STR
Returns the scheme representation (of type String) of all objects' schemes of a schema.
getAllSchemes() - Method in class uk.ac.ic.doc.rodex.qproc.ASGExplore
Get all ASG's cell scheme
getAllTrans() - Static method in class uk.ac.ic.doc.automed.reps.Transformation
 
getAllTuples(ASG) - Static method in class uk.ac.ic.doc.rodex.qproc.QueryResultProducer
Loop through the entire ASG list-type structure and covert its content into an List of rows, each row is a List object containing all tuple values
.
getAllTypes(int) - Static method in class uk.ac.ic.doc.automed.MDR
Get the complete rows of TypeHierarchy objects.
getAllValues() - Method in class uk.ac.ic.doc.automed.p2p.gui.PeerTableModel
 
getAllVarablesFromCell(Cell) - Static method in class uk.ac.bbk.dcs.automed.dataWarehousing.util.Tools4DW
 
getAMID() - Method in class uk.ac.ic.doc.automed.reps.AccessMethod
Returns the access method identifier (AMID).
getAMXMLDSS() - Method in class uk.ac.bbk.dcs.automed.xml.relational.XMLDSSFromRDB
This method first creates a network of tables, based on their foreign key dependencies.
getAnnotation() - Method in class uk.ac.bbk.dcs.automed.qproc.iql.Cell
 
getAnnotator() - Method in class uk.ac.bbk.dcs.automed.qproc.QueryProcessorConfiguration
Return the logical optimiser name
getAppearances() - Method in class uk.ac.ic.doc.automed.matching.Instance
Returns the number of appearances of the value of this instance.
getAppearances(String[], char) - Static method in class uk.ac.ic.doc.automed.matching.Util
 
getArcDrawable() - Method in class uk.ac.ic.doc.automed.reps.Construct
Returns the name of the class implementing drawable that should be used to draw arc elements of this construct.
getArgCID() - Method in class uk.ac.ic.doc.automed.reps.ConstructScheme
 
getArgConstruct() - Method in class uk.ac.ic.doc.automed.reps.ConstructScheme
Returns the Construct type of the ConstructScheme.
getArity() - Method in class uk.ac.bbk.dcs.automed.qproc.functions.BuiltInFunction
 
getArity(String) - Static method in class uk.ac.bbk.dcs.automed.qproc.iql.ReservedTokens
 
getArity() - Method in class uk.ac.bbk.dcs.automed.qproc.optimise.FoldFunction
 
getArray4List(String) - Static method in class uk.ac.bbk.dcs.automed.dataWarehousing.util.Tools4DW
 
getArray4List(ASG) - Static method in class uk.ac.bbk.dcs.automed.dataWarehousing.util.Tools4DW
 
getArrayList(Cell) - Static method in class uk.ac.bbk.dcs.automed.dataWarehousing.util.Tools4DW
 
getAsciiEscapeString(String) - Static method in class uk.ac.ic.doc.automed.xml.XMLSyntax
returns a String suitable for printing to standard out
getASG() - Method in class uk.ac.ic.doc.rodex.qproc.QueryAnalyser
The original ASG object of the represented view
getASGQuery() - Method in class uk.ac.ic.doc.rodex.qproc.QueryDescription
 
getASGRoot() - Method in class uk.ac.ic.doc.rodex.qproc.QueryAnalyser
 
getAskRequest(String, String, String, Map) - Static method in class uk.ac.ic.doc.automed.p2p.util.Util
 
getAsList() - Method in class uk.ac.ic.doc.automed.p2p.directory.ModelDescription
 
getAsList() - Method in interface uk.ac.ic.doc.automed.p2p.directory.P2PDirectoryObject
 
getAsList() - Method in class uk.ac.ic.doc.automed.p2p.directory.PeerDescription
 
getAsList() - Method in class uk.ac.ic.doc.automed.p2p.directory.SchemaDescription
 
getAsMap() - Method in class uk.ac.bbk.dcs.automed.wrappers.IQLTranslator
 
getAssociatedModels() - Method in class uk.ac.ic.doc.automed.reps.Pathway
Return all associated Models necessary to re-build the Schemas in
the pathway
getAtomicPairRelationships() - Method in class uk.ac.ic.doc.automed.matching.RelationshipExtractor
Returns the relationships of pairs of atomic schema elements.
getAtomicRelationship(SchemaElementPair) - Method in class uk.ac.ic.doc.automed.matching.RelationshipExtractor
Returns the relationship of the pair of atomic schema elements
getAtomicRelationshipCombinations(SchemaObject[], SchemaObject[]) - Method in class uk.ac.ic.doc.automed.matching.RelationshipExtractor
Returns a list of SchemaElementPairRelationship arrays for the specified schema objects.
getAttachedElements() - Method in class uk.ac.ic.doc.automed.matching.SchemaElement
 
getAttachedSchemas(int) - Method in class uk.ac.ic.doc.automed.reps.Schema
Returns an array of Schema's that are connected to this schema by some pathway.
getAttribute(String) - Method in class uk.ac.bbk.dcs.automed.xml.xmldssGraph.XMLDSSGraphElement
 
getAttribute(int) - Method in class uk.ac.ic.doc.automed.wrappers.AutoMedTuple
Return a particular attribute from a tuple (counting from one)
getAttributeDomains() - Method in class uk.ac.ic.doc.automed.reps.Schema
Return the attribute domain specifications
getAttributeDomains() - Method in class uk.ac.ic.doc.automed.wrappers.AutoMedWrapperFactory
Return the attribute domain specifications
getAttributeExtent(String, String) - Method in class uk.ac.bbk.dcs.automed.xml.materialisation.Materialiser
 
getAttributeExtent(String, String) - Method in class uk.ac.bbk.dcs.automed.xml.materialisation.XMLDSSMaterialiser
 
getAttributes() - Method in class uk.ac.bbk.dcs.automed.xml.xmldssGraph.XMLDSSGraphElement
 
getAttributeType(int) - Method in class uk.ac.ic.doc.automed.wrappers.AutoMedResult
Returns the type of an attribute in the tuple that the cursor currently points at.
getAttributeType(int) - Method in class uk.ac.ic.doc.automed.wrappers.AutoMedTuple
 
getAuthentication() - Method in class uk.ac.ic.doc.rodex.p2p.messages.applicationlayer.HelloMsg
Peer's authentication
getAutoID() - Method in class uk.ac.ic.doc.automed.util.cache.CacheItem
Return the current value of the auto-increment ID
getAutoMedFile(String, String) - Static method in class uk.ac.ic.doc.automed.Util
 
getAutoMedID(Node) - Static method in class uk.ac.bbk.dcs.automed.xml.utilities.UIDUtility
 
getAutoMedModel() - Method in class uk.ac.bbk.dcs.automed.hdmstore.HdmWrapperFactory
 
getAutoMedModel() - Method in class uk.ac.bbk.dcs.automed.xml.wrappers.XMLWrapperFactory
 
getAutoMedModel() - Method in class uk.ac.ic.doc.automed.wrappers.AutoMedWrapperFactory
Return the AutoMed oriented Model used to represent the Schema of the datasource.
getAutoMedModel() - Method in class uk.ac.ic.doc.automed.wrappers.CSVWrapperFactory
Return the AutoMed CSV model from the Automed MDR database In this case it is the same as the source model returned by getModel()
getAutoMedModel() - Method in class uk.ac.ic.doc.automed.wrappers.HDMWrapperFactory
Return the HDM model from the Automed MDR database
getAutoMedModel() - Method in class uk.ac.ic.doc.automed.wrappers.P2PWrapperFactory
Always the same as P2PWrapperFactory.getModel() for the P2PWrapperFactory.
getAutoMedModel() - Method in class uk.ac.ic.doc.automed.wrappers.SQLWrapperFactory
Return the AutoMed relational Model used to represent the Schema for the SQL datasource wrapper.
getAutoMedModel() - Method in class uk.ac.ic.doc.automed.wrappers.UMLWrapperFactory
Return the UML model from the Automed MDR database In this case it is the same as the source model returned by getModel()
getAutoMedModel() - Method in class uk.ac.ic.doc.automed.wrappers.XMLSchemaWrapperFactory
Return the XML Schema model from the Automed MDR database
getAutoMedModel() - Method in class uk.ac.ic.doc.automed.wrappers.YattaWrapperFactory
Return the AutoMed oriented Model, which is the same as the source oriented Model for the semistructured datasource
getAutoMedModelName() - Method in class uk.ac.ic.doc.automed.wrappers.AutoMedWrapperFactory
Find the name of the Model that will be used to represent an AutoMed oriented view of the data source.
getAutoMedObject(Reference) - Method in class uk.ac.ic.doc.automed.p2p.tree.CollectionSet
 
getAutoMedObject(Reference) - Method in class uk.ac.ic.doc.automed.p2p.tree.Root
 
getAutoMedObjects(List) - Method in class uk.ac.ic.doc.automed.p2p.tree.CollectionSet
 
getAutoMedObjects(List) - Method in class uk.ac.ic.doc.automed.p2p.tree.Root
Returns a list of AutoMedObject nodes that correspond to the list of References given as parameter.
getAutoMedPeer() - Static method in class uk.ac.ic.doc.automed.p2p.AutoMedPeer
Return the AutoMedPeer that represents the repository in the JVM on the P2P network.
getAutoMedPeer() - Method in class uk.ac.ic.doc.automed.p2p.gui.PeerApplication
Return the AutoMedPeer this application provides a UI for.
getAutoMedQueryToken() - Method in class uk.ac.ic.doc.automed.wrappers.AutoMedQuery
Return the AutoMedQueryToken of this node; ie the type of object query node represents.
getAutoMedTuple() - Method in class uk.ac.ic.doc.automed.wrappers.AutoMedResult
Return the tuple which the cursor current points at.
getAutoMedTuple(int) - Method in class uk.ac.ic.doc.automed.wrappers.AutoMedResult
Move the cursor and get the tuple that is at the point
getAutoMedWrapper(AccessMethod) - Static method in class uk.ac.ic.doc.automed.wrappers.AutoMedWrapper
Equivalent to calling newAutoMedWrapper(am,null)
getAutoMedWrapper(AccessMethod, String) - Static method in class uk.ac.ic.doc.automed.wrappers.AutoMedWrapper
Return the wrapper asspciated to a stored AccessMethod.
getAutoMedWrapperFactory() - Method in class uk.ac.ic.doc.automed.wrappers.AutoMedWrapper
Return the AutoMedWrapperFactory currently associated with this wrapper.
getAutoMedWrapperFactory() - Method in class uk.ac.ic.doc.automed.wrappers.CSVWrapper
 
getAutoMedWrapperFactory() - Method in class uk.ac.ic.doc.automed.wrappers.UMLWrapper
 
getAutoMedWrapperFactory() - Method in class uk.ac.ic.doc.automed.wrappers.XMLSchemaWrapper
 
getAutoMedWrapperFactoryFeatures() - Method in class uk.ac.ic.doc.automed.reps.AccessMethod
Returns the feature settings as used with associated AutoMedWrapperFactory
getAverage(double[]) - Static method in class uk.ac.ic.doc.automed.matching.Util
 
getAverageAppearances(String[], char) - Static method in class uk.ac.ic.doc.automed.matching.Util
 
getAverageFanOut(Document) - Static method in class uk.ac.bbk.dcs.automed.xml.utilities.XMLUtilities
 
getAverages() - Method in class uk.ac.ic.doc.automed.matching.SchemaElement
 
getBackgroundColor() - Method in interface uk.ac.ic.doc.automed.editor.Positionable
 
getBackgroundColor() - Method in class uk.ac.ic.doc.automed.reps.Construct
Return the default background colour to be used from drawing SchemaObjects of this Construct.
getBackgroundColor() - Method in class uk.ac.ic.doc.automed.reps.Model
Return the default background colour to be used from drawing SchemaObjects of this Model.
getBackgroundColor() - Method in class uk.ac.ic.doc.automed.reps.Network
 
getBackgroundColor() - Method in class uk.ac.ic.doc.automed.reps.Schema
 
getBackgroundColor() - Method in class uk.ac.ic.doc.automed.reps.SchemaObject
 
getBackwardDegree() - Method in class uk.ac.ic.doc.automed.matching.BidirectionalDegree
Returns the backward similarity degree.
getBaseType() - Method in class uk.ac.ic.doc.automed.wrappers.xsdomobject.ComplexType
Return whether or not this has been used as a subtype
getBaseTypeName() - Method in class uk.ac.ic.doc.automed.reps.TypeHierarchy.TypeObject
Get the name of the base type for this type object
getBeginColumn() - Method in class uk.ac.bbk.dcs.automed.qproc.annotate.grammars.schemes.SimpleCharStream
 
getBeginColumn() - Method in class uk.ac.bbk.dcs.automed.qproc.annotate.grammars.simpleComp.SimpleCharStream
 
getBeginColumn() - Method in class uk.ac.bbk.dcs.automed.qproc.annotate.grammars.simpleCompAppend.SimpleCharStream
 
getBeginColumn() - Method in class uk.ac.bbk.dcs.automed.qproc.annotate.grammars.simpleCompAppendMonus.SimpleCharStream
 
getBeginColumn() - Method in class uk.ac.bbk.dcs.automed.qproc.translators.xquery.SimpleCharStream
 
getBeginLine() - Method in class uk.ac.bbk.dcs.automed.qproc.annotate.grammars.schemes.SimpleCharStream
 
getBeginLine() - Method in class uk.ac.bbk.dcs.automed.qproc.annotate.grammars.simpleComp.SimpleCharStream
 
getBeginLine() - Method in class uk.ac.bbk.dcs.automed.qproc.annotate.grammars.simpleCompAppend.SimpleCharStream
 
getBeginLine() - Method in class uk.ac.bbk.dcs.automed.qproc.annotate.grammars.simpleCompAppendMonus.SimpleCharStream
 
getBeginLine() - Method in class uk.ac.bbk.dcs.automed.qproc.translators.xquery.SimpleCharStream
 
getBidirectionalDegrees(Hashtable, Hashtable) - Static method in class uk.ac.ic.doc.automed.matching.modules.AbstractModule
Returns a Hashtable of the bidirectional degrees.
getBidirectionalDegrees() - Method in class uk.ac.ic.doc.automed.matching.modules.AbstractModule
Returns an array of SimilarSchemaElementPair objects which define the bidirectional degrees between the pairs of schema elements.
getBidirectionalSimilarity(SchemaElementPair) - Method in class uk.ac.ic.doc.automed.matching.modules.AbstractModule
Returns a SimilarSchemaElementPair object which defines the bidirectional degrees for the specified SchemaElementPair
getBitString(int) - Static method in class uk.ac.ic.doc.automed.util.NumberToolkit
Get the bit string of an integer value
getBodyVars(List) - Method in class uk.ac.bbk.dcs.automed.qproc.iql.ASGComprehension
 
getBoundFields() - Method in class uk.ac.ic.doc.rodex.qproc.QueryVariable
Getter for bounded fields
getBoundFunctions() - Method in class uk.ac.ic.doc.rodex.qproc.QueryVariable
Getter for bound functions
getBounds() - Method in class uk.ac.ic.doc.automed.editor.autolayout.AutoLayout
 
getBounds() - Method in class uk.ac.ic.doc.automed.editor.DefaultDrawConstraintVertex
 
getBounds() - Method in class uk.ac.ic.doc.automed.editor.DefaultDrawLinkNodalVertex
 
getBounds() - Method in interface uk.ac.ic.doc.automed.editor.DrawableVertex
Describe the rectangular area within the EditorPanel where this Drawable vertex is to be painted.
getBounds() - Method in class uk.ac.ic.doc.automed.editor.DrawNetwork
 
getBounds() - Method in class uk.ac.ic.doc.automed.editor.DrawVertex
Implements getBounds() from Drawable
getBriefDateString() - Static method in class uk.ac.ic.doc.automed.util.DateUtil
Return a brief date string of current date
Example: 20/7/2006 1:1:1---> 20060720
getBufferSize() - Method in class uk.ac.ic.doc.automed.p2p.communication.AbstractDaemon
 
getBufferSize() - Method in class uk.ac.ic.doc.automed.xml.XMLReader
 
getBytes() - Method in class uk.ac.ic.doc.automed.p2p.messages.abstractlayer.AbstractMessage
Utility method to return message bytes
getBytesFromInputStream(InputStream, int) - Static method in class uk.ac.ic.doc.automed.p2p.util.Util
Get bytes array from an input stream
getCache() - Method in class uk.ac.bbk.dcs.automed.qproc.QueryProcessor
 
getCache() - Method in class uk.ac.ic.doc.automed.p2p.AutoMedPeer
Return the PeerCache that this AutoMedPeer keeps, containing data fetched form the P2PDirectory of other peers and public schemas.
getCachedQueries() - Method in class uk.ac.ic.doc.automed.qproc.cache.DefaultQueryCache
Return external queries of all cached items
getCachedQueries() - Method in interface uk.ac.ic.doc.automed.qproc.cache.IQueryCache
Return external queries of all cached items
getCacheMode() - Method in class uk.ac.ic.doc.rodex.qproc.QualityIndicator
 
getCachePolicy(String) - Static method in class uk.ac.ic.doc.automed.qproc.cache.CacheManager
 
getCachePolicy() - Method in class uk.ac.ic.doc.automed.qproc.eval.QueryEvaluationConfiguration
Accepts a list of input conditions and return the action
getCacheResultExpiredOK() - Method in class uk.ac.ic.doc.rodex.qproc.QualityIndicator
 
getCacheSource() - Method in class uk.ac.ic.doc.automed.wrappers.QueryCacheWrapper
Return the reference to the IQueryCache instance
getCacheStatus() - Method in class uk.ac.bbk.dcs.automed.qproc.QueryProcessorConfiguration
 
getCacheStatus() - Method in class uk.ac.ic.doc.rodex.qproc.QualityIndicator
 
getCardinality() - Method in class uk.ac.bbk.dcs.automed.qproc.iql.ASGTuple
 
getCause() - Method in exception uk.ac.ic.doc.automed.AutoMedException
Return the source exception
getCause() - Method in exception uk.ac.ic.doc.automed.RepositoryAccessException
 
getCause() - Method in exception uk.ac.ic.doc.automed.reps.AutoRepException
 
getCellAsString(Cell) - Static method in class uk.ac.ic.doc.rodex.qproc.ASGExplore
Added to return a string representation of a ASG's cell dmle 22/11/2005
getCellEditorValue() - Method in class uk.ac.ic.doc.automed.editor.TextEditor
Implement one method of AbstractCellEditor adapter class
getCellType(Cell) - Static method in class uk.ac.ic.doc.rodex.qproc.ASGExplore
Return the ASG cell's type name dmle 22/11/2005
getCentre() - Method in class uk.ac.ic.doc.automed.editor.DefaultDrawLinkNodalVertex
 
getCentre() - Method in interface uk.ac.ic.doc.automed.editor.DrawableVertex
Describe where the centre of the Drawable visually appears to a viewer.
getCentre() - Method in class uk.ac.ic.doc.automed.editor.DrawVertex
Describe where the centre of the Drawable visually appears to a viewer.
getCentreOffset() - Method in class uk.ac.ic.doc.automed.editor.DefaultDrawLinkNodalVertex
 
getCentreOffset() - Method in interface uk.ac.ic.doc.automed.editor.DrawableVertex
Describe where the centre of the Drawable visually appears to a viewer.
getCentreOffset() - Method in class uk.ac.ic.doc.automed.editor.DrawVertex
Implements getCentreOffset() from Drawable
getChild(Object) - Method in class uk.ac.ic.doc.automed.p2p.tree.TreeNode
 
getChild(String) - Method in class uk.ac.ic.doc.automed.wrappers.xsdomobject.ComplexType
Get a child element
getChildAttributes() - Method in class uk.ac.ic.doc.automed.wrappers.xsdomobject.ComplexType
Return any child attributes
getChildCount(Node) - Static method in class uk.ac.bbk.dcs.automed.xml.utilities.XMLUtilities
Counts the children of the given node.
getChildren() - Method in class uk.ac.bbk.dcs.automed.graph.TreeNode
 
getChildren() - Method in class uk.ac.bbk.dcs.automed.xml.xmldssGraph.XMLDSSGraphElement
 
getChildren() - Method in class uk.ac.ic.doc.automed.p2p.tree.MainObjectClasses
 
getChildren() - Method in class uk.ac.ic.doc.automed.p2p.tree.TreeNode
 
getChildren() - Method in class uk.ac.ic.doc.automed.p2p.tree.ValueList
 
getChildren() - Method in class uk.ac.ic.doc.automed.reps.Node
If the network this node belongs to is directed then returns all the adjacent nodes that are children of this node, otherwise its behaviour is defined by the type of network but the children will be a subset of adjacent.
getChildren() - Method in class uk.ac.ic.doc.automed.wrappers.xsdomobject.ComplexType
Return any child elements
getCID() - Method in class uk.ac.ic.doc.automed.reps.Construct
Returns the construct identifier (CID) of the construct.
getCID() - Method in class uk.ac.ic.doc.automed.reps.ConstructScheme
Other setter, getter methods
getClassCatalog() - Method in class uk.ac.ic.doc.automed.util.persist.PersistentDBController
The class datalog
getClasses() - Method in class uk.ac.ic.doc.automed.p2p.tree.MainObjectClasses
 
getClassName() - Method in exception uk.ac.ic.doc.automed.IntegrityException
Return the className of the object that the manipulation of caused this exception.
getClientInstance(RequestListener, String, int, String, Properties) - Static method in class uk.ac.ic.doc.automed.p2p.communication.ClientFactory
Create a new instance of communication client for a specific protocol
getClientInstance(RequestListener, String, Properties) - Static method in class uk.ac.ic.doc.automed.p2p.communication.ClientFactory
Create a new instance of communication client for a specific protocol.
getClockRepresentation(long) - Static method in class uk.ac.ic.doc.automed.util.DateUtil
Return a standard clock representation from the number of millisecs
getClockRepresentation(Date) - Static method in class uk.ac.ic.doc.automed.util.DateUtil
Return a standard clock representation of a Date object
getClockRepresentation(long[]) - Static method in class uk.ac.ic.doc.automed.util.DateUtil
Return a standard clock representation of a time value.
getCloseSchemeBracket() - Static method in class uk.ac.ic.doc.automed.reps.Schema
find what string is used to deliminate the closing of a scheme name, such as the ">>" in "<<person>>" or "<<person,name>>".
getCloseSchemeBracket() - Static method in class uk.ac.ic.doc.automed.STR
Return String used to close schemes
getClusters() - Method in class uk.ac.ic.doc.automed.matching.modules.bidirectionalmap.Clusterer
 
getCollectionClass() - Method in class uk.ac.ic.doc.automed.p2p.tree.ObjectCollection
 
getCollectionForClass(Class) - Method in class uk.ac.ic.doc.automed.p2p.tree.Root
 
getCollectionSize() - Method in class uk.ac.bbk.dcs.automed.qproc.iql.ASG
Usage intended only for CallToWrapper cache, to help decide between in-memory and on-disk caching
getCollectionSize() - Method in class uk.ac.bbk.dcs.automed.qproc.iql.ASGCollection
 
getCollectionType() - Method in class uk.ac.bbk.dcs.automed.qproc.iql.ASGCollection
 
getColType(Cell) - Static method in class uk.ac.bbk.dcs.automed.qproc.iql.ASG
 
getColumn() - Method in class uk.ac.bbk.dcs.automed.qproc.annotate.grammars.schemes.SimpleCharStream
Deprecated.  
getColumn() - Method in class uk.ac.bbk.dcs.automed.qproc.annotate.grammars.simpleComp.SimpleCharStream
Deprecated.  
getColumn() - Method in class uk.ac.bbk.dcs.automed.qproc.annotate.grammars.simpleCompAppend.SimpleCharStream
Deprecated.  
getColumn() - Method in class uk.ac.bbk.dcs.automed.qproc.annotate.grammars.simpleCompAppendMonus.SimpleCharStream
Deprecated.  
getColumn() - Method in class uk.ac.bbk.dcs.automed.qproc.translators.xquery.SimpleCharStream
Deprecated.  
getColumnCount() - Method in class uk.ac.ic.doc.automed.p2p.gui.PeerTableModel
 
getColumnDetailsSchemeLength() - Method in class uk.ac.ic.doc.automed.wrappers.SQLWrapperFactory
Return the number of fields in a full source table scheme that are used to represent the structure and type of one column (ie its name, data type, size, null, ...)
getColumnName(int) - Method in class uk.ac.ic.doc.automed.p2p.gui.PeerTableModel
 
getColumnNames(ResultSet) - Static method in class uk.ac.ic.doc.automed.Util
 
getColumns(SchemaObject, ArrayList) - Method in class uk.ac.ic.doc.automed.matching.SQLRelationshipExtractor
Returns an array of schema objects that are the columns of the specified table.
getColumnsOfTable(Schema, SchemaObject) - Method in class uk.ac.ic.doc.automed.matching.SQLIntegrator
Returns an array of schema objects of the columns of the specified table in the schema.
getColumnTypes(ResultSet) - Static method in class uk.ac.ic.doc.automed.Util
 
getCombinations(Object[]) - Method in class uk.ac.ic.doc.automed.matching.Integrator
 
getCombinationsOverMultipleArrays(ArrayList[]) - Method in class uk.ac.ic.doc.automed.matching.Integrator
 
getCommandClass() - Static method in class uk.ac.ic.doc.automed.DSR
 
getCommonRelationship(SchemaElementPairRelationship[]) - Static method in class uk.ac.ic.doc.automed.matching.Integrator
 
getCommonSchema(Transformation) - Method in class uk.ac.ic.doc.automed.reps.Transformation
 
getCommProperties(String) - Static method in class uk.ac.ic.doc.automed.p2p.AppToolKit
Get communication properties for a specific protocol
getCommProperties(String) - Method in class uk.ac.ic.doc.automed.p2p.AppToolKit.NodeConfig
Get communication properties for a specific protocol
getCommProtocol() - Static method in class uk.ac.ic.doc.automed.p2p.AppToolKit
Get communication protocol attributes
getCommProtocol() - Method in class uk.ac.ic.doc.automed.p2p.AppToolKit.NodeConfig
Get communication protocol attributes
getCompatibles(double) - Method in class uk.ac.ic.doc.automed.matching.Filter
Returns an array of SimilarSchemaElementPair objects that define compatible pairs.
getCompDistributionMetric(Cell) - Static method in class uk.ac.bbk.dcs.automed.qproc.iql.IQLUtility
 
getCompSubCompMap() - Method in class uk.ac.bbk.dcs.automed.wrappers.IQLTranslator
 
getConfig(String) - Static method in class uk.ac.ic.doc.automed.p2p.AppToolKit
 
getConfig(String, boolean) - Static method in class uk.ac.ic.doc.automed.p2p.AppToolKit
Return the P2PDirectory config
getConfig() - Method in class uk.ac.ic.doc.automed.p2p.directory.P2PDirectory
Return the reference to the configuration file used by the directory service
getConfigFileName() - Static method in class uk.ac.ic.doc.automed.DSR
Returns the name of the file used for data source definitions.
getConfiguration() - Method in class uk.ac.bbk.dcs.automed.qproc.annotate.AbstractQueryAnnotationProvider
 
getConfiguration() - Method in class uk.ac.bbk.dcs.automed.qproc.evaluate.Evaluator
 
getConfiguration() - Method in interface uk.ac.ic.doc.automed.qproc.eval.QueryEvaluationProvider
Returns the specific configuration for each query processing phase
getConnection() - Method in class uk.ac.ic.doc.automed.util.db.DBAccess
 
getConnection() - Method in class uk.ac.ic.doc.automed.util.db.DBEmbedded
 
getConnection() - Method in class uk.ac.ic.doc.automed.util.db.DBPostgres
 
getConnectionJDBCURL(String) - Static method in class uk.ac.ic.doc.automed.DSR
Return the JDBC URL assocaited with a DSR identified by its name
getConnectionPoint(Point) - Method in class uk.ac.ic.doc.automed.editor.DefaultDrawConstraintVertex
 
getConnectionPoint(Point) - Method in class uk.ac.ic.doc.automed.editor.DefaultDrawLinkVertex
 
getConnectionPoint(Point) - Method in class uk.ac.ic.doc.automed.editor.DefaultDrawNodalVertex
 
getConnectionPoint(Point) - Method in class uk.ac.ic.doc.automed.editor.drawables.DrawERGeneralisationVertex
 
getConnectionPoint(Point) - Method in class uk.ac.ic.doc.automed.editor.drawables.DrawRDBForeignKeyVertex
 
getConnectionPoint(Point) - Method in interface uk.ac.ic.doc.automed.editor.DrawableVertex
Calculate the Point where a DrawableArc connecting to this DrawableVertex should be drawn to, no
getConnectionPoint(Point) - Method in class uk.ac.ic.doc.automed.editor.DrawSchema
 
getConnectionPoint(Point) - Method in class uk.ac.ic.doc.automed.editor.DrawVertex
 
getConnectionPointMovableCentre(Point) - Method in class uk.ac.ic.doc.automed.editor.DrawVertex
A more visually pleasing implementation of DrawVertex.getConnectionPoint(java.awt.Point) for use on rectangular Drawables that allows the centre of the object you are connecting with to be treated as only loosely defining where the connection point should be aligned to, such that as the other point moves to the right, so the centre of the drawable moves a little to the right
getConnectionUsername(String) - Static method in class uk.ac.ic.doc.automed.DSR
Return the username associated with a DSR identified by its name
getConnectsTo() - Method in interface uk.ac.ic.doc.automed.editor.Drawable
 
getConnectsTo() - Method in class uk.ac.ic.doc.automed.editor.DrawArc
 
getConnectsTo() - Method in class uk.ac.ic.doc.automed.editor.DrawVertex
 
getConstantVariables() - Method in class uk.ac.ic.doc.rodex.qproc.MiniConQueryRewriter.MiniConDescription
Return a List of constants (if any) in the associated view
getConstantVariables() - Method in class uk.ac.ic.doc.rodex.qproc.QueryAnalyser
Return a List of constant variables in the query.
getConstraint() - Method in class uk.ac.bbk.dcs.automed.dataWarehousing.dlt.Lineage
 
getConstraint() - Method in class uk.ac.ic.doc.automed.reps.Construct
Returns a List of ConstructConstraint objects associated to this construct
getConstraint() - Method in class uk.ac.ic.doc.automed.reps.Transformation
Returns the constraint associated with the transformation.
getConstraint() - Method in class uk.ac.ic.doc.automed.tml.TML
 
getConstraintDefinition(String) - Method in class uk.ac.ic.doc.automed.reps.Construct
Return the definition of a constraint used within this Construct.
getConstraintReferencedConstructs(SchemaObject) - Static method in class uk.ac.ic.doc.automed.reps.Utility
Returns all the objects in a SchemaObject's scheme that are correspond to positions in the SchemaObject's scheme of type SCHEME_TYPE_CONSTRUCT
getConstruct() - Method in class uk.ac.bbk.dcs.automed.dataWarehousing.dlt.Lineage
 
getConstruct(int) - Static method in class uk.ac.ic.doc.automed.reps.Construct
Returns the Construct identified by the given construct identifier (CID).
getConstruct(String) - Method in class uk.ac.ic.doc.automed.reps.Model
Returns the named construct in the model or throws an AutoMedException if the construct name doesn't exist in the model.
getConstruct() - Method in class uk.ac.ic.doc.automed.reps.SchemaObject
Returns the construct type of the schema object.
getConstructAsSchemaObject(Transformation) - Static method in class uk.ac.bbk.dcs.automed.evolution.schemaModelEvolution.ExtensionalSchemaEvolution
 
getConstructAsString(Transformation) - Static method in class uk.ac.bbk.dcs.automed.evolution.schemaModelEvolution.ExtensionalSchemaEvolution
 
getConstructClass() - Method in class uk.ac.ic.doc.automed.editor.autolayout.AutoLayoutSchemaObject
Returns the class of the construct.
getConstructClass(int) - Static method in class uk.ac.ic.doc.automed.MDR
 
getConstructClass() - Method in class uk.ac.ic.doc.automed.reps.Construct
Returns the class of the construct.
getConstructClassString(int) - Static method in class uk.ac.ic.doc.automed.reps.Construct
 
getConstructConstraint(int, String) - Static method in class uk.ac.ic.doc.automed.MDR
 
getConstructConstraints(int) - Static method in class uk.ac.ic.doc.automed.MDR
Get all constraints associated to a construct
getConstructDescription() - Method in class uk.ac.ic.doc.automed.reps.Construct
Returns a printable description of the construct including all of its schemes.
getConstructMID(int) - Static method in class uk.ac.ic.doc.automed.MDR
Gets the Model Identifier for a given construct
getConstructName(int) - Static method in class uk.ac.ic.doc.automed.MDR
 
getConstructName() - Method in class uk.ac.ic.doc.automed.reps.ConstructConstraint
Retrieve construct from repository
getConstructNames(int) - Static method in class uk.ac.ic.doc.automed.MDR
Gets a list of all construct names for a modelling language
getConstructorArities() - Static method in class uk.ac.bbk.dcs.automed.qproc.iql.ReservedTokens
 
getConstructorTypes() - Static method in class uk.ac.bbk.dcs.automed.qproc.iql.ReservedTokens
 
getConstructProperty(int, int, String, boolean) - Static method in class uk.ac.ic.doc.automed.MDR
 
getConstructs(int) - Static method in class uk.ac.ic.doc.automed.MDR
Get the CIDs of all constructs for a modelling language
getConstructs() - Method in class uk.ac.ic.doc.automed.reps.Model
Returns an array of all the constructs in the model.
getConstructs(boolean) - Method in class uk.ac.ic.doc.automed.reps.Model
Get a list of Construct objects associated to a Model object for generating XML structure.
getConstructSchemeArgCID(int, int) - Static method in class uk.ac.ic.doc.automed.MDR
 
getConstructSchemeCount(int) - Static method in class uk.ac.ic.doc.automed.MDR
Gets the count of construct scheme arguments for this construct, the number is also the highest index (argument pos) usable as the construct scheme numbering starts at 1
getConstructSchemeHDMType(int, int) - Static method in class uk.ac.ic.doc.automed.MDR
 
getConstructSchemeLowerBound(int, int) - Static method in class uk.ac.ic.doc.automed.MDR
 
getConstructSchemeType(int, int) - Static method in class uk.ac.ic.doc.automed.MDR
 
getConstructSchemeUpperBound(int, int) - Static method in class uk.ac.ic.doc.automed.MDR
 
getConstructType() - Method in class uk.ac.bbk.dcs.automed.qproc.iql.SchemeInfo
 
getConstructType() - Method in class uk.ac.ic.doc.automed.reps.SchemaObject
 
getContainmentQuery() - Method in class uk.ac.ic.doc.rodex.qproc.QueryRewriterResult
 
getContent() - Method in class uk.ac.ic.doc.automed.p2p.messages.abstractlayer.AbstractMessage
 
getContent() - Method in class uk.ac.ic.doc.automed.qproc.cache.DefaultQueryCache
Implements interface Cacheable.
getContent() - Method in class uk.ac.ic.doc.automed.util.cache.CacheItem
Return all cache item's content as a HashMap
getContentItem(String) - Method in class uk.ac.ic.doc.automed.util.cache.CacheItem
Return an individual content item
getContentObject() - Method in class uk.ac.ic.doc.automed.qproc.cache.DefaultQueryCache
Return the cache data bag
getContentObject() - Method in interface uk.ac.ic.doc.automed.util.cache.Cacheable
Get the actual content object
getContext() - Method in class uk.ac.ic.doc.automed.p2p.messages.abstractlayer.AbstractMessage
 
getContext() - Method in interface uk.ac.ic.doc.automed.p2p.messages.applicationlayer.ApplicationMessage
 
getContext() - Method in class uk.ac.ic.doc.automed.p2p.messages.applicationlayer.BrokerAllQuery
 
getContext() - Method in exception uk.ac.ic.doc.automed.p2p.UnsuccessfulReplyException
 
getContext() - Method in class uk.ac.ic.doc.rodex.p2p.messages.applicationlayer.HelloAckMsg
Return the message context
getContext() - Method in class uk.ac.ic.doc.rodex.p2p.messages.applicationlayer.HelloMsg
Return the message context
getContext() - Method in class uk.ac.ic.doc.rodex.p2p.messages.applicationlayer.SchemaAdvertMsg
Return the message context
getContext() - Method in class uk.ac.ic.doc.rodex.p2p.messages.applicationlayer.SchemaRegMsg
Return the message context
getCost() - Method in class uk.ac.ic.doc.rodex.qproc.QualityIndicator
 
getCreated() - Static method in class uk.ac.bbk.dcs.automed.qproc.iql.ASG
 
getCreated() - Static method in class uk.ac.bbk.dcs.automed.qproc.iql.Cell
 
getCurrentModelSyntax - Static variable in class uk.ac.ic.doc.automed.editor.Editor
 
getCurrentRow(ResultSet) - Method in class uk.ac.ic.doc.automed.util.db.DBAccess
Return current row in a result set as a HashMap of column->value.
getCurrentTagName() - Method in class uk.ac.ic.doc.automed.xml.XMLWriter
 
getCurrentToken(int, int) - Method in class uk.ac.ic.doc.automed.reps.Syntax.Tokenizer
 
getCurrentToken(int) - Method in class uk.ac.ic.doc.automed.reps.Syntax.Tokenizer
 
getCurrentToken() - Method in class uk.ac.ic.doc.automed.reps.Syntax.Tokenizer
 
getDaemonPort() - Method in class uk.ac.ic.doc.automed.p2p.AutoMedMessagingHelper
Get the daemon port as created by the system
getDaemonPort() - Method in class uk.ac.ic.doc.automed.p2p.AutoMedPeer
public boolean isRegistered() { return this.registered; }
getData() - Method in class uk.ac.ic.doc.automed.wrappers.AutoMedTuple
Return all the attributes of this tuple as an array
getDatabaseName() - Method in class uk.ac.ic.doc.automed.util.persist.PersistentDB
Return the database name
getDatabaseNames() - Method in class uk.ac.ic.doc.automed.util.persist.PersistentDBController
Get a list of db names
getDatafromYattaData(Vector) - Method in class uk.ac.ic.doc.automed.wrappers.YattaWrapper
 
getDataLineageOf(Lineage) - Method in class uk.ac.bbk.dcs.automed.dataWarehousing.dlt.DataLineageTracing
 
getDataLineageOf(ArrayList) - Method in class uk.ac.bbk.dcs.automed.dataWarehousing.dlt.DataLineageTracing
 
getDataSource() - Method in class uk.ac.ic.doc.automed.p2p.PathwayDescription
 
getDataSource() - Method in class uk.ac.ic.doc.automed.reps.Schema
Create the DataSource object representing the data source represented by this schema
getDataSourceConnection(String) - Static method in class uk.ac.ic.doc.automed.DSR
Gets a connection to the named data souce.
getDataSourceConnection(String, String, String) - Static method in class uk.ac.ic.doc.automed.DSR
Gets a connection to the named data souce.
getDataSourceName() - Static method in class uk.ac.ic.doc.automed.MDR
Returns the name of the repository in the local database.
getDataSourceName() - Static method in class uk.ac.ic.doc.automed.SSMDR
Returns the name of the repository in the local database.
getDataSourceName() - Static method in class uk.ac.ic.doc.automed.STR
Returns the name of the repository in the local database.
getDataSourceProperty(String, String) - Static method in class uk.ac.ic.doc.automed.DSR
Returns the named property for the named data source as defined in the configuration file.
getDataType() - Method in class uk.ac.ic.doc.automed.matching.SchemaElement
Returns the data type of the schema element.
getDate() - Method in class uk.ac.bbk.dcs.automed.qproc.iql.Cell
 
getDate() - Static method in class uk.ac.ic.doc.automed.util.DateUtil
Return the current date/time in a standard format
getDate(long) - Static method in class uk.ac.ic.doc.automed.util.DateUtil
Return a date from number of its milli-seconds
getDateAsMillisecs() - Static method in class uk.ac.ic.doc.automed.util.DateUtil
Return the current date as the number of milli-seconds
getDateString() - Static method in class uk.ac.ic.doc.automed.util.DateUtil
Return a date string of current date
Example: 20/7/2006 1:1:1---> 20060720_010101
getDateTime() - Method in class uk.ac.bbk.dcs.automed.qproc.iql.Cell
 
getDay() - Method in class uk.ac.bbk.dcs.automed.qproc.iql.Cell
 
getDB(String) - Method in class uk.ac.ic.doc.automed.util.persist.PersistentDBController
Return reference to a created database object
getDBAccessInstance(String, String, String, String, Properties) - Static method in class uk.ac.ic.doc.automed.util.db.DBAccessFactory
Create a new DBAccess instance for a data source.
As such, we can initiate multiple databases (data sources) at the same time.
getDBDriver() - Method in class uk.ac.ic.doc.automed.reps.AccessMethod
Returns the database driver used for connecting to the database.
getDBInstance(String, String, String, Properties) - Static method in class uk.ac.ic.doc.automed.util.db.DBEmbedded
Create a new DB process instance for a data source named dsName.
As such, we can initiate multiple databases (data sources) at the same time.
getDBInstance(String, String, String, Properties) - Static method in class uk.ac.ic.doc.automed.util.db.DBPostgres
Create a new DB process instance for a data source named dsName.
As such, we can initiate multiple databases (data sources) at the same time.
getDebug() - Method in class uk.ac.ic.doc.automed.xml.XMLReader
 
getDebugInf() - Method in class uk.ac.ic.doc.rodex.qproc.QueryMediator
Debug information
getDebugLevel() - Static method in class uk.ac.ic.doc.automed.STR
Return the value of the debug level at set by STR.setDebugLevel(int) deprecated: use #Debugger.getDebugLevel() instead
getDebugLevel() - Static method in class uk.ac.ic.doc.automed.util.Debugger
Return the value of the debug level at set by Debugger.setDebugLevel(int)
getDebugLogger() - Static method in class uk.ac.bbk.dcs.automed.qproc.QProcLogger
 
getDebugResult() - Method in class uk.ac.ic.doc.rodex.qproc.QueryMediator
Debug result
getDeepQuery() - Method in class uk.ac.bbk.dcs.automed.xml.wrappers.NXDBWrapper
 
getDefaultConfigFileName() - Static method in class uk.ac.ic.doc.automed.DSRConfiguration
Return the default name of the configuration file used by the DSR class.
getDefaultDataSource() - Static method in class uk.ac.ic.doc.automed.DSR
 
getDefaultEncoding() - Static method in class uk.ac.ic.doc.automed.xml.XMLWriter
 
getDefaultName() - Static method in class uk.ac.ic.doc.automed.util.thread.AsynchThread
Return the default, unique name for a thread
getDefaultName() - Static method in class uk.ac.ic.doc.automed.util.thread.TimedThread
Return the default, unique name for a thread
getDefaultPath(String) - Static method in class uk.ac.ic.doc.automed.Util
Return the default path to a file/directory given its relative name
E.g.: given automed --> $USERHOME/.automed/automed
getDefaultQuery(int) - Static method in class uk.ac.bbk.dcs.automed.qproc.iql.IQLUtility
 
getDefaultSchemaName(AutoMedWrapper) - Method in class uk.ac.bbk.dcs.automed.wrappers.MSAccessWrapperFactory
 
getDefaultSchemaName(AutoMedWrapper) - Method in class uk.ac.ic.doc.automed.wrappers.HsqldbWrapperFactory
 
getDefaultSchemaName(AutoMedWrapper) - Method in class uk.ac.ic.doc.automed.wrappers.OracleWrapperFactory
 
getDefaultSchemaName(AutoMedWrapper) - Method in class uk.ac.ic.doc.automed.wrappers.PostgresWrapperFactory
 
getDefaultSchemaName(AutoMedWrapper) - Method in class uk.ac.ic.doc.automed.wrappers.SQLWrapperFactory
Return the name of the default schema for the type of database being wrapped.
getDefaultSchemaName(AutoMedWrapper) - Method in class uk.ac.ic.doc.automed.wrappers.TransactSQLWrapperFactory
 
getDefaultUserName() - Static method in class uk.ac.ic.doc.automed.DSR
 
getDefaultWrapperFactory() - Method in class uk.ac.bbk.dcs.automed.hdmstore.HdmWrapper
Returns a new instance of the default wrapper factory for this wrapper
getDefaultWrapperFactory() - Method in class uk.ac.bbk.dcs.automed.wrappers.MSAccessWrapper
Returns a new instance of the default wrapper factory for this wrapper
getDefaultWrapperFactory() - Method in class uk.ac.bbk.dcs.automed.xml.wrappers.DOMWrapper
Returns a new instance of the default wrapper factory for this wrapper
getDefaultWrapperFactory() - Method in class uk.ac.bbk.dcs.automed.xml.wrappers.EXISTWrapper
 
getDefaultWrapperFactory() - Method in class uk.ac.bbk.dcs.automed.xml.wrappers.SAXWrapper
Returns a new instance of the default wrapper factory for this wrapper
getDefaultWrapperFactory() - Method in class uk.ac.ic.doc.automed.wrappers.AutoMedWrapper
Return the default AutoMedWrapperFactory that is used to generate Schema instances from information in a data sources
getDefaultWrapperFactory() - Method in class uk.ac.ic.doc.automed.wrappers.CSVWrapper
 
getDefaultWrapperFactory() - Method in class uk.ac.ic.doc.automed.wrappers.HDMWrapper
Returns a new instance of the default wrapper factory for this wrapper
getDefaultWrapperFactory() - Method in class uk.ac.ic.doc.automed.wrappers.HsqldbWrapper
Returns a new instance of the default wrapper factory for this wrapper
getDefaultWrapperFactory() - Method in class uk.ac.ic.doc.automed.wrappers.OracleWrapper
Returns a new instance of the default wrapper factory for this wrapper
getDefaultWrapperFactory() - Method in class uk.ac.ic.doc.automed.wrappers.P2PWrapper
Return the default AutoMedWrapperFactory that is used to generate Schema instances from information in a data sources
getDefaultWrapperFactory() - Method in class uk.ac.ic.doc.automed.wrappers.PostgresWrapper
Returns a new instance of the default wrapper factory for this wrapper
getDefaultWrapperFactory() - Method in class uk.ac.ic.doc.automed.wrappers.QueryCacheWrapper
Return an instance of QueryCacheWrapperFactory associated to this wrapper
getDefaultWrapperFactory() - Method in class uk.ac.ic.doc.automed.wrappers.SQLWrapper
 
getDefaultWrapperFactory() - Method in class uk.ac.ic.doc.automed.wrappers.TransactSQLWrapper
Returns a new instance of the default wrapper factory for this wrapper
getDefaultWrapperFactory() - Method in class uk.ac.ic.doc.automed.wrappers.UMLWrapper
 
getDefaultWrapperFactory() - Method in class uk.ac.ic.doc.automed.wrappers.XMLSchemaWrapper
 
getDefaultWrapperFactory() - Method in class uk.ac.ic.doc.automed.wrappers.YattaWrapper
Returns a new instance of the default wrapper factory for this wrapper
getDefQueries() - Method in class uk.ac.ic.doc.rodex.qproc.QuerySubGoal
 
getDegree() - Method in class uk.ac.ic.doc.automed.matching.SimilarSchemaElementPair
Returns the bidirectional degree of this pair.
getDelta() - Method in class uk.ac.ic.doc.automed.reps.ModelChangeEvent
 
getDelta() - Method in class uk.ac.ic.doc.automed.reps.NetworkChangeEvent
 
getDelta() - Method in class uk.ac.ic.doc.automed.reps.SchemaChangeEvent
 
getDependentAutoLayoutPositionables() - Method in class uk.ac.ic.doc.automed.editor.autolayout.AutoLayoutSchemaObject
Return all AutoLayoutSchemaObject which have a reference to this AutoLayout* in their scheme.
getDependentAutoLayoutPositionables(int) - Method in class uk.ac.ic.doc.automed.editor.autolayout.AutoLayoutSchemaObject
Return AutoLayoutSchemaObject of a particular Construct which have a reference to this AutoLayout* object in their scheme.
getDependentSchemaObjects(SchemaObject) - Method in class uk.ac.ic.doc.automed.reps.Schema
Return all SchemaObjects of a particular Construct in this Schema which have a reference to the given SchemaObject in their scheme.
getDependentSchemaObjects(SchemaObject, Construct) - Method in class uk.ac.ic.doc.automed.reps.Schema
Return those SchemaObjects of a particular Construct in this Schema which have a reference to the given SchemaObject in their scheme.
getDependentSchemaObjects() - Method in class uk.ac.ic.doc.automed.reps.SchemaObject
Return all SchemaObjects which have a reference to this SchemaObject in their scheme.
getDependentSchemaObjects(Construct) - Method in class uk.ac.ic.doc.automed.reps.SchemaObject
Return those SchemaObjects of a particular Construct which have a reference to this SchemaObject in their scheme.
getDependentSchemaObjects(int, int) - Static method in class uk.ac.ic.doc.automed.STR
Returns the object identifiers (OBID) in ascending order of all the schema objects that depedent on the existanace of some other object.
getDepth(Document) - Static method in class uk.ac.bbk.dcs.automed.xml.utilities.XMLUtilities
 
getDescription() - Method in class uk.ac.ic.doc.automed.editor.DotExtensionFileFilter
 
getDescription() - Method in class uk.ac.ic.doc.automed.p2p.directory.ModelDescription
Get the plain text description of the public Schema being described.
getDescription() - Method in class uk.ac.ic.doc.automed.p2p.directory.SchemaDescription
Get the plain text description of the public Schema being described.
getDescription() - Method in exception uk.ac.ic.doc.automed.p2p.UnsuccessfulReplyException
 
getDescription() - Method in class uk.ac.ic.doc.automed.wrappers.XMLFileFilter
Returns the human readable description of this filter.
getDescription() - Method in class uk.ac.ic.doc.rodex.p2p.messages.applicationlayer.SchemaAccessibility
 
getDesiredPort() - Method in class uk.ac.ic.doc.automed.p2p.communication.AbstractDaemon
 
getDestroyed() - Static method in class uk.ac.bbk.dcs.automed.qproc.iql.ASG
 
getDestroyed() - Static method in class uk.ac.bbk.dcs.automed.qproc.iql.Cell
 
getDetails() - Method in class uk.ac.ic.doc.automed.util.queue.Job
 
getDHT(DHTConfiguration) - Static method in class uk.ac.ic.doc.automed.p2p.overlay.EnhancedDHTFactory
Returns an instance of DHT.
getDHT(DHTConfiguration, ID) - Static method in class uk.ac.ic.doc.automed.p2p.overlay.EnhancedDHTFactory
Returns an instance of DHT.
getDHT(short, short, DHTConfiguration) - Static method in class uk.ac.ic.doc.automed.p2p.overlay.EnhancedDHTFactory
Returns an instance of DHT.
getDHT(short, short, DHTConfiguration, ID) - Static method in class uk.ac.ic.doc.automed.p2p.overlay.EnhancedDHTFactory
Returns an instance of DHT.
getDHT(DHTConfiguration, RoutingService) - Static method in class uk.ac.ic.doc.automed.p2p.overlay.EnhancedDHTFactory
Returns an instance of DHT.
getDirectory() - Method in class uk.ac.ic.doc.automed.p2p.AutoMedPeer
Return directory service object
getDirectory() - Method in class uk.ac.ic.doc.rodex.p2p.DirectoryServicePeer
Return directory service object
getDirectoryInstance() - Static method in class uk.ac.ic.doc.automed.p2p.directory.P2PDirectory
Create a unique instance of directory service from application code
getDirectoryRepository() - Method in class uk.ac.ic.doc.automed.p2p.directory.P2PDirectory
Returns the reference to the P2PDirectoryRepository instance that is responsible
for handling storage for the directory service.
getDisjointIDs() - Method in class uk.ac.bbk.dcs.automed.qproc.QueryProcessorConfiguration
 
getDoc() - Method in class uk.ac.ic.doc.automed.reps.AutoMedToXSDOM
 
getDoc() - Method in class uk.ac.ic.doc.automed.wrappers.XMLSchemaWrapper
Return the XSDOM document
getDoc() - Method in class uk.ac.ic.doc.automed.wrappers.XMLSchemaWrapperFactory
Return the global doc for this factory
getDomain() - Static method in class uk.ac.ic.doc.automed.p2p.AppToolKit
Return the P2PDirectory config.
getDomain() - Method in class uk.ac.ic.doc.automed.p2p.AppToolKit.NodeConfig
Return the domain name of this peer
getDomain() - Method in class uk.ac.ic.doc.automed.p2p.directory.PeerDescription
Return the peer's domain
getDomain() - Method in class uk.ac.ic.doc.automed.p2p.directory.PeerEvent
 
getDomain() - Method in class uk.ac.ic.doc.rodex.p2p.messages.applicationlayer.HelloMsg
Peer's domain
getDoublePosition() - Method in class uk.ac.ic.doc.automed.editor.autolayout.AutoLayoutSpringObject
Give accurate object position.
getDoubleValue(String) - Method in class uk.ac.ic.doc.automed.util.db.DBRecord
 
getDrawable() - Method in class uk.ac.ic.doc.automed.editor.autolayout.AutoLayoutPositionable
 
getDrawable(Positionable) - Method in class uk.ac.ic.doc.automed.editor.EditorPanel
Return a Drawable that has been used to represent a Positionable in this panel.
getDrawable(Positionable) - Method in class uk.ac.ic.doc.automed.editor.Gui
Return a Drawable that has been used to represent a Positionable.
getDriver() - Static method in class uk.ac.ic.doc.automed.wrappers.CSVWrapper
The name of the driver string that identifies this wrapper
getDriver() - Static method in class uk.ac.ic.doc.automed.wrappers.UMLWrapper
The name of the driver string that identifies this wrapper
getDriver() - Static method in class uk.ac.ic.doc.automed.wrappers.XMLSchemaWrapper
The name of the driver string that identifies this wrapper
getDriver() - Static method in class uk.ac.ic.doc.automed.wrappers.YattaWrapper
The name of the driver string that identifies this wrapper
getDrivers() - Static method in class uk.ac.ic.doc.automed.wrappers.AutoMedWrapper
Returns all the drivers currently loaded into the system
getDsQuality() - Method in class uk.ac.ic.doc.rodex.qproc.QualityIndicator
 
getDTD() - Method in class uk.ac.ic.doc.automed.xml.XMLWriter
 
getDtPattern() - Method in class uk.ac.ic.doc.automed.matching.SchemaElement
 
getDuplicates(PersistentKey) - Method in interface uk.ac.ic.doc.automed.util.persist.DuplicatePersistentHandler
Use the database cursor to obtain all values corresponding to a key
getDuplicates(PersistentKey) - Method in class uk.ac.ic.doc.automed.util.persist.PersistentDB
Use the database cursor to obtain all values corresponding to a key
getE() - Method in class uk.ac.bbk.dcs.automed.qproc.optimise.FoldFunction
 
getEdgeInstances(String) - Method in class uk.ac.bbk.dcs.automed.hdmstore.HdmStore
Return all the instances of the passed edge type as a LinkedList of Span elements, each Span representing an instance of an edge.
getEditorPanel() - Method in class uk.ac.ic.doc.automed.editor.Gui.EditorFrame
 
getElement(String) - Method in class uk.ac.bbk.dcs.automed.xml.xmldssGraph.XMLDSSGraph
 
getElement() - Method in class uk.ac.ic.doc.automed.matching.modules.ElementVectorRepresentation
 
getElement(String, boolean) - Static method in class uk.ac.ic.doc.automed.matching.SchemaElement
Returns a SchemaElement object.
getElement(SchemaObject, boolean) - Static method in class uk.ac.ic.doc.automed.matching.SchemaElement
Returns a SchemaElement object.
getElement(int) - Method in class uk.ac.ic.doc.automed.matching.SchemaElementPair
Returns the SchemaElement object at the specified index in the pair.
getElementByCID(Document, String) - Static method in class uk.ac.bbk.dcs.automed.xml.utilities.UIDUtility
Returns the node in the input doc that has an AutoMedID with the value of elementCID
getElementByUID(Document, String) - Static method in class uk.ac.bbk.dcs.automed.xml.utilities.UIDUtility
Returns the node in the input doc that has an AutoMedID with the value of elementUID
getElementChildCount(Node) - Static method in class uk.ac.bbk.dcs.automed.xml.utilities.XMLUtilities
Counts the element children of the given node.
getElementChildren(Element) - Static method in class uk.ac.bbk.dcs.automed.xml.utilities.XMLUtilities
 
getElementChildren(Element, String) - Static method in class uk.ac.bbk.dcs.automed.xml.utilities.XMLUtilities
 
getElementChildren() - Method in class uk.ac.bbk.dcs.automed.xml.xmldssGraph.XMLDSSGraphElement
 
getElementExtent(String) - Method in class uk.ac.bbk.dcs.automed.xml.materialisation.Materialiser
 
getElementExtent(String) - Method in class uk.ac.bbk.dcs.automed.xml.materialisation.XMLDSSMaterialiser
 
getElementLevel(Node, int) - Static method in class uk.ac.bbk.dcs.automed.xml.utilities.XMLUtilities
Returns all the element nodes in a given level.
getElementName(String) - Static method in class uk.ac.bbk.dcs.automed.xml.utilities.UIDUtility
 
getElementNodeOrder(Element) - Static method in class uk.ac.bbk.dcs.automed.xml.utilities.XMLUtilities
Returns the order of element node n in its parent's children NodeList - takes into account only elements.
getElementPathExpression(Element) - Static method in class uk.ac.bbk.dcs.automed.xml.utilities.XMLUtilities
 
getElements() - Method in class uk.ac.bbk.dcs.automed.xml.xmldssGraph.XMLDSSGraph
 
getElements(SchemaObject[], boolean) - Static method in class uk.ac.ic.doc.automed.matching.Integrator
Returns a SchemaElement array, whose member wraps the corresponding member in the SchemaObject array.
getElements() - Method in class uk.ac.ic.doc.automed.matching.modules.bidirectionalmap.Cluster
 
getElements() - Method in class uk.ac.ic.doc.automed.matching.modules.bidirectionalmap.Clusterer
 
getElements() - Method in class uk.ac.ic.doc.automed.matching.modules.bidirectionalmap.SimilarCluster
 
getElements() - Method in class uk.ac.ic.doc.rodex.qproc.QuerySubGoal
Return all scheme elements (scheme name + fields) as one array
getEleStruct() - Method in class uk.ac.bbk.dcs.automed.dataWarehousing.dlt.Lineage
 
getEmptyDOM(String) - Static method in class uk.ac.bbk.dcs.automed.xml.utilities.XMLUtilities
 
getEncoding() - Method in class uk.ac.ic.doc.automed.xml.XMLWriter
 
getEncrypt() - Method in class uk.ac.ic.doc.automed.p2p.directory.PeerDescription
 
getEncryption() - Method in class uk.ac.ic.doc.rodex.p2p.messages.applicationlayer.AuthenticationTuple
 
getEncryption() - Method in class uk.ac.ic.doc.rodex.p2p.messages.applicationlayer.HelloMsg
 
getEndColumn() - Method in class uk.ac.bbk.dcs.automed.qproc.annotate.grammars.schemes.SimpleCharStream
 
getEndColumn() - Method in class uk.ac.bbk.dcs.automed.qproc.annotate.grammars.simpleComp.SimpleCharStream
 
getEndColumn() - Method in class uk.ac.bbk.dcs.automed.qproc.annotate.grammars.simpleCompAppend.SimpleCharStream
 
getEndColumn() - Method in class uk.ac.bbk.dcs.automed.qproc.annotate.grammars.simpleCompAppendMonus.SimpleCharStream
 
getEndColumn() - Method in class uk.ac.bbk.dcs.automed.qproc.translators.xquery.SimpleCharStream
 
getEndFragmentMessage() - Static method in class uk.ac.ic.doc.automed.p2p.util.Util
 
getEndLine() - Method in class uk.ac.bbk.dcs.automed.qproc.annotate.grammars.schemes.SimpleCharStream
 
getEndLine() - Method in class uk.ac.bbk.dcs.automed.qproc.annotate.grammars.simpleComp.SimpleCharStream
 
getEndLine() - Method in class uk.ac.bbk.dcs.automed.qproc.annotate.grammars.simpleCompAppend.SimpleCharStream
 
getEndLine() - Method in class uk.ac.bbk.dcs.automed.qproc.annotate.grammars.simpleCompAppendMonus.SimpleCharStream
 
getEndLine() - Method in class uk.ac.bbk.dcs.automed.qproc.translators.xquery.SimpleCharStream
 
getEntries() - Method in class uk.ac.ic.doc.rodex.qproc.QueryRewriterResult
 
getEntries() - Method in class uk.ac.ic.doc.rodex.qproc.RangeBasedQueryRewriterResult
 
getEntry(ASG) - Method in class uk.ac.ic.doc.rodex.qproc.QueryRewriterResult
 
getEntry(ASG) - Method in class uk.ac.ic.doc.rodex.qproc.RangeBasedQueryRewriterResult
 
getEntryPoint() - Method in class uk.ac.bbk.dcs.automed.xml.xmldssGraph.XMLDSSGraph
 
getEnv() - Method in class uk.ac.ic.doc.automed.util.persist.PersistentDBController
Return the database environment Needed for things like beginning transactions
getEquivHDMType(int) - Static method in class uk.ac.ic.doc.automed.MDR
 
getEquivHighLevelType(int, int) - Static method in class uk.ac.ic.doc.automed.MDR
 
getEvaluationState() - Method in class uk.ac.bbk.dcs.automed.qproc.iql.Cell
 
getEvaluator() - Method in class uk.ac.bbk.dcs.automed.qproc.QueryProcessorConfiguration
Return evaluator name
getEvolutionType() - Method in class uk.ac.bbk.dcs.automed.evolution.dataEvolution.DataEvolution
 
getEvolutionType() - Method in interface uk.ac.bbk.dcs.automed.evolution.Evolution
 
getEvolutionType() - Method in class uk.ac.bbk.dcs.automed.evolution.schemaModelEvolution.SMEvolution
 
getEvolutionType() - Method in class uk.ac.bbk.dcs.automed.evolution2.dataEvolution.DataEvolution
 
getEvolutionType() - Method in interface uk.ac.bbk.dcs.automed.evolution2.Evolution
 
getEvolutionType() - Method in class uk.ac.bbk.dcs.automed.evolution2.modelEvolution.ModelEvolution
 
getEvolutionType() - Method in class uk.ac.bbk.dcs.automed.evolution2.schemaEvolution.SchemaEvolution
 
getExactQuery(String) - Method in class uk.ac.ic.doc.automed.qproc.cache.DefaultQueryCache
Check in the cache for an exact query match.
getExactQuery(String) - Method in interface uk.ac.ic.doc.automed.qproc.cache.IQueryCache
Check in the cache for an exact query match.
getExactSubQuery(String, String) - Method in class uk.ac.ic.doc.automed.qproc.cache.DefaultQueryCache
Check if result of the sub-query of a query already exists in the cache.
getExactSubQuery(String) - Method in class uk.ac.ic.doc.automed.qproc.cache.DefaultQueryCache
Check sub-query existence in the whole cache.
getExactSubQuery(String, String) - Method in interface uk.ac.ic.doc.automed.qproc.cache.IQueryCache
Check if result of the sub-query of a query already exists in the cache.
getExactSubQuery(String) - Method in interface uk.ac.ic.doc.automed.qproc.cache.IQueryCache
Check sub-query existence in the whole cache.
getExecutionalQuery(boolean) - Method in class uk.ac.ic.doc.rodex.qproc.QueryRewriteProcessor
Rewrite optimised query the same way as in QueryRewriteProcessor.getInternalQuery(boolean rebuildIfExist)
to construct the executional query.
getExpression() - Method in class uk.ac.ic.doc.rodex.qproc.QueryFunction
 
getExtendedConstruct() - Method in class uk.ac.bbk.dcs.automed.evolution2.ExtendedConstruct
 
getExtension(File) - Method in class uk.ac.ic.doc.automed.wrappers.XMLFileFilter
Return the extension portion of the file's name .
getExtentOf(String) - Method in class uk.ac.bbk.dcs.automed.dataWarehousing.dlt.DataLineageTracing
 
getExternalQuery() - Method in class uk.ac.ic.doc.rodex.qproc.QueryMediator
Getter methods for various query (ASG) objects
getExternalQuery() - Method in class uk.ac.ic.doc.rodex.qproc.QueryRewriteProcessor
Get external query
getFeatureNames() - Method in class uk.ac.bbk.dcs.automed.hdmstore.HdmWrapperFactory
Return a string list of features supported by this wrapper: at present none!
getFeatureNames() - Method in class uk.ac.bbk.dcs.automed.xml.wrappers.XMLWrapperFactory
Return a string list of features supported by this wrapper, where the first one is bit zero in the feature bit map, second bit one, etc
getFeatureNames() - Method in class uk.ac.ic.doc.automed.wrappers.AutoMedWrapperFactory
Return the list of feature names provided by the wrapper factory.
getFeatureNames() - Method in class uk.ac.ic.doc.automed.wrappers.CSVWrapperFactory
Return a string list of features supported by this wrapper, where the first one is bit zero in the feature bit map, second bit one, etc
getFeatureNames() - Method in class uk.ac.ic.doc.automed.wrappers.HDMWrapperFactory
Return a string list of features supported by this wrapper: at present none!
getFeatureNames() - Method in class uk.ac.ic.doc.automed.wrappers.P2PWrapperFactory
 
getFeatureNames() - Method in class uk.ac.ic.doc.automed.wrappers.SQLWrapperFactory
Return a string list of features supported by this wrapper, where the first one is bit zero in the feature bit map, second bit one, etc
getFeatureNames() - Method in class uk.ac.ic.doc.automed.wrappers.UMLWrapperFactory
Return a string list of features supported by this wrapper, where the first one is bit zero in the feature bit map, second bit one, etc
getFeatureNames() - Method in class uk.ac.ic.doc.automed.wrappers.XMLSchemaWrapperFactory
Return a string list of features supported by this wrapper, where the first one is bit zero in the feature bit map, second bit one, etc
getFeatureNames() - Method in class uk.ac.ic.doc.automed.wrappers.YattaWrapperFactory
Return the list of feature names provided by the YATTA wrapper factory.
getFeatures() - Method in class uk.ac.ic.doc.automed.wrappers.AutoMedWrapperFactory
Return the bitwise or of all the features in use for a wrapper.
getField(String) - Method in class uk.ac.ic.doc.automed.p2p.gui.InputDialog
 
getField(int) - Method in class uk.ac.ic.doc.automed.wrappers.AutoMedQuery
Return a field from the query node, where fields are counted from zero.
getField(int) - Method in class uk.ac.ic.doc.automed.wrappers.SchemeQuery
Return a field from the query node.
getField() - Method in class uk.ac.ic.doc.automed.xmlschema.output.XPathSelector
Return XPath field
getFields() - Method in class uk.ac.ic.doc.rodex.qproc.QuerySubGoal
 
getFieldValue(String) - Method in class uk.ac.ic.doc.automed.p2p.tree.AutoMedObject
 
getFile(String, String) - Static method in class uk.ac.ic.doc.automed.Util
 
getFinalConstructs() - Method in class uk.ac.bbk.dcs.automed.qproc.reformulate.CompositeViewMap
 
getFirstElement() - Method in class uk.ac.ic.doc.automed.matching.SchemaElementPair
Returns the first SchemaElement object of the pair.
getFloat() - Method in class uk.ac.bbk.dcs.automed.qproc.iql.Cell
 
getFoldFunction(String) - Method in class uk.ac.bbk.dcs.automed.qproc.optimise.FoldFunctionTable
 
getFontMetrics() - Method in class uk.ac.ic.doc.automed.editor.EditorPanel
Utility method for all editor drawing tools to use when they need to obtain the FontMetrics of an EditorPanel
getFontMetrics(JComponent) - Static method in class uk.ac.ic.doc.automed.editor.Gui
Utility method for all editor drawing tools to use when they need to obtain the FontMetrics of a JComponent
getForegroundColor() - Method in interface uk.ac.ic.doc.automed.editor.Positionable
 
getForegroundColor() - Method in class uk.ac.ic.doc.automed.reps.Construct
Return the default foreground colour to be used from drawing SchemaObjects of this Construct.
getForegroundColor() - Method in class uk.ac.ic.doc.automed.reps.Model
Return the default foreground colour to be used from drawing SchemaObjects of this Model.
getForegroundColor() - Method in class uk.ac.ic.doc.automed.reps.Network
 
getForegroundColor() - Method in class uk.ac.ic.doc.automed.reps.Schema
 
getForegroundColor() - Method in class uk.ac.ic.doc.automed.reps.SchemaObject
 
getForest() - Method in class uk.ac.bbk.dcs.automed.graph.Forest
 
getFormuatedQuery() - Method in class uk.ac.ic.doc.rodex.qproc.QueryRewriteProcessor
Return the original formulated query
getFormulatedQuery() - Method in class uk.ac.ic.doc.rodex.qproc.QueryMediator
 
getForwardDegree() - Method in class uk.ac.ic.doc.automed.matching.BidirectionalDegree
Returns the forward similarity degree.
getForwardMessage(String) - Method in class uk.ac.ic.doc.automed.p2p.messages.applicationlayer.BrokerAllQuery
 
getFrame() - Method in class uk.ac.ic.doc.automed.editor.Gui
 
getFreshness() - Method in class uk.ac.ic.doc.rodex.qproc.QualityIndicator
 
getFromOBID() - Method in class uk.ac.ic.doc.automed.reps.Transformation
Returns the schema object identifier (OBID) of the input of the transformaiton (fromObject).
getFromObject() - Method in class uk.ac.ic.doc.automed.reps.Transformation
Returns the SchemaObject input of the transformation.
getFromObject() - Method in class uk.ac.ic.doc.automed.tml.TML
 
getFromObjectsUnmatched() - Method in exception uk.ac.ic.doc.automed.reps.SchemasNotIdenticalException
 
getFromSchema() - Method in class uk.ac.ic.doc.automed.p2p.PathwayDescription
 
getFromSchema() - Method in exception uk.ac.ic.doc.automed.reps.SchemasNotIdenticalException
 
getFromSchema() - Method in class uk.ac.ic.doc.automed.reps.Transformation
Returns the originating Schema of the transformation.
getFromSchema() - Method in class uk.ac.ic.doc.automed.tml.TML
 
getFromSID() - Method in class uk.ac.ic.doc.automed.reps.Transformation
Returns the schema identifier (SID) of the originating schema.
getFullExceptionMessage(Throwable) - Static method in class uk.ac.ic.doc.automed.xml.XMLSyntax
 
getFullExceptionMessage(Throwable, String, boolean) - Static method in class uk.ac.ic.doc.automed.xml.XMLSyntax
 
getFullTagNames() - Method in class uk.ac.ic.doc.automed.xml.XMLWriter
 
getFunction(String) - Method in class uk.ac.bbk.dcs.automed.qproc.FunctionTable
 
getFunction(String) - Method in class uk.ac.bbk.dcs.automed.qproc.iql.Environment
 
getFunction() - Method in class uk.ac.ic.doc.automed.reps.Transformation
Returns the function of the transformation.
getFunction() - Method in class uk.ac.ic.doc.automed.tml.TML
 
getFunctionClassMap() - Method in class uk.ac.bbk.dcs.automed.qproc.FunctionTable
 
getFunctions() - Method in class uk.ac.ic.doc.rodex.qproc.MiniConQueryRewriter.MiniConDescription
Return the List of QueryFunction objects found.
Returns null if no functions found
getFunctions() - Method in class uk.ac.ic.doc.rodex.qproc.QueryAnalyser
Return the List of QueryFunction objects found.
Returns null if no functions found
getFunctions(QueryVariable) - Method in class uk.ac.ic.doc.rodex.qproc.QueryAnalyser
Get a List of query functions which are linked to a specified query variable
getFunctions(QuerySubGoal) - Method in class uk.ac.ic.doc.rodex.qproc.QueryAnalyser
Get a List of query functions which are linked to a specified query sub-goal
getFunctionTable() - Method in class uk.ac.bbk.dcs.automed.qproc.QueryProcessorConfiguration
 
getFunctionTableString() - Method in class uk.ac.bbk.dcs.automed.qproc.QueryProcessorConfiguration
 
getFutureBounds() - Method in class uk.ac.ic.doc.automed.editor.autolayout.AutoLayoutSchemaObject
 
getFutureBounds() - Method in class uk.ac.ic.doc.automed.editor.autolayout.AutoLayoutSpringObject
 
getFutureSchemaBounds() - Method in class uk.ac.ic.doc.automed.editor.autolayout.AutoLayoutSchemaObject
 
getGeneralConstruct(SchemaObject) - Static method in class uk.ac.ic.doc.automed.reps.Utility
Returns a SchemaObject corresponding to the "general" entity of a generalization.
getGenerators() - Method in class uk.ac.bbk.dcs.automed.qproc.iql.ASGComprehension
 
getGenericDataType(String) - Static method in class uk.ac.ic.doc.automed.matching.SchemaElement
 
getGenericRoot(boolean) - Method in class uk.ac.bbk.dcs.automed.xml.materialisation.Materialiser
 
getGenericRoot(boolean) - Method in class uk.ac.bbk.dcs.automed.xml.materialisation.XMLDSSMaterialiser
 
getGlobalId() - Method in class uk.ac.ic.doc.automed.reps.PersistentKey
 
getGlobalName() - Method in class uk.ac.ic.doc.automed.reps.Schema
Returns the global schema name
getGraph() - Method in class uk.ac.bbk.dcs.automed.graph.DirectedGraph
 
getGroupNo(int, int) - Static method in class uk.ac.ic.doc.automed.SSMDR
Returns the group no of ssdpattern and schemaobject in the SSMDR.
getGroupNoByOBID(int) - Method in class uk.ac.ic.doc.automed.ssd.SSDFormat
 
getHandler() - Method in class uk.ac.ic.doc.automed.p2p.communication.AbstractServer
 
getHandlerObject() - Method in class uk.ac.ic.doc.automed.p2p.communication.AbstractClient
Return reference to RequestListener (handler) object
getHandlerType() - Method in class uk.ac.ic.doc.automed.util.LogOutputHandler
return the log handler type
getHandlerType() - Method in class uk.ac.ic.doc.automed.util.queue.Job
 
getHandlerType(JobHandler) - Static method in class uk.ac.ic.doc.automed.util.queue.QueueWorker
Utility method to standardise JobHandler the type of a job handler
getHashMapFromAConstraint(Cell) - Static method in class uk.ac.bbk.dcs.automed.dataWarehousing.util.Tools4DW
 
getHashMapFromTwoTuples(Cell, Cell) - Static method in class uk.ac.bbk.dcs.automed.dataWarehousing.util.Tools4DW
 
getHDMEquiv() - Method in class uk.ac.ic.doc.automed.reps.TypeHierarchy.TypeObject
Get the type id of the HDM equivalent of this type
getHDMType() - Method in class uk.ac.ic.doc.automed.reps.ConstructScheme
Returns the HDM type of the ConstructScheme.
getHDMType() - Method in class uk.ac.ic.doc.automed.reps.Scheme
 
getHDMTypeString(int) - Static method in class uk.ac.ic.doc.automed.reps.ConstructScheme
 
getHDMTypeString(int, boolean) - Static method in class uk.ac.ic.doc.automed.reps.ConstructScheme
 
getHead() - Method in class uk.ac.bbk.dcs.automed.qproc.iql.ASGComprehension
 
getHeaders() - Method in class uk.ac.ic.doc.automed.util.cache.CacheContentDescription
Return headers
getHeadPattern() - Method in class uk.ac.bbk.dcs.automed.wrappers.IQLTranslator
 
getHeadVariables() - Method in class uk.ac.bbk.dcs.automed.qproc.iql.ASGComprehensionMiniCon
 
getHeadVarIndex(String) - Method in class uk.ac.ic.doc.rodex.qproc.QueryAnalyser
Return the index of a head variable in the query head var set
getHeadVars() - Method in class uk.ac.bbk.dcs.automed.qproc.iql.ASGComprehension
 
getHeadVars() - Method in class uk.ac.ic.doc.rodex.qproc.MiniConQueryRewriter.MiniConDescription
Return a List of head variables of the view query associated
to this MCD
getHeadVars() - Method in class uk.ac.ic.doc.rodex.qproc.QueryAnalyser
Getter methods
getHeadVarsForTable(String) - Method in class uk.ac.ic.doc.rodex.qproc.QueryAnalyser
Return a Map of head vars that are associated to a table.
getHelloProtocolChannel() - Method in class uk.ac.ic.doc.automed.p2p.AppToolKit
 
getHelloProtocolChannel() - Method in class uk.ac.ic.doc.automed.p2p.AppToolKit.NodeConfig
 
getHelloTime() - Method in class uk.ac.ic.doc.automed.p2p.AppToolKit.NodeConfig
Peer's hello time
getHost() - Method in class uk.ac.ic.doc.automed.p2p.AutoMedPeer.PeerProcessDescription
return the host IP
getHours() - Method in class uk.ac.bbk.dcs.automed.qproc.iql.Cell
 
getIcon() - Method in class uk.ac.ic.doc.automed.wrappers.xsdomobject.XSDOMObject
 
getIcon() - Method in interface uk.ac.ic.doc.automed.xmlschema.tree.IconAndTipCarrier
 
getID() - Method in class uk.ac.bbk.dcs.automed.qproc.iql.Cell
 
getId() - Method in class uk.ac.ic.doc.automed.p2p.tree.TreeNode
 
getID() - Method in class uk.ac.ic.doc.automed.util.cache.CacheItem
Get cache item's id
getID() - Method in class uk.ac.ic.doc.rodex.qproc.QuerySubGoal
Return the object if corresponding to this scheme
getIDColumn() - Method in class uk.ac.ic.doc.automed.util.cache.CacheContentDescription
 
getIdents() - Method in class uk.ac.ic.doc.automed.p2p.tree.AbstractNetwork
 
getIDString() - Static method in class uk.ac.ic.doc.automed.STR
Return a string that is globally unique for a STR repository
getIDString() - Method in class uk.ac.ic.doc.rodex.p2p.Peer
Overlay ID string
GetImage() - Method in class uk.ac.bbk.dcs.automed.qproc.annotate.grammars.schemes.SimpleCharStream
 
GetImage() - Method in class uk.ac.bbk.dcs.automed.qproc.annotate.grammars.simpleComp.SimpleCharStream
 
GetImage() - Method in class uk.ac.bbk.dcs.automed.qproc.annotate.grammars.simpleCompAppend.SimpleCharStream
 
GetImage() - Method in class uk.ac.bbk.dcs.automed.qproc.annotate.grammars.simpleCompAppendMonus.SimpleCharStream
 
GetImage() - Method in class uk.ac.bbk.dcs.automed.qproc.translators.xquery.SimpleCharStream
 
getIncomingEdges() - Method in class uk.ac.bbk.dcs.automed.graph.DirectedGraphNode
 
getIndentSize() - Method in class uk.ac.ic.doc.automed.xml.XMLWriter
 
getIndex() - Method in class uk.ac.ic.doc.automed.util.cache.CacheItem
 
getIndex() - Method in class uk.ac.ic.doc.rodex.qproc.QuerySubGoal
Return the temporary index position of this sub-goal in a list
getInfoQuality() - Method in class uk.ac.ic.doc.rodex.qproc.QualityIndicator
 
getInputDoc() - Method in class uk.ac.bbk.dcs.automed.xml.wrappers.DOMWrapper
 
getInsertableSQLValue(Object, int) - Static method in class uk.ac.ic.doc.automed.Util
 
getInstance(String) - Static method in class uk.ac.bbk.dcs.automed.qproc.iql.ASGComprehension
 
getInstance(Cell) - Static method in class uk.ac.bbk.dcs.automed.qproc.iql.ASGComprehension
 
getInstance(File) - Static method in class uk.ac.bbk.dcs.automed.qproc.iql.ASGComprehension
 
getInstance(String) - Static method in class uk.ac.bbk.dcs.automed.qproc.iql.ASGComprehensionMiniCon
 
getInstance(Cell) - Static method in class uk.ac.bbk.dcs.automed.qproc.iql.ASGComprehensionMiniCon
 
getInstance(File) - Static method in class uk.ac.bbk.dcs.automed.qproc.iql.ASGComprehensionMiniCon
 
getInstance(Schema, Schema, QueryProcessorConfiguration, int) - Static method in class uk.ac.bbk.dcs.automed.qproc.reformulate.AtomicViewMap
 
getInstance(Schema, Schema, QueryProcessorConfiguration) - Static method in class uk.ac.bbk.dcs.automed.qproc.reformulate.CompositeViewMap
 
getInstance(int) - Static method in class uk.ac.ic.doc.automed.p2p.overlay.OverlayController
 
getInstance(int, int) - Static method in class uk.ac.ic.doc.automed.p2p.overlay.OverlayController
 
getInstance() - Static method in class uk.ac.ic.doc.automed.qproc.cache.CacheManager
 
getInstance(long) - Static method in class uk.ac.ic.doc.automed.qproc.cache.DefaultQueryCache
A singleton method to make sure that there is only one instance of query cache per peer
getInstance(String, boolean) - Static method in class uk.ac.ic.doc.automed.util.persist.PersistentDBController
Set up the environment once
getInstance(String, PeerStateHandler) - Static method in class uk.ac.ic.doc.rodex.p2p.DirectoryServicePeer
Returns a single instance of the dsp
getInstance(AutoMedPeer, int) - Static method in class uk.ac.ic.doc.rodex.p2p.protocol.HEP
 
getInstance(AutoMedPeer) - Static method in class uk.ac.ic.doc.rodex.p2p.protocol.SICP
Return a single instance of SICP protocol
getInstance(AutoMedPeer) - Static method in class uk.ac.ic.doc.rodex.p2p.protocol.SRCP
Create a single instance of this class
getInstances() - Method in class uk.ac.ic.doc.automed.matching.SchemaElement
 
getInstancesSorted() - Method in class uk.ac.ic.doc.automed.matching.SchemaElement
Returns the sorted array of the instances of this SchemaElement object.
getInstUID(String, long, long) - Static method in class uk.ac.bbk.dcs.automed.xml.utilities.UIDUtility
 
getInt() - Method in class uk.ac.bbk.dcs.automed.qproc.iql.Cell
 
getInt(int) - Method in class uk.ac.ic.doc.automed.wrappers.AutoMedTuple
Return a particular attribute from a tuple (counting from one) as a 32 bit integer
getIntegerConstructProperty(int, int, String) - Static method in class uk.ac.ic.doc.automed.MDR
 
getIntegerValue(String) - Method in class uk.ac.ic.doc.automed.util.db.DBRecord
 
getIntegratedSchema() - Method in class uk.ac.ic.doc.automed.editor.MatchingTool
 
getInternalQuery(boolean) - Method in class uk.ac.ic.doc.rodex.qproc.QueryAnalyser
Create the internal representation of the original query in which each query scheme
is replaced by a unique object-id assigned to it in the repository.
getInternalQuery(boolean) - Method in class uk.ac.ic.doc.rodex.qproc.QueryRewriteProcessor
Rewrite formulated query string so that each scheme (sub-goal) is replaced by
a unique scheme-obj-id in the repository.
getIntProperty(String, String) - Static method in class uk.ac.ic.doc.automed.p2p.AppToolKit
 
getIntProperty(String, String) - Method in class uk.ac.ic.doc.automed.p2p.AppToolKit.NodeConfig
 
getIOTime() - Method in class uk.ac.bbk.dcs.automed.xml.XMLRestructurer
 
getIPAddress(String) - Static method in class uk.ac.ic.doc.automed.p2p.util.Util
A static utility method to perform reverse name lookup
getIQL() - Method in interface uk.ac.bbk.dcs.automed.qproc.translators.Translator
 
getIQL() - Method in class uk.ac.bbk.dcs.automed.qproc.translators.xquery.XQuery2IQL
 
getIQLConsNameFromIQLVar(String) - Method in class uk.ac.bbk.dcs.automed.xml.wrappers.IQL2XQuery
 
getIQLConsNameFromXPath(String) - Method in class uk.ac.bbk.dcs.automed.xml.wrappers.IQL2XQuery
 
GetIQLSource - Class in uk.ac.bbk.dcs.automed.dataWarehousing.util
 
GetIQLSource() - Constructor for class uk.ac.bbk.dcs.automed.dataWarehousing.util.GetIQLSource
 
getIQLString() - Method in class uk.ac.ic.doc.rodex.qproc.QueryResultProducer
Convert the result set into IQL's string for display
getIQLString(List) - Static method in class uk.ac.ic.doc.rodex.qproc.QueryResultProducer
Return a String representation of a list of ASG tuples
getIsDataEvolution() - Method in class uk.ac.bbk.dcs.automed.evolution1.Evolution
 
getIsRepair() - Method in class uk.ac.bbk.dcs.automed.evolution.schemaModelEvolution.SMEvolution
 
getIsRepair() - Method in class uk.ac.bbk.dcs.automed.evolution1.Evolution
 
getIsRepair() - Method in class uk.ac.bbk.dcs.automed.evolution2.schemaEvolution.SchemaEvolution
 
getIsSchemaEvolution() - Method in class uk.ac.bbk.dcs.automed.evolution1.Evolution
 
getJob() - Method in class uk.ac.ic.doc.automed.util.queue.Queue
Check if there are any jobs.
getKeepAliveStatus() - Method in class uk.ac.ic.doc.automed.p2p.AutoMedMessagingHelper
Check keep-alive status
getKeepAliveTime() - Static method in class uk.ac.ic.doc.automed.p2p.AppToolKit
 
getKeepAliveTime() - Method in class uk.ac.ic.doc.automed.p2p.AppToolKit.NodeConfig
Peer's keep-alive time
getKey() - Method in class uk.ac.bbk.dcs.automed.qproc.iql.ASG
 
getKey() - Method in class uk.ac.bbk.dcs.automed.qproc.iql.Cell
 
getKey() - Method in class uk.ac.bbk.dcs.automed.qproc.reformulate.ViewKey
 
getKey() - Method in class uk.ac.ic.doc.automed.p2p.PathwayDescription
 
getKey() - Method in class uk.ac.ic.doc.automed.p2p.tree.AutoMedObject
 
getKey() - Method in class uk.ac.ic.doc.automed.p2p.tree.Reference
 
getKey() - Method in class uk.ac.ic.doc.automed.qproc.ASGQuery
 
getKey(Object) - Method in class uk.ac.ic.doc.automed.qproc.cache.CacheObjectBinding
 
getKey() - Method in class uk.ac.ic.doc.automed.reps.AccessMethod
 
getKey() - Method in class uk.ac.ic.doc.automed.reps.Construct
Implements PersistentObject interface Added by mdle on 20/10/2005
getKey() - Method in class uk.ac.ic.doc.automed.reps.ConstructConstraint
Implements the PersistentObject interface
getKey() - Method in class uk.ac.ic.doc.automed.reps.ConstructScheme
Implements PersistentObject interface Added by mdle on 20/10/2005
getKey() - Method in class uk.ac.ic.doc.automed.reps.DataSource
 
getKey() - Method in class uk.ac.ic.doc.automed.reps.Model
Implements the PersistentObject interface
getKey() - Method in class uk.ac.ic.doc.automed.reps.Pathway
 
getKey() - Method in class uk.ac.ic.doc.automed.reps.PathwayAbstraction
 
getKey() - Method in interface uk.ac.ic.doc.automed.reps.PersistentObject
 
getKey() - Method in class uk.ac.ic.doc.automed.reps.Schema
 
getKey() - Method in class uk.ac.ic.doc.automed.reps.SchemaObject
 
getKey() - Method in class uk.ac.ic.doc.automed.reps.Scheme
 
getKey() - Method in class uk.ac.ic.doc.automed.reps.Transformation
 
getKey() - Method in class uk.ac.ic.doc.automed.reps.TransformationAbstraction
 
getKey() - Method in class uk.ac.ic.doc.automed.reps.TypeHierarchy
Implements the PersistentObject interface
getKey() - Method in class uk.ac.ic.doc.automed.reps.TypeHierarchy.TypeObject
Implements the PersistentObject interface
getKey(Object) - Method in class uk.ac.ic.doc.automed.util.persist.AbstractObjectBinding
Return a PersistentKey object from the value object
getKey(XSDOMObject, XSDOMObject) - Method in class uk.ac.ic.doc.automed.xmlschema.JTreeTransform
 
getKey() - Method in class uk.ac.ic.doc.rodex.p2p.messages.applicationlayer.AuthenticationTuple
 
getKey() - Method in class uk.ac.ic.doc.rodex.p2p.messages.applicationlayer.SchemaAccessibility
 
getKey() - Method in class uk.ac.ic.doc.rodex.qproc.QualityIndicator
 
getKey() - Method in class uk.ac.ic.doc.rodex.qproc.QueryDescription
 
getKey() - Method in class uk.ac.ic.doc.rodex.reps.AttributeDomain
 
getKeyId() - Method in class uk.ac.ic.doc.automed.reps.PersistentKey
 
getKeyObject() - Method in class uk.ac.ic.doc.automed.util.persist.PersistentKey
Return the actual database entry object of the key
getKeyRef() - Method in class uk.ac.ic.doc.automed.wrappers.xsdomobject.XSDOMObject
 
getKnownSchema(int) - Static method in class uk.ac.ic.doc.automed.reps.Schema
Use to obtain a schema that is known to exist, and therefore no sense in trapping NotFoundException.
getKnownSchema(String) - Static method in class uk.ac.ic.doc.automed.reps.Schema
Use to obtain a schema that is known to exist, and therefore no sense in trapping NotFoundException.
getKnownSchemaObject(int) - Static method in class uk.ac.ic.doc.automed.reps.SchemaObject
Similiar to SchemaObject.getSchemaObject(int) except that it throws a runtime exception InconsistentException if the obid is not found.
getKnownSchemaObject(int) - Method in class uk.ac.ic.doc.automed.reps.Transformation
Use instead of Transformation.getSchemaObject(int) where you are sure that the sid is valid for the transformation.
getKnownSchemaObject(Schema) - Method in class uk.ac.ic.doc.automed.reps.Transformation
Use instead of Transformation.getSchemaObject(Schema) where you are sure that the Schema is valid for the transformation.
getKnownTransformation(Schema, Schema) - Static method in class uk.ac.ic.doc.automed.reps.Transformation
 
getLabel() - Method in class uk.ac.ic.doc.automed.editor.autolayout.AutoLayoutPositionable
Get the text used to label this SchemaObject.
getLabel() - Method in interface uk.ac.ic.doc.automed.editor.Positionable
 
getLabel() - Method in class uk.ac.ic.doc.automed.reps.Construct
Get the text used to label this Construct.
getLabel() - Method in class uk.ac.ic.doc.automed.reps.Model
Get the text used to label this Model.
getLabel() - Method in class uk.ac.ic.doc.automed.reps.Network
Get the text used to label this Network.
getLabel() - Method in class uk.ac.ic.doc.automed.reps.Schema
Get the text used to label this Schema.
getLabel() - Method in class uk.ac.ic.doc.automed.reps.SchemaObject
Get the text used to label this SchemaObject.
getLabelPosition() - Method in interface uk.ac.ic.doc.automed.editor.Positionable
 
getLabelPosition() - Method in class uk.ac.ic.doc.automed.reps.Construct
 
getLabelPosition() - Method in class uk.ac.ic.doc.automed.reps.Model
 
getLabelPosition() - Method in class uk.ac.ic.doc.automed.reps.Network
 
getLabelPosition() - Method in class uk.ac.ic.doc.automed.reps.Schema
 
getLabelPosition() - Method in class uk.ac.ic.doc.automed.reps.SchemaObject
 
getLabelXPos() - Method in interface uk.ac.ic.doc.automed.editor.Positionable
 
getLabelXPos() - Method in class uk.ac.ic.doc.automed.reps.Construct
 
getLabelXPos() - Method in class uk.ac.ic.doc.automed.reps.Model
 
getLabelXPos() - Method in class uk.ac.ic.doc.automed.reps.Network
 
getLabelXPos() - Method in class uk.ac.ic.doc.automed.reps.Schema
 
getLabelXPos() - Method in class uk.ac.ic.doc.automed.reps.SchemaObject
 
getLabelYPos() - Method in interface uk.ac.ic.doc.automed.editor.Positionable
 
getLabelYPos() - Method in class uk.ac.ic.doc.automed.reps.Construct
 
getLabelYPos() - Method in class uk.ac.ic.doc.automed.reps.Model
 
getLabelYPos() - Method in class uk.ac.ic.doc.automed.reps.Network
 
getLabelYPos() - Method in class uk.ac.ic.doc.automed.reps.Schema
 
getLabelYPos() - Method in class uk.ac.ic.doc.automed.reps.SchemaObject
 
getLastExtSchema() - Method in class uk.ac.ic.doc.automed.reps.Pathway
Returns the last extentional Schema in the pathway.
getLastKeyString() - Method in class uk.ac.ic.doc.rodex.p2p.Peer
 
getLastRouteString() - Method in class uk.ac.ic.doc.rodex.p2p.Peer
 
getLastUpdate() - Method in class uk.ac.ic.doc.automed.p2p.directory.PeerDescription
 
getLeafs() - Method in class uk.ac.ic.doc.automed.reps.Network
 
getLeastRestrictiveMapping(QuerySubGoal, List) - Method in class uk.ac.ic.doc.rodex.qproc.MiniConQueryRewriter
Check for sub-goal mapping between a query's sub-goal and a view.
getLengthRange() - Method in class uk.ac.ic.doc.automed.matching.SchemaElement
 
getLevel(Node, int) - Static method in class uk.ac.bbk.dcs.automed.xml.utilities.XMLUtilities
Returns all the nodes in a given level.
getLine() - Method in class uk.ac.bbk.dcs.automed.qproc.annotate.grammars.schemes.SimpleCharStream
Deprecated.  
getLine() - Method in class uk.ac.bbk.dcs.automed.qproc.annotate.grammars.simpleComp.SimpleCharStream
Deprecated.  
getLine() - Method in class uk.ac.bbk.dcs.automed.qproc.annotate.grammars.simpleCompAppend.SimpleCharStream
Deprecated.  
getLine() - Method in class uk.ac.bbk.dcs.automed.qproc.annotate.grammars.simpleCompAppendMonus.SimpleCharStream
Deprecated.  
getLine() - Method in class uk.ac.bbk.dcs.automed.qproc.translators.xquery.SimpleCharStream
Deprecated.  
getLinegeData() - Method in class uk.ac.bbk.dcs.automed.dataWarehousing.dlt.Lineage
 
getLinkAddress() - Method in class uk.ac.ic.doc.rodex.p2p.protocol.SICP
Return the IP address of the network interface which connects a peer to the network
getLocalId() - Method in class uk.ac.ic.doc.automed.reps.PersistentKey
 
getLocation() - Method in class uk.ac.ic.doc.automed.xml.XMLToken
 
getLocationPad() - Method in class uk.ac.ic.doc.automed.xml.XMLToken
 
getLogger() - Static method in class uk.ac.bbk.dcs.automed.qproc.QProcLogger
 
getLogger(String) - Static method in class uk.ac.ic.doc.automed.util.LogController
Customise the logger
getLoggingMessage(String, String, String) - Static method in class uk.ac.ic.doc.automed.p2p.util.Util
 
getLogicalOptimisedQuery() - Method in class uk.ac.ic.doc.rodex.qproc.QueryMediator
 
getLogServerAddress() - Static method in class uk.ac.ic.doc.automed.p2p.AppToolKit
 
getLogServerAddress() - Method in class uk.ac.ic.doc.automed.p2p.AppToolKit.NodeConfig
 
getLogServerPort() - Static method in class uk.ac.ic.doc.automed.p2p.AppToolKit
 
getLogServerPort() - Method in class uk.ac.ic.doc.automed.p2p.AppToolKit.NodeConfig
 
getLower() - Method in class uk.ac.ic.doc.automed.reps.ConstructScheme
Returns the lower bound indicating the minimum occurence of the ConstructScheme.
getMainClasses() - Method in class uk.ac.ic.doc.automed.p2p.tree.Root
 
getMassPotential() - Method in class uk.ac.ic.doc.automed.matching.UncertainSchemaElementPair
Returns the mass potential of this pair.
getMaterialisedFile() - Method in class uk.ac.bbk.dcs.automed.xml.materialisation.Materialiser
 
getMaterialisedFile() - Method in class uk.ac.bbk.dcs.automed.xml.materialisation.XMLDSSMaterialiser
 
getMaterializedSource() - Method in class uk.ac.bbk.dcs.automed.dataWarehousing.dlt.TransfStep
 
getMax() - Method in class uk.ac.ic.doc.automed.matching.Range
 
getMaximum(double[]) - Static method in class uk.ac.ic.doc.automed.matching.Util
 
getMaxOccurs() - Method in class uk.ac.ic.doc.automed.wrappers.xsdomobject.XSDOMObject
 
getMDR_DataSourceName() - Static method in class uk.ac.ic.doc.automed.MDR
Deprecated. use MDR.getDataSourceName() instead
getMediatorInstance() - Static method in class uk.ac.ic.doc.rodex.qproc.QueryMediator
Create a singleton mediator object
getMedium(double[]) - Static method in class uk.ac.ic.doc.automed.matching.Util
 
getMessage() - Method in exception uk.ac.bbk.dcs.automed.qproc.annotate.grammars.schemes.ParseException
This method has the standard behavior when this object has been created using the standard constructors.
getMessage() - Method in error uk.ac.bbk.dcs.automed.qproc.annotate.grammars.schemes.TokenMgrError
You can also modify the body of this method to customize your error messages.
getMessage() - Method in exception uk.ac.bbk.dcs.automed.qproc.annotate.grammars.simpleComp.ParseException
This method has the standard behavior when this object has been created using the standard constructors.
getMessage() - Method in error uk.ac.bbk.dcs.automed.qproc.annotate.grammars.simpleComp.TokenMgrError
You can also modify the body of this method to customize your error messages.
getMessage() - Method in exception uk.ac.bbk.dcs.automed.qproc.annotate.grammars.simpleCompAppend.ParseException
This method has the standard behavior when this object has been created using the standard constructors.
getMessage() - Method in error uk.ac.bbk.dcs.automed.qproc.annotate.grammars.simpleCompAppend.TokenMgrError
You can also modify the body of this method to customize your error messages.
getMessage() - Method in exception uk.ac.bbk.dcs.automed.qproc.annotate.grammars.simpleCompAppendMonus.ParseException
This method has the standard behavior when this object has been created using the standard constructors.
getMessage() - Method in error uk.ac.bbk.dcs.automed.qproc.annotate.grammars.simpleCompAppendMonus.TokenMgrError
You can also modify the body of this method to customize your error messages.
getMessage() - Method in exception uk.ac.bbk.dcs.automed.qproc.translators.xquery.ParseException
This method has the standard behavior when this object has been created using the standard constructors.
getMessage() - Method in error uk.ac.bbk.dcs.automed.qproc.translators.xquery.TokenMgrError
You can also modify the body of this method to customize your error messages.
getMessage(String, String, String, String, Map) - Static method in class uk.ac.ic.doc.automed.p2p.util.Util
 
getMessageBytes(String, String, Map, String, String) - Static method in class uk.ac.ic.doc.automed.p2p.util.Util
An utility method to get byte-representation of an XML message
This method is used in UDP communication
getMessageBytes(AbstractMessage) - Static method in class uk.ac.ic.doc.automed.p2p.util.Util
An overloading method of getMessageBytes(String performative, String context, Map content)
to return an array of bytes for an AbstractMessage object
getMessageFromBytes(byte[]) - Static method in class uk.ac.ic.doc.automed.p2p.util.Util
An utility method to construct an AbstractMessage from an array of
bytes This method is used in UDP communication
getMessageFromInput(InputStream) - Static method in class uk.ac.ic.doc.automed.p2p.util.Util
 
getMessageHandler() - Method in class uk.ac.ic.doc.automed.p2p.AutoMedPeer
 
getMessagingHelper() - Method in class uk.ac.ic.doc.automed.p2p.AutoMedPeer
Return reference to the AutoMedMessagingHelper object
getMetaData() - Method in class uk.ac.ic.doc.automed.p2p.directory.ModelDescription
 
getMetaData() - Method in interface uk.ac.ic.doc.automed.p2p.directory.P2PDirectoryObject
 
getMetaData() - Method in class uk.ac.ic.doc.automed.p2p.directory.PeerDescription
 
getMetaData() - Method in class uk.ac.ic.doc.automed.p2p.directory.SchemaDescription
 
getMID() - Method in class uk.ac.ic.doc.automed.reps.Model
Returns the repository identifer of the model.
getMID() - Method in class uk.ac.ic.doc.automed.reps.TypeHierarchy.TypeObject
Get the id of the model the type comes from
getMilliseconds(Date) - Static method in class uk.ac.ic.doc.automed.util.DateUtil
Convert a Date object into the number of milliseconds from start of the clock
getMin() - Method in class uk.ac.ic.doc.automed.matching.Range
 
getMinimum(double[]) - Static method in class uk.ac.ic.doc.automed.matching.Util
 
getMinimumCoverage(List, QueryAnalyser) - Method in class uk.ac.ic.doc.rodex.qproc.MiniConQueryRewriter
Check that a query contains certain variables in its head and if not it
must contains all related sub-goals
getMinimumCoverage(List, QueryAnalyser, Map) - Method in class uk.ac.ic.doc.rodex.qproc.MiniConQueryRewriterAdaptive
Check that a query contains certain variables in its head and if not it
must contains all related sub-goals
getMinOccurs() - Method in class uk.ac.ic.doc.automed.wrappers.xsdomobject.XSDOMObject
 
getMinutes() - Method in class uk.ac.bbk.dcs.automed.qproc.iql.Cell
 
getModel() - Method in class uk.ac.bbk.dcs.automed.hdmstore.HdmWrapperFactory
 
getModel() - Method in class uk.ac.bbk.dcs.automed.xml.wrappers.XMLWrapperFactory
 
getModel(String) - Method in class uk.ac.ic.doc.automed.p2p.directory.P2PDirectoryRepository
Get a model structure from the database
getModel() - Method in class uk.ac.ic.doc.automed.reps.Construct
Return the Model to which this Construct belongs
getModel(String) - Static method in class uk.ac.ic.doc.automed.reps.Model
Returns a reference to the Model with the given modelName.
getModel(int) - Static method in class uk.ac.ic.doc.automed.reps.Model
Returns a reference to the Model with the given MID.
getModel() - Method in class uk.ac.ic.doc.automed.wrappers.AutoMedWrapperFactory
Return the source oriented Model used to represent the Schema of the datasource.
getModel() - Method in class uk.ac.ic.doc.automed.wrappers.CSVWrapperFactory
Return the CSV model from the Automed MDR database
getModel() - Method in class uk.ac.ic.doc.automed.wrappers.HDMWrapperFactory
Return the HDM model from the Automed MDR database
getModel() - Method in class uk.ac.ic.doc.automed.wrappers.P2PWrapperFactory
Broken!! Until the P2P protocol package supports transfer of models this (incorrectly) returns null.
getModel() - Method in class uk.ac.ic.doc.automed.wrappers.SQLWrapperFactory
Return the `raw' relational Model used to represent the Schema for the SQL datasource wrapper.
getModel() - Method in class uk.ac.ic.doc.automed.wrappers.UMLWrapperFactory
Return the UML model from the Automed MDR database
getModel() - Method in class uk.ac.ic.doc.automed.wrappers.XMLSchemaWrapperFactory
Return the XML Schema model from the Automed MDR database
getModel() - Method in class uk.ac.ic.doc.automed.wrappers.YattaWrapperFactory
Return the source oriented Model, YATTA Model, used to represent the semistructured datasource.
getModelBaseName() - Method in class uk.ac.ic.doc.automed.wrappers.AutoMedWrapperFactory
Return text used as basis for generating Model names
getModelByName(String) - Static method in class uk.ac.ic.doc.automed.MDR
 
getModelDescription() - Method in class uk.ac.ic.doc.automed.reps.Model
Returns a description of the model, each construct along with their schemes is listed in a way suitable for printing.
getModelDescription(boolean) - Method in class uk.ac.ic.doc.automed.reps.Model
Returns a description of the model, each construct along with its schemes are listed in a way suitable for printing.
getModelForSchema(String) - Static method in class uk.ac.ic.doc.automed.MDR
Retrieve a model for a schema
getModelMap() - Method in class uk.ac.ic.doc.automed.p2p.tree.ObjectBuilder
Getter for model map object
getModelName() - Method in class uk.ac.bbk.dcs.automed.qproc.iql.SchemeInfo
 
getModelName(int) - Static method in class uk.ac.ic.doc.automed.MDR
 
getModelName() - Method in class uk.ac.ic.doc.automed.wrappers.AutoMedWrapperFactory
Find the name of the Model that will be used when a new wrapper is generated
getModelNames() - Static method in class uk.ac.ic.doc.automed.MDR
Gets a list of all modelling language names in the MDR
getModelNames(String) - Method in class uk.ac.ic.doc.automed.p2p.directory.P2PDirectoryRepository
Get all models that are associated to a particular schema
getModels() - Static method in class uk.ac.ic.doc.automed.MDR
Gets a list of all modelling language identifiers in the MDR
getModels(String) - Method in class uk.ac.ic.doc.automed.p2p.MessageHandler
Ask P2P directory for one or more model objects
getModels(String) - Method in class uk.ac.ic.doc.automed.p2p.SchemaGetter
For each model name that does not exist in the local database, get it from the directory
getModels() - Static method in class uk.ac.ic.doc.automed.reps.Model
Returns an array of all models.
getModels() - Method in class uk.ac.ic.doc.automed.reps.Schema
Get all associated models to a schema object.
getModelsAsString() - Method in class uk.ac.ic.doc.automed.reps.Schema
Works similar to Schema.getModels() method except that this method returns a delimited string of Models' names
getModelsHelp - Static variable in class uk.ac.ic.doc.automed.editor.Editor
 
getModelsSyntax - Static variable in class uk.ac.ic.doc.automed.editor.Editor
 
getModelString() - Method in class uk.ac.ic.doc.rodex.p2p.messages.applicationlayer.SchemaAccessibility
 
getModelTree() - Method in class uk.ac.ic.doc.automed.p2p.PathwayDescription
Return the models tree dmle 14/11/2005
GetMonth - Class in uk.ac.bbk.dcs.automed.qproc.functions.date
Provides a mapping between number and word representation for the months.
GetMonth() - Constructor for class uk.ac.bbk.dcs.automed.qproc.functions.date.GetMonth
 
getMonth() - Method in class uk.ac.bbk.dcs.automed.qproc.iql.Cell
 
getMulticastHost(String, RequestListener, int, Properties) - Static method in class uk.ac.ic.doc.automed.p2p.communication.ServerFactory
Create a new instance of a MulticastServer
getMyKeys() - Method in class uk.ac.ic.doc.rodex.p2p.Peer
 
getMySchemas() - Method in class uk.ac.ic.doc.automed.p2p.PeerCache
 
getMyValues(ID) - Method in class uk.ac.ic.doc.rodex.p2p.Peer
 
getMyValues(String) - Method in class uk.ac.ic.doc.rodex.p2p.Peer
 
getName() - Method in class uk.ac.bbk.dcs.automed.evolution2.ExtendedConstruct
 
getName() - Method in class uk.ac.bbk.dcs.automed.graph.DirectedGraphNode
 
getName() - Method in class uk.ac.bbk.dcs.automed.graph.TreeNode
 
getName() - Method in class uk.ac.bbk.dcs.automed.qproc.annotate.AbstractQueryAnnotationProvider
 
getName() - Method in class uk.ac.bbk.dcs.automed.qproc.annotate.FragmentProcessor
 
getName() - Method in interface uk.ac.bbk.dcs.automed.qproc.annotate.QueryAnnotationProvider
Return a unique name of a provider.
getName() - Method in class uk.ac.bbk.dcs.automed.qproc.annotate.StandardQueryAnnotationProvider
 
getName() - Method in class uk.ac.bbk.dcs.automed.qproc.evaluate.Evaluator
 
getName() - Method in class uk.ac.bbk.dcs.automed.qproc.optimise.FoldFunction
 
getName() - Method in class uk.ac.bbk.dcs.automed.qproc.optimise.StandardOptimisationProvider
 
getName() - Method in class uk.ac.bbk.dcs.automed.qproc.reformulate.AtomicViewMap
 
getName() - Method in class uk.ac.bbk.dcs.automed.qproc.reformulate.CompositeViewMap
 
getName() - Method in class uk.ac.bbk.dcs.automed.xml.xmldssGraph.XMLDSSGraphAttribute
 
getName() - Method in class uk.ac.ic.doc.automed.matching.relationships.Compatibility
 
getName() - Method in class uk.ac.ic.doc.automed.matching.relationships.Disjointness
 
getName() - Method in class uk.ac.ic.doc.automed.matching.relationships.Equivalence
 
getName() - Method in class uk.ac.ic.doc.automed.matching.relationships.Incompatibility
 
getName() - Method in class uk.ac.ic.doc.automed.matching.relationships.Overlapness
 
getName() - Method in class uk.ac.ic.doc.automed.matching.relationships.SemanticRelationship
Returns the name of the SemanticRelationship object
getName() - Method in class uk.ac.ic.doc.automed.matching.relationships.Subset
 
getName() - Method in class uk.ac.ic.doc.automed.matching.relationships.Superset
 
getName() - Method in class uk.ac.ic.doc.automed.matching.SchemaElement
Returns the name of the schema element.
getName() - Method in class uk.ac.ic.doc.automed.p2p.AppToolKit.NodeConfig
Getters
getName() - Method in class uk.ac.ic.doc.automed.p2p.AutoMedPeer
 
getName() - Method in class uk.ac.ic.doc.automed.p2p.AutoMedPeer.PeerProcessDescription
 
getName() - Method in class uk.ac.ic.doc.automed.p2p.directory.ModelDescription
Get the name of the public Schmea being described.
getName() - Method in class uk.ac.ic.doc.automed.p2p.directory.PeerDescription
Get the logical name of the Peer being described.
getName() - Method in class uk.ac.ic.doc.automed.p2p.directory.SchemaDescription
Get the name of the public Schmea being described.
getName() - Method in interface uk.ac.ic.doc.automed.qproc.cache.CachePolicy
Return a default name of a cache policy
getName() - Method in class uk.ac.ic.doc.automed.qproc.cache.CachePolicy2
 
getName() - Method in class uk.ac.ic.doc.automed.qproc.cache.CachePolicy3
 
getName() - Method in class uk.ac.ic.doc.automed.qproc.cache.DefaultCachePolicy
 
getName() - Method in interface uk.ac.ic.doc.automed.qproc.eval.QueryEvaluationProvider
Return a unique name of a provider.
getName() - Method in interface uk.ac.ic.doc.automed.qproc.opti.QueryOptimisationProvider
Return a unique name of a provider.
getName() - Method in class uk.ac.ic.doc.automed.reps.Construct
Returns the name of the construct.
getName() - Method in class uk.ac.ic.doc.automed.reps.DataSource
 
getName() - Method in class uk.ac.ic.doc.automed.reps.Model
Returns the name of the model.
getName() - Method in class uk.ac.ic.doc.automed.reps.Network
 
getName() - Method in class uk.ac.ic.doc.automed.reps.Protocol
Returns the name of the protocol.
getName() - Method in class uk.ac.ic.doc.automed.reps.Schema
Find the name of the schema.
getName(int) - Static method in class uk.ac.ic.doc.automed.reps.Schema
Returns the name of a schema from its SID without instantiating it
getName() - Method in class uk.ac.ic.doc.automed.reps.TypeHierarchy.TypeObject
Get the name of the type
getName() - Method in class uk.ac.ic.doc.automed.ssd.Pattern
 
getName() - Method in class uk.ac.ic.doc.automed.ssd.SSDFormat
 
getName() - Method in class uk.ac.ic.doc.automed.util.hashing.OrderPreservedHashing
Unique name of this hash
getName() - Method in interface uk.ac.ic.doc.automed.util.hashing.StringHash
 
getName() - Method in class uk.ac.ic.doc.automed.wrappers.xsdomobject.XSDOMObject
Get the name of this object
getName() - Method in class uk.ac.ic.doc.rodex.p2p.messages.applicationlayer.HelloMsg
Peer's name
getName() - Method in class uk.ac.ic.doc.rodex.p2p.messages.applicationlayer.SchemaAccessibility
 
getName() - Method in class uk.ac.ic.doc.rodex.qproc.QueryVariable
 
getNameIndexDB() - Method in class uk.ac.ic.doc.automed.util.persist.PersistentDBController
Return reference to the secondary database (used for indexing)
getNegativePostconditions() - Method in class uk.ac.ic.doc.automed.tml.TML
 
getNegativePreconditions() - Method in class uk.ac.ic.doc.automed.tml.TML
 
getNestListExtent(String, String) - Method in class uk.ac.bbk.dcs.automed.xml.materialisation.Materialiser
 
getNestListExtent(int, String, String) - Method in class uk.ac.bbk.dcs.automed.xml.materialisation.XMLDSSMaterialiser
 
getNetwork(Schema, String) - Static method in class uk.ac.ic.doc.automed.reps.Network
Returns the complete undirected network that contains schema s.
getNetwork() - Method in class uk.ac.ic.doc.automed.reps.Node
Returns the network this node belongs to
getNetworkHelp - Static variable in class uk.ac.ic.doc.automed.editor.Editor
 
getNetworkNamesHelp - Static variable in class uk.ac.ic.doc.automed.editor.Editor
 
getNetworkNamesSyntax - Static variable in class uk.ac.ic.doc.automed.editor.Editor
 
getNetworks(int) - Static method in class uk.ac.ic.doc.automed.reps.Network
Return a List that contains all Networks held in the repository.
getNetworks(boolean, int) - Static method in class uk.ac.ic.doc.automed.reps.Network
Return a list that contains all Networks held in the repository.
getNetworksHelp - Static variable in class uk.ac.ic.doc.automed.editor.Editor
 
getNetworksSyntax - Static variable in class uk.ac.ic.doc.automed.editor.Editor
 
getNetworkSyntax - Static variable in class uk.ac.ic.doc.automed.editor.Editor
 
getnewId() - Static method in class uk.ac.ic.doc.automed.wrappers.ssdfunctions.generateGID
 
getNextID() - Static method in class uk.ac.ic.doc.automed.util.thread.AsynchThread
Get the next id counter for a new thread
getNextID() - Static method in class uk.ac.ic.doc.automed.util.thread.TimedThread
Get the next id counter for a new thread
getNextToken() - Method in class uk.ac.bbk.dcs.automed.qproc.annotate.grammars.schemes.Schemes
 
getNextToken() - Method in class uk.ac.bbk.dcs.automed.qproc.annotate.grammars.schemes.SchemesTokenManager
 
getNextToken() - Method in class uk.ac.bbk.dcs.automed.qproc.annotate.grammars.simpleComp.SimpleComp
 
getNextToken() - Method in class uk.ac.bbk.dcs.automed.qproc.annotate.grammars.simpleComp.SimpleCompTokenManager
 
getNextToken() - Method in class uk.ac.bbk.dcs.automed.qproc.annotate.grammars.simpleCompAppend.SimpleCompAppend
 
getNextToken() - Method in class uk.ac.bbk.dcs.automed.qproc.annotate.grammars.simpleCompAppend.SimpleCompAppendTokenManager
 
getNextToken() - Method in class uk.ac.bbk.dcs.automed.qproc.annotate.grammars.simpleCompAppendMonus.SimpleCompAppendMonus
 
getNextToken() - Method in class uk.ac.bbk.dcs.automed.qproc.annotate.grammars.simpleCompAppendMonus.SimpleCompAppendMonusTokenManager
 
getNextToken() - Method in class uk.ac.bbk.dcs.automed.qproc.translators.xquery.XQuery2IQL
 
getNextToken() - Method in class uk.ac.bbk.dcs.automed.qproc.translators.xquery.XQuery2IQLTokenManager
 
getNextToken(int, int) - Method in class uk.ac.ic.doc.automed.reps.Syntax.Tokenizer
 
getNextToken(int) - Method in class uk.ac.ic.doc.automed.reps.Syntax.Tokenizer
 
getNextToken() - Method in class uk.ac.ic.doc.automed.reps.Syntax.Tokenizer
 
getNode(int) - Method in class uk.ac.bbk.dcs.automed.graph.DirectedGraph
 
getNode(String) - Method in class uk.ac.bbk.dcs.automed.graph.DirectedGraph
 
getNode(String) - Method in class uk.ac.ic.doc.automed.reps.Network
Returns the network node representing the named schema
getNode(Schema) - Method in class uk.ac.ic.doc.automed.reps.Network
Returns the network node representing the supplied schema
getNode(Node) - Method in class uk.ac.ic.doc.automed.reps.Network
Deprecated.  
getNode(String) - Static method in class uk.ac.ic.doc.automed.reps.Node
returns the node for a schema if one exists or null otherwise
getNode(Schema) - Static method in class uk.ac.ic.doc.automed.reps.Node
returns the node for a schema if one exists or null otherwise
getNodeDepth(Node) - Static method in class uk.ac.bbk.dcs.automed.xml.utilities.XMLUtilities
Returns the depth of node n.
getNodeInstances(String) - Method in class uk.ac.bbk.dcs.automed.hdmstore.HdmStore
Given a node type return all the instances in the HDM store as a LinkedList with elements of type Span, each element representing an instance
getNodeName() - Method in class uk.ac.bbk.dcs.automed.xml.xmldssGraph.XMLDSSGraphElement
 
getNodeOrder(Node) - Static method in class uk.ac.bbk.dcs.automed.xml.utilities.XMLUtilities
 
getNodeOrder() - Method in class uk.ac.bbk.dcs.automed.xml.xmldssGraph.XMLDSSGraphElement
 
getNodeOrder() - Method in class uk.ac.bbk.dcs.automed.xml.xmldssGraph.XMLDSSGraphText
 
getNonAtomicPairRelationships() - Method in class uk.ac.ic.doc.automed.matching.RelationshipExtractor
Returns the relationships of pairs of non-atomic schema elements.
getNonAtomicRelationship(SchemaElementPair) - Method in class uk.ac.ic.doc.automed.matching.RelationshipExtractor
Returns the relationship of the pair of non-atomic schema elements
getNotNullObject(Map, String) - Static method in class uk.ac.ic.doc.automed.p2p.util.Util
 
getNotNullString(Map, String) - Static method in class uk.ac.ic.doc.automed.p2p.util.Util
Retrieve a mandatory field from a message content
getNthCard(int, Object[]) - Method in class uk.ac.ic.doc.automed.editor.drawables.DrawEERRelationshipArc
 
getNthCard(int, Object[]) - Method in class uk.ac.ic.doc.automed.editor.drawables.DrawERRelationshipArc
 
getNumberOfRepositoryInteractions() - Method in class uk.ac.bbk.dcs.automed.xml.XMLRestructurer
 
getNumberOfTransformations() - Method in class uk.ac.bbk.dcs.automed.xml.XMLRestructurer
 
getNumbers(String[]) - Static method in class uk.ac.ic.doc.automed.matching.Util
 
getNumCharRange() - Method in class uk.ac.ic.doc.automed.matching.SchemaElement
 
getNumHosts() - Method in class uk.ac.ic.doc.automed.p2p.overlay.OverlayController
 
getNumOfDistinctInstances() - Method in class uk.ac.ic.doc.automed.matching.SchemaElement
 
getNumOfFunctions(Cell) - Method in class uk.ac.bbk.dcs.automed.qproc.optimise.optimisers.ChooseOptimiser
Get the number of functions in the ASG, if the ASG is a Void Cell, return -1
getNumPathWays() - Method in class uk.ac.ic.doc.automed.p2p.PathwayDescription
return the number of pathways
getNumRange() - Method in class uk.ac.ic.doc.automed.matching.SchemaElement
 
getOBID() - Method in class uk.ac.ic.doc.automed.reps.SchemaObject
Returns the schema object identifier (OBID) of a schema object.
getOBIDBySFIDSPID(int, int) - Static method in class uk.ac.ic.doc.automed.SSMDR
Returns the ID of schemaobject in the SSMDR for the particular ssdformat and ssdpattern.
getOBIDBySPID(int) - Method in class uk.ac.ic.doc.automed.ssd.SSDFormat
 
getObjectBetweenMeAnd(AutoLayoutSchemaObject) - Method in class uk.ac.ic.doc.automed.editor.autolayout.AutoLayoutSchemaObject
Return object which connect this and obj.
getObjectBinding() - Method in class uk.ac.ic.doc.automed.qproc.cache.DefaultQueryCache
 
getObjectBinding() - Method in interface uk.ac.ic.doc.automed.util.persist.Persistence
Return an instance of object binding for serialisation
getObjectBinding() - Method in class uk.ac.ic.doc.automed.util.persist.PersistentDB
Return reference to the object binder
getObjectClass() - Method in class uk.ac.ic.doc.automed.p2p.tree.AutoMedObject
 
getObjectClass() - Method in class uk.ac.ic.doc.automed.p2p.tree.Reference
 
getObjectClass() - Method in class uk.ac.ic.doc.automed.reps.PersistentKey
 
getObjectFromSerialisation(byte[]) - Static method in class uk.ac.ic.doc.automed.util.ObjectToolKit
 
getObjectID() - Method in exception uk.ac.ic.doc.automed.IntegrityException
Return the object indentifier of the the object, that the manipulation of caused this exception.
getObjectSchemeNames(int) - Static method in class uk.ac.ic.doc.automed.STR
Returns an Object array of an object's scheme.
getObjectSchemeNamesString(int) - Static method in class uk.ac.ic.doc.automed.STR
Returns the scheme representation (of type String}) of an object's scheme.
getObjectSerialisation(Serializable) - Static method in class uk.ac.ic.doc.automed.util.ObjectToolKit
Return the byte array representation of a serializable ojbect
getObjectsFor(MainFrame) - Method in class uk.ac.ic.doc.automed.p2p.gui.PeerApplication
 
getObjectType() - Method in class uk.ac.ic.doc.automed.p2p.gui.AllSchemasFrame
 
getObjectType() - Method in class uk.ac.ic.doc.automed.p2p.gui.MainFrame
 
getObjectType() - Method in class uk.ac.ic.doc.automed.p2p.gui.MySchemasFrame
 
getObjectType() - Method in class uk.ac.ic.doc.automed.p2p.gui.SchemaInfoFrame
 
getoldId() - Static method in class uk.ac.ic.doc.automed.wrappers.ssdfunctions.generateGID
 
getOpenSchemeBracket() - Static method in class uk.ac.ic.doc.automed.reps.Schema
Find what string is used to deliminate the opening of a scheme name, such as the "<<" in "<<person>>" or "<<person,name>>".
getOpenSchemeBracket() - Static method in class uk.ac.ic.doc.automed.STR
Return String used to open schemes
getOperation() - Method in exception uk.ac.ic.doc.automed.IntegrityException
Return the operation attempted on the object that caused this exception.
getOperation() - Method in class uk.ac.ic.doc.rodex.p2p.messages.applicationlayer.SchemaAccessibility
 
getOperator() - Method in class uk.ac.ic.doc.automed.wrappers.SchemeQuery
Return the operator type that this query node represents.
getOperator() - Method in class uk.ac.ic.doc.rodex.qproc.QueryFunction
 
getOptimisationAnnotation() - Method in class uk.ac.bbk.dcs.automed.qproc.iql.Cell
 
getOptimisationState() - Method in class uk.ac.bbk.dcs.automed.qproc.QueryProcessorConfiguration
Return the optimisation state
getOptimiser() - Method in class uk.ac.bbk.dcs.automed.qproc.QueryProcessorConfiguration
Return the logical optimiser name
getOption(String) - Method in class uk.ac.ic.doc.automed.wrappers.AutoMedWrapper
Return an option setting.
getOptionalString(Map, String) - Static method in class uk.ac.ic.doc.automed.p2p.util.Util
Retrieve an optional field from a message content
getOptionKeyProtection() - Method in class uk.ac.ic.doc.automed.wrappers.AutoMedWrapper
Return the list of boolean values that indicate if the value associated with a key should be altered by a user application.
getOptionKeys() - Method in class uk.ac.ic.doc.automed.wrappers.AutoMedWrapper
Return the list of options keys that this wrapper understands.
getOpts(String, String[]) - Static method in class uk.ac.ic.doc.automed.Util
 
getOriginalSchemas() - Method in class uk.ac.ic.doc.automed.reps.Transformation
 
getOtherSchema(Schema) - Method in class uk.ac.ic.doc.automed.reps.Transformation
Returns the schemas of the transformation.
getOutgoingEdges() - Method in class uk.ac.bbk.dcs.automed.graph.DirectedGraphNode
 
getOverallTime() - Method in class uk.ac.bbk.dcs.automed.xml.XMLRestructurer
 
getOverlayController() - Static method in class uk.ac.ic.doc.rodex.p2p.Peer
Return the OverlayController for further tasks
getOwner() - Method in class uk.ac.bbk.dcs.automed.xml.xmldssGraph.XMLDSSGraphAttribute
 
getOwnerGraph() - Method in class uk.ac.bbk.dcs.automed.xml.xmldssGraph.XMLDSSGraphElement
 
getPairs() - Method in class uk.ac.ic.doc.automed.matching.Aggregator
Returns an array of SimilarSchemaElementPair objects with their aggregated bidirectional degrees
getParent() - Method in class uk.ac.bbk.dcs.automed.graph.TreeNode
 
getParent() - Method in class uk.ac.bbk.dcs.automed.xml.xmldssGraph.XMLDSSGraphElement
 
getParent() - Method in class uk.ac.bbk.dcs.automed.xml.xmldssGraph.XMLDSSGraphText
 
getParent() - Method in class uk.ac.ic.doc.automed.wrappers.xsdomobject.XSDOMObject
Get the parent of this object
getParentName() - Method in class uk.ac.ic.doc.automed.reps.TypeHierarchy.TypeObject
Get the name of the parent type
getParents() - Method in class uk.ac.ic.doc.automed.reps.Node
If the network this node belongs to is directed then returns all the adjacent nodes that are parents of this node, otherwise its behaviour is defined by the type of network but the parents will be a subset of adjacent.
getParentTagNames() - Method in class uk.ac.ic.doc.automed.xml.XMLWriter
 
getParentTid() - Method in class uk.ac.ic.doc.automed.reps.TypeHierarchy.TypeObject
Get the type id of the parent of this type
getParentType(int) - Static method in class uk.ac.ic.doc.automed.MDR
 
getParentType(String) - Method in class uk.ac.ic.doc.automed.reps.TypeHierarchy
Retrieve the parent TypeHierarchy.TypeObject object of @param typeName from this hierarchy
getPassword() - Method in class uk.ac.ic.doc.automed.reps.AccessMethod
Returns the password of the user, if it exists
getPassword() - Method in class uk.ac.ic.doc.rodex.p2p.messages.applicationlayer.AuthenticationTuple
 
getPassword() - Method in class uk.ac.ic.doc.rodex.p2p.messages.applicationlayer.HelloMsg
 
getPath() - Method in class uk.ac.ic.doc.automed.p2p.messages.applicationlayer.BrokerAllQuery
 
getPathToSource(String, String, String) - Method in class uk.ac.ic.doc.automed.p2p.PathwayGetter
Edited by dmle on 9/11/2005 to cater for multiple pathways
getPathway(PeerDescription) - Method in class uk.ac.ic.doc.automed.p2p.gui.PeerApplication
 
getPathway(String, String, String, String) - Method in class uk.ac.ic.doc.automed.p2p.PathwayGetter
 
getPathwayAbstractDescriptions(String) - Method in class uk.ac.ic.doc.automed.p2p.directory.P2PDirectory
Return a List of PathwayDescription objects, each representing a pathway abstraction
getPathwayAbstractDescriptions(String) - Method in class uk.ac.ic.doc.automed.p2p.directory.P2PDirectoryRepository
Return a list of rows of pathways
getPathwayRequest(String, String, String, String) - Static method in class uk.ac.ic.doc.automed.p2p.util.Util
 
getPathways() - Method in class uk.ac.ic.doc.automed.p2p.tree.AbstractNetwork
 
getPathwayToSourceAbstractRequest(String, String, String) - Static method in class uk.ac.ic.doc.automed.p2p.util.Util
 
getPathwayToSourceRequest(String, String, String) - Static method in class uk.ac.ic.doc.automed.p2p.util.Util
 
getPattern(String) - Method in class uk.ac.ic.doc.automed.editor.PatternWritingTool
 
getPattern() - Method in class uk.ac.ic.doc.automed.matching.modules.bidirectionalmap.Cluster
 
getPattern() - Method in class uk.ac.ic.doc.automed.matching.modules.ElementVectorRepresentation
 
getPattern() - Method in class uk.ac.ic.doc.automed.ssd.SSDFormat
 
getPattern() - Method in class uk.ac.ic.doc.automed.ssd.SSDPattern
 
getPatternByName(String) - Static method in class uk.ac.ic.doc.automed.ssd.Pattern
 
getPatternByName(String) - Static method in class uk.ac.ic.doc.automed.SSMDR
Returns the pattern identifier (PID).
getPatternIDs() - Static method in class uk.ac.ic.doc.automed.SSMDR
Returns the IDs of all the patterns found in the SSMDR.
getPatternName(int) - Static method in class uk.ac.ic.doc.automed.SSMDR
Returns the name of the pattern.
getPatternSize() - Method in class uk.ac.ic.doc.automed.matching.modules.bidirectionalmap.Clusterer
 
getPatternValue() - Method in class uk.ac.ic.doc.automed.ssd.SSDPattern
 
getPatternValue(int) - Static method in class uk.ac.ic.doc.automed.SSMDR
Returns the value (an actual pattern in regular expression) of the pattern.
getPeerAddress() - Method in class uk.ac.ic.doc.automed.p2p.AutoMedPeer
Added by dmle 27/10/2005 to get a peer's IP address
getPeerAddress() - Method in class uk.ac.ic.doc.automed.p2p.directory.PeerEvent
 
getPeerCache() - Method in class uk.ac.ic.doc.automed.p2p.gui.PeerApplication
Return the reference to PeerCache object which stores peer data
getPeerConfig() - Method in class uk.ac.ic.doc.automed.p2p.AutoMedPeer
Return the configuration of the peer
getPeerDaemonPort() - Static method in class uk.ac.ic.doc.automed.p2p.AppToolKit
 
getPeerDaemonPort() - Method in class uk.ac.ic.doc.automed.p2p.AppToolKit.NodeConfig
 
getPeerDescription(String) - Method in class uk.ac.ic.doc.automed.p2p.directory.P2PDirectory
Return reference a PeerDescription object about a registered peer (from the cache) Use this method is you are sure that a peer has successfully been registered
getPeerDescription() - Method in class uk.ac.ic.doc.automed.p2p.directory.SchemaEvent
 
getPeerDescriptions(SchemaDescription) - Method in class uk.ac.ic.doc.automed.p2p.PeerCache
Return a Map of PeerDescriptions for a given SchemaDescription.
getPeerHost() - Method in class uk.ac.ic.doc.automed.p2p.AutoMedPeer
Added by dmle 27/10/2005 to get a peer's host name
getPeerModel() - Method in class uk.ac.ic.doc.automed.p2p.gui.PeerTable
 
getPeerName() - Method in class uk.ac.bbk.dcs.automed.qproc.iql.SchemeInfo
 
getPeerName() - Method in class uk.ac.ic.doc.automed.p2p.directory.PeerEvent
 
getPeerPort(AutoMedPeer.PeerProcessDescription, boolean) - Method in class uk.ac.ic.doc.automed.p2p.AutoMedPeer
 
getPeerPort(String) - Method in class uk.ac.ic.doc.automed.p2p.P2PRegistry
 
getPeers(String) - Method in class uk.ac.ic.doc.automed.p2p.directory.P2PDirectoryRepository
Get a list of peers of a given status.
getPeers() - Method in class uk.ac.ic.doc.automed.p2p.messages.applicationlayer.TellBrokerQuery
 
getPeersImplementing(String) - Method in class uk.ac.ic.doc.automed.p2p.directory.P2PDirectory
 
getPeersImplementing(String) - Method in class uk.ac.ic.doc.automed.p2p.directory.P2PDirectoryRepository
 
getPeersImplementing(String) - Method in class uk.ac.ic.doc.automed.p2p.MessageHandler
 
getPeerState() - Method in class uk.ac.ic.doc.automed.p2p.AutoMedPeer
Return the current state of the peer as managed by PeerStateHandler
getPeerState() - Method in class uk.ac.ic.doc.automed.p2p.state.PeerStateHandler
Return the current peer state
getPerformative() - Method in class uk.ac.ic.doc.automed.p2p.messages.abstractlayer.AbstractMessage
 
getPerformative() - Method in interface uk.ac.ic.doc.automed.p2p.messages.applicationlayer.ApplicationMessage
 
getPerformative() - Method in class uk.ac.ic.doc.automed.p2p.messages.applicationlayer.BrokerAllQuery
 
getPerformative() - Method in class uk.ac.ic.doc.rodex.p2p.messages.applicationlayer.HelloAckMsg
Return the message's performative
getPerformative() - Method in class uk.ac.ic.doc.rodex.p2p.messages.applicationlayer.HelloMsg
Return the message's performative
getPerformative() - Method in class uk.ac.ic.doc.rodex.p2p.messages.applicationlayer.SchemaAdvertMsg
Return the message's performative
getPerformative() - Method in class uk.ac.ic.doc.rodex.p2p.messages.applicationlayer.SchemaRegMsg
Return the message's performative
getPersistentAttributes() - Method in class uk.ac.bbk.dcs.automed.qproc.iql.ASG
 
getPersistentAttributes() - Method in class uk.ac.bbk.dcs.automed.qproc.iql.Cell
 
getPersistentAttributes() - Method in class uk.ac.ic.doc.automed.p2p.PathwayDescription
 
getPersistentAttributes() - Method in class uk.ac.ic.doc.automed.qproc.ASGQuery
 
getPersistentAttributes() - Method in class uk.ac.ic.doc.automed.reps.AccessMethod
 
getPersistentAttributes() - Method in class uk.ac.ic.doc.automed.reps.Construct
Implements PersistentObject interface Added by mdle on 20/10/2005
getPersistentAttributes() - Method in class uk.ac.ic.doc.automed.reps.ConstructConstraint
Implements the PersistentObject interface
getPersistentAttributes() - Method in class uk.ac.ic.doc.automed.reps.ConstructScheme
Implements PersistentObject interface Added by mdle on 20/10/2005
getPersistentAttributes() - Method in class uk.ac.ic.doc.automed.reps.DataSource
 
getPersistentAttributes() - Method in class uk.ac.ic.doc.automed.reps.Model
Implements the PersistentObject interface
getPersistentAttributes() - Method in class uk.ac.ic.doc.automed.reps.Pathway
 
getPersistentAttributes() - Method in class uk.ac.ic.doc.automed.reps.PathwayAbstraction
 
getPersistentAttributes() - Method in interface uk.ac.ic.doc.automed.reps.PersistentObject
 
getPersistentAttributes() - Method in class uk.ac.ic.doc.automed.reps.Schema
 
getPersistentAttributes() - Method in class uk.ac.ic.doc.automed.reps.SchemaObject
 
getPersistentAttributes() - Method in class uk.ac.ic.doc.automed.reps.Scheme
 
getPersistentAttributes() - Method in class uk.ac.ic.doc.automed.reps.Transformation
 
getPersistentAttributes() - Method in class uk.ac.ic.doc.automed.reps.TransformationAbstraction
Only return an abstraction of the transformation
getPersistentAttributes() - Method in class uk.ac.ic.doc.automed.reps.TypeHierarchy
Implements the PersistentObject interface
getPersistentAttributes() - Method in class uk.ac.ic.doc.automed.reps.TypeHierarchy.TypeObject
Implements the PersistentObject interface
getPersistentAttributes() - Method in class uk.ac.ic.doc.rodex.p2p.messages.applicationlayer.AuthenticationTuple
 
getPersistentAttributes() - Method in class uk.ac.ic.doc.rodex.p2p.messages.applicationlayer.SchemaAccessibility
 
getPersistentAttributes() - Method in class uk.ac.ic.doc.rodex.qproc.QualityIndicator
 
getPersistentAttributes() - Method in class uk.ac.ic.doc.rodex.qproc.QueryDescription
 
getPersistentAttributes() - Method in class uk.ac.ic.doc.rodex.reps.AttributeDomain
 
getPersistentHandler() - Method in class uk.ac.ic.doc.automed.qproc.cache.DefaultQueryCache
 
getPhase1Time() - Method in class uk.ac.bbk.dcs.automed.xml.XMLRestructurer
 
getPhase2Time() - Method in class uk.ac.bbk.dcs.automed.xml.XMLRestructurer
 
getPhysicalOptimisedQuery() - Method in class uk.ac.ic.doc.rodex.qproc.QueryMediator
 
getPI() - Method in class uk.ac.ic.doc.automed.wrappers.xsdomobject.Document
Return the PI info
getPID() - Method in class uk.ac.ic.doc.automed.reps.Protocol
Returns the protocol identifier (PID).
getPID() - Method in class uk.ac.ic.doc.automed.ssd.Pattern
 
getPIDByName(String) - Static method in class uk.ac.ic.doc.automed.ssd.Pattern
 
getPIDBySPID(int) - Static method in class uk.ac.ic.doc.automed.SSMDR
Returns the ssdpattern identifier (SPID).
getPK(SchemaObject, ArrayList) - Method in class uk.ac.ic.doc.automed.matching.SQLRelationshipExtractor
Returns a schema object that is the primary key of the specified table.
getPKColumns(SchemaObject, ArrayList) - Method in class uk.ac.ic.doc.automed.matching.SQLRelationshipExtractor
Returns an array of schema objects that are the columns constituting the primary key of the specified table.
getPort() - Method in class uk.ac.ic.doc.automed.p2p.AutoMedPeer.PeerProcessDescription
 
getPort() - Method in class uk.ac.ic.doc.automed.p2p.communication.AbstractDaemon
 
getPort() - Method in class uk.ac.ic.doc.automed.p2p.directory.PeerDescription
 
getPort() - Method in class uk.ac.ic.doc.rodex.p2p.messages.applicationlayer.HelloMsg
Peer's port
getPortRequest(String) - Static method in class uk.ac.ic.doc.automed.p2p.util.Util
 
getPosition() - Method in class uk.ac.ic.doc.automed.editor.autolayout.AutoLayoutPositionable
 
getPosition() - Method in interface uk.ac.ic.doc.automed.editor.Positionable
Return the Point that represents the position of this Positionable in a Panel.
getPosition() - Method in class uk.ac.ic.doc.automed.reps.Construct
 
getPosition() - Method in class uk.ac.ic.doc.automed.reps.Model
 
getPosition() - Method in class uk.ac.ic.doc.automed.reps.Network
 
getPosition() - Method in class uk.ac.ic.doc.automed.reps.Schema
 
getPosition() - Method in class uk.ac.ic.doc.automed.reps.SchemaObject
 
getPositionable() - Method in interface uk.ac.ic.doc.automed.editor.Drawable
 
getPositionable() - Method in class uk.ac.ic.doc.automed.editor.DrawArc
Return the Positionable that this Drawable is providing a graphical representation of.
getPositionable() - Method in class uk.ac.ic.doc.automed.editor.DrawVertex
Return the Positionable that this Drawable is providing a graphical representation of.
getPositionables() - Method in class uk.ac.ic.doc.automed.editor.DrawArc
Return the Positionables that this Drawable is providing a graphical representation of an arc betweem
getPositionedRelativeTo() - Method in interface uk.ac.ic.doc.automed.editor.Positionable
Return the Positionable this is relative to.
getPositionedRelativeTo() - Method in class uk.ac.ic.doc.automed.reps.Construct
 
getPositionedRelativeTo() - Method in class uk.ac.ic.doc.automed.reps.Model
 
getPositionedRelativeTo() - Method in class uk.ac.ic.doc.automed.reps.Network
 
getPositionedRelativeTo() - Method in class uk.ac.ic.doc.automed.reps.Schema
 
getPositionedRelativeTo() - Method in class uk.ac.ic.doc.automed.reps.SchemaObject
 
getPositivePostconditions() - Method in class uk.ac.ic.doc.automed.tml.TML
 
getPositivePreconditions() - Method in class uk.ac.ic.doc.automed.tml.TML
 
getPredicates() - Method in class uk.ac.bbk.dcs.automed.qproc.iql.ASGComprehension
 
getPreferCache() - Method in class uk.ac.ic.doc.rodex.qproc.QualityIndicator
 
getPrettifyAttributes() - Method in class uk.ac.ic.doc.automed.xml.XMLWriter
 
getPrimaryKey() - Method in class uk.ac.ic.doc.automed.wrappers.xsdomobject.ComplexType
Get the primary key for this complexType
getPrimaryKey() - Method in class uk.ac.ic.doc.automed.wrappers.xsdomobject.Element
Get the primary key for this Element
getPrimaryKeyOfTable(Schema, SchemaObject) - Static method in class uk.ac.ic.doc.automed.reps.Utility
Returns the primary key of a table SchemaObject.
getProcessedQuery() - Method in class uk.ac.ic.doc.rodex.qproc.QueryMediator
 
getProfile() - Method in class uk.ac.ic.doc.automed.util.queue.Job
 
getProjected() - Method in class uk.ac.ic.doc.automed.matching.modules.bidirectionalmap.MapDisplay
 
getProperties() - Static method in class uk.ac.ic.doc.automed.p2p.AppToolKit
 
getProperties() - Method in class uk.ac.ic.doc.automed.p2p.AppToolKit.NodeConfig
 
getProperty(String, String) - Static method in class uk.ac.ic.doc.automed.p2p.AppToolKit
 
getProperty(String, String) - Method in class uk.ac.ic.doc.automed.p2p.AppToolKit.NodeConfig
A generic getter to get properties
getProperty(String) - Method in class uk.ac.ic.doc.automed.reps.AccessMethod
Returns a property associated with this AccessMethod.
getProperty(String) - Method in class uk.ac.ic.doc.automed.reps.Transformation
Returns a property associated with this Transformation.
getProtocol() - Method in class uk.ac.ic.doc.automed.reps.AccessMethod
Returns the Protocol used for connecting to the database.
getProtocol(String) - Static method in class uk.ac.ic.doc.automed.reps.Protocol
Returns the Protocol with the given protocolName.
getProtocol(int) - Static method in class uk.ac.ic.doc.automed.reps.Protocol
Returns the Protocol with the given PID.
getProtocol() - Method in class uk.ac.ic.doc.automed.wrappers.AutoMedWrapper
Returns the Protocol associated with the Wrapper.
getProtocolByName(String) - Static method in class uk.ac.ic.doc.automed.STR
Returns the protocol identifier (PID) of the specified protocol name.
getProtocolName() - Method in class uk.ac.bbk.dcs.automed.hdmstore.HdmWrapper
The name of the Protocol in the repository used to represent the HDM store.
getProtocolName() - Method in class uk.ac.bbk.dcs.automed.xml.wrappers.DOMWrapper
 
getProtocolName() - Method in class uk.ac.bbk.dcs.automed.xml.wrappers.EXISTWrapper
 
getProtocolName() - Method in class uk.ac.bbk.dcs.automed.xml.wrappers.SAXWrapper
The name of the Protocolin the repository used to represent JDBC connections.
getProtocolName(int) - Static method in class uk.ac.ic.doc.automed.STR
Returns the name of the given protocol identifier (PID).
getProtocolName() - Method in class uk.ac.ic.doc.automed.wrappers.AutoMedWrapper
The name of the Protocol that this wrapper uses
getProtocolName() - Method in class uk.ac.ic.doc.automed.wrappers.CSVWrapper
 
getProtocolName() - Method in class uk.ac.ic.doc.automed.wrappers.HDMWrapper
The name of the Protocol in the repository used to represent the HDM store.
getProtocolName() - Method in class uk.ac.ic.doc.automed.wrappers.P2PWrapper
The name of the Protocol that this wrapper uses.
getProtocolName() - Method in class uk.ac.ic.doc.automed.wrappers.QueryCacheWrapper
The name of the Protocol for this wrapper
getProtocolName() - Method in class uk.ac.ic.doc.automed.wrappers.SQLWrapper
The name of the Protocol in the repository used to represent JDBC connections.
getProtocolName() - Method in class uk.ac.ic.doc.automed.wrappers.UMLWrapper
 
getProtocolName() - Method in class uk.ac.ic.doc.automed.wrappers.XMLSchemaWrapper
 
getProtocolName() - Method in class uk.ac.ic.doc.automed.wrappers.YattaWrapper
The name of the Protocol in the repository used to represent flat files with a YATTA schema.
getProviderInstance(String, Schema[]) - Static method in class uk.ac.bbk.dcs.automed.qproc.annotate.QueryAnnotationFactory
 
getProviderInstance(String, QueryProcessorConfiguration) - Static method in class uk.ac.bbk.dcs.automed.qproc.evaluate.QueryEvaluationFactory
 
getProviderInstance(String, Schema, Schema[]) - Static method in class uk.ac.bbk.dcs.automed.qproc.optimise.QueryOptimisationFactory
 
getProviderInstance(String) - Static method in class uk.ac.bbk.dcs.automed.qproc.reformulate.QueryReformulationFactory
 
getProviderInstance(String) - Static method in class uk.ac.ic.doc.automed.qproc.eval.QueryEvaluationFactory
Returns a query reformulation provider associated with a given name.
getProviderInstance(String) - Static method in class uk.ac.ic.doc.automed.qproc.opti.QueryOptimisationFactory
Returns a query optimisation provider associated with a given name.
getPublicName() - Method in class uk.ac.ic.doc.automed.xml.XMLWriter
 
getPublicSchema(String) - Method in class uk.ac.ic.doc.automed.p2p.directory.P2PDirectory
Look up schema definition from the repository and
getPublicSchema(String) - Method in class uk.ac.ic.doc.automed.p2p.directory.P2PDirectoryRepository
 
getPublicSchema(String) - Method in class uk.ac.ic.doc.automed.p2p.MessageHandler
Edited by MDLE on 19/10/2005 to get extra model information for a schema
getPublicSchemas() - Method in class uk.ac.ic.doc.automed.p2p.directory.P2PDirectory
 
getPublicSchemas() - Method in class uk.ac.ic.doc.automed.p2p.directory.P2PDirectoryRepository
Edited by dmle 31/10/2005:
Look for schema list in a joined table Return a list of all schemas including active, inactive and flush
getPublicSchemas() - Method in class uk.ac.ic.doc.automed.p2p.PeerCache
Return a Set containing SchemaDescriptions
getPwd() - Method in class uk.ac.ic.doc.automed.p2p.directory.PeerDescription
 
getPwQuality() - Method in class uk.ac.ic.doc.rodex.qproc.QualityIndicator
 
getQEP() - Method in class uk.ac.ic.doc.rodex.p2p.Peer
Return reference to QEP protocol instance
getQEPInstance(AutoMedPeer) - Static method in class uk.ac.ic.doc.rodex.p2p.protocol.QEP
Return a single QEP instance per JVM
getQPCache() - Method in class uk.ac.bbk.dcs.automed.qproc.evaluate.Evaluator
 
getQualifiers() - Method in class uk.ac.bbk.dcs.automed.qproc.iql.ASGComprehension
 
getQuality() - Method in class uk.ac.ic.doc.automed.p2p.PathwayDescription
 
getQuality() - Method in class uk.ac.ic.doc.automed.reps.pathway.PathwayFinderConfiguration
 
getQuality() - Method in class uk.ac.ic.doc.automed.reps.Transformation
 
getQualityIndicator() - Method in class uk.ac.bbk.dcs.automed.qproc.QueryProcessorConfiguration
 
getQualityIndicator() - Method in class uk.ac.ic.doc.rodex.qproc.QueryDescription
 
getQualityMeasure() - Method in class uk.ac.ic.doc.automed.reps.Pathway
 
getQueriedSchemaObjects(QueryAnalyser) - Static method in class uk.ac.ic.doc.rodex.qproc.QueryRewriteProcessor
Return an array of schema objects being queried.
getQuery() - Method in class uk.ac.bbk.dcs.automed.dataWarehousing.dlt.TransfStep
 
getQuery() - Method in class uk.ac.bbk.dcs.automed.evolution2.ExtendedConstruct
 
getQuery() - Method in class uk.ac.ic.doc.automed.matching.SchemaElement
 
getQuery() - Method in class uk.ac.ic.doc.automed.p2p.messages.applicationlayer.BrokerAllQuery
 
getQuery(String) - Method in class uk.ac.ic.doc.automed.qproc.cache.DefaultQueryCache
Check in the cache for a similar query match.
getQuery(ASG) - Method in class uk.ac.ic.doc.automed.qproc.cache.DefaultQueryCache
 
getQuery(String) - Method in interface uk.ac.ic.doc.automed.qproc.cache.IQueryCache
Check in the cache for a similar query match.
getQuery() - Method in class uk.ac.ic.doc.automed.util.db.DBRecordWithConstraints
Return the definition query
getQuery() - Method in class uk.ac.ic.doc.rodex.qproc.QueryDescription
 
getQueryAggregator() - Method in class uk.ac.ic.doc.automed.p2p.AutoMedPeer
Return an instance of IQueryAggregator
getQueryAggregator() - Method in class uk.ac.ic.doc.rodex.p2p.Peer
Return a different instance of IQueryAggregator
getQueryAnalyser() - Method in class uk.ac.ic.doc.rodex.qproc.MiniConQueryRewriter
Return query analyser
getQueryAnalyser() - Method in class uk.ac.ic.doc.rodex.qproc.QueryRewriter
Return reference to the QueryAnalyser object which was used to analyse
the query
getQueryAnalyser() - Method in class uk.ac.ic.doc.rodex.qproc.RangeBasedQueryRewriter
Return query analyser
getQueryBasedOnRangeSemantics(String) - Method in class uk.ac.bbk.dcs.automed.qproc.reformulate.AtomicViewMap
 
getQueryCache() - Static method in class uk.ac.ic.doc.automed.qproc.cache.CacheManager
Return a unique query cache instance
getQueryCache(String, String) - Static method in class uk.ac.ic.doc.automed.qproc.cache.CacheManager
 
getQueryCache() - Static method in class uk.ac.ic.doc.automed.wrappers.AutoMedWrapper
Return a unique reference to the query cache
getQueryCache(String, String) - Static method in class uk.ac.ic.doc.automed.wrappers.AutoMedWrapper
 
getQueryCaches() - Static method in class uk.ac.ic.doc.automed.qproc.cache.CacheManager
Return the set of all query cache objects
getQueryDescription() - Method in class uk.ac.bbk.dcs.automed.qproc.evaluate.Evaluator
 
getQueryDescription() - Method in class uk.ac.ic.doc.automed.qproc.ASGQuery
 
getQueryEvaluationConfig() - Method in class uk.ac.bbk.dcs.automed.qproc.QueryProcessorConfiguration
 
getQueryFunctions() - Method in class uk.ac.bbk.dcs.automed.qproc.iql.ASGComprehensionMiniCon
 
getQueryID() - Method in class uk.ac.bbk.dcs.automed.qproc.evaluate.Evaluator
Return the query ID
getQueryID() - Method in class uk.ac.ic.doc.automed.qproc.ASGQuery
 
getQueryLanguage() - Method in class uk.ac.bbk.dcs.automed.qproc.QueryProcessorConfiguration
Return the query language
getQueryLanguage() - Method in class uk.ac.ic.doc.automed.editor.IQLTool
A method to execute query when it is not found in cache
getQueryLanguageString() - Method in class uk.ac.bbk.dcs.automed.qproc.QueryProcessorConfiguration
 
getQueryMediator() - Method in class uk.ac.ic.doc.automed.p2p.AutoMedPeer
Return query mediator instance
getQueryMetadata() - Method in class uk.ac.ic.doc.rodex.qproc.QueryRewriteProcessor
Return the metadata (QueryAnalyser) object of the external query
getQueryMetadataObjects() - Method in class uk.ac.ic.doc.automed.qproc.cache.DefaultQueryCache
Return an array of metadata objects associated to the query objects
getQueryMetadataObjects() - Method in interface uk.ac.ic.doc.automed.qproc.cache.IQueryCache
Return an array of metadata objects associated to the query objects
getQueryParser(ASG) - Method in class uk.ac.bbk.dcs.automed.xml.wrappers.DOMWrapper
 
getQueryParser(ASG) - Method in class uk.ac.bbk.dcs.automed.xml.wrappers.NXDBWrapper
 
getQueryParser(ASG) - Method in class uk.ac.bbk.dcs.automed.xml.wrappers.SAXWrapper
 
getQueryParser(ASG) - Method in class uk.ac.ic.doc.automed.wrappers.AutoMedWrapper
Return a parser that will accept queries for the wrapper.
getQueryParser(ASG) - Method in class uk.ac.ic.doc.automed.wrappers.P2PWrapper
 
getQueryParser(ASG) - Method in class uk.ac.ic.doc.automed.wrappers.SQLWrapper
 
getQueryRequest(String, String, String, String) - Static method in class uk.ac.ic.doc.automed.p2p.util.Util
 
getQueryResultMessage(AbstractMessage, Map) - Static method in class uk.ac.ic.doc.automed.p2p.util.Util
 
getQueryResults(String, String, String, String) - Method in class uk.ac.ic.doc.automed.p2p.QueryGetter
Use QEP to send query request for execution
getQueryResults(String, String, QueryDescription) - Method in class uk.ac.ic.doc.automed.p2p.QueryGetter
 
getQueryResults(String, String, String, String) - Method in interface uk.ac.ic.doc.automed.qproc.IQueryAggregator
 
getQueryResults(String, String, QueryDescription) - Method in interface uk.ac.ic.doc.automed.qproc.IQueryAggregator
 
getQueryResults(String, String, QueryDescription) - Method in class uk.ac.ic.doc.rodex.p2p.AdvancedQueryGetter
Use QEP to send query request for execution
getQueryRewriterInstance(ASG, List, int) - Static method in class uk.ac.ic.doc.rodex.qproc.QueryRewriter
A factory method to create a new QueryRewriter object
getQueryRewriterInstance(ASG, QueryAnalyser[], int) - Static method in class uk.ac.ic.doc.rodex.qproc.QueryRewriter
An overloading factory method to create a new QueryRewriter object given metadata objects of cached views
getQueryRewriterInstance(ASG, ASG, int) - Static method in class uk.ac.ic.doc.rodex.qproc.QueryRewriter
Special-purpose rewriters
getQueryRewriterInstance(QueryAnalyser, ASG, int) - Static method in class uk.ac.ic.doc.rodex.qproc.QueryRewriter
Special-purpose rewriters
getQuerySchemaObjects(int, String, Schema) - Static method in class uk.ac.ic.doc.automed.tml.TML
Returns an ArrayList of OBIDs referenced by the given query.
getQueryScheme() - Method in class uk.ac.ic.doc.automed.wrappers.YattaQuery
 
getQueryString() - Method in class uk.ac.ic.doc.rodex.qproc.QueryAnalyser
Return the query representation as it was originally passed in
getQuerySubGoals() - Method in class uk.ac.bbk.dcs.automed.qproc.iql.ASGComprehensionMiniCon
 
getQueryType(String) - Static method in class uk.ac.bbk.dcs.automed.dataWarehousing.util.Tools4DW
 
getQueryVariables() - Method in class uk.ac.bbk.dcs.automed.qproc.iql.ASGComprehensionMiniCon
 
getQueryVariables() - Method in class uk.ac.ic.doc.automed.matching.SchemaElement
 
getQueryVariables() - Method in class uk.ac.ic.doc.automed.wrappers.YattaQuery
 
getQueryVariables() - Method in class uk.ac.ic.doc.rodex.qproc.QueryAnalyser
 
getRandomID() - Static method in class uk.ac.ic.doc.automed.reps.PersistentKey
Return a random ID for use as key ID when no alternative is found
getRandomInstance() - Method in class uk.ac.ic.doc.automed.matching.SchemaElement
Returns a random instance of the SchemaElement object.
getRange() - Method in class uk.ac.ic.doc.automed.reps.Transformation
Determine the actual range of a transformation
getRange(ASG) - Method in class uk.ac.ic.doc.rodex.qproc.QueryRewriterResult
 
getRange(ASG) - Method in class uk.ac.ic.doc.rodex.qproc.RangeBasedQueryRewriterResult
 
getRangeDef(String) - Method in class uk.ac.ic.doc.rodex.qproc.QueryRewriterResult
 
getRangeDef(String) - Method in class uk.ac.ic.doc.rodex.qproc.RangeBasedQueryRewriterResult
 
getRangeSemantics() - Method in class uk.ac.bbk.dcs.automed.qproc.QueryProcessorConfiguration
Get range semantics, i.e.
getRangeSemanticsString() - Method in class uk.ac.bbk.dcs.automed.qproc.QueryProcessorConfiguration
 
getRangeSemanticsString(int) - Static method in class uk.ac.bbk.dcs.automed.qproc.QueryProcessorConfiguration
 
getRDBDSSchema() - Method in class uk.ac.bbk.dcs.automed.xml.relational.XMLDSSFromRDB
 
getReadyState() - Method in class uk.ac.ic.doc.automed.p2p.communication.AbstractClient
Always true
getReadyState() - Method in class uk.ac.ic.doc.automed.p2p.communication.AbstractServer
 
getReadyState() - Method in class uk.ac.ic.doc.automed.p2p.directory.FlushTimeHelper
 
getReadyState() - Method in class uk.ac.ic.doc.automed.p2p.directory.HelloTimeHelper
 
getReadyState() - Method in class uk.ac.ic.doc.automed.p2p.directory.HoldTimeHelper
 
getReadyState() - Method in class uk.ac.ic.doc.automed.p2p.directory.P2PDirectory
Is the socket server ready to accept requests?
getReadyState() - Method in class uk.ac.ic.doc.automed.p2p.P2PRegistry
Is the socket server ready to accept requests?
getReadyState() - Method in class uk.ac.ic.doc.automed.util.queue.QueueWorker
 
getReadyState() - Method in interface uk.ac.ic.doc.automed.util.thread.Threadable
 
getReadyState() - Method in class uk.ac.ic.doc.automed.util.thread.TimedThread
Get the state of the handler object (ready or note).
getRealObject() - Method in class uk.ac.ic.doc.automed.p2p.tree.AutoMedObject
 
getRealObject() - Method in class uk.ac.ic.doc.automed.p2p.tree.Reference
 
getReceivedData() - Method in class uk.ac.ic.doc.automed.p2p.communication.UDPClient
Get the data received from server
getReceiver() - Method in class uk.ac.ic.doc.automed.p2p.messages.abstractlayer.AbstractMessage
 
getRecommendOneRequest(String, String, String, Map) - Static method in class uk.ac.ic.doc.automed.p2p.util.Util
 
getRecord(int) - Method in class uk.ac.ic.doc.automed.util.db.DBResultSet
Returns a DBRecord object at the specified index
getRefAction() - Method in class uk.ac.ic.doc.automed.tml.TempTML
 
getRefActionString() - Method in class uk.ac.ic.doc.automed.tml.TempTML
 
getRefConstraint() - Method in class uk.ac.ic.doc.automed.tml.TempTML
 
getRefConstructName() - Method in class uk.ac.ic.doc.automed.tml.TempTML
 
getReferencedAutoLayoutPositionables() - Method in class uk.ac.ic.doc.automed.editor.autolayout.AutoLayoutSchemaObject
Returns the array of AutoLayoutSchemaObject that are referenced directly or indirectly by this AutoLayout* .
getReferencedConstruct(SchemaObject) - Static method in class uk.ac.ic.doc.automed.reps.Utility
Returns the object a SchemaObject is attached to.
getReferencedConstructs(SchemaObject) - Static method in class uk.ac.ic.doc.automed.reps.Utility
Returns all the objects in a SchemaObject's scheme that are correspond to positions in the SchemaObject's scheme of type SCHEME_TYPE_CONSTRUCT that are of NODAL class.
getReferencedField(SchemaObject) - Static method in class uk.ac.ic.doc.automed.reps.Utility
Returns the field of a primary key SchemaObject.
getReferencedObjects(SchemaObject) - Static method in class uk.ac.ic.doc.automed.reps.Utility
Returns all the objects in a SchemaObject's scheme that are correspond to positions in the SchemaObject's scheme of type SCHEME_TYPE_CONSTRUCT.
getReferencedSchemaObjects() - Method in class uk.ac.ic.doc.automed.reps.SchemaObject
Returns the set of SchemaObjects that are referenced directly or indirectly by this SchemaObject.
getReferencedSchemaObjects() - Method in class uk.ac.ic.doc.automed.reps.Transformation
Returns all the schema objects referenced in a transformation.
getReferencedSchemaObjectsInQuery() - Method in class uk.ac.ic.doc.automed.reps.Transformation
Returns all the schema objects referenced in the query of a transformation.
getReferencedTable(SchemaObject) - Static method in class uk.ac.ic.doc.automed.reps.Utility
Returns the table of a primary key SchemaObject.
getReferringObjects(Schema, SchemaObject) - Static method in class uk.ac.ic.doc.automed.reps.Utility
Returns the SchemaObject objects that include object in their schemes.
getRefers() - Method in class uk.ac.ic.doc.automed.xmlschema.output.XPathSelector
Return refers element for a keyref
getRefFromObjName() - Method in class uk.ac.ic.doc.automed.tml.TempTML
 
getRefFunction() - Method in class uk.ac.ic.doc.automed.tml.TempTML
 
getRefModelName() - Method in class uk.ac.ic.doc.automed.tml.TempTML
 
getReformulationSemantics() - Method in class uk.ac.bbk.dcs.automed.qproc.QueryProcessorConfiguration
 
getReformulationSemanticsString() - Method in class uk.ac.bbk.dcs.automed.qproc.QueryProcessorConfiguration
 
getReformulator() - Method in class uk.ac.bbk.dcs.automed.qproc.QueryProcessorConfiguration
Return the reformulator name
getRefSchemaObject() - Method in class uk.ac.ic.doc.automed.reps.Scheme
Returns the SchemaObject that this Scheme wraps
getRefToObjName() - Method in class uk.ac.ic.doc.automed.tml.TempTML
 
getRegisterRequest(String, int) - Static method in class uk.ac.ic.doc.automed.p2p.util.Util
 
getRegistryAddress() - Static method in class uk.ac.ic.doc.automed.p2p.AppToolKit
 
getRegistryAddress() - Method in class uk.ac.ic.doc.automed.p2p.AppToolKit.NodeConfig
 
getRegistryInstance() - Static method in class uk.ac.ic.doc.automed.p2p.P2PRegistry
Start a registry from a Peer
getRegistryPort() - Static method in class uk.ac.ic.doc.automed.p2p.AppToolKit
 
getRegistryPort() - Method in class uk.ac.ic.doc.automed.p2p.AppToolKit.NodeConfig
 
getRelatedTables(ArrayList) - Method in class uk.ac.ic.doc.automed.matching.SQLIntegrator
Returns a SchemaElementPair array of related table pairs in the specified list.
getRelationship(BidirectionalDegree) - Method in class uk.ac.ic.doc.automed.matching.BidirectionalMap
Returns the SemanticRelationship object based on the specified bidirectional degree.
getRelationship(SchemaElementPair) - Method in class uk.ac.ic.doc.automed.matching.Integrator
Returns the relationship in the pair.
getRelationship(SchemaElementPairRelationship[]) - Static method in class uk.ac.ic.doc.automed.matching.RelationshipExtractor
Returns the relationship for the pair of elements.
getRelationship() - Static method in class uk.ac.ic.doc.automed.matching.relationships.Compatibility
Returns an instance of the Compatibility class.
getRelationship() - Static method in class uk.ac.ic.doc.automed.matching.relationships.Disjointness
Returns an instance of the Disjointness class.
getRelationship() - Static method in class uk.ac.ic.doc.automed.matching.relationships.Equivalence
Returns an instance of the Equivalence class.
getRelationship() - Static method in class uk.ac.ic.doc.automed.matching.relationships.Incompatibility
Returns an instance of the Incompatibility class.
getRelationship() - Static method in class uk.ac.ic.doc.automed.matching.relationships.Overlapness
Returns an instance of the Overlapness class.
getRelationship() - Static method in class uk.ac.ic.doc.automed.matching.relationships.Subset
Returns an instance of the Subset class.
getRelationship() - Static method in class uk.ac.ic.doc.automed.matching.relationships.Superset
Returns an instance of the Superset class.
getRelationship() - Method in class uk.ac.ic.doc.automed.matching.SchemaElementPairRelationship
Returns the semantic relationship between the first and the second element in the pair.
getRelationships(BidirectionalMap) - Method in class uk.ac.ic.doc.automed.matching.DegreeCombinator
Returns the semantic relationships of the schema elements based on the areas of the BidirectionalMap.
getRelationships() - Method in class uk.ac.ic.doc.automed.matching.RelationshipExtractor
 
getRelationships(ArrayList) - Static method in class uk.ac.ic.doc.automed.matching.RelationshipExtractor
Returns the relationships for each pair of elements in the specified list.
getRelationships() - Method in class uk.ac.ic.doc.automed.matching.SQLRelationshipExtractor
Returns the semantic relationships for the schema objects in the schemas
getRelationshipsColumnEdges(double, double, double, double) - Method in class uk.ac.ic.doc.automed.editor.MatchingTool
 
getRelationshipsColumns(double, double, double, double) - Method in class uk.ac.ic.doc.automed.editor.MatchingTool
 
getRelationshipsTables(double, double, double, double) - Method in class uk.ac.ic.doc.automed.editor.MatchingTool
 
getRelativeDegrees(ArrayList, ArrayList) - Static method in class uk.ac.ic.doc.automed.matching.modules.bidirectionalmap.ClustererClassifier
 
getRemainderQuery() - Method in class uk.ac.ic.doc.rodex.qproc.QueryRewriterResult
 
getRemoteAddress() - Method in class uk.ac.ic.doc.automed.p2p.communication.ResponseHandler
The address of the remote host to which this response is sent
getRemotePort() - Method in class uk.ac.ic.doc.automed.p2p.communication.ResponseHandler
The port on the remote host at which this response is targeted
getRemoteStatus() - Method in class uk.ac.ic.doc.automed.p2p.KeepAliveMessageHandler
 
getReply(AbstractMessage, String, String, String) - Method in class uk.ac.ic.doc.automed.p2p.MessageHandler
Get reply for each send message of a broker query
getReplyForRequest(AbstractMessage, String, int) - Method in class uk.ac.ic.doc.automed.p2p.AutoMedPeer
 
getRepObject() - Method in interface uk.ac.ic.doc.automed.editor.Positionable
 
getRepObject() - Method in class uk.ac.ic.doc.automed.reps.Construct
 
getRepObject() - Method in class uk.ac.ic.doc.automed.reps.Model
 
getRepObject() - Method in class uk.ac.ic.doc.automed.reps.Network
 
getRepObject() - Method in class uk.ac.ic.doc.automed.reps.Schema
 
getRepObject() - Method in class uk.ac.ic.doc.automed.reps.SchemaObject
 
getRepository() - Static method in class uk.ac.ic.doc.automed.p2p.directory.P2PDirectoryRepository
static { //LOAD DRIVER CLASSES try { Class.forName(driver); } catch(Exception e) { e.printStackTrace(); } } private Connection connection; private Statement statement; private ResultSet resultSet; private ResultSetMetaData metaData; private DatabaseMetaData dbMetaData; -- dmle 9/2/2006
getRepositoryFriendlyQuery(Schema, QueryAnalyser) - Static method in class uk.ac.ic.doc.rodex.qproc.QueryRewriteProcessor
A common method for building the repository-oriented representation of an IQL query
One requirement for this is that the rewritting query must contain schema name for each scheme (subgoal) that it contains.
getRepTran() - Method in class uk.ac.ic.doc.automed.tml.TML
 
getRequestId() - Method in class uk.ac.ic.doc.automed.p2p.messages.abstractlayer.AbstractMessage
 
getRequestMessage() - Method in class uk.ac.ic.doc.automed.p2p.communication.AbstractRequestListener
 
getRequestMessage() - Method in interface uk.ac.ic.doc.automed.p2p.communication.RequestListener
The message to send across
getRequestMessage() - Method in class uk.ac.ic.doc.automed.p2p.KeepAliveMessageHandler
Return an AbstractMessage object representing the message to send
getRequestMessage() - Method in class uk.ac.ic.doc.automed.p2p.UnregisterPeerMessageHandler
Return an AbstractMessage object representing the message to send
getRequestMessage() - Method in class uk.ac.ic.doc.automed.p2p.UpdateDataMessageHandler
Return an AbstractMessage object representing the message to send
getRequired() - Method in class uk.ac.ic.doc.automed.wrappers.xsdomobject.Attribute
Return the value of the required flag
getResponseData() - Method in class uk.ac.ic.doc.automed.p2p.communication.AbstractRequestListener
Method to retrieve response data
getResponseData() - Method in interface uk.ac.ic.doc.automed.p2p.communication.RequestListener
Method to retrieve response data
getResponseData() - Method in class uk.ac.ic.doc.automed.p2p.SimpleMessageHandler
 
getResult() - Method in class uk.ac.bbk.dcs.automed.dataWarehousing.dlt.TransfStep
 
getResult() - Method in class uk.ac.ic.doc.automed.p2p.messages.applicationlayer.TellBrokerQuery
 
getResult() - Method in class uk.ac.ic.doc.automed.p2p.QueryResultDescription
 
getResultASG() - Method in class uk.ac.ic.doc.rodex.qproc.QueryRewriteProcessor
Return the ASG representation of the cached views
getResultFromRepository() - Method in class uk.ac.ic.doc.automed.p2p.BrokerRequestReceiver
 
getResultObjects() - Method in class uk.ac.ic.doc.rodex.qproc.QueryRewriterResult
A List of ASG result objects
getResultString() - Method in class uk.ac.ic.doc.rodex.qproc.QueryRewriteProcessor
Return the String representation of the cached views
getResultString() - Method in class uk.ac.ic.doc.rodex.qproc.QueryRewriterResult
IQL tuple result (as string)
getResultTTL() - Method in class uk.ac.ic.doc.rodex.qproc.QualityIndicator
 
getReverseTransformation() - Method in class uk.ac.ic.doc.automed.reps.Transformation
Returns the reverse transformation of the given transformation.
getRole() - Method in class uk.ac.ic.doc.automed.p2p.AutoMedPeer
Return this peer's role
getRoot() - Method in class uk.ac.ic.doc.automed.p2p.PathwayDescription
Backward compatible method: return the first element by default
getRoot() - Method in class uk.ac.ic.doc.automed.wrappers.xsdomobject.Document
Return the root element of this document
getRoots() - Method in class uk.ac.ic.doc.automed.p2p.PathwayDescription
Get all roots
getRoots() - Method in class uk.ac.ic.doc.automed.reps.Network
 
getRootType(String) - Method in class uk.ac.ic.doc.automed.wrappers.xsdomobject.Document
Return a named root type, null if the named type is not a root ct
getRootTypes() - Method in class uk.ac.ic.doc.automed.wrappers.xsdomobject.Document
Return any root types
getRoutingTableString() - Method in class uk.ac.ic.doc.rodex.p2p.Peer
 
getRowCount() - Method in class uk.ac.ic.doc.automed.p2p.gui.PeerTableModel
 
getRowData() - Method in class uk.ac.ic.doc.automed.util.cache.CacheContentDescription
Return row data
getSchema() - Method in class uk.ac.ic.doc.automed.editor.XMLSchemaEditor
Get the value of the Automed schema for this object
getSchema(SchemaDescription) - Method in class uk.ac.ic.doc.automed.p2p.gui.PeerApplication
Edited by MDLE on 19/10/2005 to also query associated models if required
getSchema() - Method in class uk.ac.ic.doc.automed.p2p.messages.applicationlayer.BrokerAllQuery
 
getSchema(String) - Method in class uk.ac.ic.doc.automed.p2p.SchemaGetter
Edited by MDLE on 19/10/2005 to adapt to a new method signature in getting the schema's root object
This method creates a new Schema together with its associated objects
getSchema(Schema) - Method in class uk.ac.ic.doc.automed.p2p.SchemaGetter
An overloading method for creating a new Schema object
This method differs from the overloaded one SchemaGetter.getSchema(String schema)
in that it takes a pre-created Schema object and use it to create
the associated objects.
getSchema() - Method in class uk.ac.ic.doc.automed.reps.AccessMethod
Returns the schema that represents the database to which the access method connects.
getSchema() - Method in exception uk.ac.ic.doc.automed.reps.BadSchemaException
Returns the bad schema.
getSchema() - Method in class uk.ac.ic.doc.automed.reps.Node
Returns the schema at this node in the network
getSchema(String) - Static method in class uk.ac.ic.doc.automed.reps.Schema
Returns the Schema object with the given name.
getSchema(int) - Static method in class uk.ac.ic.doc.automed.reps.Schema
Returns the Schema object which has the given schema identifier (SID).
getSchema() - Method in class uk.ac.ic.doc.automed.reps.SchemaObject
Returns the Schema to which the SchemaObject belongs.
getSchema() - Method in class uk.ac.ic.doc.automed.ssd.SSDFormat
 
getSchema() - Method in class uk.ac.ic.doc.automed.wrappers.AutoMedWrapper
Returns the Schema that represents in the datasource in terms of SchemaObjects in a data source oriented manner.
getSchema(String) - Method in class uk.ac.ic.doc.automed.wrappers.AutoMedWrapper
A method that creates in the repository a Schema and AccessMethod from the supplied information, together with a Protocol if necessary, and returns the AccessMethod.
getSchema() - Method in class uk.ac.ic.doc.automed.xmlschema.tree.TreeDropTarget
Get the current schema
getSchemaBackgroundColor(int) - Static method in class uk.ac.ic.doc.automed.STR
 
getSchemaByName(String) - Static method in class uk.ac.ic.doc.automed.STR
Returns the schema identifier (SID) of the schema specified by name.
Assumption:schema names are unique.
getSchemaDescription() - Method in class uk.ac.ic.doc.automed.p2p.directory.SchemaEvent
 
getSchemaDoc() - Method in class uk.ac.bbk.dcs.automed.xml.wrappers.XMLDSSDOMFromXSD
 
getSchemaDoc() - Method in class uk.ac.bbk.dcs.automed.xml.wrappers.XMLWrapper
 
getSchemaElements(Schema, int, boolean) - Static method in class uk.ac.ic.doc.automed.matching.SchemaElement
Returns an array of schema elements that belong to the schema.
getSchemaElements(Schema, SchemaObject[], int, boolean) - Static method in class uk.ac.ic.doc.automed.matching.SchemaElement
Returns an array of schema elements based on the schema objects' array.
getSchemaEvolutionType() - Method in class uk.ac.bbk.dcs.automed.evolution.schemaModelEvolution.SMEvolution
 
getSchemaEvolutionType() - Method in class uk.ac.bbk.dcs.automed.evolution2.schemaEvolution.SchemaEvolution
 
getSchemaForegroundColor(int) - Static method in class uk.ac.ic.doc.automed.STR
 
getSchemaIDs() - Static method in class uk.ac.ic.doc.automed.reps.Schema
Returns an array of SID of all the schemas found in the STR.
getSchemaIDs() - Static method in class uk.ac.ic.doc.automed.STR
Returns the IDs of all the schemas found in the STR.
getSchemaLabelPos(int) - Static method in class uk.ac.ic.doc.automed.STR
 
getSchemaLocation() - Method in class uk.ac.ic.doc.automed.xmlschema.output.XMLSchemaOutputter
Return the Schema Location
getSchemaMap() - Method in class uk.ac.ic.doc.automed.p2p.tree.ObjectBuilder
 
getSchemaName() - Method in class uk.ac.bbk.dcs.automed.qproc.iql.SchemeInfo
 
getSchemaName() - Method in class uk.ac.bbk.dcs.automed.xml.wrappers.XMLWrapper
 
getSchemaName() - Method in class uk.ac.ic.doc.automed.p2p.directory.SchemaEvent
 
getSchemaName(int) - Static method in class uk.ac.ic.doc.automed.STR
Returns the name of the schema with the given schema identifier.
getSchemaName() - Method in class uk.ac.ic.doc.rodex.qproc.QueryAnalyser
Return the schema name of the query
getSchemaName() - Method in class uk.ac.ic.doc.rodex.qproc.QueryDescription
 
getSchemaName() - Method in class uk.ac.ic.doc.rodex.qproc.QuerySubGoal
Return the schema name (e.g.
getSchemaNames() - Static method in class uk.ac.ic.doc.automed.reps.Schema
Returns an array of names of all the schemas found in the STR.
getSchemaNames() - Static method in class uk.ac.ic.doc.automed.STR
Returns the name of all the schemas found in the STR.
getSchemaNetworkHelp - Static variable in class uk.ac.ic.doc.automed.editor.Editor
 
getSchemaNetworkSyntax - Static variable in class uk.ac.ic.doc.automed.editor.Editor
 
getSchemaObject() - Method in class uk.ac.ic.doc.automed.matching.SchemaElement
Returns the SchemaObject wrapped by this SchemaElement object.
getSchemaObject(String) - Method in class uk.ac.ic.doc.automed.reps.Schema
 
getSchemaObject(String, int) - Method in class uk.ac.ic.doc.automed.reps.Schema
Return the SchemaObject that has the supplied name in this schema.
getSchemaObject(int) - Static method in class uk.ac.ic.doc.automed.reps.SchemaObject
Returns the SchemaObject reference that has the given schema object identifier (OBID).
getSchemaObject() - Method in class uk.ac.ic.doc.automed.reps.Scheme
Returns the SchemaObject that this Scheme element is contained within, i.e.
getSchemaObject(Schema) - Method in class uk.ac.ic.doc.automed.reps.Transformation
Returns the SchemaObject of the transformation.
getSchemaObject() - Method in class uk.ac.ic.doc.automed.wrappers.xsdomobject.XSDOMObject
Get the schema object for this object
getSchemaObjectBackgroundColor(int) - Static method in class uk.ac.ic.doc.automed.STR
 
getSchemaObjectByName(String) - Method in class uk.ac.ic.doc.automed.reps.Schema
Deprecated. Return the SchemaObject that has the supplied name in this schema. Note that the String supplied must match exactly the name of the SchemaObject as returned by SchemaObject.getSchemeNamesString()
getSchemaObjectByOBID(int) - Static method in class uk.ac.ic.doc.automed.reps.SchemaObject
Deprecated. use SchemaObject.getSchemaObject(int) instead
getSchemaObjectCID(int) - Static method in class uk.ac.ic.doc.automed.STR
Returns the construct identifier (CID) of the schema object.
getSchemaObjectForegroundColor(int) - Static method in class uk.ac.ic.doc.automed.STR
 
getSchemaObjectID() - Method in class uk.ac.bbk.dcs.automed.qproc.iql.SchemeInfo
 
getSchemaObjectLabelPos(int) - Static method in class uk.ac.ic.doc.automed.STR
 
getSchemaObjectPos(int) - Static method in class uk.ac.ic.doc.automed.STR
 
getSchemaObjects() - Method in class uk.ac.ic.doc.automed.reps.Construct
Find all SchemaObjects that are instances of a particular Construct.
getSchemaObjects() - Method in class uk.ac.ic.doc.automed.reps.Schema
Returns an array of schema objects (of class SchemaObject) that belong to the schema.
getSchemaObjects(int) - Static method in class uk.ac.ic.doc.automed.STR
Returns the object identifiers (OBID) in ascending order of all the schema objects that belong to a particular schema.
getSchemaObjectsByCID(int) - Static method in class uk.ac.ic.doc.automed.STR
Returns the object identifiers (OBID) in ascending order of all the schema objects that are instances of a certain construct type, in order of the OBID to which they belong
getSchemaObjectSID(int) - Static method in class uk.ac.ic.doc.automed.STR
Returns the schema identifier (SID) that a schema object belongs to.
getSchemaObjectsToLayout() - Method in class uk.ac.ic.doc.automed.editor.autolayout.AutoLayoutSchemaObject
Same as calling getSchemaObjectsToLayout(null)
getSchemaObjectsToLayout(AutoLayoutSchemaObject) - Method in class uk.ac.ic.doc.automed.editor.autolayout.AutoLayoutSchemaObject
Get array of objects to layout connected to this object.
getSchemaObjectsToLayout() - Method in class uk.ac.ic.doc.automed.editor.autolayout.AutoLayoutSpringObject
 
getSchemaObjectTextColor(int) - Static method in class uk.ac.ic.doc.automed.STR
 
getSchemaObjectTID(int) - Static method in class uk.ac.ic.doc.automed.STR
Returns the type identifier (TID) for a schema object.
getSchemaObjectType() - Method in class uk.ac.ic.doc.automed.reps.SchemaObject
Return the type id of this schema object - Note link objects will not have a type
getSchemaObjectTypeName() - Method in class uk.ac.ic.doc.automed.reps.SchemaObject
Return the type name of this schema object - Note link objects will not have a type
getSchemaObjectValue(int) - Static method in class uk.ac.ic.doc.automed.STR
Returns the name (value) of the schema object.
getSchemaPos(int) - Static method in class uk.ac.ic.doc.automed.STR
 
getSchemaRequest(String, String, String) - Static method in class uk.ac.ic.doc.automed.p2p.util.Util
 
getSchemas() - Method in class uk.ac.ic.doc.automed.matching.Integrator
 
getSchemas() - Method in class uk.ac.ic.doc.automed.matching.SQLIntegrator
Returns an array of the current schemas.
getSchemas() - Method in class uk.ac.ic.doc.automed.reps.Network
Return all the Schemas in this network.
getSchemas() - Method in class uk.ac.ic.doc.automed.reps.Pathway
Return as an array the Schemas that appear in the Transformations of this Pathway.
getSchemas() - Static method in class uk.ac.ic.doc.automed.reps.Schema
Find all Schema instances held in the repository.
getSchemas() - Method in class uk.ac.ic.doc.automed.reps.Transformation
Returns the schemas of the transformation.
getSchemaSIDs() - Static method in class uk.ac.ic.doc.automed.STR
Returns the schema identifier (SID) of all the schemas found in the STR.
getSchemasImplementedBy(String) - Method in class uk.ac.ic.doc.automed.p2p.directory.P2PDirectory
 
getSchemasImplementedBy(String) - Method in class uk.ac.ic.doc.automed.p2p.directory.P2PDirectoryRepository
 
getSchemasImplementedBy(String) - Method in class uk.ac.ic.doc.automed.p2p.MessageHandler
 
getSchemaSubnetSID(int) - Static method in class uk.ac.ic.doc.automed.STR
Returns the subnet schema id of this schema.
getSchemaTextColor(int) - Static method in class uk.ac.ic.doc.automed.STR
 
getSchemaType(int) - Static method in class uk.ac.ic.doc.automed.STR
Returns the type of a schema.
getSchemaUIDDoc() - Method in class uk.ac.bbk.dcs.automed.xml.wrappers.XMLDSSDOMFromXSD
 
getSchemaUIDDoc() - Method in class uk.ac.bbk.dcs.automed.xml.wrappers.XMLWrapper
 
getScheme() - Method in class uk.ac.bbk.dcs.automed.qproc.iql.SchemeInfo
Deprecated. use SchemeInfo.getSchemeNamesString(boolean) instead
getScheme() - Method in class uk.ac.ic.doc.automed.reps.Construct
Returns an array of ConstructScheme objects representing the scheme of the construct.
getSchemeDefinition() - Method in class uk.ac.ic.doc.automed.reps.SchemaObject
All SchemaObjects when they are created by methods such as Schema.createSchemaObject, Schema.applyAddTransformation and Transformation.createAddTransformation require that an Object array be supplied that defines the scheme of the new SchemaObject.
getSchemeItems() - Method in class uk.ac.bbk.dcs.automed.qproc.iql.SchemeInfo
 
getSchemeName() - Method in class uk.ac.ic.doc.rodex.qproc.QuerySubGoal
Return the scheme name (e.g.
getSchemeNames() - Method in class uk.ac.ic.doc.automed.reps.SchemaObject
A shorthand for #getSchemeNames(false)
getSchemeNames(boolean) - Method in class uk.ac.ic.doc.automed.reps.SchemaObject
Return the names of all objects in the scheme of this SchemaObject.
getSchemeNames(int, int) - Method in class uk.ac.ic.doc.automed.reps.SchemaObject
 
getSchemeNames(int, int, boolean) - Method in class uk.ac.ic.doc.automed.reps.SchemaObject
 
getSchemeNamesString(boolean) - Method in class uk.ac.bbk.dcs.automed.qproc.iql.SchemeInfo
 
getSchemeNamesString() - Method in class uk.ac.ic.doc.automed.reps.SchemaObject
Same as calling #Schema.getSchemaNameString(false)
getSchemeNamesString(boolean) - Method in class uk.ac.ic.doc.automed.reps.SchemaObject
Returns the scheme representation this SchemaObject using brackets as set by Schema.setOpenCloseSchemeBracket.
getSchemeNamesString(int, int) - Method in class uk.ac.ic.doc.automed.reps.SchemaObject
 
getSchemeNamesString(int, int, boolean) - Method in class uk.ac.ic.doc.automed.reps.SchemaObject
 
getSchemeNamesString(Object[]) - Static method in class uk.ac.ic.doc.automed.reps.SchemaObject
Return the scheme string that would return from creating a SchemaObject using the supplied array of Objects.
getSchemeNamesStringWithOBID() - Method in class uk.ac.bbk.dcs.automed.qproc.iql.SchemeInfo
WARNING: returns the String representation of a SchemeInfo object with a ':'<OBID> suffix - this does NOT adhere to the scheme syntax.
getSchemeOBIDList(int) - Static method in class uk.ac.ic.doc.automed.STR
Returns a list of all schema object identifiers (OBID) by which a particular schema object is referenced.
getSchemeObjects() - Method in class uk.ac.ic.doc.automed.reps.SchemaObject
Returns an array of schema objects that are contained in the scheme of this schema object.
getSchemePos() - Method in class uk.ac.ic.doc.automed.reps.ConstructScheme
 
getSchemePos() - Method in class uk.ac.ic.doc.automed.reps.Scheme
Returns the position of this Scheme in the definition of the SchemaObject it defines.
getSchemePosList(int) - Static method in class uk.ac.ic.doc.automed.STR
Returns a list of positions in the scheme of a particular schema object.
getSchemes(Cell, LinkedList) - Method in class uk.ac.bbk.dcs.automed.qproc.iql.ASGComprehension
 
getSchemes() - Method in class uk.ac.bbk.dcs.automed.qproc.iql.ASGComprehension
 
getSchemes(Cell, LinkedList) - Method in class uk.ac.bbk.dcs.automed.qproc.iql.ASGComprehensionMiniCon
 
getSchemes(Cell, Collection) - Static method in class uk.ac.bbk.dcs.automed.qproc.iql.IQLUtility
 
getSchemes(List, Cell) - Method in class uk.ac.ic.doc.rodex.qproc.ASGExplore
A recursive method to get a list of schemes from an ASG query
dmle 22/11/2005
getSchemeSOBID(int, int) - Static method in class uk.ac.ic.doc.automed.STR
Returns the object identifier (SOBID) of the referenced schema object in the specified schema object's scheme at the given position.
getSchemeSOBIDList(int) - Static method in class uk.ac.ic.doc.automed.STR
Returns a list of all schema object identifiers (SOBID) referenced by a particular schema object.
getSchemeString() - Method in class uk.ac.ic.doc.automed.reps.SchemaObject
 
getSchemeString(Schema) - Method in class uk.ac.ic.doc.automed.reps.SchemaObject
 
getSchemeType() - Method in class uk.ac.ic.doc.automed.reps.ConstructScheme
Returns the scheme type of the ConstructScheme.
getSchemeTypeString(int) - Static method in class uk.ac.ic.doc.automed.reps.ConstructScheme
 
getSchemeTypeString(int, boolean) - Static method in class uk.ac.ic.doc.automed.reps.ConstructScheme
 
getScrollPane(JTextArea) - Static method in class uk.ac.ic.doc.automed.editor.TextEditor
Initialises the scroll pane for the text area
getSecondElement() - Method in class uk.ac.ic.doc.automed.matching.SchemaElementPair
Returns the second SchemaElement object of the pair.
getSeconds() - Method in class uk.ac.bbk.dcs.automed.qproc.iql.Cell
 
getSectionDebugLevel(int) - Static method in class uk.ac.ic.doc.automed.STR
Gets the debug level which the section of code has been set to.
getSectionDebugLevel(int) - Static method in class uk.ac.ic.doc.automed.util.Debugger
Gets the debug level which the section of code has been set to.
getSelectedValue(JTable) - Method in class uk.ac.ic.doc.automed.editor.TextEditor
Get the selected cell value
getSelectedValue() - Method in class uk.ac.ic.doc.automed.p2p.gui.PeerTable
 
getSelector() - Method in class uk.ac.ic.doc.automed.xmlschema.output.XPathSelector
Return XPath selector
getSelfIDAddressPair() - Method in class uk.ac.ic.doc.rodex.p2p.Peer
 
getSemanticRelationship(int) - Static method in class uk.ac.ic.doc.automed.matching.relationships.SemanticRelationship
 
getSender() - Method in class uk.ac.ic.doc.automed.p2p.messages.abstractlayer.AbstractMessage
 
getSeparateErrors() - Method in class uk.ac.ic.doc.automed.xml.XMLReader
by default, errors are reported through the token stream, for parsing this may not be convenient you can have errors reported through getErrors() instead by setting separateErrors to true
getSerialEntryBinding(Class) - Method in class uk.ac.ic.doc.automed.util.persist.PersistentDBController
Return serial-type entry binding
getServerAddress() - Static method in class uk.ac.ic.doc.automed.p2p.AppToolKit
 
getServerAddress(String) - Static method in class uk.ac.ic.doc.automed.p2p.AppToolKit
 
getServerAddress() - Method in class uk.ac.ic.doc.automed.p2p.AppToolKit.NodeConfig
 
getServerAddress(String) - Method in class uk.ac.ic.doc.automed.p2p.AppToolKit.NodeConfig
 
getServerInstance(RequestListener, int, String, Properties) - Static method in class uk.ac.ic.doc.automed.p2p.communication.ServerFactory
Create a new instance of communication server for a specific protocol
getServerPort() - Static method in class uk.ac.ic.doc.automed.p2p.AppToolKit
 
getServerPort(String) - Static method in class uk.ac.ic.doc.automed.p2p.AppToolKit
 
getServerPort() - Method in class uk.ac.ic.doc.automed.p2p.AppToolKit.NodeConfig
 
getServerPort(String) - Method in class uk.ac.ic.doc.automed.p2p.AppToolKit.NodeConfig
 
getServerPort() - Method in class uk.ac.ic.doc.automed.p2p.communication.AbstractServer
 
getSFID(String) - Static method in class uk.ac.ic.doc.automed.ssd.SSDFormat
 
getSFID() - Method in class uk.ac.ic.doc.automed.ssd.SSDFormat
 
getSFIDByName(String) - Static method in class uk.ac.ic.doc.automed.SSMDR
Returns the ssd format identifier (SFID) of the ssd format specified by name.
Assumption:ssd format names are unique.
getSFIDBySID(int) - Static method in class uk.ac.ic.doc.automed.SSMDR
Returns the ssdformat identifier (SFID) of the ssd format specified by schema identifier (SID).
getSharedVariables(QuerySubGoal) - Method in class uk.ac.ic.doc.rodex.qproc.MiniConQueryRewriter
Get all shared variables between a query and one of its sub-goal
getSharedVariables() - Method in class uk.ac.ic.doc.rodex.qproc.QuerySubGoal
Return a List of shared variables
getSID() - Method in class uk.ac.ic.doc.automed.reps.Schema
Returns the schema identifier (SID) of the schema.
getSIDBySFID(int) - Static method in class uk.ac.ic.doc.automed.SSMDR
Returns the schema identifier (SID) of the ssd format specified by ssd format identifier (SFID).
getSimilarityDegree() - Method in class uk.ac.ic.doc.automed.matching.modules.bidirectionalmap.SimilarCluster
 
getSimpleTransfSteps(String, String) - Method in class uk.ac.bbk.dcs.automed.dataWarehousing.dlt.TransfStep
 
getSimpleTransfSteps(Schema, Schema) - Method in class uk.ac.bbk.dcs.automed.dataWarehousing.dlt.TransfStep
 
getSimpleValueMap() - Method in class uk.ac.ic.doc.automed.p2p.tree.AutoMedObject
return a simple HashMap of field-> value as String.
getSize() - Method in class uk.ac.ic.doc.automed.matching.modules.ElementVectorRepresentation
 
getSmartQuoting() - Static method in class uk.ac.ic.doc.automed.reps.Syntax
 
getSOCount(Model, Schema) - Static method in class uk.ac.bbk.dcs.automed.xml.experiments.ExperimentsUtility
 
getSODefinition(QuerySubGoal) - Method in class uk.ac.bbk.dcs.automed.hdmstore.HdmWrapper
Implement AutoMedWrapper abstract method
getSODefinition(QuerySubGoal) - Method in class uk.ac.bbk.dcs.automed.xml.wrappers.XMLWrapper
 
getSODefinition(QuerySubGoal, String, String) - Method in class uk.ac.ic.doc.automed.p2p.QueryGetter
Ask a remote peer for the query definitions of a given schema object
getSODefinition(QuerySubGoal, String, String) - Method in interface uk.ac.ic.doc.automed.qproc.IQueryAggregator
Ask a remote peer for the query definitions of a given schema object
getSODefinition(String) - Method in class uk.ac.ic.doc.automed.wrappers.AutoMedWrapper
Calculate the quality of a schema object.
getSODefinition(QuerySubGoal) - Method in class uk.ac.ic.doc.automed.wrappers.AutoMedWrapper
An abstract method used by #getSOQuality(String schemeDef).
getSODefinition(QuerySubGoal) - Method in class uk.ac.ic.doc.automed.wrappers.CSVWrapper
Implement AutoMedWrapper abstract method This method should never be executed because the calling method should already know that the transformation leading to the schema object represented by qsg variable belongs to a source schema.
getSODefinition(QuerySubGoal) - Method in class uk.ac.ic.doc.automed.wrappers.HDMWrapper
Implement AutoMedWrapper abstract method
getSODefinition(QuerySubGoal) - Method in class uk.ac.ic.doc.automed.wrappers.P2PWrapper
Implement AutoMedWrapper abstract method
getSODefinition(QuerySubGoal) - Method in class uk.ac.ic.doc.automed.wrappers.QueryCacheWrapper
This method is empty
getSODefinition(QuerySubGoal) - Method in class uk.ac.ic.doc.automed.wrappers.SQLWrapper
Implement AutoMedWrapper abstract method This method should never be executed because the calling method should already know that the transformation leading to the schema object represented by qsg variable belongs to a source schema.
getSODefinition(QuerySubGoal) - Method in class uk.ac.ic.doc.automed.wrappers.UMLWrapper
Implement AutoMedWrapper abstract method This method should never be executed because the calling method should already know that the transformation leading to the schema object represented by qsg variable belongs to a source schema.
getSODefinition(QuerySubGoal) - Method in class uk.ac.ic.doc.automed.wrappers.XMLSchemaWrapper
Implement AutoMedWrapper abstract method This method should never be executed because the calling method should already know that the transformation leading to the schema object represented by qsg variable belongs to a source schema.
getSODefinition(QuerySubGoal) - Method in class uk.ac.ic.doc.automed.wrappers.YattaWrapper
Implement AutoMedWrapper abstract method
getSODefinition(QuerySubGoal, String, String) - Method in class uk.ac.ic.doc.rodex.p2p.AdvancedQueryGetter
Ask a remote peer for the query definitions of a given schema object
getSODefinition(QuerySubGoal) - Method in class uk.ac.ic.doc.rodex.qproc.QueryMediator
Get query definitions for a schema object.
getSourceAddress() - Method in class uk.ac.ic.doc.automed.p2p.communication.ResponseHandler
The address of this host used for sending response
getSourcePath(PeerDescription) - Method in class uk.ac.ic.doc.automed.p2p.gui.PeerApplication
Get the pathway from a peer between a public schema and any named schema at that peer.
getSourcePath() - Method in class uk.ac.ic.doc.automed.p2p.gui.SchemaInfoFrame
 
getSources() - Method in class uk.ac.bbk.dcs.automed.dataWarehousing.dlt.TransfStep
 
getSourceSchema() - Method in class uk.ac.bbk.dcs.automed.qproc.reformulate.CompositeViewMap
 
getSourceSchemaSID() - Method in class uk.ac.bbk.dcs.automed.qproc.evaluate.Evaluator
 
getSourcesOfIQL(Cell) - Method in class uk.ac.bbk.dcs.automed.dataWarehousing.util.GetIQLSource
 
getSourcesOfIQL(String) - Method in class uk.ac.bbk.dcs.automed.dataWarehousing.util.GetIQLSource
 
getSourceType(String, String) - Static method in class uk.ac.bbk.dcs.automed.dataWarehousing.util.Tools4DW
 
getSpans(int, int) - Method in class uk.ac.bbk.dcs.automed.hdmstore.HdmStore
For the edge specified return a LinkedList with each element of type Span representing a span in that edge.
getSpecialConstructs(SchemaObject) - Static method in class uk.ac.ic.doc.automed.reps.Utility
Returns an array of SchemaObject objects corresponing to the sub-entities of a generalization.
getSPID() - Method in class uk.ac.ic.doc.automed.ssd.SSDPattern
 
getSPID(int) - Method in class uk.ac.ic.doc.automed.ssd.SSDPattern
 
getSPIDByOBID(int) - Method in class uk.ac.ic.doc.automed.ssd.SSDFormat
 
getSPIDByPID(int) - Static method in class uk.ac.ic.doc.automed.SSMDR
Returns the recent ssdpattern identifier (SPID) of the specified pattern.
getSPIDBySFIDOBID(int, int) - Static method in class uk.ac.ic.doc.automed.SSMDR
Returns the ID of ssdpattern in the SSMDR for the particular ssdformat and schemaobject.
getSPIDsBySFID(int) - Static method in class uk.ac.ic.doc.automed.SSMDR
Returns the IDs of all the ssdpatterns found in the SSMDR.
getSQLQuery(int) - Method in class uk.ac.ic.doc.automed.wrappers.SQLQuery
Return the SQLQuery held in a certain field, or null if the field is empty.
getSQLTableReference(Object[]) - Method in class uk.ac.ic.doc.automed.wrappers.SQLWrapperFactory
Given the scheme of a table, get the name SQL uses to reference that table.
getSQLType(String) - Static method in class uk.ac.ic.doc.automed.Util
 
getSQLTypeName(int) - Static method in class uk.ac.ic.doc.automed.Util
 
getSSDFormat(String) - Static method in class uk.ac.ic.doc.automed.ssd.SSDFormat
 
getSSDFormat(int) - Static method in class uk.ac.ic.doc.automed.ssd.SSDFormat
 
getSSDFormat() - Method in class uk.ac.ic.doc.automed.wrappers.YattaWrapper
 
getSSDFormatBySchema(Schema) - Static method in class uk.ac.ic.doc.automed.ssd.SSDFormat
 
getSSDFormatIDs() - Static method in class uk.ac.ic.doc.automed.SSMDR
Returns the IDs of all the ssd formats found in the SSMDR.
getSSDFormatName(int) - Static method in class uk.ac.ic.doc.automed.ssd.SSDFormat
 
getSSDFormatName(int) - Static method in class uk.ac.ic.doc.automed.SSMDR
Returns the name of the ssd format with the given ssd format identifier.
getSSDFormatNames() - Static method in class uk.ac.ic.doc.automed.SSMDR
Returns the name of all the ssd formats found in the SSMDR.
getSSDPatternBySPID(int) - Method in class uk.ac.ic.doc.automed.ssd.SSDFormat
 
getSSDPatternIDs() - Method in class uk.ac.ic.doc.automed.ssd.SSDFormat
 
getSSDSource() - Method in class uk.ac.ic.doc.automed.wrappers.YattaWrapper
 
getSSMDR_DataSourceName() - Static method in class uk.ac.ic.doc.automed.SSMDR
Deprecated. use getDataSourceName()
getStackSize(Throwable) - Static method in class uk.ac.ic.doc.automed.Util
Determine the size (in bytes) of an exception stack
getStandardDeviation(double[]) - Static method in class uk.ac.ic.doc.automed.matching.Util
 
getStandardDeviation(double[], double) - Static method in class uk.ac.ic.doc.automed.matching.Util
 
getStateHandler() - Method in class uk.ac.ic.doc.automed.p2p.AutoMedPeer
Return reference to state handler
getStateHandler() - Method in class uk.ac.ic.doc.automed.p2p.gui.PeerApplication
Return the peer-wise state handler object.
getStats() - Method in class uk.ac.ic.doc.automed.matching.Averages
 
getStatus() - Method in class uk.ac.ic.doc.automed.p2p.directory.PeerDescription
Getter for status and last update
getStatus() - Method in class uk.ac.ic.doc.automed.p2p.directory.SchemaDescription
Getter for status
getSTR_DataSourceName() - Static method in class uk.ac.ic.doc.automed.STR
Deprecated. use getDataSourceName()
getStrength() - Method in class uk.ac.ic.doc.automed.matching.relationships.Compatibility
 
getStrength() - Method in class uk.ac.ic.doc.automed.matching.relationships.Disjointness
 
getStrength() - Method in class uk.ac.ic.doc.automed.matching.relationships.Equivalence
 
getStrength() - Method in class uk.ac.ic.doc.automed.matching.relationships.Incompatibility
 
getStrength() - Method in class uk.ac.ic.doc.automed.matching.relationships.Overlapness
 
getStrength() - Method in class uk.ac.ic.doc.automed.matching.relationships.SemanticRelationship
Returns the strength of the SemanticRelationship object.
getStrength() - Method in class uk.ac.ic.doc.automed.matching.relationships.Subsumption
 
getString(int) - Method in class uk.ac.ic.doc.automed.wrappers.AutoMedQuery
Return a field as a String value.
getString(int) - Method in class uk.ac.ic.doc.automed.wrappers.AutoMedTuple
Return a particular attribute from a tuple (counting from one) as a String
getStringConstructProperty(int, int, String) - Static method in class uk.ac.ic.doc.automed.MDR
 
getStringHashProvider(String) - Static method in class uk.ac.ic.doc.automed.util.hashing.StringHashFactory
 
getStringValue(String) - Method in class uk.ac.ic.doc.automed.util.db.DBRecord
 
getSubGoals() - Method in class uk.ac.ic.doc.rodex.qproc.MiniConQueryRewriter.MiniConDescription
Returns only the minimum set of sub-goals found when constructing the MCD
getSubGoals() - Method in class uk.ac.ic.doc.rodex.qproc.QueryAnalyser
Return a list of QuerySubGoal objects
getSubGoals() - Method in class uk.ac.ic.doc.rodex.qproc.QueryVariable
Return a list of QuerySubGoal objects which refer to this variable
getSubGraphs() - Method in class uk.ac.bbk.dcs.automed.graph.DirectedGraph
 
getSubnetSchema() - Method in class uk.ac.ic.doc.automed.reps.Schema
Find the extensional schema in the same subnetwork as this Schema.
getSubnetSchema() - Method in class uk.ac.ic.doc.automed.reps.SchemaObject
Find the extensional schema in the same subnetwork as this SchemaObject.
getSubQual(String, String) - Static method in class uk.ac.bbk.dcs.automed.dataWarehousing.util.Tools4DW
 
getSubQueries() - Method in class uk.ac.bbk.dcs.automed.dataWarehousing.dlt.TransfStep
 
getSubSteps() - Method in class uk.ac.bbk.dcs.automed.dataWarehousing.dlt.TransfStep
 
GetSuffix(int) - Method in class uk.ac.bbk.dcs.automed.qproc.annotate.grammars.schemes.SimpleCharStream
 
GetSuffix(int) - Method in class uk.ac.bbk.dcs.automed.qproc.annotate.grammars.simpleComp.SimpleCharStream
 
GetSuffix(int) - Method in class uk.ac.bbk.dcs.automed.qproc.annotate.grammars.simpleCompAppend.SimpleCharStream
 
GetSuffix(int) - Method in class uk.ac.bbk.dcs.automed.qproc.annotate.grammars.simpleCompAppendMonus.SimpleCharStream
 
GetSuffix(int) - Method in class uk.ac.bbk.dcs.automed.qproc.translators.xquery.SimpleCharStream
 
getSupressedTokenTypes() - Method in class uk.ac.ic.doc.automed.xml.XMLReader
 
getSupressIgnorableWhitespace() - Method in class uk.ac.ic.doc.automed.xml.XMLReader
The supressIgnorableWhitespace property and supressTokenTypes list are different in knid.
getSystemConst(Set) - Static method in class uk.ac.bbk.dcs.automed.qproc.iql.CFR
 
getSystemConst(List) - Static method in class uk.ac.bbk.dcs.automed.qproc.iql.CFR
 
getTableCellEditorComponent(JTable, Object, boolean, int, int) - Method in class uk.ac.ic.doc.automed.editor.TextEditor
Implement TableCellEditor interface.
Return the actual text editor to use in the selected table cell.
getTableDetailsSchemeLength() - Method in class uk.ac.ic.doc.automed.wrappers.SQLWrapperFactory
Return the number of fields in a full source table scheme used to reprsent the table details
getTableForeignKeyPoints(SchemaObject) - Static method in class uk.ac.ic.doc.automed.reps.Utility
Returns the table that a foreign key SchemaObject points.
getTableNames() - Method in class uk.ac.ic.doc.rodex.qproc.QueryAnalyser
 
getTables(Schema) - Method in class uk.ac.ic.doc.automed.matching.SQLIntegrator
Returns an array of schema objects of tables in the specified schema.
getTableWithForeignKey(SchemaObject) - Static method in class uk.ac.ic.doc.automed.reps.Utility
Returns the table of a foreign key SchemaObject.
getTargetSchema() - Method in class uk.ac.bbk.dcs.automed.qproc.reformulate.CompositeViewMap
 
getTempPathway(Pathway) - Static method in class uk.ac.ic.doc.automed.tml.TempPathway
 
getTextArea(String, boolean, boolean, int, int) - Static method in class uk.ac.ic.doc.automed.editor.TextEditor
Initialises the text area to use
getTextChildCount(Node) - Static method in class uk.ac.bbk.dcs.automed.xml.utilities.XMLUtilities
Counts the number of text chidren of the input node.
getTextChildren() - Method in class uk.ac.bbk.dcs.automed.xml.xmldssGraph.XMLDSSGraphElement
 
getTextColor() - Method in interface uk.ac.ic.doc.automed.editor.Positionable
 
getTextColor() - Method in class uk.ac.ic.doc.automed.reps.Construct
Return the default text colour to be used from drawing SchemaObjects of this Construct.
getTextColor() - Method in class uk.ac.ic.doc.automed.reps.Model
Return the default text colour to be used from drawing SchemaObjects of this Model.
getTextColor() - Method in class uk.ac.ic.doc.automed.reps.Network
 
getTextColor() - Method in class uk.ac.ic.doc.automed.reps.Schema
 
getTextColor() - Method in class uk.ac.ic.doc.automed.reps.SchemaObject
 
getTextExtent(String) - Method in class uk.ac.bbk.dcs.automed.xml.materialisation.Materialiser
 
getTextExtent(String, String) - Method in class uk.ac.bbk.dcs.automed.xml.materialisation.Materialiser
 
getTextExtent(String) - Method in class uk.ac.bbk.dcs.automed.xml.materialisation.XMLDSSMaterialiser
 
getTextExtent(String, String) - Method in class uk.ac.bbk.dcs.automed.xml.materialisation.XMLDSSMaterialiser
 
getTextNodeOrder(Node) - Static method in class uk.ac.bbk.dcs.automed.xml.utilities.XMLUtilities
 
getTextNodes(Element) - Static method in class uk.ac.bbk.dcs.automed.xml.utilities.XMLUtilities
 
getThe1stComp(String) - Static method in class uk.ac.bbk.dcs.automed.dataWarehousing.util.Tools4DW
 
getThe1stComp(Cell) - Static method in class uk.ac.bbk.dcs.automed.dataWarehousing.util.Tools4DW
 
getThreadObject() - Method in class uk.ac.ic.doc.automed.util.thread.TimedThread
Return the threadable object
getThrowErrors() - Method in class uk.ac.ic.doc.automed.xml.XMLReader
all errors are reported through the token stream or through the error stream, by setting throwErrors you can have nextToken and peekToken throw an exception if the next token is an error.
getTime() - Method in class uk.ac.bbk.dcs.automed.qproc.iql.Cell
 
getTimeOut() - Method in class uk.ac.ic.doc.automed.p2p.communication.AbstractDaemon
 
getTimeOut() - Method in class uk.ac.ic.doc.automed.p2p.P2PRegistry
 
getTimeStamp() - Method in class uk.ac.ic.doc.automed.util.cache.CacheItem
Get time stamp
getTitleFor(MainFrame) - Method in class uk.ac.ic.doc.automed.p2p.gui.PeerApplication
 
getTML(Schema, Schema) - Static method in class uk.ac.ic.doc.automed.tml.TML
 
getTmlList() - Method in class uk.ac.ic.doc.automed.tml.TempPathway
 
getToken(int) - Method in class uk.ac.bbk.dcs.automed.qproc.annotate.grammars.schemes.Schemes
 
getToken(int) - Method in class uk.ac.bbk.dcs.automed.qproc.annotate.grammars.simpleComp.SimpleComp
 
getToken(int) - Method in class uk.ac.bbk.dcs.automed.qproc.annotate.grammars.simpleCompAppend.SimpleCompAppend
 
getToken(int) - Method in class uk.ac.bbk.dcs.automed.qproc.annotate.grammars.simpleCompAppendMonus.SimpleCompAppendMonus
 
getToken(int) - Method in class uk.ac.bbk.dcs.automed.qproc.translators.xquery.XQuery2IQL
 
getToOBID() - Method in class uk.ac.ic.doc.automed.reps.Transformation
Returns the schema object identifier (OBID) of the output of the transformaiton (toObject).
getToObject() - Method in class uk.ac.ic.doc.automed.reps.Transformation
Returns the SchemaObject output of the transformation.
getToObject() - Method in class uk.ac.ic.doc.automed.tml.TML
 
getToObjectsUnmatched() - Method in exception uk.ac.ic.doc.automed.reps.SchemasNotIdenticalException
 
getTool(Object[]) - Static method in class uk.ac.ic.doc.automed.editor.IQLTool
Provide a method suitable for the AutoMed GUI to call and create a GUITool
getTool(Object[]) - Static method in class uk.ac.ic.doc.automed.editor.MatchingTool
 
getTool(Object[]) - Static method in class uk.ac.ic.doc.automed.editor.PathwayOptimiserTool
 
getTool(Object[]) - Static method in class uk.ac.ic.doc.automed.editor.PatternWritingTool
 
getTool(Gui, Object[]) - Static method in class uk.ac.ic.doc.automed.editor.WrapperTool
Provide a method suitable for the AutoMed GUI to call and create a WrapperTool
getTool(Object[]) - Static method in class uk.ac.ic.doc.automed.p2p.gui.PeerApplication
Method for the AutoMed GUI to call to launch the P2P system.
getTool(Object[]) - Static method in class uk.ac.ic.doc.rodex.p2p.gui.QueryTool
Provide a method suitable for the AutoMed GUI to call and create a GUITool
getToolTipText() - Method in interface uk.ac.ic.doc.automed.xmlschema.tree.IconAndTipCarrier
 
getToolTipText() - Method in class uk.ac.ic.doc.automed.xmlschema.tree.IconAndTipRenderer
 
getToSchema() - Method in class uk.ac.ic.doc.automed.p2p.PathwayDescription
 
getToSchema() - Method in exception uk.ac.ic.doc.automed.reps.SchemasNotIdenticalException
 
getToSchema() - Method in class uk.ac.ic.doc.automed.reps.Transformation
Returns the resultant Schema of the transformation.
getToSchema() - Method in class uk.ac.ic.doc.automed.tml.TML
 
getToSID() - Method in class uk.ac.ic.doc.automed.reps.Transformation
Returns the schema identifier (SID) of the resultant schema.
getTotalColumns() - Method in class uk.ac.ic.doc.automed.xml.XMLWriter
 
getTranAction(int, int) - Static method in class uk.ac.ic.doc.automed.STR
Returns the action of transformation between two schemas.
getTranConstraint(int, int) - Static method in class uk.ac.ic.doc.automed.STR
Returns the constraint of a transformation between two schemas.
getTranFromObject(int, int) - Static method in class uk.ac.ic.doc.automed.STR
Returns the schema object to be transformed in a transformation.
getTranFromSchema(int) - Static method in class uk.ac.ic.doc.automed.STR
Returns a list of schema identifiers (SID) from which a particular schema can be derived.
getTranFunction(int, int) - Static method in class uk.ac.ic.doc.automed.STR
Returns the function of a transformation between two schemas.
getTransformation(int, int) - Static method in class uk.ac.ic.doc.automed.reps.Transformation
Returns the transformation between two given schemas.
getTransformation(Schema, Schema) - Static method in class uk.ac.ic.doc.automed.reps.Transformation
Returns the transformation between two given schemas.
getTransformationBetweenSchemas(Schema, Schema) - Static method in class uk.ac.bbk.dcs.automed.evolution.EvolutionUtility
 
getTransformationBetweenSchemas(Schema, Schema) - Static method in class uk.ac.bbk.dcs.automed.evolution2.EvolutionUtility
 
getTransformationObject(int) - Static method in class uk.ac.ic.doc.automed.reps.SchemaObject
 
getTransformationPathwayLength(String, String) - Static method in class uk.ac.bbk.dcs.automed.xml.utilities.XMLUtilities
Prints out the transformation pathway created by the schema transformation algorithm.
getTransformationProperty(int, int, String) - Static method in class uk.ac.ic.doc.automed.STR
Transformation Property
getTransformations(Schema, Schema) - Static method in class uk.ac.bbk.dcs.automed.evolution.EvolutionUtility
 
getTransformations(Schema, Schema) - Static method in class uk.ac.bbk.dcs.automed.evolution2.EvolutionUtility
 
getTransformations() - Method in class uk.ac.ic.doc.automed.p2p.PathwayDescription
XML representation of the transformations
getTransformations() - Method in class uk.ac.ic.doc.automed.reps.Pathway
Return as an array the Transformations that make up this Pathway.
getTransformations() - Method in class uk.ac.ic.doc.automed.reps.Schema
Return an array of all Transformation that go out from a particular schema.
getTransformations() - Method in class uk.ac.ic.doc.automed.reps.SchemaObject
Find the set of Transformations that involve this SchemaObject.
getTransformations() - Static method in class uk.ac.ic.doc.automed.reps.Transformation
 
getTransformations() - Static method in class uk.ac.ic.doc.automed.STR
Returns a vector representing all transformations in the repository
getTransformationsByOBID(int) - Static method in class uk.ac.ic.doc.automed.STR
Returns the pairs of schema identifiers (SID) of all the schema transformations that involve the supplied OBID
getTransformationsFrom() - Method in class uk.ac.ic.doc.automed.reps.Schema
Returns an array of Transformation's that have this schema as the fromSchema field in the transformation table of the STR.
getTransformationSteps() - Method in class uk.ac.bbk.dcs.automed.dataWarehousing.dlt.DataLineageTracing
 
getTransformationsTo() - Method in class uk.ac.ic.doc.automed.reps.Schema
Returns an array of Transformation's that have this schema as the toSchema field in the transformation table of the STR.
getTransformationsToObject(int) - Static method in class uk.ac.ic.doc.automed.reps.Transformation
Get all transformations to a specific schema object
getTransfSteps(String, String) - Method in class uk.ac.bbk.dcs.automed.dataWarehousing.dlt.TransfStep
 
getTransfSteps(Schema, Schema) - Method in class uk.ac.bbk.dcs.automed.dataWarehousing.dlt.TransfStep
 
getTranToObject(int, int) - Static method in class uk.ac.ic.doc.automed.STR
Returns the schema object as a result of a transformation.
getTranToSchema(int) - Static method in class uk.ac.ic.doc.automed.STR
Returns a list of schema identifiers (SID) which are derived from a particular schema.
getTree() - Method in class uk.ac.ic.doc.automed.editor.PatternWritingTool.DynamicTree
 
getTreeCellRendererComponent(JTree, Object, boolean, boolean, boolean, int, boolean) - Method in class uk.ac.ic.doc.automed.xmlschema.tree.IconAndTipRenderer
 
getTreeModel() - Method in class uk.ac.ic.doc.automed.editor.PatternWritingTool.DynamicTree
 
getTupleItems() - Method in class uk.ac.bbk.dcs.automed.qproc.iql.ASGTuple
 
getType() - Method in class uk.ac.bbk.dcs.automed.evolution2.ExtendedConstruct
 
getType() - Method in class uk.ac.bbk.dcs.automed.graph.DirectedGraphNode
 
getType() - Method in class uk.ac.bbk.dcs.automed.qproc.iql.SchemeInfo
 
getType() - Method in class uk.ac.bbk.dcs.automed.xml.xmldssGraph.XMLDSSGraphAttribute
 
getType() - Method in class uk.ac.bbk.dcs.automed.xml.xmldssGraph.XMLDSSGraphText
 
getType() - Method in class uk.ac.ic.doc.automed.p2p.communication.AbstractRequestListener
 
getType() - Method in interface uk.ac.ic.doc.automed.p2p.communication.RequestListener
The handler type
getType() - Method in class uk.ac.ic.doc.automed.p2p.KeepAliveMessageHandler
Return this class type
getType() - Method in class uk.ac.ic.doc.automed.p2p.UnregisterPeerMessageHandler
Return this class type
getType() - Method in class uk.ac.ic.doc.automed.p2p.UpdateDataMessageHandler
Return this class type
getType() - Method in class uk.ac.ic.doc.automed.reps.ModelChangeEvent
 
getType() - Method in class uk.ac.ic.doc.automed.reps.NetworkChangeEvent
 
getType() - Method in class uk.ac.ic.doc.automed.reps.Schema
Return the type (VIRTUAL_TYPE, STORED_TYPE, ...) of this schema..
getType() - Method in class uk.ac.ic.doc.automed.reps.SchemaChangeEvent
 
getType(String) - Method in class uk.ac.ic.doc.automed.reps.TypeHierarchy
Retrieve a specific TypeHierarchy.TypeObject object from this hierarchy
getType(int) - Method in class uk.ac.ic.doc.automed.reps.TypeHierarchy
Retrieve a specific TypeHierarchy.TypeObject object from this hierarchy by tid
getType() - Method in class uk.ac.ic.doc.automed.wrappers.AutoMedBoolean
 
getType() - Method in class uk.ac.ic.doc.automed.wrappers.AutoMedFloat
 
getType() - Method in class uk.ac.ic.doc.automed.wrappers.AutoMedInteger
 
getType() - Method in class uk.ac.ic.doc.automed.wrappers.AutoMedString
 
getType() - Method in class uk.ac.ic.doc.automed.wrappers.AutoMedTime
 
getType() - Method in class uk.ac.ic.doc.automed.wrappers.AutoMedTuple
 
getType() - Method in class uk.ac.ic.doc.automed.wrappers.AutoMedType
Return the Type (INTEGER, TUPLE, ...) of this AutoMedType
getType() - Method in class uk.ac.ic.doc.automed.wrappers.xsdomobject.ComplexType
Return the type
getType() - Method in class uk.ac.ic.doc.automed.wrappers.xsdomobject.XSDOMObject
Get the type of this object
getType() - Method in class uk.ac.ic.doc.rodex.p2p.messages.applicationlayer.SchemaAccessibility
 
getTypeCheckingState() - Method in class uk.ac.bbk.dcs.automed.qproc.QueryProcessorConfiguration
Return the optimisation state
getTypeHierarchy() - Method in class uk.ac.ic.doc.automed.reps.Model
Return the type hierarchy for this model
getTypeHierarchy(int) - Static method in class uk.ac.ic.doc.automed.reps.TypeHierarchy
Get the type hierarchy identified by mid or create one if none exits
getTypeHierarchyId() - Method in class uk.ac.ic.doc.automed.reps.TypeHierarchy
Get the unique identifier for this TypeHierarchy object This is the model id of the Model this hierarchy is attached to
getTypeId(int, String) - Static method in class uk.ac.ic.doc.automed.MDR
 
getTypeID(int, String) - Static method in class uk.ac.ic.doc.automed.reps.TypeHierarchy
 
getTypeId() - Method in class uk.ac.ic.doc.automed.reps.TypeHierarchy.TypeObject
Get the type of this object
getTypeIds() - Static method in class uk.ac.ic.doc.automed.MDR
Get the type id of @param type_name in model @param mid
getTypeList() - Method in class uk.ac.bbk.dcs.automed.qproc.functions.BuiltInFunction
 
getTypeMID(int) - Static method in class uk.ac.ic.doc.automed.MDR
 
getTypeName(int) - Static method in class uk.ac.ic.doc.automed.MDR
 
getTypeName(int) - Static method in class uk.ac.ic.doc.automed.xml.XMLToken
 
getTypeObjects() - Method in class uk.ac.ic.doc.automed.reps.Model
Get a list of TypeHierarchy objects associated to this model
getTypeObjects() - Method in class uk.ac.ic.doc.automed.reps.TypeHierarchy
Get all the type objects this TypeHierarchy object
getTypesForModel(String) - Static method in class uk.ac.ic.doc.automed.MDR
Get the complete rows of TypeHierarchy objects for a specific
Model.
getUnicodeEscapeString(char) - Static method in class uk.ac.ic.doc.automed.xml.XMLSyntax
useful for reporting illegle characters that may not be printable
getUnregisterRequest(String) - Static method in class uk.ac.ic.doc.automed.p2p.util.Util
A message for peer unregistering from the local registry
getUnsuccessfulMessage(AbstractMessage, String, String) - Static method in class uk.ac.ic.doc.automed.p2p.util.Util
 
getUpper() - Method in class uk.ac.ic.doc.automed.reps.ConstructScheme
Returns the upper bound indicating the maximum occurence of the ConstructScheme.
getURI() - Method in class uk.ac.bbk.dcs.automed.xml.wrappers.XMLWrapper
 
getUri() - Method in class uk.ac.ic.doc.automed.wrappers.CSVWrapper
Return the url for this wrapper
getUri() - Method in class uk.ac.ic.doc.automed.wrappers.UMLWrapper
Return the url for this wrapper
getUri() - Method in class uk.ac.ic.doc.automed.wrappers.XMLSchemaWrapper
Return the url for this wrapper
getURL() - Method in class uk.ac.ic.doc.automed.p2p.directory.PeerDescription
Get the URL that the P2PDirectory has this peer down as being located at.
getURL() - Method in class uk.ac.ic.doc.automed.reps.AccessMethod
Returns the URL of the database to which the access method connects.
getUser() - Method in class uk.ac.ic.doc.automed.p2p.directory.PeerDescription
 
getUsername() - Method in class uk.ac.ic.doc.automed.reps.AccessMethod
Returns the username used for connecting to the database.
getUserName() - Method in class uk.ac.ic.doc.rodex.p2p.messages.applicationlayer.AuthenticationTuple
 
getUserName() - Method in class uk.ac.ic.doc.rodex.p2p.messages.applicationlayer.HelloMsg
 
getUseSplitCDATA() - Method in class uk.ac.ic.doc.automed.xml.XMLWriter
due to optimization, writeCDATA() doesn't use the XMLSyntax.splitCDATA() for debug purposes you may want to make it use splitData
getUSRs() - Method in class uk.ac.ic.doc.automed.matching.modules.AbstractModule
 
getValue() - Method in class uk.ac.ic.doc.automed.matching.Instance
Returns the value of this instance.
getValue(int) - Method in class uk.ac.ic.doc.automed.p2p.gui.PeerTableModel
 
getValue() - Method in class uk.ac.ic.doc.automed.p2p.tree.Field
 
getValue() - Method in class uk.ac.ic.doc.automed.reps.SchemaObject
Returns the name/value of the schema object.
getValue() - Method in class uk.ac.ic.doc.automed.ssd.Pattern
 
getValueAt(int, int) - Method in class uk.ac.ic.doc.automed.p2p.gui.PeerTableModel
 
getValueObject() - Method in class uk.ac.ic.doc.automed.util.persist.PersistentValue
Return the actual object
getValuePosInScheme() - Method in class uk.ac.ic.doc.automed.reps.Construct
Returns the position in the construct's scheme where the construct's name is, i.e.
getValueRange(List) - Static method in class uk.ac.ic.doc.rodex.qproc.QueryFunction
Get a value range for a set of query functions
This method supports two types of query expressions: numeric and literal
getValueRange(QuerySubGoal) - Method in class uk.ac.ic.doc.rodex.qproc.RangeBasedQueryRewriter
Get a value range for a query sub-goal in the query based on the functions associated to this sub-goal.
getValueRange(QueryVariable) - Method in class uk.ac.ic.doc.rodex.qproc.RangeBasedQueryRewriter
Get a value range for query variable in the query based on the functions associated to this variable.
getVarAndSchemaInsideList(Cell) - Static method in class uk.ac.bbk.dcs.automed.dataWarehousing.util.Tools4DW
 
getVarAndSchemaInsideTuple(Cell) - Static method in class uk.ac.bbk.dcs.automed.dataWarehousing.util.Tools4DW
 
getVarAsMap() - Method in class uk.ac.bbk.dcs.automed.wrappers.IQLTranslator
 
getVarConsMap() - Method in class uk.ac.bbk.dcs.automed.wrappers.IQLTranslator
 
getVariable() - Method in class uk.ac.ic.doc.rodex.qproc.QueryFunction
 
getVariableMappings(QueryVariable) - Method in class uk.ac.ic.doc.rodex.qproc.QueryAnalyser
Check if a query variable is mappable to one of the variables of the query
If mappings found, return them in a List
getVariables() - Method in class uk.ac.ic.doc.rodex.qproc.QuerySubGoal
Query's head variables
getVarMap(boolean) - Method in class uk.ac.bbk.dcs.automed.qproc.iql.ASGComprehension
 
getVertexComponent(Positionable) - Method in class uk.ac.ic.doc.automed.editor.EditorPanel
 
getVertexComponent(Positionable) - Method in class uk.ac.ic.doc.automed.editor.Gui.EditorFrame
Get a JComponent that is the visualisation of a class that implements the Positionable interface
getVertexDrawable(Positionable) - Method in class uk.ac.ic.doc.automed.editor.EditorPanel
 
getVertexDrawable() - Method in class uk.ac.ic.doc.automed.reps.Construct
Returns the name of the class implementing drawable that should be used to draw nodal elements of this construct.
getView() - Method in class uk.ac.ic.doc.rodex.qproc.MiniConQueryRewriter.MiniConDescription
Return the original ASG object of the view
getViewAsString() - Method in class uk.ac.ic.doc.rodex.qproc.MiniConQueryRewriter.MiniConDescription
Return the view rule to which this MCD is associated
getViewMap() - Method in class uk.ac.bbk.dcs.automed.qproc.reformulate.AtomicViewMap
 
getViewMap() - Method in class uk.ac.bbk.dcs.automed.qproc.reformulate.CompositeViewMap
 
getViewSet(int) - Method in class uk.ac.ic.doc.rodex.qproc.QueryRewriterResult
Return a view set at a specified index.
getViewSets() - Method in class uk.ac.ic.doc.rodex.qproc.QueryRewriterResult
Return the entire sets of view sets
getViewSubGoals() - Method in class uk.ac.ic.doc.rodex.qproc.MiniConQueryRewriter.MiniConDescription
Returns the complete set of sub-goals of the associated view
getVirtualHosts() - Method in class uk.ac.ic.doc.automed.p2p.overlay.OverlayController
 
getVirtualSource() - Method in class uk.ac.bbk.dcs.automed.dataWarehousing.dlt.TransfStep
 
getvSources() - Method in class uk.ac.bbk.dcs.automed.dataWarehousing.dlt.TransfStep
 
getWeakestRelationship(SemanticRelationship[]) - Static method in class uk.ac.ic.doc.automed.matching.RelationshipExtractor
Returns the weakest relationship of the specified relationships.
getWellformedErrorMsg() - Method in class uk.ac.ic.doc.automed.reps.Pathway
 
getWorkersNumber() - Method in class uk.ac.ic.doc.automed.p2p.communication.AbstractDaemon
 
getWrapper() - Method in class uk.ac.ic.doc.automed.reps.AccessMethod
Returns the wrapper used for connecting to the database.
getWrapperSchema() - Method in class uk.ac.ic.doc.automed.wrappers.YattaWrapper
 
getXMLDocument() - Method in class uk.ac.ic.doc.automed.p2p.messages.abstractlayer.AbstractMessage
 
getXMLDocument() - Method in class uk.ac.ic.doc.automed.p2p.tree.Root
 
getXMLDocument() - Method in class uk.ac.ic.doc.automed.p2p.tree.TreeNode
Build a simple XML document for this node.
getXMLDocumentString(Document) - Static method in class uk.ac.ic.doc.automed.p2p.util.Util
Convert an XML document structure in to a printable string
getXMLDSS(String) - Static method in class uk.ac.bbk.dcs.automed.xml.wrappers.NXDBSchemaManager
 
getXMLDSS() - Method in class uk.ac.bbk.dcs.automed.xml.wrappers.XMLWrapper
 
getXMLDSSDoc(String, String) - Static method in class uk.ac.bbk.dcs.automed.xml.wrappers.XMLDSSFromDTD
 
getXMLDSSDoc(String, String, String) - Static method in class uk.ac.bbk.dcs.automed.xml.wrappers.XMLDSSFromXMLSchema
 
getXMLDSSDOM(String, XMLWrapperFactory, boolean) - Static method in class uk.ac.bbk.dcs.automed.xml.wrappers.XMLDSSDOM
 
getXMLDSSExtractionMethod() - Method in class uk.ac.bbk.dcs.automed.xml.wrappers.XMLWrapperFactory
 
getXMLDSSFromAMSchema(Schema) - Static method in class uk.ac.bbk.dcs.automed.xml.wrappers.XMLDSSFromAMSchema
 
getXMLDSSNXDB(NXDBWrapper, XMLWrapperFactory) - Static method in class uk.ac.bbk.dcs.automed.xml.wrappers.XMLDSSNXDB
 
getXMLDSSSAX(String, XMLWrapperFactory, boolean) - Static method in class uk.ac.bbk.dcs.automed.xml.wrappers.XMLDSSSAX
 
getXMLDSSSchema() - Method in class uk.ac.bbk.dcs.automed.xml.relational.XMLDSSFromRDB
 
getXMLInfo() - Method in class uk.ac.ic.doc.automed.wrappers.XMLSchemaWrapper
Return the xmlInfo object for this schema instance
getXMLModel() - Static method in class uk.ac.bbk.dcs.automed.xml.utilities.XMLUtilities
Creates the XML Model in the AutoMed Repository (MDR).
getXMLNode(Document) - Method in class uk.ac.ic.doc.automed.p2p.tree.AutoMedObject
 
getXMLNode(Document) - Method in class uk.ac.ic.doc.automed.p2p.tree.CollectionSet
 
getXMLNode(Document) - Method in class uk.ac.ic.doc.automed.p2p.tree.Field
 
getXMLNode(Document) - Method in class uk.ac.ic.doc.automed.p2p.tree.MainObjectClasses
 
getXMLNode(Document) - Method in class uk.ac.ic.doc.automed.p2p.tree.ObjectCollection
 
getXMLNode(Document) - Method in class uk.ac.ic.doc.automed.p2p.tree.Reference
 
getXMLNode(Document) - Method in class uk.ac.ic.doc.automed.p2p.tree.Root
 
getXMLNode(Document) - Method in class uk.ac.ic.doc.automed.p2p.tree.TreeNode
 
getXMLNode(Document) - Method in class uk.ac.ic.doc.automed.p2p.tree.Value
 
getXMLNode(Document) - Method in class uk.ac.ic.doc.automed.p2p.tree.ValueList
 
getXMLString() - Method in class uk.ac.ic.doc.automed.p2p.tree.TreeNode
Similar to TreeNode.getXMLDocument() but returns the XML string of the document
getXMLVersioni() - Method in class uk.ac.ic.doc.automed.xml.XMLWriter
 
getXPos() - Method in interface uk.ac.ic.doc.automed.editor.Positionable
 
getXPos() - Method in class uk.ac.ic.doc.automed.reps.Construct
 
getXPos() - Method in class uk.ac.ic.doc.automed.reps.Model
 
getXPos() - Method in class uk.ac.ic.doc.automed.reps.Network
 
getXPos() - Method in class uk.ac.ic.doc.automed.reps.Schema
 
getXPos() - Method in class uk.ac.ic.doc.automed.reps.SchemaObject
 
getXSD() - Method in class uk.ac.bbk.dcs.automed.xml.wrappers.XMLDSSDOMFromXSD
 
getYattaRootNode(Schema) - Method in class uk.ac.ic.doc.automed.wrappers.YattaWrapper
 
getYear() - Method in class uk.ac.bbk.dcs.automed.qproc.iql.Cell
 
getYourAddress() - Method in class uk.ac.ic.doc.rodex.p2p.messages.applicationlayer.HelloMsg
 
getYPos() - Method in interface uk.ac.ic.doc.automed.editor.Positionable
 
getYPos() - Method in class uk.ac.ic.doc.automed.reps.Construct
 
getYPos() - Method in class uk.ac.ic.doc.automed.reps.Model
 
getYPos() - Method in class uk.ac.ic.doc.automed.reps.Network
 
getYPos() - Method in class uk.ac.ic.doc.automed.reps.Schema
 
getYPos() - Method in class uk.ac.ic.doc.automed.reps.SchemaObject
 
GLOBAL - Static variable in class uk.ac.ic.doc.automed.p2p.tree.TreeNode
 
GQP - Class in uk.ac.bbk.dcs.automed.qproc
The GQP component coordinates the various global query processor components.
GQP() - Constructor for class uk.ac.bbk.dcs.automed.qproc.GQP
Deprecated. use OldQueryProcessor instead
GQP(Schema, Schema[]) - Constructor for class uk.ac.bbk.dcs.automed.qproc.GQP
Deprecated. use OldQueryProcessor instead
GQPFormatter - Class in uk.ac.bbk.dcs.automed.qproc
MyCustomFormatter formats the LogRecord as follows: date level localized message with parameters
GQPFormatter() - Constructor for class uk.ac.bbk.dcs.automed.qproc.GQPFormatter
 
GraphException - Exception in uk.ac.bbk.dcs.automed.graph
An exception relating to the Graph package.
GraphException(String) - Constructor for exception uk.ac.bbk.dcs.automed.graph.GraphException
 
GraphException(String, Exception) - Constructor for exception uk.ac.bbk.dcs.automed.graph.GraphException
Creates an XMLException when it is acting as a wrapper for other Exceptions.
graphToForest(Forest) - Method in class uk.ac.bbk.dcs.automed.graph.DirectedGraph
This method first divides a given graph into subGraphs.
Greater - Class in uk.ac.bbk.dcs.automed.qproc.functions.comparison
 
Greater() - Constructor for class uk.ac.bbk.dcs.automed.qproc.functions.comparison.Greater
 
GREATER_THAN - Static variable in interface uk.ac.bbk.dcs.automed.qproc.translators.xquery.XQuery2IQLConstants
 
GREATER_THAN_EQUALS - Static variable in interface uk.ac.bbk.dcs.automed.qproc.translators.xquery.XQuery2IQLConstants
 
GreaterEqual - Class in uk.ac.bbk.dcs.automed.qproc.functions.comparison
 
GreaterEqual() - Constructor for class uk.ac.bbk.dcs.automed.qproc.functions.comparison.GreaterEqual
 
GREATERTHAN - Static variable in class uk.ac.ic.doc.automed.wrappers.SQLQuery
 
GREATERTHANEQUAL - Static variable in class uk.ac.ic.doc.automed.wrappers.SQLQuery
 
Group - Class in uk.ac.bbk.dcs.automed.qproc.functions.comparison
 
Group() - Constructor for class uk.ac.bbk.dcs.automed.qproc.functions.comparison.Group
 
GroupCompute - Class in uk.ac.bbk.dcs.automed.qproc.functions.comparison
 
GroupCompute() - Constructor for class uk.ac.bbk.dcs.automed.qproc.functions.comparison.GroupCompute
 
grouplist(String) - Method in class uk.ac.bbk.dcs.automed.qproc.functions.ModifiedArray
 
Gui - Class in uk.ac.ic.doc.automed.editor
Provide a GUI into the AutoMed repositories.
Gui(InputStream) - Constructor for class uk.ac.ic.doc.automed.editor.Gui
 
gui - Static variable in class uk.ac.ic.doc.automed.editor.Gui
 
Gui.EditorFrame - Class in uk.ac.ic.doc.automed.editor
A frame inside the main window to represent either All Networks, the contents of a Network (ie a connect seted of Schemas), or the contents of a Schema.
GuiApplication - Class in uk.ac.ic.doc.rodex.p2p.gui
 
GuiApplication(PeerApplication, InputStream) - Constructor for class uk.ac.ic.doc.rodex.p2p.gui.GuiApplication
Creates a new instance of GuiApplication
GUITool - Class in uk.ac.ic.doc.automed.editor
A GUITool instance provides a window in which as user make interact with the repository.
GUITool(String) - Constructor for class uk.ac.ic.doc.automed.editor.GUITool
 
GUITool(String, boolean, Object) - Constructor for class uk.ac.ic.doc.automed.editor.GUITool
Create a new window that follows the AutoMed GUITool conventions.
GUITool() - Constructor for class uk.ac.ic.doc.automed.editor.GUITool
 

H

handleAction() - Method in class uk.ac.ic.doc.automed.p2p.communication.AbstractClient
Handle thread's interrupted action
handleAction() - Method in class uk.ac.ic.doc.automed.p2p.communication.AbstractServer
Handle thread's interrupted action
handleAction() - Method in class uk.ac.ic.doc.automed.p2p.communication.TCPClient
Handle thread's interrupted action
handleAction() - Method in class uk.ac.ic.doc.automed.p2p.communication.TCPServer
Handle actions
handleAction() - Method in class uk.ac.ic.doc.automed.p2p.communication.UDPClient
Handle thread's interrupted action
handleAction() - Method in class uk.ac.ic.doc.automed.p2p.communication.UDPServer
Handle actions
handleAction() - Method in class uk.ac.ic.doc.automed.p2p.directory.FlushTimeHelper
Implements Theadable interface.
handleAction() - Method in class uk.ac.ic.doc.automed.p2p.directory.HelloTimeHelper
Implements Theadable interface.
handleAction() - Method in class uk.ac.ic.doc.automed.p2p.directory.HoldTimeHelper
Implements Theadable interface.
handleAction() - Method in class uk.ac.ic.doc.automed.util.queue.QueueWorker
 
handleAction() - Method in interface uk.ac.ic.doc.automed.util.thread.Threadable
 
handleJob(Job) - Method in class uk.ac.ic.doc.automed.p2p.directory.FlushTimeHelper
Implement JobHandler interface.
This method is invoked by every job thread to handle job
handleJob(Job) - Method in class uk.ac.ic.doc.automed.p2p.directory.HelloTimeHelper
Implement JobHandler interface.
This method is invoked by every job thread to handle job
handleJob(Job) - Method in class uk.ac.ic.doc.automed.p2p.directory.HoldTimeHelper
Implement JobHandler interface.
This method is invoked by every job thread to handle job
handleJob(Job) - Method in interface uk.ac.ic.doc.automed.util.queue.JobHandler
 
handler - Variable in class uk.ac.ic.doc.automed.p2p.communication.AbstractClient
 
handleRequest(byte[], ResponseHandler) - Method in class uk.ac.ic.doc.automed.p2p.AutoMedPeer
Implements the method for handling network requests from other peers.
handleRequest(ResponseHandler) - Method in class uk.ac.ic.doc.automed.p2p.BrokerRequestReceiver
 
handleRequest(byte[], ResponseHandler) - Method in class uk.ac.ic.doc.automed.p2p.communication.AbstractRequestListener
Handle both TCP and UDP requests
handleRequest() - Method in class uk.ac.ic.doc.automed.p2p.communication.AbstractRequestListener
Deprecated. use AbstractRequestListener.handleRequest(byte[] dataReceived, ResponseHandler outputHandler) instead
handleRequest(byte[], OutputStream) - Method in class uk.ac.ic.doc.automed.p2p.communication.AbstractRequestListener
Deprecated. use AbstractRequestListener.handleRequest(byte[] dataReceived, ResponseHandler outputHandler) instead
handleRequest(byte[]) - Method in class uk.ac.ic.doc.automed.p2p.communication.AbstractRequestListener
Deprecated. use AbstractRequestListener.handleRequest(byte[] dataReceived, ResponseHandler outputHandler) instead
handleRequest(byte[], ResponseHandler) - Method in interface uk.ac.ic.doc.automed.p2p.communication.RequestListener
An unified handler method for both UDP and TCP protocols
handleRequest(byte[], OutputStream) - Method in interface uk.ac.ic.doc.automed.p2p.communication.RequestListener
Deprecated. use RequestListener.handleRequest(byte[] dataReceived, ResponseHandler outputHandler) instead
handleRequest(byte[]) - Method in interface uk.ac.ic.doc.automed.p2p.communication.RequestListener
Deprecated. use RequestListener.handleRequest(byte[] dataReceived, ResponseHandler outputHandler) instead
handleRequest(byte[], ResponseHandler) - Method in class uk.ac.ic.doc.automed.p2p.directory.P2PDirectory
Handle requests from peers
handleRequest(byte[], ResponseHandler) - Method in class uk.ac.ic.doc.automed.p2p.KeepAliveMessageHandler
Handle keep-alive response
handleRequest(byte[], ResponseHandler) - Method in class uk.ac.ic.doc.automed.p2p.P2PRegistry
 
handleRequest(byte[], ResponseHandler) - Method in class uk.ac.ic.doc.automed.p2p.SimpleMessageHandler
 
handleRequest(byte[], ResponseHandler) - Method in class uk.ac.ic.doc.automed.p2p.UpdateDataMessageHandler
Overrides AbstractRequestListener method to handler TCP response
HandlerNotFoundException - Exception in uk.ac.ic.doc.automed.p2p
 
HandlerNotFoundException(String) - Constructor for exception uk.ac.ic.doc.automed.p2p.HandlerNotFoundException
Creates a new instance of HandlerNotFoundException
handleUDPRequest(byte[]) - Method in class uk.ac.ic.doc.automed.p2p.communication.AbstractRequestListener
Deprecated. use AbstractRequestListener.handleRequest(byte[] dataReceived, ResponseHandler outputHandler) instead
handleUDPRequest(String, int, byte[]) - Method in class uk.ac.ic.doc.automed.p2p.communication.AbstractRequestListener
Deprecated. use AbstractRequestListener.handleRequest(byte[] dataReceived, ResponseHandler outputHandler) instead
handleUDPRequest(InetAddress, int, byte[]) - Method in class uk.ac.ic.doc.automed.p2p.communication.AbstractRequestListener
Deprecated. use AbstractRequestListener.handleRequest(byte[] dataReceived, ResponseHandler outputHandler) instead
handleUDPRequest(byte[]) - Method in interface uk.ac.ic.doc.automed.p2p.communication.RequestListener
Deprecated. use RequestListener.handleRequest(byte[] dataReceived, ResponseHandler outputHandler) instead
handleUDPRequest(String, int, byte[]) - Method in interface uk.ac.ic.doc.automed.p2p.communication.RequestListener
Deprecated. use RequestListener.handleRequest(byte[] dataReceived, ResponseHandler outputHandler) instead
handleUDPRequest(InetAddress, int, byte[]) - Method in interface uk.ac.ic.doc.automed.p2p.communication.RequestListener
Deprecated. use RequestListener.handleRequest(byte[] dataReceived, ResponseHandler outputHandler) instead
hasChild(AutoLayoutPositionable) - Method in class uk.ac.ic.doc.automed.editor.autolayout.AutoLayoutSchemaObject
Function return true if array returned by getSchemaObjectsToLayout() contain u.
hasConstants() - Method in class uk.ac.ic.doc.rodex.qproc.QueryAnalyser
A quick check whether there are constants in the query
hasField(String) - Method in class uk.ac.ic.doc.rodex.qproc.QuerySubGoal
Check that it contains a field
hasFunctions(QueryVariable) - Method in class uk.ac.ic.doc.rodex.qproc.QueryAnalyser
Test if a QueryVariable has any associated functions
hash(String, int) - Method in class uk.ac.ic.doc.automed.util.hashing.OrderPreservedHashing
Hash a
hash(String, int) - Method in interface uk.ac.ic.doc.automed.util.hashing.StringHash
 
hashCode() - Method in class uk.ac.bbk.dcs.automed.qproc.reformulate.ViewKey
 
hashCode() - Method in class uk.ac.ic.doc.automed.matching.SchemaElement
Returns a hash code for this SchemaElement object.
hashCode() - Method in class uk.ac.ic.doc.automed.matching.SchemaElementPair
 
hashCode() - Method in class uk.ac.ic.doc.automed.p2p.AutoMedPeer.PeerProcessDescription
 
hashCode() - Method in class uk.ac.ic.doc.automed.p2p.directory.ModelDescription
 
hashCode() - Method in class uk.ac.ic.doc.automed.p2p.directory.PeerDescription
 
hashCode() - Method in class uk.ac.ic.doc.automed.p2p.directory.SchemaDescription
 
hashCode() - Method in class uk.ac.ic.doc.automed.reps.PersistentKey
 
hashCode() - Method in class uk.ac.ic.doc.rodex.qproc.QuerySubGoal
Override the Object.hashCode() method for use in a collection.
Basically this method helps produces unique key for a QuerySubGoal
object when it is stored in a collection, such as HashTable/code>
hasNext() - Method in class uk.ac.bbk.dcs.automed.qproc.iql.ASGCollectionIterator
 
hasNext() - Method in class uk.ac.ic.doc.automed.qproc.cache.DefaultQueryCache
Implements mandatory methods of the ListIterator interface
hasNext() - Method in class uk.ac.ic.doc.automed.util.db.DBResultSet
is there a next record?
hasObject(SchemaObject) - Method in class uk.ac.ic.doc.automed.reps.Schema
Determines if the schema contains the given schema object.
hasTextNodes(Element) - Static method in class uk.ac.bbk.dcs.automed.xml.utilities.XMLUtilities
 
hasUnequalConstantsInTwoTupes(Cell, Cell) - Static method in class uk.ac.bbk.dcs.automed.dataWarehousing.util.Tools4DW
 
hdm_constraint - Static variable in class uk.ac.ic.doc.automed.reps.Syntax.Token
 
hdm_edge - Static variable in class uk.ac.ic.doc.automed.reps.Syntax.Token
 
HDM_EDGE_CONS_TYPE - Static variable in class uk.ac.ic.doc.automed.wrappers.Constants
 
HDM_EDGE_CONS_TYPE - Static variable in class uk.ac.ic.doc.automed.wrappers.HDMWrapperFactory
 
HDM_MODEL_ID - Static variable in class uk.ac.ic.doc.automed.wrappers.Constants
HDM constants (originally declared in HDMWrapperFactory class
HDM_MODEL_NAME - Static variable in class uk.ac.ic.doc.automed.wrappers.Constants
 
HDM_MODEL_NAME - Static variable in class uk.ac.ic.doc.automed.wrappers.HDMWrapperFactory
 
HDM_MODEL_PREFIX - Static variable in class uk.ac.ic.doc.automed.wrappers.Constants
 
HDM_MODEL_PREFIX - Static variable in class uk.ac.ic.doc.automed.wrappers.HDMWrapperFactory
 
hdm_node - Static variable in class uk.ac.ic.doc.automed.reps.Syntax.Token
 
HDM_NODE_CONS_TYPE - Static variable in class uk.ac.ic.doc.automed.wrappers.Constants
 
HDM_NODE_CONS_TYPE - Static variable in class uk.ac.ic.doc.automed.wrappers.HDMWrapperFactory
 
hdm_none - Static variable in class uk.ac.ic.doc.automed.reps.Syntax.Token
 
hdm_reference - Static variable in class uk.ac.ic.doc.automed.reps.Syntax.Token
 
HDM_TYPE_ANY - Static variable in class uk.ac.ic.doc.automed.reps.TypeHierarchy
 
HDM_TYPE_BOOL - Static variable in class uk.ac.ic.doc.automed.reps.TypeHierarchy
 
HDM_TYPE_C - Static variable in class uk.ac.ic.doc.automed.reps.Scheme
Scheme relates to a constraint sentence in HDM
HDM_TYPE_E - Static variable in class uk.ac.ic.doc.automed.reps.Scheme
Scheme relates to edge name in HDM when instantiating the containing construct, this scheme position takes the name of the new edge to be created in HDM
HDM_TYPE_FLOAT - Static variable in class uk.ac.ic.doc.automed.reps.TypeHierarchy
 
HDM_TYPE_INTEGER - Static variable in class uk.ac.ic.doc.automed.reps.TypeHierarchy
 
HDM_TYPE_MAXIMUM - Static variable in class uk.ac.ic.doc.automed.reps.Scheme
 
HDM_TYPE_MINIMUM - Static variable in class uk.ac.ic.doc.automed.reps.Scheme
 
HDM_TYPE_N - Static variable in class uk.ac.ic.doc.automed.reps.Scheme
Scheme relates to node name in HDM.
HDM_TYPE_N1 - Static variable in class uk.ac.ic.doc.automed.reps.Scheme
Deprecated.  
HDM_TYPE_N2 - Static variable in class uk.ac.ic.doc.automed.reps.Scheme
Deprecated.  
HDM_TYPE_NUMERIC - Static variable in class uk.ac.ic.doc.automed.reps.TypeHierarchy
 
HDM_TYPE_OID - Static variable in class uk.ac.ic.doc.automed.reps.TypeHierarchy
 
HDM_TYPE_P1 - Static variable in class uk.ac.ic.doc.automed.reps.Scheme
Deprecated.  
HDM_TYPE_P2 - Static variable in class uk.ac.ic.doc.automed.reps.Scheme
Deprecated.  
HDM_TYPE_R - Static variable in class uk.ac.ic.doc.automed.reps.Scheme
Scheme relates to node or edge name/s in HDM and to other Construct/s in the automed.reps API.
HDM_TYPE_STRING - Static variable in class uk.ac.ic.doc.automed.reps.TypeHierarchy
 
HDM_TYPE_Z - Static variable in class uk.ac.ic.doc.automed.reps.Scheme
Scheme has no HDM representation
HdmStore - Class in uk.ac.bbk.dcs.automed.hdmstore
A HdmStore allows data to be stored and queried in an HDM repository which is implemented in a Postgres databas).
HdmStore() - Constructor for class uk.ac.bbk.dcs.automed.hdmstore.HdmStore
Default constructor assumes only error messages should be displayed (not debugs)
HdmStore(Debug) - Constructor for class uk.ac.bbk.dcs.automed.hdmstore.HdmStore
Constructor is passed debug class to send debug & error messages to
HdmStoreCmd - Class in uk.ac.bbk.dcs.automed.hdmstore
A command line processor for the HDM store which can be used as an alternative to the API..
HdmStoreCmd(String[]) - Constructor for class uk.ac.bbk.dcs.automed.hdmstore.HdmStoreCmd
Construct a HdmStoreCmd and process the command line arguments
HdmStoreException - Exception in uk.ac.bbk.dcs.automed.hdmstore
The class of exceptions generated by DataSourceRepository.
HdmStoreException(String) - Constructor for exception uk.ac.bbk.dcs.automed.hdmstore.HdmStoreException
 
hdmStoreExists(String) - Method in class uk.ac.bbk.dcs.automed.hdmstore.HdmStore
Is there an HDM store with the passed name in the repository?
HDMToHighLevel - Class in uk.ac.ic.doc.automed.reps
A class to do HDM to high level model transformations
HDMToHighLevel(Schema) - Constructor for class uk.ac.ic.doc.automed.reps.HDMToHighLevel
Creates a new instance of XMLSchemaTransform
hdmToHighLevelTypeLookup(String) - Method in class uk.ac.ic.doc.automed.reps.TypeHierarchy
Method to return the high level type in model @param mid equivalent to the HDM type @param hdmTypeName
hdmToRelational() - Method in class uk.ac.ic.doc.automed.reps.HDMToHighLevel
Transform the HDM elements in this schema into relational elements
hdmToSQL(Gui, Object[]) - Static method in class uk.ac.ic.doc.automed.editor.Gui
Converts an HDM model to SQL
hdmToXML(Gui, Object[]) - Static method in class uk.ac.ic.doc.automed.editor.Gui
Converts an HDM model to XML
hdmToXMLSchema(SchemaObject) - Method in class uk.ac.ic.doc.automed.reps.HDMToHighLevel
Transform the HDM elements in this schema into XMLSchema elements
HDMTransformations - Class in uk.ac.ic.doc.automed.reps
 
HDMTransformations(Schema) - Constructor for class uk.ac.ic.doc.automed.reps.HDMTransformations
Creates a new instance of HDMTransformations
HdmWrapper - Class in uk.ac.bbk.dcs.automed.hdmstore
A Wrapper for the HDM data store.
HdmWrapper(AccessMethod, String) - Constructor for class uk.ac.bbk.dcs.automed.hdmstore.HdmWrapper
 
HDMWrapper - Class in uk.ac.ic.doc.automed.wrappers
A Wrapper for the HDM data store.
HDMWrapper(AccessMethod, String) - Constructor for class uk.ac.ic.doc.automed.wrappers.HDMWrapper
 
HdmWrapperFactory - Class in uk.ac.bbk.dcs.automed.hdmstore
 
HdmWrapperFactory() - Constructor for class uk.ac.bbk.dcs.automed.hdmstore.HdmWrapperFactory
 
HDMWrapperFactory - Class in uk.ac.ic.doc.automed.wrappers
 
HDMWrapperFactory() - Constructor for class uk.ac.ic.doc.automed.wrappers.HDMWrapperFactory
Creates a new instance of the HDMWrapperFactory
head - Variable in class uk.ac.bbk.dcs.automed.qproc.iql.ASGComprehension
 
headPattern - Variable in class uk.ac.bbk.dcs.automed.wrappers.IQLTranslator
 
HELLO - Static variable in class uk.ac.ic.doc.automed.p2p.protocol.P2PConstants
Context: hello peer
HELLO_ACK - Static variable in class uk.ac.ic.doc.automed.p2p.protocol.P2PConstants
 
HelloAckMsg - Class in uk.ac.ic.doc.rodex.p2p.messages.applicationlayer
HelloAckMsg.java

The Hello acknowledgement message
HelloAckMsg(String, String, String, int, AuthenticationTuple) - Constructor for class uk.ac.ic.doc.rodex.p2p.messages.applicationlayer.HelloAckMsg
Creates a new instance of HelloMsg
HelloAckMsg(String, String, String) - Constructor for class uk.ac.ic.doc.rodex.p2p.messages.applicationlayer.HelloAckMsg
 
HelloMsg - Class in uk.ac.ic.doc.rodex.p2p.messages.applicationlayer
HelloMsg.java

The Hello message exchanged between peers
HelloMsg(String, String, String, int, AuthenticationTuple) - Constructor for class uk.ac.ic.doc.rodex.p2p.messages.applicationlayer.HelloMsg
Creates a new instance of HelloMsg
HelloMsg(String, String, String) - Constructor for class uk.ac.ic.doc.rodex.p2p.messages.applicationlayer.HelloMsg
 
HelloTimeHelper - Class in uk.ac.ic.doc.automed.p2p.directory
 
HelloTimeHelper(Queue, P2PDirectory) - Constructor for class uk.ac.ic.doc.automed.p2p.directory.HelloTimeHelper
Creates a new instance of HoldTimeHelper
helpGetCurrentModel - Static variable in class uk.ac.ic.doc.automed.editor.Editor
 
helpHelp - Static variable in class uk.ac.ic.doc.automed.editor.CommandLineDriver
 
helpSyntax - Static variable in class uk.ac.ic.doc.automed.editor.CommandLineDriver
 
HEP - Class in uk.ac.ic.doc.rodex.p2p.protocol
HEP.java

llo Protocol is used by peers and directory service peers to discover each other on the network.
hid(String) - Method in class uk.ac.bbk.dcs.automed.hdmstore.HdmStore
Given an HDM store name return its row id number (or -1 if it does not exist)
hid() - Method in class uk.ac.bbk.dcs.automed.hdmstore.Span
Get the hid
hide() - Method in class uk.ac.ic.doc.automed.editor.DetachedTextEditor
Hide the text editor dialog
hide(Object) - Method in class uk.ac.ic.doc.automed.editor.Gui
Hide an object from the GUI, such that is does not display it in any of its graphical views of the repository.
hideConstruct(Construct) - Method in class uk.ac.ic.doc.automed.editor.Gui
Prevent the GUI from displaying any SchemaObject of a certain Construct type in any window.
hideConstructs(Gui, Object[]) - Static method in class uk.ac.ic.doc.automed.editor.Gui
Gui menu handler to access #hideConstruct().
hideInternalSeperators(String) - Static method in class uk.ac.bbk.dcs.automed.hdmstore.Edge
Remove commas that are not at the 'top level' e.g.
hideInternalSpaces(String) - Static method in class uk.ac.bbk.dcs.automed.hdmstore.HdmStoreCmd
Change any spaces within an edge thats a span to another character
hideModel(Model) - Method in class uk.ac.ic.doc.automed.editor.Gui
Prevent the GUI from displaying any SchemaObject of a certain Model type in any window.
hideModels(Gui, Object[]) - Static method in class uk.ac.ic.doc.automed.editor.Gui
Gui menu handler to access #hideModel().
hidePositionable(Positionable) - Method in class uk.ac.ic.doc.automed.editor.Gui
Prevent the GUI from displaying a Positionable
hidePositionables(Gui, Object[]) - Static method in class uk.ac.ic.doc.automed.editor.Gui
Gui menu handler to access #hidePositionable(), calling that method for each Positionable passed.
highLevelToHDM(Gui, Object[]) - Static method in class uk.ac.ic.doc.automed.editor.Gui
Converts any high level model to HDM
HighLevelToHDM - Class in uk.ac.ic.doc.automed.reps
Class to convert any high level schema into an equivalent HDM schema
HighLevelToHDM(Schema) - Constructor for class uk.ac.ic.doc.automed.reps.HighLevelToHDM
Creates a new instance of HighLevelToHDM
highLevelToHDMTypeLookup(int) - Method in class uk.ac.ic.doc.automed.reps.TypeHierarchy
Method to return the name of the HDM type equivalent to to the high level type @param tid
HoldTimeHelper - Class in uk.ac.ic.doc.automed.p2p.directory
 
HoldTimeHelper(Queue, P2PDirectory, HelloTimeHelper) - Constructor for class uk.ac.ic.doc.automed.p2p.directory.HoldTimeHelper
Creates a new instance of HoldTimeHelper
host - Variable in class uk.ac.ic.doc.automed.p2p.AutoMedPeer.PeerProcessDescription
 
hostname - Variable in class uk.ac.ic.doc.automed.p2p.directory.PeerDescription
 
HOUR - Static variable in class uk.ac.ic.doc.automed.wrappers.AutoMedTime
Granularity of one hour
HsqldbWrapper - Class in uk.ac.ic.doc.automed.wrappers
A lower level wrapper for the conforming to the AutoMed SQL high level wrapper for HSQLDB databases.
HsqldbWrapper() - Constructor for class uk.ac.ic.doc.automed.wrappers.HsqldbWrapper
 
HsqldbWrapper(AccessMethod, String) - Constructor for class uk.ac.ic.doc.automed.wrappers.HsqldbWrapper
Generate a new wrapper instance from information held in the repository about how to access a data source.
HsqldbWrapperFactory - Class in uk.ac.ic.doc.automed.wrappers
A lower level wrapper factory for Hsqldb SQL databases conforming to the AutoMed SQL high level wrapper factory.
HsqldbWrapperFactory() - Constructor for class uk.ac.ic.doc.automed.wrappers.HsqldbWrapperFactory
 
hyphen - Static variable in class uk.ac.ic.doc.automed.reps.Syntax.Token
 

I

icon - Variable in class uk.ac.ic.doc.automed.wrappers.xsdomobject.XSDOMObject
The icon for this object in the Schema Editor
IconAndTipCarrier - Interface in uk.ac.ic.doc.automed.xmlschema.tree
 
IconAndTipRenderer - Class in uk.ac.ic.doc.automed.xmlschema.tree
 
IconAndTipRenderer(Icon, Icon, Icon) - Constructor for class uk.ac.ic.doc.automed.xmlschema.tree.IconAndTipRenderer
 
id() - Method in class uk.ac.bbk.dcs.automed.hdmstore.Span
Get the id
Id - Class in uk.ac.bbk.dcs.automed.qproc.functions
 
Id() - Constructor for class uk.ac.bbk.dcs.automed.qproc.functions.Id
 
ID - Static variable in class uk.ac.ic.doc.automed.p2p.tree.TreeNode
 
id - Variable in class uk.ac.ic.doc.automed.p2p.tree.TreeNode
 
ident - Static variable in class uk.ac.ic.doc.automed.reps.Syntax.Token
 
identifier - Static variable in class uk.ac.ic.doc.automed.reps.Syntax.Token
 
IDENTIFIER_TOKEN - Static variable in class uk.ac.ic.doc.automed.wrappers.AutoMedQuery
 
identifierSafe(String) - Static method in class uk.ac.ic.doc.automed.reps.Syntax
 
identifySubGraphs() - Method in class uk.ac.bbk.dcs.automed.graph.DirectedGraph
Discovers the subGraphs in the graph
IdentToken - Static variable in class uk.ac.bbk.dcs.automed.qproc.iql.FSym
 
idNodeExpand(Gui, Object[]) - Static method in class uk.ac.ic.doc.automed.editor.Gui
Performs an id Node expand
idNodeExpand(SchemaObject) - Method in class uk.ac.ic.doc.automed.reps.HDMTransformations
The reverse of an id node merge.
idNodeMerge(Gui, Object[]) - Static method in class uk.ac.ic.doc.automed.editor.Gui
Performs an id Node merge
idNodeMerge(SchemaObject) - Method in class uk.ac.ic.doc.automed.reps.HDMTransformations
ID node merge.
If - Class in uk.ac.bbk.dcs.automed.qproc.functions.logical
 
If() - Constructor for class uk.ac.bbk.dcs.automed.qproc.functions.logical.If
 
IF - Static variable in interface uk.ac.bbk.dcs.automed.qproc.translators.xquery.XQuery2IQLConstants
 
IGNORABLE_WHITESPACE - Static variable in interface uk.ac.ic.doc.automed.xml.XMLifyConstants
 
ignorableWhitespace(char[], int, int) - Method in class uk.ac.ic.doc.automed.xml.XMLReader
 
IlegleXMLCharacterException - Exception in uk.ac.ic.doc.automed.xml
 
IlegleXMLCharacterException(String) - Constructor for exception uk.ac.ic.doc.automed.xml.IlegleXMLCharacterException
 
IllegalOperationException - Exception in uk.ac.ic.doc.automed.reps
 
IllegalOperationException(String) - Constructor for exception uk.ac.ic.doc.automed.reps.IllegalOperationException
 
IllegalOperationException(String, Throwable) - Constructor for exception uk.ac.ic.doc.automed.reps.IllegalOperationException
 
IllegalReplyException - Exception in uk.ac.ic.doc.automed.p2p
 
IllegalReplyException() - Constructor for exception uk.ac.ic.doc.automed.p2p.IllegalReplyException
 
IllegalReplyException(String, String) - Constructor for exception uk.ac.ic.doc.automed.p2p.IllegalReplyException
 
image - Variable in class uk.ac.bbk.dcs.automed.qproc.annotate.grammars.schemes.Token
The string image of the token.
image - Variable in class uk.ac.bbk.dcs.automed.qproc.annotate.grammars.simpleComp.Token
The string image of the token.
image - Variable in class uk.ac.bbk.dcs.automed.qproc.annotate.grammars.simpleCompAppend.Token
The string image of the token.
image - Variable in class uk.ac.bbk.dcs.automed.qproc.annotate.grammars.simpleCompAppendMonus.Token
The string image of the token.
image - Variable in class uk.ac.bbk.dcs.automed.qproc.translators.xquery.Token
The string image of the token.
implementSchema(String, String) - Method in class uk.ac.ic.doc.automed.p2p.MessageHandler
 
importanceLevel(SchemaObject) - Static method in class uk.ac.ic.doc.automed.editor.autolayout.AutoLayout
 
importConstructs(InputStream) - Method in class uk.ac.ic.doc.automed.reps.Model
 
importFile() - Method in class uk.ac.ic.doc.automed.editor.Gui.EditorFrame
 
importFile() - Method in class uk.ac.ic.doc.automed.editor.Gui
 
importMenuItem - Variable in class uk.ac.ic.doc.automed.editor.Gui
 
importSchemaObjects(InputStream) - Method in class uk.ac.ic.doc.automed.reps.Schema
 
importSchemes(InputStream) - Method in class uk.ac.ic.doc.automed.reps.Construct
 
importTransformations(InputStream) - Static method in class uk.ac.ic.doc.automed.reps.Transformation
 
importTransformations(InputStream, String) - Static method in class uk.ac.ic.doc.automed.reps.Transformation
 
In - Static variable in class uk.ac.bbk.dcs.automed.qproc.iql.QSym
 
IN - Static variable in interface uk.ac.bbk.dcs.automed.qproc.translators.xquery.XQuery2IQLConstants
 
inBuf - Variable in class uk.ac.bbk.dcs.automed.qproc.annotate.grammars.schemes.SimpleCharStream
 
inBuf - Variable in class uk.ac.bbk.dcs.automed.qproc.annotate.grammars.simpleComp.SimpleCharStream
 
inBuf - Variable in class uk.ac.bbk.dcs.automed.qproc.annotate.grammars.simpleCompAppend.SimpleCharStream
 
inBuf - Variable in class uk.ac.bbk.dcs.automed.qproc.annotate.grammars.simpleCompAppendMonus.SimpleCharStream
 
inBuf - Variable in class uk.ac.bbk.dcs.automed.qproc.translators.xquery.SimpleCharStream
 
inclusionExpand(Gui, Object[]) - Static method in class uk.ac.ic.doc.automed.editor.Gui
Performs an inclusion expand
inclusionExpand(SchemaObject, SchemaObject) - Method in class uk.ac.ic.doc.automed.reps.HDMTransformations
Inclusion expand transformation
inclusionMerge(Gui, Object[]) - Static method in class uk.ac.ic.doc.automed.editor.Gui
Performs an inclusion merge
inclusionMerge(SchemaObject, SchemaObject) - Method in class uk.ac.ic.doc.automed.reps.HDMTransformations
Inclusion merge transformation
Incompatibility - Class in uk.ac.ic.doc.automed.matching.relationships
The Incompatibility class represent the lack of any compatible semantic relationship between SchemaElement objects.
IncompleteMessageException - Exception in uk.ac.ic.doc.automed.p2p.messages.abstractlayer
 
IncompleteMessageException() - Constructor for exception uk.ac.ic.doc.automed.p2p.messages.abstractlayer.IncompleteMessageException
 
IncompleteMessageException(String) - Constructor for exception uk.ac.ic.doc.automed.p2p.messages.abstractlayer.IncompleteMessageException
 
IncompleteMessageException(Throwable) - Constructor for exception uk.ac.ic.doc.automed.p2p.messages.abstractlayer.IncompleteMessageException
 
IncompleteMessageException(String, Throwable) - Constructor for exception uk.ac.ic.doc.automed.p2p.messages.abstractlayer.IncompleteMessageException
 
InconsistentException - Exception in uk.ac.ic.doc.automed
A manipulation of the repository that should always succeed has failed.
InconsistentException(String) - Constructor for exception uk.ac.ic.doc.automed.InconsistentException
 
InconsistentException(String, Exception) - Constructor for exception uk.ac.ic.doc.automed.InconsistentException
Creates an InconsistentException when it is acting as a wrapper for other Exceptions.
indeces - Static variable in class uk.ac.ic.doc.automed.matching.SchemaElementPairRelationship
 
INDENT - Static variable in class uk.ac.ic.doc.automed.editor.DrawNetwork
 
INDEX - Static variable in class uk.ac.ic.doc.automed.matching.relationships.Compatibility
 
INDEX - Static variable in class uk.ac.ic.doc.automed.matching.relationships.Disjointness
 
INDEX - Static variable in class uk.ac.ic.doc.automed.matching.relationships.Equivalence
 
INDEX - Static variable in class uk.ac.ic.doc.automed.matching.relationships.Incompatibility
 
INDEX - Static variable in class uk.ac.ic.doc.automed.matching.relationships.Overlapness
 
INDEX - Static variable in class uk.ac.ic.doc.automed.matching.relationships.Subset
 
INDEX - Static variable in class uk.ac.ic.doc.automed.matching.relationships.Superset
 
INDEX - Static variable in class uk.ac.ic.doc.automed.wrappers.SQLWrapperFactory
A feature option to model SQL Indexes in any Schema the factory generates
IndexOf - Class in uk.ac.bbk.dcs.automed.qproc.functions.string
Class Task Description
IndexOf() - Constructor for class uk.ac.bbk.dcs.automed.qproc.functions.string.IndexOf
 
indexOf(Schema) - Method in class uk.ac.ic.doc.automed.reps.Pathway
Returns the index of a given Schema within the pathway.
INF_QLTY_COMPLETE - Static variable in class uk.ac.ic.doc.rodex.qproc.QualityIndicator
complete answer
INF_QLTY_PARTIAL - Static variable in class uk.ac.ic.doc.rodex.qproc.QualityIndicator
partial answer
info(String) - Static method in class uk.ac.ic.doc.automed.util.Logger
 
info(Class, String, String) - Static method in class uk.ac.ic.doc.automed.util.Logger
Overloading method to display more information about a message
inform(JFrame, String, String) - Static method in class uk.ac.ic.doc.automed.p2p.gui.P2PGui
 
informSuccess(JFrame) - Static method in class uk.ac.ic.doc.automed.p2p.gui.P2PGui
 
init() - Method in class uk.ac.ic.doc.automed.p2p.communication.AbstractDaemon
 
init() - Method in class uk.ac.ic.doc.automed.p2p.communication.MulticastServer
Customise init method to use MutltiCastSocket
init() - Method in class uk.ac.ic.doc.automed.p2p.communication.UDPServer
Initialises the UDP server socket and a JobHandler queue to handle messages received by this socket.
init_actions() - Method in class uk.ac.bbk.dcs.automed.qproc.iql.EnvParser
Action encapsulation object initializer.
init_actions() - Method in class uk.ac.bbk.dcs.automed.qproc.iql.QParser
Action encapsulation object initializer.
initAuthentication() - Method in class uk.ac.ic.doc.automed.p2p.AutoMedPeer
Initialise the authentication module
initAutoLayoutObjsTable(Schema) - Static method in class uk.ac.ic.doc.automed.editor.autolayout.AutoLayoutERObject
 
initAutoLayoutPositionablesTable(Schema) - Static method in class uk.ac.ic.doc.automed.editor.autolayout.AutoLayoutPositionable
Initialize internal HashMap.
initAutoLayoutPositionablesTable(Schema) - Static method in class uk.ac.ic.doc.automed.editor.autolayout.AutoLayoutSchemaObject
 
initAutoLayoutPositionablesTable(Schema) - Static method in class uk.ac.ic.doc.automed.editor.autolayout.AutoLayoutSpringObject
 
initAutoLayoutPositionablesTable(Schema) - Static method in class uk.ac.ic.doc.automed.editor.autolayout.AutoLayoutTreeObject
 
initButtons() - Method in class uk.ac.ic.doc.automed.p2p.gui.AllSchemasFrame
 
initButtons() - Method in class uk.ac.ic.doc.automed.p2p.gui.MySchemasFrame
 
initButtons() - Method in class uk.ac.ic.doc.automed.p2p.gui.SchemaInfoFrame
 
initComponents() - Method in class uk.ac.ic.doc.automed.p2p.gui.LoginFrame
 
initDirectory() - Method in class uk.ac.ic.doc.automed.p2p.AutoMedPeer
This special method offers the flexibility of starting a P2PDirectory
object for and 'attaching' it to a peer.
initDirectoryPeerHello() - Method in class uk.ac.ic.doc.rodex.p2p.protocol.HEP
Initialise hello process for directory service peer
initDirectoryPeerHello(DirectoryServicePeer) - Method in class uk.ac.ic.doc.rodex.p2p.protocol.HEP
Initialise hello process for directory service peer.
initDirectoryRepository() - Method in class uk.ac.ic.doc.automed.p2p.AutoMedPeer
This method allows a peer to indirectly re-initialises the directory repository
used by the peer's P2PDirectory instance
initDirectoryRepository() - Method in class uk.ac.ic.doc.rodex.p2p.DirectoryServicePeer
This method allows a peer to indirectly re-initialises the directory repository
used by the peer's P2PDirectory instance
initGui() - Method in class uk.ac.ic.doc.automed.p2p.gui.LoginFrame
 
initGui(JButton[]) - Method in class uk.ac.ic.doc.automed.p2p.gui.MainFrame
 
initGui() - Method in class uk.ac.ic.doc.rodex.p2p.gui.LoginGui
 
initHelloProtocol() - Method in class uk.ac.ic.doc.rodex.p2p.DirectoryServicePeer
Intialise the hello protocol for directory service
initHelloProtocol() - Method in class uk.ac.ic.doc.rodex.p2p.Peer
Initialise the hello protocol based on the role of this peer on the network.
initialise() - Method in class uk.ac.bbk.dcs.automed.wrappers.IQLTranslator
 
initialise() - Method in class uk.ac.bbk.dcs.automed.xml.wrappers.IQL2XQuery
 
initialiseCache() - Method in class uk.ac.ic.doc.automed.p2p.PeerCache
 
initialiseDB() - Method in class uk.ac.ic.doc.automed.tests.p2p.TestDBProcess
 
initialiseGui() - Method in class uk.ac.ic.doc.automed.editor.Gui
 
initialiseGui() - Method in class uk.ac.ic.doc.rodex.p2p.gui.GuiApplication
 
initialisePerformanceVars() - Method in class uk.ac.bbk.dcs.automed.qproc.evaluate.Evaluator
 
initialisePerfVars() - Static method in class uk.ac.bbk.dcs.automed.qproc.functions.internal.CallToWrapper
 
initialiseRepository(String) - Static method in class uk.ac.ic.doc.automed.editor.layout.RootLayout
 
initialiseRepository() - Method in class uk.ac.ic.doc.automed.p2p.directory.P2PDirectory
A method that indirectly causes the directory repository to be initialised
.
initialiseRepository() - Method in class uk.ac.ic.doc.automed.p2p.directory.P2PDirectoryRepository
 
initialiseRepository(String) - Static method in class uk.ac.ic.doc.automed.reps.Utility
Used by Utility.initRepository() to initialise a particulare data source
initialiseWrapper(AccessMethod, String) - Method in class uk.ac.bbk.dcs.automed.xml.wrappers.XMLWrapper
 
initializeMyGraph(ExpandedArrayList) - Method in class uk.ac.ic.doc.automed.editor.autolayout.AutoLayoutSchemaObject
 
initMessagingPeer() - Method in class uk.ac.ic.doc.automed.p2p.AutoMedPeer
Start the messaging clients in the background
initModel(AutoMedObject, boolean) - Method in class uk.ac.ic.doc.automed.p2p.tree.ModelObjectBuilder
An overloading method to initialise a new Model object.
initMulticastDaemon(RequestListener) - Method in class uk.ac.ic.doc.automed.p2p.AutoMedMessagingHelper
Initiate a multicast daemon
initOverlay(int) - Static method in class uk.ac.ic.doc.rodex.p2p.Peer
One overlay controller is shared among all peers
initOverlay(int, int) - Static method in class uk.ac.ic.doc.rodex.p2p.Peer
One overlay controller is shared among all peers
initPeer(String, PeerStateHandler) - Method in class uk.ac.ic.doc.automed.p2p.gui.PeerApplication
Intialise peer by creating a singleton object to be used throughout the application
This method is only invoked by LoginFrame and not by outside classes.
initPeerHello(Peer) - Method in class uk.ac.ic.doc.rodex.p2p.protocol.HEP
Send hello message to discover other peers.
initQueue() - Method in class uk.ac.ic.doc.automed.p2p.communication.UDPServer
Create a QueueWorker taking this instance as a job handler.
initRegistry() - Method in class uk.ac.ic.doc.automed.p2p.AutoMedPeer
This special method offers the flexibility of starting a P2PRegistry
object for and 'attaching' it to a peer.
initRepository() - Static method in class uk.ac.ic.doc.automed.p2p.AutoMedPeer
Initialise the AutoMedPeer repository based on the default configuration file
loaded at a previous stage
initRepository() - Static method in class uk.ac.ic.doc.automed.reps.Utility
This method reinitialises the peer's repository assuming that the default configuration
has been pre-loaded by DSRConfiguration in a previous step.
initRewriterEngine(List) - Method in class uk.ac.ic.doc.rodex.qproc.QueryRewriteProcessor
Create a new QueryWriter instance from a List of cached view Strings
initRewriterEngine(QueryAnalyser[]) - Method in class uk.ac.ic.doc.rodex.qproc.QueryRewriteProcessor
Create a new QueryWriter instance from an array of metadata objects
initRewriterEngine(ASG) - Method in class uk.ac.ic.doc.rodex.qproc.QueryRewriteProcessor
Create a new QueryWriter instance for range-based queries
initSchema(AutoMedObject) - Method in class uk.ac.ic.doc.automed.p2p.tree.ObjectBuilder
Create a new schema object
initSchema(AutoMedObject, Schema) - Method in class uk.ac.ic.doc.automed.p2p.tree.SchemaObjectBuilder
An overloading method to create a new Schema object
initSICP() - Method in class uk.ac.ic.doc.rodex.p2p.DirectoryServicePeer
Initialises SICP protocol
initSICP() - Method in class uk.ac.ic.doc.rodex.p2p.Peer
Initialises SICP protocol
input_stream - Variable in class uk.ac.bbk.dcs.automed.qproc.annotate.grammars.schemes.SchemesTokenManager
 
input_stream - Variable in class uk.ac.bbk.dcs.automed.qproc.annotate.grammars.simpleComp.SimpleCompTokenManager
 
input_stream - Variable in class uk.ac.bbk.dcs.automed.qproc.annotate.grammars.simpleCompAppend.SimpleCompAppendTokenManager
 
input_stream - Variable in class uk.ac.bbk.dcs.automed.qproc.annotate.grammars.simpleCompAppendMonus.SimpleCompAppendMonusTokenManager
 
input_stream - Variable in class uk.ac.bbk.dcs.automed.qproc.translators.xquery.XQuery2IQLTokenManager
 
InputDialog - Class in uk.ac.ic.doc.automed.p2p.gui
 
InputDialog(JFrame, PeerApplication, String, String[]) - Constructor for class uk.ac.ic.doc.automed.p2p.gui.InputDialog
 
InputDialog(JFrame, PeerApplication, String, Map, String[]) - Constructor for class uk.ac.ic.doc.automed.p2p.gui.InputDialog
 
inputStream - Variable in class uk.ac.bbk.dcs.automed.qproc.annotate.grammars.schemes.SimpleCharStream
 
inputStream - Variable in class uk.ac.bbk.dcs.automed.qproc.annotate.grammars.simpleComp.SimpleCharStream
 
inputStream - Variable in class uk.ac.bbk.dcs.automed.qproc.annotate.grammars.simpleCompAppend.SimpleCharStream
 
inputStream - Variable in class uk.ac.bbk.dcs.automed.qproc.annotate.grammars.simpleCompAppendMonus.SimpleCharStream
 
inputStream - Variable in class uk.ac.bbk.dcs.automed.qproc.translators.xquery.SimpleCharStream
 
inRange(int) - Method in class uk.ac.ic.doc.automed.reps.ConstructScheme
Determine if a certain number of instances of elements in a scheme matching this ConstructScheme are permissable.
insertDocument(Collection, Document, String) - Method in class uk.ac.bbk.dcs.automed.xml.wrappers.EXISTWrapper
 
insertIQL(ASG) - Method in class uk.ac.bbk.dcs.automed.hdmstore.HdmWrapper
Take the query and attempt to insert each of the values in the list into the database.
insertIQL(ASG) - Method in class uk.ac.bbk.dcs.automed.xml.wrappers.DOMWrapper
 
insertIQL(ASG) - Method in class uk.ac.ic.doc.automed.wrappers.AutoMedWrapper
Execute an IQL insert on the datasource.
insertIQL(ASG) - Method in class uk.ac.ic.doc.automed.wrappers.CSVWrapper
 
insertIQL(ASG) - Method in class uk.ac.ic.doc.automed.wrappers.UMLWrapper
 
insertIQL(ASG) - Method in class uk.ac.ic.doc.automed.wrappers.XMLSchemaWrapper
 
INSIDE - Static variable in class uk.ac.ic.doc.automed.editor.UserActionClass
 
Instance - Class in uk.ac.ic.doc.automed.matching
The Instance class represents an instance and its number of appearances.
Instance() - Constructor for class uk.ac.ic.doc.automed.matching.Instance
 
Instance(String, int) - Constructor for class uk.ac.ic.doc.automed.matching.Instance
Constructs an Instance object.
INSTANCE - Static variable in class uk.ac.ic.doc.automed.matching.relationships.Compatibility
The singleton instance of the Incompatibility class
INSTANCE - Static variable in class uk.ac.ic.doc.automed.matching.relationships.Disjointness
The singleton instance of the Disjointncess class
INSTANCE - Static variable in class uk.ac.ic.doc.automed.matching.relationships.Equivalence
The singleton instance of the Equivalence class
INSTANCE - Static variable in class uk.ac.ic.doc.automed.matching.relationships.Incompatibility
The singleton instance of the Incompatibility class
INSTANCE - Static variable in class uk.ac.ic.doc.automed.matching.relationships.Overlapness
The singleton instance of the Overlapness class
INSTANCE - Static variable in class uk.ac.ic.doc.automed.matching.relationships.Subset
 
INSTANCE - Static variable in class uk.ac.ic.doc.automed.matching.relationships.Superset
 
INT_DIVIDE - Static variable in interface uk.ac.bbk.dcs.automed.qproc.translators.xquery.XQuery2IQLConstants
 
INTEGER - Static variable in class uk.ac.ic.doc.automed.wrappers.AutoMedQuery
Token to represent the AutoMedWrapper.INTEGER atomic type
INTEGER - Static variable in class uk.ac.ic.doc.automed.wrappers.AutoMedType
Type to represent a twos-complement integer atomic type
INTEGER_TOKEN - Static variable in class uk.ac.ic.doc.automed.wrappers.AutoMedQuery
 
IntegratedSchemaEvolution - Class in uk.ac.bbk.dcs.automed.evolution2.schemaEvolution
 
IntegratedSchemaEvolution(boolean, Schema, Schema) - Constructor for class uk.ac.bbk.dcs.automed.evolution2.schemaEvolution.IntegratedSchemaEvolution
 
Integrator - Class in uk.ac.ic.doc.automed.matching
The class that represents the Integrator component in the schema matching architecture.
Integrator() - Constructor for class uk.ac.ic.doc.automed.matching.Integrator
 
IntegratorException - Exception in uk.ac.ic.doc.automed.matching
 
IntegratorException(String) - Constructor for exception uk.ac.ic.doc.automed.matching.IntegratorException
 
IntegratorException() - Constructor for exception uk.ac.ic.doc.automed.matching.IntegratorException
 
IntegratorException(String, Throwable) - Constructor for exception uk.ac.ic.doc.automed.matching.IntegratorException
 
IntegratorException(Throwable) - Constructor for exception uk.ac.ic.doc.automed.matching.IntegratorException
 
IntegrityException - Exception in uk.ac.ic.doc.automed
An attempt has be made to alter the repository (or data structure representing it) in a way that would make it inconsistent.
IntegrityException(String, String, int, int) - Constructor for exception uk.ac.ic.doc.automed.IntegrityException
Creates an IntegrityException, recording details of what operation was being attempted
IntegrityException(String) - Constructor for exception uk.ac.ic.doc.automed.IntegrityException
A simpler constructor for convenience
IntegrityException(String, String, int, int, int) - Constructor for exception uk.ac.ic.doc.automed.IntegrityException
Creates an IntegrityException, recording details of what operation was being attempted
Intersect - Class in uk.ac.bbk.dcs.automed.qproc.functions.collections
 
Intersect() - Constructor for class uk.ac.bbk.dcs.automed.qproc.functions.collections.Intersect
 
intersectionByName(Schema) - Method in class uk.ac.ic.doc.automed.reps.Schema
Return an SchemaObject array containing the intersection by name between this schema (s1) and the schema passed as a parameter (s2).
intersectLine(Rectangle, Polygon, int, int, int, int) - Static method in class uk.ac.ic.doc.automed.editor.DrawVertex
Return the Point where a line intersects a Polygon
IntToken - Static variable in class uk.ac.bbk.dcs.automed.qproc.iql.QSym
 
intType - Static variable in class uk.ac.bbk.dcs.automed.qproc.iql.Cell
 
intValue() - Method in class uk.ac.ic.doc.automed.wrappers.AutoMedInteger
Return the value of this AutoMedInteger as an int
InvalidElementException - Exception in uk.ac.ic.doc.automed.matching
 
InvalidElementException(String) - Constructor for exception uk.ac.ic.doc.automed.matching.InvalidElementException
 
InvalidElementException() - Constructor for exception uk.ac.ic.doc.automed.matching.InvalidElementException
 
InvalidElementException(String, Throwable) - Constructor for exception uk.ac.ic.doc.automed.matching.InvalidElementException
 
InverseRulesAlgorithm - Class in uk.ac.bbk.dcs.automed.qproc.reformulate
Implements Inverse Rules algorithm for LAV and BAV query processing as described in the following paper:-
invertRule(Map, int) - Static method in class uk.ac.bbk.dcs.automed.qproc.reformulate.InverseRulesAlgorithm
Takes a viewMap created by AtomicViewMap class and inverts the rules based on the map contents.
invertRule(ViewKey, Cell, int) - Static method in class uk.ac.bbk.dcs.automed.qproc.reformulate.InverseRulesAlgorithm
Inverts a rule.
IQL2XQuery - Class in uk.ac.bbk.dcs.automed.xml.wrappers
 
IQL2XQuery(NXDBWrapper, IQL2XQuery, boolean) - Constructor for class uk.ac.bbk.dcs.automed.xml.wrappers.IQL2XQuery
 
IQL_TRUE_CONSTRAINT - Static variable in class uk.ac.ic.doc.automed.reps.Transformation
Constraint that evaluates to true
IQL_UNION - Static variable in class uk.ac.ic.doc.rodex.qproc.Util
IQL union operator
iqlArea - Variable in class uk.ac.ic.doc.automed.editor.IQLTool
 
iqlEvaluate(String) - Static method in class uk.ac.bbk.dcs.automed.dataWarehousing.util.Tools4DW
 
iqlEvaluate(Cell) - Static method in class uk.ac.bbk.dcs.automed.dataWarehousing.util.Tools4DW
 
IQLEvaluator4DW - Class in uk.ac.bbk.dcs.automed.dataWarehousing.util
 
IQLEvaluator4DW() - Constructor for class uk.ac.bbk.dcs.automed.dataWarehousing.util.IQLEvaluator4DW
 
IQLEvaluator4DW(Schema) - Constructor for class uk.ac.bbk.dcs.automed.dataWarehousing.util.IQLEvaluator4DW
 
IQLEvaluator4DW(String[]) - Constructor for class uk.ac.bbk.dcs.automed.dataWarehousing.util.IQLEvaluator4DW
 
IQLEvaluator4DW(Schema[]) - Constructor for class uk.ac.bbk.dcs.automed.dataWarehousing.util.IQLEvaluator4DW
 
IQLEvaluator4DW(Schema[], Schema) - Constructor for class uk.ac.bbk.dcs.automed.dataWarehousing.util.IQLEvaluator4DW
 
IQLException - Exception in uk.ac.bbk.dcs.automed.qproc.iql
IQLException
IQLException(String) - Constructor for exception uk.ac.bbk.dcs.automed.qproc.iql.IQLException
Creates an IQLException when there has been no Exception that caused the error to discovered.
IQLException(String, Exception) - Constructor for exception uk.ac.bbk.dcs.automed.qproc.iql.IQLException
Creates an IQLException when it is acting as a wrapper for other Exceptions.
IQLfromResult(AutoMedResult) - Method in class uk.ac.bbk.dcs.automed.wrappers.SQLTranslator
 
IQLfromResult(AutoMedResult) - Method in class uk.ac.bbk.dcs.automed.wrappers.Translator
 
IQLFunction() - Method in class uk.ac.bbk.dcs.automed.qproc.translators.xquery.XQuery2IQL
 
IQLTool - Class in uk.ac.ic.doc.automed.editor
An IQLTool instance provides a window in which a user may execute IQL queries on a particular schema.
IQLTool(Schema) - Constructor for class uk.ac.ic.doc.automed.editor.IQLTool
 
IQLTranslator - Class in uk.ac.bbk.dcs.automed.wrappers
Class Task Description
IQLTranslator() - Constructor for class uk.ac.bbk.dcs.automed.wrappers.IQLTranslator
 
IQLUtility - Class in uk.ac.bbk.dcs.automed.qproc.iql
Provides a number of static methods that simplify IQL expressions.
IQLUtility() - Constructor for class uk.ac.bbk.dcs.automed.qproc.iql.IQLUtility
 
IQueryAggregator - Interface in uk.ac.ic.doc.automed.qproc
IQueryGetter.java
IQueryCache - Interface in uk.ac.ic.doc.automed.qproc.cache
IQueryCache.java A public interface for query cache.
IQueryMediator - Interface in uk.ac.ic.doc.automed.qproc
IQueryMediator.java

is$V() - Method in class uk.ac.bbk.dcs.automed.dataWarehousing.dlt.Lineage
 
is$Vc() - Method in class uk.ac.bbk.dcs.automed.dataWarehousing.dlt.Lineage
 
is$VcTuple() - Method in class uk.ac.bbk.dcs.automed.dataWarehousing.dlt.Lineage
 
is$VTuple() - Method in class uk.ac.bbk.dcs.automed.dataWarehousing.dlt.Lineage
 
IS1invIS2inv - Class in uk.ac.bbk.dcs.automed.xml.experiments.subclass.set1
Class Task Description
IS1invIS2inv() - Constructor for class uk.ac.bbk.dcs.automed.xml.experiments.subclass.set1.IS1invIS2inv
 
IS1IS1super - Class in uk.ac.bbk.dcs.automed.xml.experiments.subclass.set1
Class Task Description
IS1IS1super() - Constructor for class uk.ac.bbk.dcs.automed.xml.experiments.subclass.set1.IS1IS1super
 
IS1IS2 - Class in uk.ac.bbk.dcs.automed.xml.experiments.subclass.set1
Class Task Description
IS1IS2() - Constructor for class uk.ac.bbk.dcs.automed.xml.experiments.subclass.set1.IS1IS2
 
IS1IS2skolem1 - Class in uk.ac.bbk.dcs.automed.xml.experiments.subclassANDskolem
Class Task Description
IS1IS2skolem1() - Constructor for class uk.ac.bbk.dcs.automed.xml.experiments.subclassANDskolem.IS1IS2skolem1
 
IS1IS2skolem2 - Class in uk.ac.bbk.dcs.automed.xml.experiments.subclassANDskolem
Class Task Description
IS1IS2skolem2() - Constructor for class uk.ac.bbk.dcs.automed.xml.experiments.subclassANDskolem.IS1IS2skolem2
 
isAction(int, int) - Static method in class uk.ac.ic.doc.automed.qproc.cache.CacheTK
Check if a given real-time cache action (int-type) includes a pre-configured action
isAction(int, int[]) - Static method in class uk.ac.ic.doc.automed.qproc.cache.CacheTK
Check if a given real-time action is either one of the given events
isAddTransformation(Transformation, Schema) - Static method in class uk.ac.bbk.dcs.automed.evolution2.EvolutionUtility
 
isAdjacent(Node) - Method in class uk.ac.ic.doc.automed.reps.Node
 
isAEndCell(Cell) - Static method in class uk.ac.bbk.dcs.automed.dataWarehousing.util.Tools4DW
 
isAggregateQuery() - Method in class uk.ac.bbk.dcs.automed.wrappers.IQLTranslator
 
isANotMemberASG(Cell) - Static method in class uk.ac.bbk.dcs.automed.dataWarehousing.util.Tools4DW
 
isApply() - Method in class uk.ac.bbk.dcs.automed.qproc.iql.Cell
Returns true if tag is apply
isAtomic() - Method in class uk.ac.ic.doc.automed.matching.SchemaElement
Returns true if the schema element is "atomic", false otherwise.
isAttribute(String) - Static method in class uk.ac.bbk.dcs.automed.xml.utilities.UIDUtility
 
isBaseType(String) - Static method in class uk.ac.ic.doc.automed.reps.AutoMedToXSDOM
Checks whether the type is one of the two base types defined for the XML Schema model
isBConsConstructor() - Method in class uk.ac.bbk.dcs.automed.qproc.iql.Cell
Returns true if tag is "BCons"
isBNilConstructor() - Method in class uk.ac.bbk.dcs.automed.qproc.iql.Cell
Returns true if tag is "BNil"
isCDataNestListUID(String) - Static method in class uk.ac.bbk.dcs.automed.xml.utilities.UIDUtility
 
isCDataNode(Node) - Static method in class uk.ac.bbk.dcs.automed.xml.utilities.XMLUtilities
Returns true if node n is a CData node, false otherwise
isCDataUID(String) - Static method in class uk.ac.bbk.dcs.automed.xml.utilities.UIDUtility
 
isCellEditable(int, int) - Method in class uk.ac.ic.doc.automed.p2p.gui.PeerTableModel
 
isChangedRefTML() - Method in class uk.ac.ic.doc.automed.tml.TML
 
isCollectionConstructor() - Method in class uk.ac.bbk.dcs.automed.qproc.iql.Cell
Returns true if tag is "Cons", "BCons" or "SCons"
isCollectionNilConstructor() - Method in class uk.ac.bbk.dcs.automed.qproc.iql.Cell
Returns true if tag is "Nil"
isCollectionQuery() - Method in class uk.ac.bbk.dcs.automed.wrappers.IQLTranslator
 
isComparableTo(QueryFunction) - Method in class uk.ac.ic.doc.rodex.qproc.QueryFunction
Check if two functions are comparable, i.e.:
the associated variables of the functions are mappable
isComplexTuple(Cell) - Static method in class uk.ac.bbk.dcs.automed.dataWarehousing.util.Tools4DW
 
isCompWithOnlyGen(String) - Static method in class uk.ac.bbk.dcs.automed.dataWarehousing.util.Tools4DW
 
isCompWithOnlyGen(Cell) - Static method in class uk.ac.bbk.dcs.automed.dataWarehousing.util.Tools4DW
 
isConsConstructor() - Method in class uk.ac.bbk.dcs.automed.qproc.iql.Cell
 
isConsistentWith(QueryFunction) - Method in class uk.ac.ic.doc.rodex.qproc.QueryFunction
Check if this functions is consistent with another function.
isConsistentWith(QueryVariable) - Method in class uk.ac.ic.doc.rodex.qproc.QueryVariable
Two QueryVariable objects are consistent if their bound functions (if any)
are mutually consistent.
isConstant() - Method in class uk.ac.bbk.dcs.automed.qproc.iql.Cell
Returns true if tag is constant
isConstant() - Method in class uk.ac.ic.doc.rodex.qproc.QueryVariable
Test if this variable is also a query constant, i.e.
isConstructor(String) - Method in class uk.ac.bbk.dcs.automed.qproc.iql.Cell
 
isConstructor() - Method in class uk.ac.bbk.dcs.automed.qproc.iql.Cell
Returns true if tag is constructor
isConstructorOrSysConstructor() - Method in class uk.ac.bbk.dcs.automed.qproc.iql.Cell
Returns true if tag is constructor or system constructor
isConstructRoot(int) - Static method in class uk.ac.ic.doc.automed.MDR
 
isConstructSchemeKey(int, int) - Static method in class uk.ac.ic.doc.automed.MDR
 
isContainConstant(Cell) - Static method in class uk.ac.bbk.dcs.automed.dataWarehousing.util.Tools4DW
 
isContainVarable(Cell) - Static method in class uk.ac.bbk.dcs.automed.dataWarehousing.util.Tools4DW
 
isContractTransformation(Transformation, Schema) - Static method in class uk.ac.bbk.dcs.automed.evolution2.EvolutionUtility
 
isCyclic() - Method in class uk.ac.ic.doc.automed.reps.Network
 
isDAG(ASG) - Static method in class uk.ac.bbk.dcs.automed.qproc.iql.ASG
 
isDAG(Cell) - Static method in class uk.ac.bbk.dcs.automed.qproc.iql.ASG
 
isDataEvolution - Variable in class uk.ac.bbk.dcs.automed.evolution1.Evolution
 
isDataSource() - Method in class uk.ac.ic.doc.automed.reps.Schema
Deprecated. use Schema.getType() instead. Determines whether or not the schema represents an external data source.
isDateTime() - Method in class uk.ac.bbk.dcs.automed.qproc.iql.Cell
 
isDeleteTransformation(Transformation, Schema) - Static method in class uk.ac.bbk.dcs.automed.evolution2.EvolutionUtility
 
isDependent() - Method in class uk.ac.ic.doc.automed.editor.autolayout.AutoLayoutSchemaObject
 
isDependentOn(Transformation) - Method in class uk.ac.ic.doc.automed.reps.Transformation
Determines whether or not the transformation is dependent on another transformation.
isDirected() - Method in class uk.ac.ic.doc.automed.reps.Network
 
isDisjointWith(MiniConQueryRewriter.MiniConDescription) - Method in class uk.ac.ic.doc.rodex.qproc.MiniConQueryRewriter.MiniConDescription
Check if this MCD is disjoint from another MCD, i.e.
isElementNode(Node) - Static method in class uk.ac.bbk.dcs.automed.xml.utilities.XMLUtilities
Returns true if node n is an element node, false otherwise
isEmpty() - Method in class uk.ac.ic.doc.automed.editor.autolayout.Queue
 
isEmpty() - Method in class uk.ac.ic.doc.automed.qproc.cache.DefaultQueryCache
 
isEndFragment(byte[]) - Static method in class uk.ac.ic.doc.automed.p2p.util.Util
Check if a trunk of bytes form the end-of-fragmentation message.
isExtDB() - Method in class uk.ac.ic.doc.automed.reps.Schema
Deprecated. use Schema.getType() instead. Determines whether or not the schema represents an extentional database.
isExtendontractTransformation(Transformation, Schema) - Static method in class uk.ac.bbk.dcs.automed.evolution2.EvolutionUtility
 
isExtendTransformation(Transformation, Schema) - Static method in class uk.ac.bbk.dcs.automed.evolution2.EvolutionUtility
 
isExtensionListInDescription() - Method in class uk.ac.ic.doc.automed.wrappers.XMLFileFilter
Returns whether the extension list (.jpg, .gif, etc) should show up in the human readable description.
isExtSchema() - Method in class uk.ac.ic.doc.automed.reps.Schema
Deprecated. use Schema.getType() instead. Determines whether or not the schema is an extentional schema.
isFeatureInUse(int) - Method in class uk.ac.ic.doc.automed.wrappers.AutoMedWrapperFactory
Test if a certain group of features is being implemented in the representation of the datasource model in the AutoMed repository
isFloat() - Method in class uk.ac.bbk.dcs.automed.qproc.iql.Cell
 
isFunction() - Method in class uk.ac.bbk.dcs.automed.qproc.iql.Cell
Returns true if tag is function
isGlobal() - Method in class uk.ac.ic.doc.automed.p2p.tree.Reference
 
isHeadVar(QueryVariable) - Method in class uk.ac.ic.doc.rodex.qproc.QueryAnalyser
 
isHidden(Positionable) - Method in class uk.ac.ic.doc.automed.editor.Gui
Return true if a particular Positionable is hidden at present, and hence should not be displayed by the GUI
isHidden(Drawable) - Method in class uk.ac.ic.doc.automed.editor.Gui
Return true if a particular Drawable is hidden, meaning that either the Positionable on which it is based is hidden, or one of the Positionables it depends on is hidden
isHide() - Method in class uk.ac.ic.doc.automed.editor.autolayout.AutoLayoutPositionable
Method return true when object is hidden.
isIdentical(Cell, Cell) - Static method in class uk.ac.bbk.dcs.automed.dataWarehousing.util.Tools4DW
 
isIdentTransformation(Transformation, Schema) - Static method in class uk.ac.bbk.dcs.automed.evolution2.EvolutionUtility
 
isInteger() - Method in class uk.ac.bbk.dcs.automed.qproc.iql.Cell
 
isJoinedNetwork() - Method in class uk.ac.ic.doc.automed.p2p.AutoMedPeer
 
isKey() - Method in class uk.ac.ic.doc.automed.reps.ConstructScheme
Returns whether of not the ConstructScheme is part the key of the whole scheme.
isKey() - Method in class uk.ac.ic.doc.automed.reps.Scheme
Determine if this Scheme is part of the set of Schemes that uniquely identify the parent SchemaObject in a particular Schema
isKey - Static variable in class uk.ac.ic.doc.automed.reps.Syntax.Token
 
isLambda() - Method in class uk.ac.bbk.dcs.automed.qproc.iql.Cell
Returns true if tag is lambda
isLeaf() - Method in class uk.ac.bbk.dcs.automed.graph.TreeNode
 
isLeaf() - Method in class uk.ac.ic.doc.automed.reps.Node
True if (and only if) this node belongs to a directed network and this is a leaf node.
isLegalPeerName(String) - Static method in class uk.ac.ic.doc.automed.p2p.protocol.P2PProtocol
 
isLegalQuery(String) - Static method in class uk.ac.ic.doc.automed.p2p.protocol.P2PProtocol
 
isLegalSchemaName(String) - Static method in class uk.ac.ic.doc.automed.p2p.protocol.P2PProtocol
 
isLinkUp() - Method in class uk.ac.ic.doc.rodex.p2p.protocol.SICP
Test whether or not the peer's link to the network is up
isLiteral() - Method in class uk.ac.ic.doc.automed.wrappers.AutoMedType
Check if this is a literal type
isLiteral() - Method in class uk.ac.ic.doc.rodex.qproc.QueryFunction
 
isMapedObject(String) - Method in class uk.ac.bbk.dcs.automed.dataWarehousing.util.IQLEvaluator4DW
 
isMappableTo(QuerySubGoal) - Method in class uk.ac.ic.doc.rodex.qproc.QuerySubGoal
Test for containment mapping to another subgoal.
isMappableTo(QueryVariable) - Method in class uk.ac.ic.doc.rodex.qproc.QueryVariable
Two QueryVariable objects are mappable if they are bound to the
same field in a query scheme (e.g.
isMappableToHeadVar(QueryVariable) - Method in class uk.ac.ic.doc.rodex.qproc.QueryAnalyser
Check that a query variable object is truly a head var, i.e.
isModelExist(String) - Method in class uk.ac.ic.doc.automed.p2p.directory.P2PDirectoryRepository
Check if a model exists in the repository
isMutuallyConsistentWith(QueryFunction) - Method in class uk.ac.ic.doc.rodex.qproc.QueryFunction
Check if two QueryFunction objects are mutually consistent
Basically, this checks that this function is consistent with another function
(see QueryFunction.isConsistentWith(QueryFunction qf)) and the reverse.
isNamespaceAware() - Method in class uk.ac.ic.doc.automed.xml.XMLReader
 
isNaN() - Method in class uk.ac.ic.doc.automed.matching.BidirectionalDegree
Returns true if one of the similarity degrees is not a number.
isNilConstructor() - Method in class uk.ac.bbk.dcs.automed.qproc.iql.Cell
Returns true if tag is "Nil"
isNode() - Method in class uk.ac.bbk.dcs.automed.hdmstore.Span
Is this Span a node?
isNull() - Method in class uk.ac.ic.doc.automed.wrappers.AutoMedType
Is this type a null value?
isNum() - Method in class uk.ac.bbk.dcs.automed.qproc.iql.Cell
Deprecated. use isNumberType() instead
isNumberType() - Method in class uk.ac.bbk.dcs.automed.qproc.iql.Cell
 
isNumeric() - Method in class uk.ac.ic.doc.automed.wrappers.AutoMedType
Check if this is a numeric type
isNumeric() - Method in class uk.ac.ic.doc.rodex.qproc.QueryFunction
 
isOK() - Method in class uk.ac.ic.doc.automed.p2p.gui.InputDialog
 
isOnCurrentSchema() - Method in class uk.ac.ic.doc.automed.editor.autolayout.AutoLayoutSchemaObject
Detect whether the SchemaObject object connected to this AutoLayout* is present on the current Schema.
isPathway() - Method in class uk.ac.ic.doc.automed.p2p.protocol.Request
 
isPathway() - Method in class uk.ac.ic.doc.automed.p2p.protocol.Request.Pathway
 
isPathwayToSource() - Method in class uk.ac.ic.doc.automed.p2p.protocol.Request
 
isPathwayToSource() - Method in class uk.ac.ic.doc.automed.p2p.protocol.Request.PathwayToSource
 
isPCDataNestListUID(String) - Static method in class uk.ac.bbk.dcs.automed.xml.utilities.UIDUtility
 
isPCDataNode(Node) - Static method in class uk.ac.bbk.dcs.automed.xml.utilities.XMLUtilities
Returns true if node n is a PCData node, false otherwise
isPCDataUID(String) - Static method in class uk.ac.bbk.dcs.automed.xml.utilities.UIDUtility
 
isPort() - Method in class uk.ac.ic.doc.automed.p2p.protocol.Request
 
isPort() - Method in class uk.ac.ic.doc.automed.p2p.protocol.Request.Port
 
isPrimaryKeyForeignKey(Schema, SchemaObject) - Static method in class uk.ac.ic.doc.automed.reps.Utility
Returns whether a foreign-key field SchemaObject is also a primary-key.
isQuery() - Method in class uk.ac.ic.doc.automed.p2p.protocol.Request
 
isQuery() - Method in class uk.ac.ic.doc.automed.p2p.protocol.Request.Query
 
isRangeVoidAny(String, Schema, Schema) - Static method in class uk.ac.bbk.dcs.automed.evolution.schemaModelEvolution.ExtensionalSchemaEvolution
 
isReady - Variable in class uk.ac.ic.doc.automed.p2p.communication.AbstractClient
 
isReady - Variable in class uk.ac.ic.doc.automed.p2p.communication.AbstractServer
 
isRedundant(Transformation) - Method in class uk.ac.ic.doc.automed.reps.Transformation
Determines whether or not the transformation and the given tran are redundant, e.g., two transformations are redundant if they transform the same schema object and their action is the opposite of the other (add/delete, extend/contract, etc.).
isRegister() - Method in class uk.ac.ic.doc.automed.p2p.protocol.Request
 
isRegister() - Method in class uk.ac.ic.doc.automed.p2p.protocol.Request.Register
 
isRelated(SchemaObject, SchemaObject[], SemanticRelationship, boolean) - Method in class uk.ac.ic.doc.automed.matching.Integrator
Returns a SchemaElementPair array with pairs defined by the specified schema object and the schema object array.
isRemoteLogging() - Static method in class uk.ac.ic.doc.automed.util.Logger
Check if remote logging is set
isRemove() - Method in class uk.ac.ic.doc.automed.p2p.protocol.Request
 
isRemove() - Method in class uk.ac.ic.doc.automed.p2p.protocol.Request.Remove
 
isRenameTransformation(Transformation, Schema) - Static method in class uk.ac.bbk.dcs.automed.evolution2.EvolutionUtility
 
isRepair - Variable in class uk.ac.bbk.dcs.automed.evolution.schemaModelEvolution.SMEvolution
 
isRepair - Variable in class uk.ac.bbk.dcs.automed.evolution1.Evolution
 
isRepair - Variable in class uk.ac.bbk.dcs.automed.evolution2.schemaEvolution.SchemaEvolution
 
isRoot() - Method in class uk.ac.bbk.dcs.automed.graph.TreeNode
 
isRoot() - Method in class uk.ac.ic.doc.automed.editor.autolayout.AutoLayoutTreeObject
Return true if object label = "root$1"
isRoot() - Method in class uk.ac.ic.doc.automed.reps.Construct
Returns whether or not the construct is a construct of its underlying model.
isRoot() - Method in class uk.ac.ic.doc.automed.reps.Node
True if (and only if) this node belongs to a directed network and this is a root node.
isRoot - Static variable in class uk.ac.ic.doc.automed.reps.Syntax.Token
 
isRunning() - Method in class uk.ac.ic.doc.automed.p2p.directory.FlushTimeHelper
 
isRunning() - Method in class uk.ac.ic.doc.automed.p2p.directory.HelloTimeHelper
 
isRunning() - Method in class uk.ac.ic.doc.automed.p2p.directory.HoldTimeHelper
 
isSchema() - Method in class uk.ac.ic.doc.automed.p2p.protocol.Request
 
isSchema() - Method in class uk.ac.ic.doc.automed.p2p.protocol.Request.Schema
 
isSchemaEvolution - Variable in class uk.ac.bbk.dcs.automed.evolution1.Evolution
 
isSchemaInfoCached(String) - Method in class uk.ac.ic.doc.automed.p2p.PeerCache
 
isScheme() - Method in class uk.ac.bbk.dcs.automed.qproc.iql.Cell
Returns true if tag is scheme
isSConsConstructor() - Method in class uk.ac.bbk.dcs.automed.qproc.iql.Cell
Returns true if tag is "SCons"
isShared() - Method in class uk.ac.ic.doc.rodex.qproc.QueryVariable
Test to see if this is a shared variable, i.e.
isSIQL() - Method in class uk.ac.bbk.dcs.automed.dataWarehousing.dlt.TransfStep
 
isSNilConstructor() - Method in class uk.ac.bbk.dcs.automed.qproc.iql.Cell
Returns true if tag is "SNil"
isSpecial() - Method in class uk.ac.bbk.dcs.automed.qproc.iql.Cell
Returns true if tag is special
isSpecial(String) - Method in class uk.ac.bbk.dcs.automed.qproc.iql.Cell
 
isStopped() - Method in class uk.ac.ic.doc.automed.util.thread.AsynchThread
Check if a thread is started or not
isStopped() - Method in class uk.ac.ic.doc.automed.util.thread.TimedThread
Check if a thread is started or not
isString() - Method in class uk.ac.bbk.dcs.automed.qproc.iql.Cell
 
isString() - Method in class uk.ac.ic.doc.automed.reps.Scheme
Determine if this Scheme defines a String, rather than a reference to some other SchemaObject
isStronger(SemanticRelationship) - Method in class uk.ac.ic.doc.automed.matching.relationships.SemanticRelationship
Returns true if this object's relationship is stronger that the specified object's relationship.
isSysConstructor(String) - Method in class uk.ac.bbk.dcs.automed.qproc.iql.Cell
 
isSysConstructor() - Method in class uk.ac.bbk.dcs.automed.qproc.iql.Cell
Returns true if tag is system constructor
isSysVariable() - Method in class uk.ac.bbk.dcs.automed.qproc.iql.Cell
Returns true if tag is sysvariable
isTableExist(String) - Method in class uk.ac.ic.doc.automed.util.db.DBAccess
Checks whether or not a table exists in the database
isTableExist(String) - Method in class uk.ac.ic.doc.automed.util.db.DBEmbedded
Return a result set of table names for manipulation
isTableExist(String) - Method in class uk.ac.ic.doc.automed.util.db.DBPostgres
Return a result set of table names for manipulation
isTextNestListUID(String) - Static method in class uk.ac.bbk.dcs.automed.xml.utilities.UIDUtility
 
isTextNode(Node) - Static method in class uk.ac.bbk.dcs.automed.xml.utilities.XMLUtilities
Returns true if node n is a text node, false otherwise
isTextUID(String) - Static method in class uk.ac.bbk.dcs.automed.xml.utilities.UIDUtility
 
isTokenTypeSupressed(int) - Method in class uk.ac.ic.doc.automed.xml.XMLReader
 
isTree() - Method in class uk.ac.bbk.dcs.automed.xml.xmldssGraph.XMLDSSGraph
 
isTree() - Method in class uk.ac.ic.doc.automed.reps.Network
 
isUnknown() - Method in class uk.ac.ic.doc.automed.p2p.protocol.Request
 
isValidating() - Method in class uk.ac.ic.doc.automed.xml.XMLReader
 
isValidChild(TreeNode) - Method in class uk.ac.ic.doc.automed.p2p.tree.AutoMedObject
 
isValidChild(TreeNode) - Method in class uk.ac.ic.doc.automed.p2p.tree.CollectionSet
 
isValidChild(TreeNode) - Method in class uk.ac.ic.doc.automed.p2p.tree.Field
 
isValidChild(TreeNode) - Method in class uk.ac.ic.doc.automed.p2p.tree.MainObjectClasses
 
isValidChild(TreeNode) - Method in class uk.ac.ic.doc.automed.p2p.tree.ObjectCollection
 
isValidChild(TreeNode) - Method in class uk.ac.ic.doc.automed.p2p.tree.Reference
 
isValidChild(TreeNode) - Method in class uk.ac.ic.doc.automed.p2p.tree.Root
 
isValidChild(TreeNode) - Method in class uk.ac.ic.doc.automed.p2p.tree.TreeNode
 
isValidChild(TreeNode) - Method in class uk.ac.ic.doc.automed.p2p.tree.Value
 
isValidChild(TreeNode) - Method in class uk.ac.ic.doc.automed.p2p.tree.ValueList
 
isVariable() - Method in class uk.ac.bbk.dcs.automed.qproc.iql.Cell
Returns true if tag is variable
isVarOrSysVar() - Method in class uk.ac.bbk.dcs.automed.qproc.iql.Cell
Returns true if tag is variable or sysvariable
isVirtualConstruct() - Method in class uk.ac.bbk.dcs.automed.dataWarehousing.dlt.Lineage
 
isVirtualDate() - Method in class uk.ac.bbk.dcs.automed.dataWarehousing.dlt.Lineage
 
isVoid() - Method in class uk.ac.bbk.dcs.automed.dataWarehousing.dlt.Lineage
 
isvResult() - Method in class uk.ac.bbk.dcs.automed.dataWarehousing.dlt.TransfStep
 
isWellformed() - Method in class uk.ac.ic.doc.automed.reps.Pathway
 
isYattaModelandSource(Object[]) - Static method in class uk.ac.ic.doc.automed.editor.PatternWritingTool
 
ITEM - Static variable in class uk.ac.ic.doc.automed.p2p.protocol.P2PConstants
 
ITEM_COLLECTION - Static variable in class uk.ac.ic.doc.automed.p2p.protocol.P2PConstants
 
itemStateChanged(ItemEvent) - Method in class uk.ac.ic.doc.automed.editor.MatchingTool
 
iteration - Variable in class uk.ac.ic.doc.automed.editor.autolayout.AutoLayoutERObject
 
iterator() - Method in class uk.ac.bbk.dcs.automed.qproc.iql.ASGCollection
 
iterator() - Method in class uk.ac.ic.doc.automed.util.db.QueryCacheSQLAdapter
Return an iterator of the entry set
iterator() - Method in class uk.ac.ic.doc.automed.util.persist.PersistentDB
Return an iterator of the entry set
iterator() - Method in interface uk.ac.ic.doc.automed.util.persist.PersistentHandler
Return an iterator of the entry set

J

JaccardAtomicExistenceModule - Class in uk.ac.ic.doc.automed.matching.modules.probability.binary
The module that compares the schema elements by examining if they have common instances
JaccardAtomicExistenceModule(SchemaElementPair[]) - Constructor for class uk.ac.ic.doc.automed.matching.modules.probability.binary.JaccardAtomicExistenceModule
 
JaccardExistenceModule - Class in uk.ac.ic.doc.automed.matching.modules.intervals
The module that compares the schema elements by examining if they have common instances
JaccardExistenceModule(SchemaElementPair[]) - Constructor for class uk.ac.ic.doc.automed.matching.modules.intervals.JaccardExistenceModule
 
JaccardExistenceModule - Class in uk.ac.ic.doc.automed.matching.modules.probability.binary
The module that compares the schema elements by examining if they have common instances
JaccardExistenceModule(SchemaElementPair[]) - Constructor for class uk.ac.ic.doc.automed.matching.modules.probability.binary.JaccardExistenceModule
 
JaccardExistenceModule - Class in uk.ac.ic.doc.automed.matching.modules.probability.senary
The module that compares the schema elements by examining if they have common instances
JaccardExistenceModule(SchemaElementPair[]) - Constructor for class uk.ac.ic.doc.automed.matching.modules.probability.senary.JaccardExistenceModule
 
JaccardNameModule - Class in uk.ac.ic.doc.automed.matching.modules.intervals
The module that compares the names of the schema elements
JaccardNameModule(SchemaElementPair[]) - Constructor for class uk.ac.ic.doc.automed.matching.modules.intervals.JaccardNameModule
 
JaccardNameModule - Class in uk.ac.ic.doc.automed.matching.modules.probability.binary
The module that compares the names of the schema elements
JaccardNameModule(SchemaElementPair[]) - Constructor for class uk.ac.ic.doc.automed.matching.modules.probability.binary.JaccardNameModule
 
JaccardNameModule - Class in uk.ac.ic.doc.automed.matching.modules.probability.senary
The module that compares the names of the schema elements
JaccardNameModule(SchemaElementPair[]) - Constructor for class uk.ac.ic.doc.automed.matching.modules.probability.senary.JaccardNameModule
 
JaroAtomicExistenceModule - Class in uk.ac.ic.doc.automed.matching.modules.probability.binary
The module that compares the schema elements by examining if they have common atomic instances
JaroAtomicExistenceModule(SchemaElementPair[]) - Constructor for class uk.ac.ic.doc.automed.matching.modules.probability.binary.JaroAtomicExistenceModule
 
JaroAtomicExistenceModule - Class in uk.ac.ic.doc.automed.matching.modules.probability.senary
The module that compares the schema elements by examining if they have common atomic instances
JaroAtomicExistenceModule(SchemaElementPair[]) - Constructor for class uk.ac.ic.doc.automed.matching.modules.probability.senary.JaroAtomicExistenceModule
 
JaroExistenceModule - Class in uk.ac.ic.doc.automed.matching.modules.intervals
The module that compares the schema elements by examining if they have common instances
JaroExistenceModule(SchemaElementPair[]) - Constructor for class uk.ac.ic.doc.automed.matching.modules.intervals.JaroExistenceModule
 
JaroExistenceModule - Class in uk.ac.ic.doc.automed.matching.modules.probability.binary
The module that compares the schema elements by examining if they have common instances
JaroExistenceModule(SchemaElementPair[]) - Constructor for class uk.ac.ic.doc.automed.matching.modules.probability.binary.JaroExistenceModule
 
JaroExistenceModule - Class in uk.ac.ic.doc.automed.matching.modules.probability.senary
The module that compares the schema elements by examining if they have common instances
JaroExistenceModule(SchemaElementPair[]) - Constructor for class uk.ac.ic.doc.automed.matching.modules.probability.senary.JaroExistenceModule
 
java - package java
 
java.awt - package java.awt
 
java.awt.geom - package java.awt.geom
 
java.lang - package java.lang
 
JDBCDriverException - Exception in uk.ac.ic.doc.automed.util.db
 
JDBCDriverException(String) - Constructor for exception uk.ac.ic.doc.automed.util.db.JDBCDriverException
Creates a new instance of JDBCDriverException
JDBCDriverException(String, Throwable) - Constructor for exception uk.ac.ic.doc.automed.util.db.JDBCDriverException
 
jHandler - Variable in class uk.ac.ic.doc.automed.p2p.communication.UDPServer
 
jj_nt - Variable in class uk.ac.bbk.dcs.automed.qproc.annotate.grammars.schemes.Schemes
 
jj_nt - Variable in class uk.ac.bbk.dcs.automed.qproc.annotate.grammars.simpleComp.SimpleComp
 
jj_nt - Variable in class uk.ac.bbk.dcs.automed.qproc.annotate.grammars.simpleCompAppend.SimpleCompAppend
 
jj_nt - Variable in class uk.ac.bbk.dcs.automed.qproc.annotate.grammars.simpleCompAppendMonus.SimpleCompAppendMonus
 
jj_nt - Variable in class uk.ac.bbk.dcs.automed.qproc.translators.xquery.XQuery2IQL
 
jjFillToken() - Method in class uk.ac.bbk.dcs.automed.qproc.annotate.grammars.schemes.SchemesTokenManager
 
jjFillToken() - Method in class uk.ac.bbk.dcs.automed.qproc.annotate.grammars.simpleComp.SimpleCompTokenManager
 
jjFillToken() - Method in class uk.ac.bbk.dcs.automed.qproc.annotate.grammars.simpleCompAppend.SimpleCompAppendTokenManager
 
jjFillToken() - Method in class uk.ac.bbk.dcs.automed.qproc.annotate.grammars.simpleCompAppendMonus.SimpleCompAppendMonusTokenManager
 
jjFillToken() - Method in class uk.ac.bbk.dcs.automed.qproc.translators.xquery.XQuery2IQLTokenManager
 
jjstrLiteralImages - Static variable in class uk.ac.bbk.dcs.automed.qproc.annotate.grammars.schemes.SchemesTokenManager
 
jjstrLiteralImages - Static variable in class uk.ac.bbk.dcs.automed.qproc.annotate.grammars.simpleComp.SimpleCompTokenManager
 
jjstrLiteralImages - Static variable in class uk.ac.bbk.dcs.automed.qproc.annotate.grammars.simpleCompAppend.SimpleCompAppendTokenManager
 
jjstrLiteralImages - Static variable in class uk.ac.bbk.dcs.automed.qproc.annotate.grammars.simpleCompAppendMonus.SimpleCompAppendMonusTokenManager
 
jjstrLiteralImages - Static variable in class uk.ac.bbk.dcs.automed.qproc.translators.xquery.XQuery2IQLTokenManager
 
Job - Class in uk.ac.ic.doc.automed.util.queue
 
Job(Object, Object, String) - Constructor for class uk.ac.ic.doc.automed.util.queue.Job
Creates a new instance of Job
JobHandler - Interface in uk.ac.ic.doc.automed.util.queue
 
join(AutoLayoutTreeObject) - Static method in class uk.ac.ic.doc.automed.editor.autolayout.AutoLayoutTreeObject
Joins children/siblings together, merging contours.
join() - Method in class uk.ac.ic.doc.rodex.qproc.QueryResultProducer
Perform the 'join' operation on the specified set of result objects.
joinASGs(List) - Static method in class uk.ac.ic.doc.rodex.qproc.ASGExplore
This method test creating a new ASG from unioning two ASGs dmle 26/1/2006
joinASGs(String[]) - Static method in class uk.ac.ic.doc.rodex.qproc.ASGExplore
An overloading method of ASGExplore.joinASGs(List asgObjs)
joinButton - Variable in class uk.ac.ic.doc.automed.p2p.gui.LoginFrame
 
joinGroup() - Method in class uk.ac.ic.doc.automed.p2p.communication.MulticastServer
Leaves multicast group
joinIQLResult(List) - Static method in class uk.ac.ic.doc.rodex.qproc.QueryRewriteProcessor
 
joinNetwork() - Method in class uk.ac.ic.doc.automed.p2p.gui.PeerApplication
 
joinOverlay(ID, String, String) - Method in class uk.ac.ic.doc.rodex.p2p.Peer
Initialise an instance of the overlay controller and start a DHT process for this peer
JSomClusterer - Class in uk.ac.ic.doc.automed.matching.modules.bidirectionalmap
 
JSomClusterer(int) - Constructor for class uk.ac.ic.doc.automed.matching.modules.bidirectionalmap.JSomClusterer
 
JSomClusterer(ElementVectorRepresentation[]) - Constructor for class uk.ac.ic.doc.automed.matching.modules.bidirectionalmap.JSomClusterer
 
JTreeTransform - Class in uk.ac.ic.doc.automed.xmlschema
 
JTreeTransform(Schema) - Constructor for class uk.ac.ic.doc.automed.xmlschema.JTreeTransform
Creates a new instance of JTreeTransform
justTableName - Static variable in class uk.ac.ic.doc.automed.wrappers.SQLWrapperFactory
 

K

KA_STATUS_OFF - Static variable in class uk.ac.ic.doc.automed.p2p.Constants
Keep alive status: -1 means remote is not responding
KA_STATUS_ON - Static variable in class uk.ac.ic.doc.automed.p2p.Constants
Keep alive status: 1 means remote is responding
KEEP_ALIVE - Static variable in class uk.ac.ic.doc.automed.p2p.protocol.P2PConstants
Context: keep alive (udp)
KeepAliveMessageHandler - Class in uk.ac.ic.doc.automed.p2p
 
KeepAliveMessageHandler(AutoMedPeer, boolean) - Constructor for class uk.ac.ic.doc.automed.p2p.KeepAliveMessageHandler
Creates a new instance of KeepAliveMessageHandler
keyName - Variable in class uk.ac.ic.doc.automed.editor.drawables.DrawRDBForeignKeyVertex
 
keyref - Variable in class uk.ac.ic.doc.automed.wrappers.xsdomobject.XSDOMObject
Any keyref there might be
keywords - Static variable in class uk.ac.ic.doc.automed.reps.Syntax.Token
 
kind - Variable in class uk.ac.bbk.dcs.automed.qproc.annotate.grammars.schemes.Token
An integer that describes the kind of this token.
kind - Variable in class uk.ac.bbk.dcs.automed.qproc.annotate.grammars.simpleComp.Token
An integer that describes the kind of this token.
kind - Variable in class uk.ac.bbk.dcs.automed.qproc.annotate.grammars.simpleCompAppend.Token
An integer that describes the kind of this token.
kind - Variable in class uk.ac.bbk.dcs.automed.qproc.annotate.grammars.simpleCompAppendMonus.Token
An integer that describes the kind of this token.
kind - Variable in class uk.ac.bbk.dcs.automed.qproc.translators.xquery.Token
An integer that describes the kind of this token.

L

l() - Method in class uk.ac.bbk.dcs.automed.qproc.iql.Cell
Returns a reference to the left child of the Cell
lambda - Static variable in class uk.ac.bbk.dcs.automed.qproc.iql.Cell
 
Lambda - Static variable in class uk.ac.bbk.dcs.automed.qproc.iql.FSym
 
Lambda - Static variable in class uk.ac.bbk.dcs.automed.qproc.iql.QSym
 
lambdaCalls - Variable in class uk.ac.bbk.dcs.automed.qproc.evaluate.Evaluator
 
lambdaTimeSpent - Variable in class uk.ac.bbk.dcs.automed.qproc.evaluate.Evaluator
 
LANG_STANDARD - Static variable in class uk.ac.ic.doc.rodex.qproc.QueryMediator
 
LANG_XQUERY - Static variable in class uk.ac.ic.doc.rodex.qproc.QueryMediator
 
LArrow - Static variable in class uk.ac.bbk.dcs.automed.qproc.iql.QSym
 
LAST - Static variable in class uk.ac.ic.doc.automed.editor.MatchingTool
 
LAST_UPDATE - Static variable in class uk.ac.ic.doc.automed.p2p.protocol.P2PConstants
 
lastCharKeyword - Static variable in class uk.ac.ic.doc.automed.reps.Syntax.Token
 
lastConstructKeyword - Static variable in class uk.ac.ic.doc.automed.reps.Syntax.Token
 
LastIndexOf - Class in uk.ac.bbk.dcs.automed.qproc.functions.string
Class Task Description
LastIndexOf() - Constructor for class uk.ac.bbk.dcs.automed.qproc.functions.string.LastIndexOf
 
lastKeyword - Static variable in class uk.ac.ic.doc.automed.reps.Syntax.Token
 
lastModelKeyword - Static variable in class uk.ac.ic.doc.automed.reps.Syntax.Token
 
lastSchemaKeyword - Static variable in class uk.ac.ic.doc.automed.reps.Syntax.Token
 
lastSchemeKeyword - Static variable in class uk.ac.ic.doc.automed.reps.Syntax.Token
 
lastTransformationKeyword - Static variable in class uk.ac.ic.doc.automed.reps.Syntax.Token
 
launchGui() - Method in class uk.ac.ic.doc.automed.p2p.gui.PeerApplication
 
launchLoginFrame() - Method in class uk.ac.ic.doc.automed.p2p.gui.PeerApplication
 
launchMainFrame() - Method in class uk.ac.ic.doc.automed.p2p.gui.PeerApplication
 
LAVInvRulesViewMap - Class in uk.ac.bbk.dcs.automed.qproc.reformulate
Class containing LAV composite views between a single source schema and a single target schema.
LAVInvRulesViewMap(Schema, Schema, QueryProcessorConfiguration) - Constructor for class uk.ac.bbk.dcs.automed.qproc.reformulate.LAVInvRulesViewMap
This constructor is called from CompositeViewMap class getInstance() method.
LAVQueryReformulationException - Exception in uk.ac.bbk.dcs.automed.qproc.reformulate
LAV queries may not always reformulate.
LAVQueryReformulationException(String) - Constructor for exception uk.ac.bbk.dcs.automed.qproc.reformulate.LAVQueryReformulationException
 
LAVQueryReformulationException(String, Exception) - Constructor for exception uk.ac.bbk.dcs.automed.qproc.reformulate.LAVQueryReformulationException
 
layout(AutoLayoutTreeObject) - Static method in class uk.ac.ic.doc.automed.editor.autolayout.AutoLayoutTreeObject
 
layoutContainer(Container) - Method in class uk.ac.ic.doc.automed.editor.PinBoardLayout
 
LayoutInterface - Interface in uk.ac.ic.doc.automed.editor.layout
 
LB - Static variable in interface uk.ac.bbk.dcs.automed.qproc.translators.xquery.XQuery2IQLConstants
 
LCB - Static variable in class uk.ac.bbk.dcs.automed.qproc.iql.QSym
 
LCOMP - Static variable in interface uk.ac.bbk.dcs.automed.qproc.annotate.grammars.simpleComp.SimpleCompConstants
 
LCOMP - Static variable in interface uk.ac.bbk.dcs.automed.qproc.annotate.grammars.simpleCompAppend.SimpleCompAppendConstants
 
LCOMP - Static variable in interface uk.ac.bbk.dcs.automed.qproc.annotate.grammars.simpleCompAppendMonus.SimpleCompAppendMonusConstants
 
LDAB - Static variable in class uk.ac.bbk.dcs.automed.qproc.iql.FSym
 
LDAB - Static variable in class uk.ac.bbk.dcs.automed.qproc.iql.QSym
 
leaveGroup() - Method in class uk.ac.ic.doc.automed.p2p.communication.MulticastServer
Leaves multicast group
LEFT_BRACKET - Static variable in class uk.ac.ic.doc.rodex.qproc.Util
left bracket for scheme name, default = '<<'
LEFT_VAR_BRACKET - Static variable in class uk.ac.ic.doc.rodex.qproc.Util
 
leftBrace - Static variable in class uk.ac.ic.doc.automed.reps.Syntax.Token
 
leftBracket - Static variable in class uk.ac.ic.doc.automed.reps.Syntax.Token
 
Length - Class in uk.ac.bbk.dcs.automed.qproc.functions.string
Returns the length of the input string.
Length() - Constructor for class uk.ac.bbk.dcs.automed.qproc.functions.string.Length
 
length() - Method in class uk.ac.ic.doc.rodex.qproc.QueryRewriterResult
Return the number of view sets in the result
Less - Class in uk.ac.bbk.dcs.automed.qproc.functions.comparison
 
Less() - Constructor for class uk.ac.bbk.dcs.automed.qproc.functions.comparison.Less
 
LESS_THAN - Static variable in interface uk.ac.bbk.dcs.automed.qproc.translators.xquery.XQuery2IQLConstants
 
LESS_THAN_EQUALS - Static variable in interface uk.ac.bbk.dcs.automed.qproc.translators.xquery.XQuery2IQLConstants
 
LessEqual - Class in uk.ac.bbk.dcs.automed.qproc.functions.comparison
 
LessEqual() - Constructor for class uk.ac.bbk.dcs.automed.qproc.functions.comparison.LessEqual
 
LESSTHAN - Static variable in class uk.ac.ic.doc.automed.wrappers.SQLQuery
 
LESSTHANEQUAL - Static variable in class uk.ac.ic.doc.automed.wrappers.SQLQuery
 
Let - Class in uk.ac.bbk.dcs.automed.qproc.functions.internal
 
Let() - Constructor for class uk.ac.bbk.dcs.automed.qproc.functions.internal.Let
 
Let - Static variable in class uk.ac.bbk.dcs.automed.qproc.iql.QSym
 
LET - Static variable in interface uk.ac.bbk.dcs.automed.qproc.translators.xquery.XQuery2IQLConstants
 
letExpr(HashMap) - Method in class uk.ac.bbk.dcs.automed.qproc.translators.xquery.XQuery2IQL
 
LEVEL_ALL - Static variable in class uk.ac.ic.doc.automed.util.Debugger
All debug information
LEVEL_ERROR - Static variable in class uk.ac.ic.doc.automed.util.Debugger
Error information
LEVEL_FINE - Static variable in class uk.ac.ic.doc.automed.util.Debugger
Application operations with some details
LEVEL_FINER - Static variable in class uk.ac.ic.doc.automed.util.Debugger
Application operations with greater details
LEVEL_FINEST - Static variable in class uk.ac.ic.doc.automed.util.Debugger
Application operations with finest details
LEVEL_INFO - Static variable in class uk.ac.ic.doc.automed.util.Debugger
Debug information to let user know what is going on
LEVEL_OFF - Static variable in class uk.ac.ic.doc.automed.util.Debugger
No debug at all
LEVEL_WARN - Static variable in class uk.ac.ic.doc.automed.util.Debugger
Warning information
LexicalError(boolean, int, int, int, String, char) - Static method in error uk.ac.bbk.dcs.automed.qproc.annotate.grammars.schemes.TokenMgrError
Returns a detailed message for the Error when it is thrown by the token manager to indicate a lexical error.
LexicalError(boolean, int, int, int, String, char) - Static method in error uk.ac.bbk.dcs.automed.qproc.annotate.grammars.simpleComp.TokenMgrError
Returns a detailed message for the Error when it is thrown by the token manager to indicate a lexical error.
LexicalError(boolean, int, int, int, String, char) - Static method in error uk.ac.bbk.dcs.automed.qproc.annotate.grammars.simpleCompAppend.TokenMgrError
Returns a detailed message for the Error when it is thrown by the token manager to indicate a lexical error.
LexicalError(boolean, int, int, int, String, char) - Static method in error uk.ac.bbk.dcs.automed.qproc.annotate.grammars.simpleCompAppendMonus.TokenMgrError
Returns a detailed message for the Error when it is thrown by the token manager to indicate a lexical error.
LexicalError(boolean, int, int, int, String, char) - Static method in error uk.ac.bbk.dcs.automed.qproc.translators.xquery.TokenMgrError
Returns a detailed message for the Error when it is thrown by the token manager to indicate a lexical error.
lexStateNames - Static variable in class uk.ac.bbk.dcs.automed.qproc.annotate.grammars.schemes.SchemesTokenManager
 
lexStateNames - Static variable in class uk.ac.bbk.dcs.automed.qproc.annotate.grammars.simpleComp.SimpleCompTokenManager
 
lexStateNames - Static variable in class uk.ac.bbk.dcs.automed.qproc.annotate.grammars.simpleCompAppend.SimpleCompAppendTokenManager
 
lexStateNames - Static variable in class uk.ac.bbk.dcs.automed.qproc.annotate.grammars.simpleCompAppendMonus.SimpleCompAppendMonusTokenManager
 
lexStateNames - Static variable in class uk.ac.bbk.dcs.automed.qproc.translators.xquery.XQuery2IQLTokenManager
 
Like - Class in uk.ac.bbk.dcs.automed.qproc.functions.string
 
Like() - Constructor for class uk.ac.bbk.dcs.automed.qproc.functions.string.Like
 
line - Variable in class uk.ac.bbk.dcs.automed.qproc.annotate.grammars.schemes.SimpleCharStream
 
line - Variable in class uk.ac.bbk.dcs.automed.qproc.annotate.grammars.simpleComp.SimpleCharStream
 
line - Variable in class uk.ac.bbk.dcs.automed.qproc.annotate.grammars.simpleCompAppend.SimpleCharStream
 
line - Variable in class uk.ac.bbk.dcs.automed.qproc.annotate.grammars.simpleCompAppendMonus.SimpleCharStream
 
line - Variable in class uk.ac.bbk.dcs.automed.qproc.translators.xquery.SimpleCharStream
 
line - Variable in class uk.ac.ic.doc.automed.editor.GUITool
 
Lineage - Class in uk.ac.bbk.dcs.automed.dataWarehousing.dlt
 
Lineage(ASG, String) - Constructor for class uk.ac.bbk.dcs.automed.dataWarehousing.dlt.Lineage
 
Lineage(ASG, String, String[], String, boolean, boolean) - Constructor for class uk.ac.bbk.dcs.automed.dataWarehousing.dlt.Lineage
 
link - Static variable in class uk.ac.ic.doc.automed.reps.Syntax.Token
 
link_nodal - Static variable in class uk.ac.ic.doc.automed.reps.Syntax.Token
 
LIST - Static variable in class uk.ac.ic.doc.automed.p2p.protocol.P2PConstants
 
LIST - Static variable in class uk.ac.ic.doc.automed.p2p.tree.TreeNode
 
List2Bag - Class in uk.ac.bbk.dcs.automed.qproc.functions.typeConversion
 
List2Bag() - Constructor for class uk.ac.bbk.dcs.automed.qproc.functions.typeConversion.List2Bag
 
List2Set - Class in uk.ac.bbk.dcs.automed.qproc.functions.typeConversion
 
List2Set() - Constructor for class uk.ac.bbk.dcs.automed.qproc.functions.typeConversion.List2Set
 
LIST_SCHEMA_LONG - Static variable in class uk.ac.ic.doc.automed.reps.Schema
Constant used to indicate where schemes in schemas must be listed with all details, including the OBID as returned by SchemaObject.getOBID() SchemaObject}, and the Construct as returned by SchemaObject.getConstruct().
LIST_SCHEMA_NORMAL - Static variable in class uk.ac.ic.doc.automed.reps.Schema
Constant used to indicate where schemes in schemas must be listed with all the type of each SchemaObject prefixing the scheme of each object.
LIST_SCHEMA_SHORT - Static variable in class uk.ac.ic.doc.automed.reps.Schema
Constant used to indicate where schemes in schemas must be listed with the minimum of detail.
listNodes() - Method in class uk.ac.bbk.dcs.automed.hdmstore.HdmStore
Want to display all the nodes so pass just a wildcard as a the pattern
listNodes(String) - Method in class uk.ac.bbk.dcs.automed.hdmstore.HdmStore
List the instance nodes of the passed nodeType (or wildcard)
listOfSchemes(boolean) - Method in class uk.ac.bbk.dcs.automed.qproc.iql.ASG
Returns a list of the schemes used in the ASG as String objects.
listOfSchemes(ASG, boolean) - Static method in class uk.ac.bbk.dcs.automed.qproc.iql.ASG
Returns a list of the schemes used in the ASG as String objects.
listPathway(Pathway) - Static method in class uk.ac.bbk.dcs.automed.evolution.EvolutionUtility
 
listPathway(Pathway) - Static method in class uk.ac.bbk.dcs.automed.evolution2.EvolutionUtility
 
listPathway() - Method in class uk.ac.bbk.dcs.automed.xml.relational.TransformationsIssuer
 
listPathway() - Method in class uk.ac.bbk.dcs.automed.xml.xmldssGraph.XMLDSSRestructurer
 
listSchema() - Method in class uk.ac.ic.doc.automed.reps.Schema
List the Schema to the current output in a form designed for human interpretation.
listSchema(PrintStream, int, boolean) - Method in class uk.ac.ic.doc.automed.reps.Schema
List the Schema to an output stream, using the specified format.
listSchema(PrintStream) - Method in class uk.ac.ic.doc.automed.reps.Schema
Shorthand for calling listSchema(out,LIST_SCHEMA_NORMAL)
listSchema(PrintStream, int) - Method in class uk.ac.ic.doc.automed.reps.Schema
Shorthand for calling listSchema(out,LIST_SCHEMA_NORMAL,false)
listSchemaHelp - Static variable in class uk.ac.ic.doc.automed.editor.Editor
 
listSchemaSyntax - Static variable in class uk.ac.ic.doc.automed.editor.Editor
 
listTransformationPathway(int, int) - Static method in class uk.ac.bbk.dcs.automed.xml.utilities.XMLUtilities
Prints out the transformation pathway created by the schema transformation algorithm.
listTuple() - Method in class uk.ac.bbk.dcs.automed.qproc.annotate.grammars.simpleComp.SimpleComp
 
listTuple() - Method in class uk.ac.bbk.dcs.automed.qproc.annotate.grammars.simpleCompAppend.SimpleCompAppend
 
listTuple() - Method in class uk.ac.bbk.dcs.automed.qproc.annotate.grammars.simpleCompAppendMonus.SimpleCompAppendMonus
 
ListUtil - Class in uk.ac.ic.doc.automed.util
ListUtil.java
LLSB - Static variable in class uk.ac.bbk.dcs.automed.qproc.iql.QSym
 
loadBrowseWindow() - Method in class uk.ac.ic.doc.automed.editor.PatternWritingTool
 
loadDriver(String) - Static method in class uk.ac.ic.doc.automed.util.db.DBAccessFactory
JDBC driver string to access the data source
LoadFromFile - Class in uk.ac.bbk.dcs.automed.qproc.functions
 
LoadFromFile() - Constructor for class uk.ac.bbk.dcs.automed.qproc.functions.LoadFromFile
 
loadPatternWindow(String) - Method in class uk.ac.ic.doc.automed.editor.PatternWritingTool
 
loadPeers() - Method in class uk.ac.ic.doc.automed.p2p.directory.P2PDirectory
load peers from database
loadSchema(Object[]) - Static method in class uk.ac.ic.doc.automed.editor.XMLSchemaEditor
Allows an existing Automed XML Schema to be loaded into the schema editor
loArea - Variable in class uk.ac.ic.doc.automed.editor.IQLTool
 
LOG_FILE - Static variable in class uk.ac.ic.doc.automed.util.LogController
 
LOG_FILE - Static variable in class uk.ac.ic.doc.automed.util.LogOutputHandler
 
LogConsole - Class in uk.ac.ic.doc.automed.editor
LogConsole.java A centralised console for logging messages
LogConsole() - Constructor for class uk.ac.ic.doc.automed.editor.LogConsole
Creates a new instance of LogConsole
LogController - Class in uk.ac.ic.doc.automed.util
LogController.java

Customise logging behaviour: sending all log messages to a file using a customised log format.
LogController(String, String) - Constructor for class uk.ac.ic.doc.automed.util.LogController
Creates a new instance of LogController
loggedIn() - Method in class uk.ac.ic.doc.automed.p2p.gui.PeerApplication
The application has now logged in to the Directory, so enter "running" state where communication with Directory can be made.
logger - Variable in class uk.ac.bbk.dcs.automed.qproc.annotate.StandardQueryAnnotationProvider
 
logger - Variable in class uk.ac.bbk.dcs.automed.qproc.evaluate.Evaluator
 
logger - Variable in class uk.ac.bbk.dcs.automed.qproc.functions.BuiltInFunction
 
logger - Static variable in class uk.ac.bbk.dcs.automed.qproc.iql.ASG
 
logger - Variable in class uk.ac.bbk.dcs.automed.qproc.iql.Cell
 
logger - Static variable in class uk.ac.bbk.dcs.automed.qproc.iql.IQLUtility
 
logger - Variable in class uk.ac.bbk.dcs.automed.qproc.OldQueryProcessor
 
logger - Variable in class uk.ac.bbk.dcs.automed.qproc.optimise.ExperimentalOptimisationProvider
 
logger - Variable in class uk.ac.bbk.dcs.automed.qproc.optimise.StandardOptimisationProvider
 
logger - Variable in class uk.ac.bbk.dcs.automed.qproc.reformulate.GAVQueryReformulationProvider
 
logger - Variable in class uk.ac.bbk.dcs.automed.wrappers.IQLTranslator
 
logger - Static variable in class uk.ac.bbk.dcs.automed.xml.experiments.crime.CrimeSchemaConform
 
logger - Static variable in class uk.ac.bbk.dcs.automed.xml.experiments.crime.CrimeSchemaMaterialisation
 
logger - Static variable in class uk.ac.bbk.dcs.automed.xml.experiments.crime.CrimeSchemaQuery
 
logger - Static variable in class uk.ac.bbk.dcs.automed.xml.experiments.crime.CrimeSchemaQueryTest
 
logger - Static variable in class uk.ac.bbk.dcs.automed.xml.experiments.crime.CrimeTest
 
logger - Static variable in class uk.ac.bbk.dcs.automed.xml.experiments.crime.Test
 
logger - Static variable in class uk.ac.bbk.dcs.automed.xml.experiments.ws.FormatConversionIPI
 
logger - Static variable in class uk.ac.bbk.dcs.automed.xml.experiments.ws.WrapInterproOutput
 
logger - Static variable in class uk.ac.bbk.dcs.automed.xml.experiments.ws.WrapUniProtOutput
 
logger - Static variable in class uk.ac.bbk.dcs.automed.xml.utilities.UIDUtility
 
logger - Static variable in class uk.ac.bbk.dcs.automed.xml.wrappers.XMLDSSDOM
 
logger - Static variable in class uk.ac.bbk.dcs.automed.xml.wrappers.XMLDSSFromAMSchema
 
logger - Static variable in class uk.ac.bbk.dcs.automed.xml.wrappers.XMLDSSFromDTD
 
logger - Static variable in class uk.ac.bbk.dcs.automed.xml.wrappers.XMLDSSFromXMLSchema
 
logger - Static variable in class uk.ac.bbk.dcs.automed.xml.wrappers.XMLWrapper
 
logger - Variable in class uk.ac.bbk.dcs.automed.xml.XMLRestructurer
 
LOGGER - Static variable in class uk.ac.ic.doc.automed.p2p.protocol.P2PConstants
Context: logger
Logger - Class in uk.ac.ic.doc.automed.util
 
Logger() - Constructor for class uk.ac.ic.doc.automed.util.Logger
 
LOGGER_NAME - Static variable in class uk.ac.bbk.dcs.automed.qproc.QProcLogger
 
loggingInit() - Method in class uk.ac.bbk.dcs.automed.qproc.OldQueryProcessor
 
loggingInit() - Method in class uk.ac.bbk.dcs.automed.qproc.QueryProcessor
 
loggingInit() - Method in class uk.ac.bbk.dcs.automed.qproc.TempQueryProcessor
 
LogicalRootLayout - Class in uk.ac.ic.doc.automed.editor.layout
 
LogicalRootLayout(Gui, Object[]) - Constructor for class uk.ac.ic.doc.automed.editor.layout.LogicalRootLayout
 
logicalRootLayout(Gui, Object[]) - Static method in class uk.ac.ic.doc.automed.editor.layout.LogicalRootLayout
 
LoginFrame - Class in uk.ac.ic.doc.automed.p2p.gui
 
LoginFrame(PeerApplication, PeerStateHandler) - Constructor for class uk.ac.ic.doc.automed.p2p.gui.LoginFrame
 
LoginGui - Class in uk.ac.ic.doc.rodex.p2p.gui
LoginGui.java
LoginGui(PeerApplication, PeerStateHandler) - Constructor for class uk.ac.ic.doc.rodex.p2p.gui.LoginGui
Creates a new instance of LoginGui
logMaps() - Method in class uk.ac.bbk.dcs.automed.wrappers.IQLTranslator
 
LogOutputHandler - Class in uk.ac.ic.doc.automed.util
LogOutputHandler.java
LogOutputHandler(int) - Constructor for class uk.ac.ic.doc.automed.util.LogOutputHandler
Creates a new instance of LogHandler Set default value of append to true
LogOutputHandler(int, boolean) - Constructor for class uk.ac.ic.doc.automed.util.LogOutputHandler
Creates a new instance of LogHandler
LogServer - Class in uk.ac.ic.doc.automed.util
LogServer.java

Represents the logging server
LogServer() - Constructor for class uk.ac.ic.doc.automed.util.LogServer
Creates a new instance of LogServer
LogServer(RequestListener) - Constructor for class uk.ac.ic.doc.automed.util.LogServer
Start logger with a custom request listener
LONG_TOKEN - Static variable in class uk.ac.ic.doc.automed.wrappers.AutoMedQuery
 
longValue() - Method in class uk.ac.ic.doc.automed.wrappers.AutoMedInteger
Return the value of this AutoMedInteger as an long
lookingAhead - Variable in class uk.ac.bbk.dcs.automed.qproc.translators.xquery.XQuery2IQL
 
LOOPBACK_ADDRESS - Static variable in class uk.ac.ic.doc.automed.p2p.Constants
The local host address: 127.0.0.1
LOWER_BOUND - Static variable in class uk.ac.bbk.dcs.automed.qproc.GQP
Deprecated.  
LowerCase - Class in uk.ac.bbk.dcs.automed.qproc.functions.string
Turns the input string into lowercase.
LowerCase() - Constructor for class uk.ac.bbk.dcs.automed.qproc.functions.string.LowerCase
 
LowLevelWrapperHdm - Class in uk.ac.bbk.dcs.automed.hdmstore
The LowLevelWrapperHdm passes queries to the HdmStore and returns the results in the HDM specifc format of a Linked List of EdgeElements each representing a tuple.
LowLevelWrapperHdm(HdmStore) - Constructor for class uk.ac.bbk.dcs.automed.hdmstore.LowLevelWrapperHdm
The constructor is passed the HdmStore to be used
LP - Static variable in interface uk.ac.bbk.dcs.automed.qproc.translators.xquery.XQuery2IQLConstants
 
LRB - Static variable in class uk.ac.bbk.dcs.automed.qproc.iql.FSym
 
LRB - Static variable in class uk.ac.bbk.dcs.automed.qproc.iql.QSym
 
LSB - Static variable in class uk.ac.bbk.dcs.automed.qproc.iql.QSym
 
LSB - Static variable in interface uk.ac.bbk.dcs.automed.qproc.translators.xquery.XQuery2IQLConstants
 

M

main(String[]) - Static method in class uk.ac.bbk.dcs.automed.dataWarehousing.dlt.DataLineageTracing
 
main(String[]) - Static method in class uk.ac.bbk.dcs.automed.dataWarehousing.dlt.DemoDLT
 
main(String[]) - Static method in class uk.ac.bbk.dcs.automed.dataWarehousing.dlt.Lineage
 
main(String[]) - Static method in class uk.ac.bbk.dcs.automed.dataWarehousing.dlt.TransfStep
 
main(String[]) - Static method in class uk.ac.bbk.dcs.automed.dataWarehousing.dltInterface
This method initializes jPanel
main(String[]) - Static method in class uk.ac.bbk.dcs.automed.dataWarehousing.util.GetIQLSource
 
main(String[]) - Static method in class uk.ac.bbk.dcs.automed.dataWarehousing.util.IQLEvaluator4DW
 
main(String[]) - Static method in class uk.ac.bbk.dcs.automed.dataWarehousing.util.QueryDecomposer
 
main(String[]) - Static method in class uk.ac.bbk.dcs.automed.dataWarehousing.util.Tools4DW
 
main(String[]) - Static method in class uk.ac.bbk.dcs.automed.evolution.EvolutionUtility
 
main(String[]) - Static method in class uk.ac.bbk.dcs.automed.evolution2.EvolutionUtility
 
main(String[]) - Static method in class uk.ac.bbk.dcs.automed.evolution2.schemaEvolution.ExtensionalSchemaEvolution
 
main(String[]) - Static method in class uk.ac.bbk.dcs.automed.hdmstore.HdmStoreCmd
main creates an HdmStoreCmd and passes the arguments
main(String[]) - Static method in class uk.ac.bbk.dcs.automed.qproc.iql.ASGCollection
 
main(String[]) - Static method in class uk.ac.bbk.dcs.automed.qproc.iql.ASGCollectionIterator
 
main(String[]) - Static method in class uk.ac.bbk.dcs.automed.qproc.iql.ASGComprehension
 
main(String[]) - Static method in class uk.ac.bbk.dcs.automed.qproc.iql.ASGComprehensionMiniCon
 
main(String[]) - Static method in class uk.ac.bbk.dcs.automed.qproc.iql.ASGTuple
 
main(String[]) - Static method in class uk.ac.bbk.dcs.automed.qproc.reformulate.GAVQueryReformulationProvider
 
main(String[]) - Static method in class uk.ac.bbk.dcs.automed.qproc.reformulate.QueryReformulator
 
main(String[]) - Static method in class uk.ac.bbk.dcs.automed.qproc.TempQueryProcessor
Shows how to use the qproc framework
main(String[]) - Static method in class uk.ac.bbk.dcs.automed.xml.experiments.crime.CrimeSchemaConform
 
main(String[]) - Static method in class uk.ac.bbk.dcs.automed.xml.experiments.crime.CrimeSchemaMaterialisation
 
main(String[]) - Static method in class uk.ac.bbk.dcs.automed.xml.experiments.crime.CrimeSchemaQuery
 
main(String[]) - Static method in class uk.ac.bbk.dcs.automed.xml.experiments.crime.CrimeSchemaQueryTest
 
main(String[]) - Static method in class uk.ac.bbk.dcs.automed.xml.experiments.crime.CrimeSchemaWrap
 
main(String[]) - Static method in class uk.ac.bbk.dcs.automed.xml.experiments.crime.CrimeTest
 
main(String[]) - Static method in class uk.ac.bbk.dcs.automed.xml.experiments.crime.Test
 
main(String[]) - Static method in class uk.ac.bbk.dcs.automed.xml.experiments.other.set0.SetA100x52
 
main(String[]) - Static method in class uk.ac.bbk.dcs.automed.xml.experiments.other.set0.SetA150x52
 
main(String[]) - Static method in class uk.ac.bbk.dcs.automed.xml.experiments.other.set0.SetA200x52
 
main(String[]) - Static method in class uk.ac.bbk.dcs.automed.xml.experiments.other.set0.SetA250x52
 
main(String[]) - Static method in class uk.ac.bbk.dcs.automed.xml.experiments.other.set0.SetA50x52
 
main(String[]) - Static method in class uk.ac.bbk.dcs.automed.xml.experiments.other.set1.Set1
 
main(String[]) - Static method in class uk.ac.bbk.dcs.automed.xml.experiments.other.set1.Set1A100x20
 
main(String[]) - Static method in class uk.ac.bbk.dcs.automed.xml.experiments.other.set1.Set1A20x20
 
main(String[]) - Static method in class uk.ac.bbk.dcs.automed.xml.experiments.other.set1.Set1A40x20
 
main(String[]) - Static method in class uk.ac.bbk.dcs.automed.xml.experiments.other.set1.Set1A60x20
 
main(String[]) - Static method in class uk.ac.bbk.dcs.automed.xml.experiments.other.set1.Set1A80x20
 
main(String[]) - Static method in class uk.ac.bbk.dcs.automed.xml.experiments.other.set1.Set1B100x20
 
main(String[]) - Static method in class uk.ac.bbk.dcs.automed.xml.experiments.other.set1.Set1B20x20
 
main(String[]) - Static method in class uk.ac.bbk.dcs.automed.xml.experiments.other.set1.Set1B40x20
 
main(String[]) - Static method in class uk.ac.bbk.dcs.automed.xml.experiments.other.set1.Set1B60x20
 
main(String[]) - Static method in class uk.ac.bbk.dcs.automed.xml.experiments.other.set1.Set1B80x20
 
main(String[]) - Static method in class uk.ac.bbk.dcs.automed.xml.experiments.other.set1.Set1C100x20
 
main(String[]) - Static method in class uk.ac.bbk.dcs.automed.xml.experiments.other.set1.Set1C20x20
 
main(String[]) - Static method in class uk.ac.bbk.dcs.automed.xml.experiments.other.set1.Set1C40x20
 
main(String[]) - Static method in class uk.ac.bbk.dcs.automed.xml.experiments.other.set1.Set1C60x20
 
main(String[]) - Static method in class uk.ac.bbk.dcs.automed.xml.experiments.other.set1.Set1C80x20
 
main(String[]) - Static method in class uk.ac.bbk.dcs.automed.xml.experiments.other.set2.Set2A100x20
 
main(String[]) - Static method in class uk.ac.bbk.dcs.automed.xml.experiments.other.set2.Set2A20x20
 
main(String[]) - Static method in class uk.ac.bbk.dcs.automed.xml.experiments.other.set2.Set2A40x20
 
main(String[]) - Static method in class uk.ac.bbk.dcs.automed.xml.experiments.other.set2.Set2A60x20
 
main(String[]) - Static method in class uk.ac.bbk.dcs.automed.xml.experiments.other.set2.Set2A80x20
 
main(String[]) - Static method in class uk.ac.bbk.dcs.automed.xml.experiments.other.set2.Set2B100x20
 
main(String[]) - Static method in class uk.ac.bbk.dcs.automed.xml.experiments.other.set2.Set2B20x20
 
main(String[]) - Static method in class uk.ac.bbk.dcs.automed.xml.experiments.other.set2.Set2B40x20
 
main(String[]) - Static method in class uk.ac.bbk.dcs.automed.xml.experiments.other.set2.Set2B60x20
 
main(String[]) - Static method in class uk.ac.bbk.dcs.automed.xml.experiments.other.set2.Set2B80x20
 
main(String[]) - Static method in class uk.ac.bbk.dcs.automed.xml.experiments.other.set3.Set3A1000x100
 
main(String[]) - Static method in class uk.ac.bbk.dcs.automed.xml.experiments.other.set3.Set3A100x100
 
main(String[]) - Static method in class uk.ac.bbk.dcs.automed.xml.experiments.other.set3.Set3A200x100
 
main(String[]) - Static method in class uk.ac.bbk.dcs.automed.xml.experiments.other.set3.Set3A300x100
 
main(String[]) - Static method in class uk.ac.bbk.dcs.automed.xml.experiments.other.set3.Set3A400x100
 
main(String[]) - Static method in class uk.ac.bbk.dcs.automed.xml.experiments.other.set3.Set3A500x100
 
main(String[]) - Static method in class uk.ac.bbk.dcs.automed.xml.experiments.other.set3.Set3B100x100
 
main(String[]) - Static method in class uk.ac.bbk.dcs.automed.xml.experiments.other.set3.Set3B100x200
 
main(String[]) - Static method in class uk.ac.bbk.dcs.automed.xml.experiments.other.set3.Set3B100x300
 
main(String[]) - Static method in class uk.ac.bbk.dcs.automed.xml.experiments.other.set3.Set3B100x400
 
main(String[]) - Static method in class uk.ac.bbk.dcs.automed.xml.experiments.other.set3.Set3B100x500
 
main(String[]) - Static method in class uk.ac.bbk.dcs.automed.xml.experiments.skolem.SkolemTypeICase1
 
main(String[]) - Static method in class uk.ac.bbk.dcs.automed.xml.experiments.skolem.SkolemTypeICase2
 
main(String[]) - Static method in class uk.ac.bbk.dcs.automed.xml.experiments.skolem.SkolemTypeICase3
 
main(String[]) - Static method in class uk.ac.bbk.dcs.automed.xml.experiments.skolem.SkolemTypeIICase1
 
main(String[]) - Static method in class uk.ac.bbk.dcs.automed.xml.experiments.skolem.SkolemTypeIICase2
 
main(String[]) - Static method in class uk.ac.bbk.dcs.automed.xml.experiments.skolem.SkolemTypeIICase3
 
main(String[]) - Static method in class uk.ac.bbk.dcs.automed.xml.experiments.skolem.SkolemTypeIIICase1
 
main(String[]) - Static method in class uk.ac.bbk.dcs.automed.xml.experiments.skolem.SkolemTypeIIICase2
 
main(String[]) - Static method in class uk.ac.bbk.dcs.automed.xml.experiments.skolem.SkolemTypeIIICase3
 
main(String[]) - Static method in class uk.ac.bbk.dcs.automed.xml.experiments.skolem.SkolemTypeIIICase4
 
main(String[]) - Static method in class uk.ac.bbk.dcs.automed.xml.experiments.skolem.SkolemTypeIVCase1
 
main(String[]) - Static method in class uk.ac.bbk.dcs.automed.xml.experiments.skolem.SkolemTypeIVCase2
 
main(String[]) - Static method in class uk.ac.bbk.dcs.automed.xml.experiments.skolem.SkolemTypeIVCase3
 
main(String[]) - Static method in class uk.ac.bbk.dcs.automed.xml.experiments.skolem.SkolemTypeIVCase4
 
main(String[]) - Static method in class uk.ac.bbk.dcs.automed.xml.experiments.skolem.SkolemTypeIVCase5
 
main(String[]) - Static method in class uk.ac.bbk.dcs.automed.xml.experiments.subclass.AlgoPerfExp
 
main(String[]) - Static method in class uk.ac.bbk.dcs.automed.xml.experiments.subclass.set1.IS1invIS2inv
 
main(String[]) - Static method in class uk.ac.bbk.dcs.automed.xml.experiments.subclass.set1.IS1IS1super
 
main(String[]) - Static method in class uk.ac.bbk.dcs.automed.xml.experiments.subclass.set1.IS1IS2
 
main(String[]) - Static method in class uk.ac.bbk.dcs.automed.xml.experiments.subclass.set1.RunAll
 
main(String[]) - Static method in class uk.ac.bbk.dcs.automed.xml.experiments.subclass.set1.Set1_121x101
 
main(String[]) - Static method in class uk.ac.bbk.dcs.automed.xml.experiments.subclass.set1.Set1_181x151
 
main(String[]) - Static method in class uk.ac.bbk.dcs.automed.xml.experiments.subclass.set1.Set1_241x201
 
main(String[]) - Static method in class uk.ac.bbk.dcs.automed.xml.experiments.subclass.set1.Set1_301x251
 
main(String[]) - Static method in class uk.ac.bbk.dcs.automed.xml.experiments.subclass.set1.Set1_61x51
 
main(String[]) - Static method in class uk.ac.bbk.dcs.automed.xml.experiments.subclassANDskolem.IS1IS2skolem1
 
main(String[]) - Static method in class uk.ac.bbk.dcs.automed.xml.experiments.subclassANDskolem.IS1IS2skolem2
 
main(String[]) - Static method in class uk.ac.bbk.dcs.automed.xml.experiments.thesis.AlgoPerfExp
 
main(String[]) - Static method in class uk.ac.bbk.dcs.automed.xml.experiments.thesis.Books
 
main(String[]) - Static method in class uk.ac.bbk.dcs.automed.xml.experiments.thesis.Books1
 
main(String[]) - Static method in class uk.ac.bbk.dcs.automed.xml.experiments.thesis.Books1Query
 
main(String[]) - Static method in class uk.ac.bbk.dcs.automed.xml.experiments.thesis.Books2
 
main(String[]) - Static method in class uk.ac.bbk.dcs.automed.xml.experiments.thesis.Books2Query
 
main(String[]) - Static method in class uk.ac.bbk.dcs.automed.xml.experiments.thesis.BooksQuery
 
main(String[]) - Static method in class uk.ac.bbk.dcs.automed.xml.experiments.ws.FormatConversionIPI
 
main(String[]) - Static method in class uk.ac.bbk.dcs.automed.xml.experiments.ws.WrapInterproOutput
 
main(String[]) - Static method in class uk.ac.bbk.dcs.automed.xml.experiments.ws.WrapUniProtOutput
 
main(String[]) - Static method in class uk.ac.bbk.dcs.automed.xml.wrappers.XMLDSSFromAMSchema
 
main(String[]) - Static method in class uk.ac.ic.doc.automed.DSR
Provides a simple command line interface to enable the configuration file to be checked.
main(String[]) - Static method in class uk.ac.ic.doc.automed.editor.CommandLineDriver
 
main(String[]) - Static method in class uk.ac.ic.doc.automed.editor.Editor
 
main(String[]) - Static method in class uk.ac.ic.doc.automed.editor.Gui
 
main(String[]) - Static method in class uk.ac.ic.doc.automed.editor.IQLTool
 
main(String[]) - Static method in class uk.ac.ic.doc.automed.editor.layout.RootLayout
 
main(String[]) - Static method in class uk.ac.ic.doc.automed.editor.LogConsole
 
main(String[]) - Static method in class uk.ac.ic.doc.automed.editor.PatternWritingTool
 
main(String[]) - Static method in class uk.ac.ic.doc.automed.editor.WrapperTool
 
main(String[]) - Static method in class uk.ac.ic.doc.automed.editor.XMLSchemaEditor
 
main(String[]) - Static method in class uk.ac.ic.doc.automed.MDR
Executing this class invokes this method which supplies a command line interface to the MDR.
main(String[]) - Static method in class uk.ac.ic.doc.automed.p2p.directory.P2PDirectory
Start directory from command-line
main(String[]) - Static method in class uk.ac.ic.doc.automed.p2p.directory.P2PDirectoryRepository
 
main(String[]) - Static method in class uk.ac.ic.doc.automed.p2p.gui.LoginFrame
 
main(String[]) - Static method in class uk.ac.ic.doc.automed.p2p.gui.PeerApplication
 
main(String[]) - Static method in class uk.ac.ic.doc.automed.p2p.gui.TablePanel
 
main(String[]) - Static method in class uk.ac.ic.doc.automed.p2p.messages.abstractlayer.AbstractMessage
 
main(String[]) - Static method in class uk.ac.ic.doc.automed.p2p.overlay.OverlayToolKit
 
main(String[]) - Static method in class uk.ac.ic.doc.automed.p2p.P2PRegistry
Start registry from command-line
main(String[]) - Static method in class uk.ac.ic.doc.automed.reps.SchemaMapGenerator
 
main(String[]) - Static method in class uk.ac.ic.doc.automed.SSMDR
 
main(String[]) - Static method in class uk.ac.ic.doc.automed.STR
 
main(String[]) - Static method in class uk.ac.ic.doc.automed.STRMethodTest
 
main(String[]) - Static method in class uk.ac.ic.doc.automed.tests.p2p.TestDBProcess
FOR TESTING!
main(String[]) - Static method in class uk.ac.ic.doc.automed.util.DateUtil
 
main(String[]) - Static method in class uk.ac.ic.doc.automed.util.LogOutputHandler
 
main(String[]) - Static method in class uk.ac.ic.doc.automed.util.ModuleConnector
 
main(String[]) - Static method in class uk.ac.ic.doc.automed.wrappers.P2PWrapper
 
main(String[]) - Static method in class uk.ac.ic.doc.automed.xml.XMLWriter
 
main(String[]) - Static method in class uk.ac.ic.doc.rodex.p2p.gui.CacheViewerFrame
testing
main(String[]) - Static method in class uk.ac.ic.doc.rodex.p2p.gui.CacheViewers
 
main(String[]) - Static method in class uk.ac.ic.doc.rodex.p2p.gui.QueryTool
 
main(String[]) - Static method in class uk.ac.ic.doc.rodex.p2p.protocol.SICP
 
main(String[]) - Static method in class uk.ac.ic.doc.rodex.qproc.ASGExplore
 
MAIN_OBJECT_CLASSES - Static variable in class uk.ac.ic.doc.automed.p2p.tree.TreeNode
 
MainFrame - Class in uk.ac.ic.doc.automed.p2p.gui
 
MainFrame(PeerApplication) - Constructor for class uk.ac.ic.doc.automed.p2p.gui.MainFrame
 
MainObjectClasses - Class in uk.ac.ic.doc.automed.p2p.tree
 
MainObjectClasses() - Constructor for class uk.ac.ic.doc.automed.p2p.tree.MainObjectClasses
 
makeIdentifierSafe(String) - Static method in class uk.ac.ic.doc.automed.reps.Syntax
 
makeNewPathway(Set, Schema, Schema) - Method in class uk.ac.bbk.dcs.automed.evolution.schemaModelEvolution.ExtensionalSchemaEvolution
 
makeStringSafe(String) - Static method in class uk.ac.ic.doc.automed.reps.Syntax
 
MalformedMessageException - Exception in uk.ac.ic.doc.automed.p2p.messages.abstractlayer
 
MalformedMessageException() - Constructor for exception uk.ac.ic.doc.automed.p2p.messages.abstractlayer.MalformedMessageException
 
MalformedMessageException(String) - Constructor for exception uk.ac.ic.doc.automed.p2p.messages.abstractlayer.MalformedMessageException
 
MalformedMessageException(Throwable) - Constructor for exception uk.ac.ic.doc.automed.p2p.messages.abstractlayer.MalformedMessageException
 
MalformedMessageException(String, Throwable) - Constructor for exception uk.ac.ic.doc.automed.p2p.messages.abstractlayer.MalformedMessageException
 
manageIntegrityConstraints(Schema, String) - Static method in class uk.ac.bbk.dcs.automed.evolution.schemaModelEvolution.ExtensionalSchemaEvolution
 
Map - Class in uk.ac.bbk.dcs.automed.qproc.functions.collections
 
Map() - Constructor for class uk.ac.bbk.dcs.automed.qproc.functions.collections.Map
 
MapDisplay - Class in uk.ac.ic.doc.automed.matching.modules.bidirectionalmap
 
MapDisplay(Map, Vectors) - Constructor for class uk.ac.ic.doc.automed.matching.modules.bidirectionalmap.MapDisplay
Creates new form MapDisplay
marginWidth - Static variable in class uk.ac.ic.doc.automed.editor.IQLTool
 
match(Schema) - Method in class uk.ac.ic.doc.automed.reps.Schema
Return a array of two Schemas, which are formed by extending two conformed schemes such that they are identical.
MatchException - Exception in uk.ac.ic.doc.automed.matching
 
MatchException(String) - Constructor for exception uk.ac.ic.doc.automed.matching.MatchException
 
MatchException() - Constructor for exception uk.ac.ic.doc.automed.matching.MatchException
 
MatchException(String, Throwable) - Constructor for exception uk.ac.ic.doc.automed.matching.MatchException
 
MatchingTool - Class in uk.ac.ic.doc.automed.editor
 
MatchingTool(Schema, Schema) - Constructor for class uk.ac.ic.doc.automed.editor.MatchingTool
 
MATERIALISED_TYPE - Static variable in class uk.ac.ic.doc.automed.reps.Schema
In addition to the properties of STORED_TYPE schemas, MATERIALISED_TYPE schemas may have data stored in the repository.
Materialiser - Class in uk.ac.bbk.dcs.automed.xml.materialisation
Class Task Description
Materialiser(Schema, Schema[], String, String, QueryProcessorConfiguration) - Constructor for class uk.ac.bbk.dcs.automed.xml.materialisation.Materialiser
 
materialiseSchema() - Method in class uk.ac.bbk.dcs.automed.xml.materialisation.DOMMaterialiser
 
materialiseSchema() - Method in class uk.ac.bbk.dcs.automed.xml.materialisation.Materialiser
 
materialiseSchema() - Method in class uk.ac.bbk.dcs.automed.xml.materialisation.XMLDSSDOMMaterialiser
 
materialiseSchema() - Method in class uk.ac.bbk.dcs.automed.xml.materialisation.XMLDSSMaterialiser
 
Max - Class in uk.ac.bbk.dcs.automed.qproc.functions.collections
 
Max() - Constructor for class uk.ac.bbk.dcs.automed.qproc.functions.collections.Max
 
MAX_CHARS - Static variable in class uk.ac.ic.doc.automed.matching.modules.bidirectionalmap.StatisticsModule
The maximum number of characters of an instance
MAX_CHARS - Static variable in class uk.ac.ic.doc.automed.matching.modules.intervals.StatisticsModule
The maximum number of characters of an instance
MAX_CHARS - Static variable in class uk.ac.ic.doc.automed.matching.modules.probability.binary.StatisticsModule
The maximum number of characters of an instance
MAX_CHARS - Static variable in class uk.ac.ic.doc.automed.matching.modules.probability.senary.StatisticsModule
The maximum number of characters of an instance
MAX_CHARS - Static variable in class uk.ac.ic.doc.automed.matching.SchemaElement
 
MAX_KEY_SIZE - Static variable in class uk.ac.ic.doc.automed.p2p.overlay.OverlayToolKit
 
MAX_OCCURS - Static variable in class uk.ac.ic.doc.automed.wrappers.XMLSchemaWrapperFactory
A feature option to model max occurs in any Schema the factory generates
MAX_SIZE_DIFFERENCE - Static variable in class uk.ac.ic.doc.automed.p2p.Constants
max number of bytes of difference b/w Constants.PACKET_SIZE and small data datagrams (used to fine-tune datagram fragmentation)
maxNextCharInd - Variable in class uk.ac.bbk.dcs.automed.qproc.annotate.grammars.schemes.SimpleCharStream
 
maxNextCharInd - Variable in class uk.ac.bbk.dcs.automed.qproc.annotate.grammars.simpleComp.SimpleCharStream
 
maxNextCharInd - Variable in class uk.ac.bbk.dcs.automed.qproc.annotate.grammars.simpleCompAppend.SimpleCharStream
 
maxNextCharInd - Variable in class uk.ac.bbk.dcs.automed.qproc.annotate.grammars.simpleCompAppendMonus.SimpleCharStream
 
maxNextCharInd - Variable in class uk.ac.bbk.dcs.automed.qproc.translators.xquery.SimpleCharStream
 
maxOccurs - Variable in class uk.ac.ic.doc.automed.wrappers.xsdomobject.XSDOMObject
 
mcds - Variable in class uk.ac.ic.doc.rodex.qproc.MiniConQueryRewriter
 
MDR - Class in uk.ac.ic.doc.automed
Properties used from the MDR data source
MDR() - Constructor for class uk.ac.ic.doc.automed.MDR
 
MDR_DataSourceName - Static variable in class uk.ac.ic.doc.automed.MDR
 
MDRException - Exception in uk.ac.ic.doc.automed
The class of exceptions generated by MDR.
MDRException(String) - Constructor for exception uk.ac.ic.doc.automed.MDRException
 
measureQuality() - Method in class uk.ac.ic.doc.automed.reps.Transformation
Measure the quality of this transformation based on the action and range of values involved
Member - Class in uk.ac.bbk.dcs.automed.qproc.functions.collections
 
Member() - Constructor for class uk.ac.bbk.dcs.automed.qproc.functions.collections.Member
 
MEMBER - Static variable in interface uk.ac.ic.doc.automed.xml.XMLifyConstants
 
memberMap - Variable in class uk.ac.bbk.dcs.automed.wrappers.IQLTranslator
Contains subselect statements and the variables assigned to them.
menuBar - Variable in class uk.ac.ic.doc.automed.editor.Gui
 
merge(Polygon, Polygon) - Static method in class uk.ac.ic.doc.automed.editor.autolayout.AutoLayoutTreeObject
Merges two polygons together.
merge(Hashtable, Hashtable) - Static method in class uk.ac.ic.doc.automed.matching.SimilarSchemaElementPair
Returns a Hashtable with the merged bidirectional degrees defined in the arguments.
mergeSchemas() - Method in class uk.ac.ic.doc.automed.matching.Integrator
 
mergeSchemas() - Method in class uk.ac.ic.doc.automed.matching.SQLIntegrator
Merges the schemas after the naming conflicts have been resolved.
mergeTypeHierarchy(TypeHierarchy) - Method in class uk.ac.ic.doc.automed.reps.TypeHierarchy
Merge a high level type hierarchy with the HDM CTH
mergeViews(Cell, Cell, int) - Static method in class uk.ac.bbk.dcs.automed.qproc.reformulate.ReformulationUtility
merge: RangexRange -> Range merge (Range e11 e12) (Range e21 e22) = Range (union e11 e21) (intersect e12 e22)
MESSAGE_BODY_DELIMITER - Static variable in class uk.ac.ic.doc.automed.p2p.protocol.P2PConstants
 
MESSAGE_DELIMITER - Static variable in class uk.ac.ic.doc.automed.p2p.protocol.P2PConstants
 
MessageFactory - Class in uk.ac.ic.doc.automed.p2p.messages.abstractlayer
 
MessageHandler - Class in uk.ac.ic.doc.automed.p2p
 
MessageHandler(AutoMedPeer) - Constructor for class uk.ac.ic.doc.automed.p2p.MessageHandler
 
METADATA - Static variable in class uk.ac.ic.doc.automed.p2p.protocol.P2PConstants
 
mimicThisCell(Cell) - Method in class uk.ac.bbk.dcs.automed.qproc.iql.Cell
Copies content of all fields of input Cell to current Cell.
Min - Class in uk.ac.bbk.dcs.automed.qproc.functions.collections
 
Min() - Constructor for class uk.ac.bbk.dcs.automed.qproc.functions.collections.Min
 
MiniConQueryRewriter - Class in uk.ac.ic.doc.rodex.qproc
 
MiniConQueryRewriter(ASG, List) - Constructor for class uk.ac.ic.doc.rodex.qproc.MiniConQueryRewriter
Creates a new instance of MiniConQueryRewriter given only a list of cached views
MiniConQueryRewriter(ASG, QueryAnalyser[]) - Constructor for class uk.ac.ic.doc.rodex.qproc.MiniConQueryRewriter
Creates a new instance of MiniConQueryRewriter given a list of metadata objects of cached views
MiniConQueryRewriter.MiniConDescription - Class in uk.ac.ic.doc.rodex.qproc
A private inner class to represent an MCD
MiniConQueryRewriter.MiniConDescription(QueryAnalyser) - Constructor for class uk.ac.ic.doc.rodex.qproc.MiniConQueryRewriter.MiniConDescription
 
MiniConQueryRewriterAdaptive - Class in uk.ac.ic.doc.rodex.qproc
MiniConQueryRewriterAdaptive.java Differs from MiniConQueryWriter in that this considers views which are only partially matched with the join sub-goals of the query.
MiniConQueryRewriterAdaptive(ASG, List) - Constructor for class uk.ac.ic.doc.rodex.qproc.MiniConQueryRewriterAdaptive
Creates a new instance of QueryRewriterForFiltering
MiniConQueryRewriterAdaptive(ASG, QueryAnalyser[]) - Constructor for class uk.ac.ic.doc.rodex.qproc.MiniConQueryRewriterAdaptive
 
MiniConQueryRewriterNonConjunctive - Class in uk.ac.ic.doc.rodex.qproc
QueryRewriterForFiltering.java

MiniConQueryRewriterNonConjunctive(ASG, List) - Constructor for class uk.ac.ic.doc.rodex.qproc.MiniConQueryRewriterNonConjunctive
Creates a new instance of QueryRewriterForFiltering
MiniConQueryRewriterNonConjunctive(ASG, QueryAnalyser[]) - Constructor for class uk.ac.ic.doc.rodex.qproc.MiniConQueryRewriterNonConjunctive
 
minimumLayoutSize(Container) - Method in class uk.ac.ic.doc.automed.editor.PinBoardLayout
 
minOccurs - Variable in class uk.ac.ic.doc.automed.wrappers.xsdomobject.XSDOMObject
The minOccurs and maxOccurs value for this object.
Minus - Class in uk.ac.bbk.dcs.automed.qproc.functions.arithmetic
 
Minus() - Constructor for class uk.ac.bbk.dcs.automed.qproc.functions.arithmetic.Minus
 
MINUS - Static variable in interface uk.ac.bbk.dcs.automed.qproc.translators.xquery.XQuery2IQLConstants
 
MINUTE - Static variable in class uk.ac.ic.doc.automed.wrappers.AutoMedTime
Granularity of one minute
Mod - Class in uk.ac.bbk.dcs.automed.qproc.functions.arithmetic
 
Mod() - Constructor for class uk.ac.bbk.dcs.automed.qproc.functions.arithmetic.Mod
 
MOD - Static variable in interface uk.ac.bbk.dcs.automed.qproc.translators.xquery.XQuery2IQLConstants
 
model - Static variable in class uk.ac.bbk.dcs.automed.rdfs.RDFSConstants
 
model - Static variable in class uk.ac.bbk.dcs.automed.xml.XMLConstants
 
MODEL - Static variable in class uk.ac.ic.doc.automed.p2p.MessageHandler
 
MODEL - Static variable in class uk.ac.ic.doc.automed.p2p.protocol.P2PConstants
Context: MODEL
Model - Class in uk.ac.ic.doc.automed.reps
Model.java The Model class represents instances of conceptual modelling languages, such as the relational model, ER, UML, XML, or ORM languages.
model - Static variable in class uk.ac.ic.doc.automed.reps.Syntax.Token
 
MODEL_ADDED - Static variable in class uk.ac.ic.doc.automed.reps.ModelChangeEvent
 
MODEL_CHANGED - Static variable in class uk.ac.ic.doc.automed.reps.ModelChangeEvent
 
MODEL_OBJECTS - Static variable in class uk.ac.ic.doc.automed.p2p.protocol.P2PConstants
 
MODEL_REMOVED - Static variable in class uk.ac.ic.doc.automed.reps.ModelChangeEvent
 
modelAdded(ModelChangeEvent) - Method in class uk.ac.ic.doc.automed.editor.Gui.EditorFrame
 
modelAdded(ModelChangeEvent) - Method in interface uk.ac.ic.doc.automed.reps.ModelsListener
 
modelChanged(ModelChangeEvent) - Method in interface uk.ac.ic.doc.automed.reps.ModelChangeListener
 
ModelChangeEvent - Class in uk.ac.ic.doc.automed.reps
An instance of this class describes some change has occurred associated with the Model class.
ModelChangeEvent(int, Positionable) - Constructor for class uk.ac.ic.doc.automed.reps.ModelChangeEvent
 
ModelChangeListener - Interface in uk.ac.ic.doc.automed.reps
An instance of this class describes some class that wants to be informed about changes associated with the Model class.
ModelDescription - Class in uk.ac.ic.doc.automed.p2p.directory
 
ModelDescription(String, String, String) - Constructor for class uk.ac.ic.doc.automed.p2p.directory.ModelDescription
 
ModelDescription(String, String, String, String[]) - Constructor for class uk.ac.ic.doc.automed.p2p.directory.ModelDescription
 
ModelDescription(Map) - Constructor for class uk.ac.ic.doc.automed.p2p.directory.ModelDescription
 
ModelEvolution - Class in uk.ac.bbk.dcs.automed.evolution2.modelEvolution
 
ModelEvolution() - Constructor for class uk.ac.bbk.dcs.automed.evolution2.modelEvolution.ModelEvolution
 
ModelEvolutionException - Exception in uk.ac.bbk.dcs.automed.evolution2.modelEvolution
 
ModelEvolutionException(String) - Constructor for exception uk.ac.bbk.dcs.automed.evolution2.modelEvolution.ModelEvolutionException
 
modelMap - Variable in class uk.ac.ic.doc.automed.p2p.tree.ObjectBuilder
 
modelName() - Method in class uk.ac.bbk.dcs.automed.qproc.annotate.grammars.schemes.Schemes
 
modelName() - Method in class uk.ac.bbk.dcs.automed.qproc.annotate.grammars.simpleComp.SimpleComp
 
modelName() - Method in class uk.ac.bbk.dcs.automed.qproc.annotate.grammars.simpleCompAppend.SimpleCompAppend
 
modelName() - Method in class uk.ac.bbk.dcs.automed.qproc.annotate.grammars.simpleCompAppendMonus.SimpleCompAppendMonus
 
modelName - Variable in class uk.ac.ic.doc.automed.wrappers.AutoMedWrapperFactory
 
ModelObjectBuilder - Class in uk.ac.ic.doc.automed.p2p.tree
 
ModelObjectBuilder(Root) - Constructor for class uk.ac.ic.doc.automed.p2p.tree.ModelObjectBuilder
Creates a new instance of ModelObjectBuilder
modelRemoved(ModelChangeEvent) - Method in class uk.ac.ic.doc.automed.editor.Gui.EditorFrame
 
modelRemoved(ModelChangeEvent) - Method in interface uk.ac.ic.doc.automed.reps.ModelChangeListener
 
modelRemoved(ModelChangeEvent) - Method in interface uk.ac.ic.doc.automed.reps.ModelsListener
 
MODELS_STRING - Static variable in class uk.ac.ic.doc.automed.p2p.protocol.P2PConstants
Field: MODELS_STRING - store a delimited string of model names
ModelsListener - Interface in uk.ac.ic.doc.automed.reps
Classes implementing this interface my get notification of any additions or deletions of Model instances.
ModifiedArray - Class in uk.ac.bbk.dcs.automed.qproc.functions
 
ModifiedArray(Cell) - Constructor for class uk.ac.bbk.dcs.automed.qproc.functions.ModifiedArray
 
ModifiedArray() - Constructor for class uk.ac.bbk.dcs.automed.qproc.functions.ModifiedArray
 
ModuleConnector - Class in uk.ac.ic.doc.automed.util
ModuleConnector.java Responsible for loading classes from Rodex project, creating object instances and invoking methods of these instances.
ModuleConnector() - Constructor for class uk.ac.ic.doc.automed.util.ModuleConnector
 
Monus - Class in uk.ac.bbk.dcs.automed.qproc.functions.collections
 
Monus() - Constructor for class uk.ac.bbk.dcs.automed.qproc.functions.collections.Monus
 
monus(ModifiedArray) - Method in class uk.ac.bbk.dcs.automed.qproc.functions.ModifiedArray
 
mouseClicked(MouseEvent) - Method in class uk.ac.ic.doc.automed.editor.MatchingTool
 
mouseEntered(MouseEvent) - Method in class uk.ac.ic.doc.automed.editor.MatchingTool
 
mouseExited(MouseEvent) - Method in class uk.ac.ic.doc.automed.editor.MatchingTool
 
mousePressed(MouseEvent) - Method in class uk.ac.ic.doc.automed.editor.MatchingTool
 
mouseReleased(MouseEvent) - Method in class uk.ac.ic.doc.automed.editor.MatchingTool
 
move(double, double) - Method in class uk.ac.ic.doc.automed.editor.autolayout.DPoint
 
move(DPoint) - Method in class uk.ac.ic.doc.automed.editor.autolayout.DPoint
 
moveInclusion(Gui, Object[]) - Static method in class uk.ac.ic.doc.automed.editor.Gui
Moves an inclusion constraint
moveInclusion(SchemaObject, SchemaObject) - Method in class uk.ac.ic.doc.automed.reps.HDMTransformations
Move an inclusion constraint between 2 identical nodes
MSAccessWrapper - Class in uk.ac.bbk.dcs.automed.wrappers
A lower level wrapper for the conforming to the AutoMed SQL high level wrapper for Postgres SQL databases.
MSAccessWrapper() - Constructor for class uk.ac.bbk.dcs.automed.wrappers.MSAccessWrapper
 
MSAccessWrapper(AccessMethod, String) - Constructor for class uk.ac.bbk.dcs.automed.wrappers.MSAccessWrapper
Generate a new wrapper instance from information held in the repository about how to access a data source.
MSAccessWrapperFactory - Class in uk.ac.bbk.dcs.automed.wrappers
A lower level wrapper factory for Postgres SQL databases conforming to the AutoMed SQL high level wrapper factory.
MSAccessWrapperFactory() - Constructor for class uk.ac.bbk.dcs.automed.wrappers.MSAccessWrapperFactory
 
msg(String) - Method in class uk.ac.bbk.dcs.automed.hdmstore.Debug
Write a normal level message
msg(String, int) - Method in class uk.ac.bbk.dcs.automed.hdmstore.Debug
Write a message, severity level is a parameter
msgQueue - Variable in class uk.ac.ic.doc.automed.p2p.communication.UDPServer
 
MULTI - Static variable in class uk.ac.ic.doc.automed.editor.UserActionClass
 
MULTICAST_ALL_DSP_ADDRESS - Static variable in class uk.ac.ic.doc.automed.p2p.Constants
Muticast group address: ALL_DSP (Directory Service Peers)
MULTICAST_ALL_DSP_PORT - Static variable in class uk.ac.ic.doc.automed.p2p.Constants
Muticast group port: ALL_DSP (Directory Service Peers)
MULTICAST_HOSTNAME - Static variable in class uk.ac.ic.doc.automed.p2p.Constants
Default multicast hostname which must resolve to the address of the interface used for multicast traffic
MulticastServer - Class in uk.ac.ic.doc.automed.p2p.communication
 
MulticastServer(String, int, RequestListener, int, int, int) - Constructor for class uk.ac.ic.doc.automed.p2p.communication.MulticastServer
Creates a new instance of MulticastServer
Multiply - Class in uk.ac.bbk.dcs.automed.qproc.functions.arithmetic
 
Multiply() - Constructor for class uk.ac.bbk.dcs.automed.qproc.functions.arithmetic.Multiply
 
multiply(BidirectionalDegree) - Method in class uk.ac.ic.doc.automed.matching.BidirectionalDegree
Multiplies the specified bidirectional degree to the current degree.
multiply(AutoMedFloat) - Method in class uk.ac.ic.doc.automed.wrappers.AutoMedFloat
Return the multiplication of two AutoMedFloats.
multiply(AutoMedInteger) - Method in class uk.ac.ic.doc.automed.wrappers.AutoMedInteger
Return the multiplication of two AutoMedIntegers.
myGraph - Variable in class uk.ac.ic.doc.automed.editor.autolayout.AutoLayout
 
myGraph - Static variable in class uk.ac.ic.doc.automed.editor.autolayout.AutoLayoutSchemaObject
 
myPositionableObj - Variable in class uk.ac.ic.doc.automed.editor.autolayout.AutoLayoutPositionable
Positionable object connected to this AutoLayoutPositionable.
mySchemas - Variable in class uk.ac.ic.doc.automed.p2p.PeerCache
 
MySchemasFrame - Class in uk.ac.ic.doc.automed.p2p.gui
 
MySchemasFrame(PeerApplication) - Constructor for class uk.ac.ic.doc.automed.p2p.gui.MySchemasFrame
 
myTable - Variable in class uk.ac.ic.doc.automed.p2p.gui.MainFrame
 

N

NaiveBayesModule - Class in uk.ac.ic.doc.automed.matching.modules.bidirectionalmap
The machine learning module that compares the schema elements by examining their instances.
NaiveBayesModule(SchemaElement[], SchemaElement[]) - Constructor for class uk.ac.ic.doc.automed.matching.modules.bidirectionalmap.NaiveBayesModule
Constructs a NaiveBayesModule to compare the specified schema elements in the input arrays.
name() - Method in class uk.ac.bbk.dcs.automed.hdmstore.Edge
Get the edge name
NAME - Static variable in class uk.ac.ic.doc.automed.matching.relationships.Compatibility
The name of the Compatibility semantic relationship
NAME - Static variable in class uk.ac.ic.doc.automed.matching.relationships.Disjointness
The name of the Disjointness semantic relationship
NAME - Static variable in class uk.ac.ic.doc.automed.matching.relationships.Equivalence
The name of the Equivalence semantic relationship
NAME - Static variable in class uk.ac.ic.doc.automed.matching.relationships.Incompatibility
The name of the Incompatibility semantic relationship
NAME - Static variable in class uk.ac.ic.doc.automed.matching.relationships.Overlapness
The name of the Overlapcess semantic relationship
NAME - Static variable in class uk.ac.ic.doc.automed.matching.relationships.Subset
The singleton instance of the Subset class
NAME - Static variable in class uk.ac.ic.doc.automed.matching.relationships.Superset
The singleton instance of the Superset class
name - Variable in class uk.ac.ic.doc.automed.p2p.AutoMedPeer.PeerProcessDescription
 
name - Variable in class uk.ac.ic.doc.automed.p2p.directory.ModelDescription
 
name - Variable in class uk.ac.ic.doc.automed.p2p.directory.PeerDescription
 
name - Variable in class uk.ac.ic.doc.automed.p2p.directory.SchemaDescription
 
NAME - Static variable in class uk.ac.ic.doc.automed.p2p.protocol.P2PConstants
 
name - Variable in class uk.ac.ic.doc.automed.p2p.protocol.Request.Register
 
name - Variable in class uk.ac.ic.doc.automed.p2p.protocol.Request.Remove
 
name - Variable in class uk.ac.ic.doc.automed.wrappers.xsdomobject.XSDOMObject
Object name
name - Variable in class uk.ac.ic.doc.automed.xml.XMLToken
 
name - Variable in class uk.ac.ic.doc.rodex.p2p.messages.applicationlayer.HelloMsg
 
nameField - Variable in class uk.ac.ic.doc.automed.p2p.gui.LoginFrame
 
NCTOKEN - Static variable in interface uk.ac.bbk.dcs.automed.qproc.translators.xquery.XQuery2IQLConstants
 
neMenuItem - Variable in class uk.ac.ic.doc.automed.editor.Gui
 
nestList - Static variable in class uk.ac.bbk.dcs.automed.xml.XMLConstants
 
NestListsFromRDB - Class in uk.ac.bbk.dcs.automed.xml.functions
Input 1: the unique ID of the parent element of the nestList
Input 2: the unique ID of the child element of the nestList
Input 3: the scheme of the relational table
NestListsFromRDB() - Constructor for class uk.ac.bbk.dcs.automed.xml.functions.NestListsFromRDB
 
Network - Class in uk.ac.ic.doc.automed.reps
 
Network(Schema[][], int) - Constructor for class uk.ac.ic.doc.automed.reps.Network
Constructs a directed network from the schema paths supplied.
Network(String, Schema[][], int) - Constructor for class uk.ac.ic.doc.automed.reps.Network
Constructs a directed network from the schema paths supplied.
Network(String, Schema[][], boolean, boolean, int) - Constructor for class uk.ac.ic.doc.automed.reps.Network
Constructs a network from the schema paths supplied.
NETWORK_ADDED - Static variable in class uk.ac.ic.doc.automed.reps.NetworkChangeEvent
 
NETWORK_CHANGED - Static variable in class uk.ac.ic.doc.automed.reps.NetworkChangeEvent
 
NETWORK_MERGED - Static variable in class uk.ac.ic.doc.automed.reps.NetworkChangeEvent
 
NETWORK_REMOVED - Static variable in class uk.ac.ic.doc.automed.reps.NetworkChangeEvent
 
NETWORK_SPLIT - Static variable in class uk.ac.ic.doc.automed.reps.NetworkChangeEvent
 
networkAdded(NetworkChangeEvent) - Method in class uk.ac.ic.doc.automed.editor.Gui.EditorFrame
 
networkAdded(NetworkChangeEvent) - Method in interface uk.ac.ic.doc.automed.reps.NetworksListener
 
networkChanged(NetworkChangeEvent) - Method in class uk.ac.ic.doc.automed.editor.Gui.EditorFrame
 
networkChanged(NetworkChangeEvent) - Method in interface uk.ac.ic.doc.automed.reps.NetworkChangeListener
 
networkChanged(NetworkChangeEvent) - Method in interface uk.ac.ic.doc.automed.reps.NetworksListener
 
NetworkChangeEvent - Class in uk.ac.ic.doc.automed.reps
 
NetworkChangeEvent(int, Object) - Constructor for class uk.ac.ic.doc.automed.reps.NetworkChangeEvent
 
NetworkChangeListener - Interface in uk.ac.ic.doc.automed.reps
 
networkMerged(NetworkChangeEvent) - Method in class uk.ac.ic.doc.automed.editor.Gui.EditorFrame
 
networkMerged(NetworkChangeEvent) - Method in interface uk.ac.ic.doc.automed.reps.NetworkChangeListener
 
networkRemoved(NetworkChangeEvent) - Method in class uk.ac.ic.doc.automed.editor.Gui.EditorFrame
 
networkRemoved(NetworkChangeEvent) - Method in interface uk.ac.ic.doc.automed.reps.NetworkChangeListener
 
networkRemoved(NetworkChangeEvent) - Method in interface uk.ac.ic.doc.automed.reps.NetworksListener
 
NetworksListener - Interface in uk.ac.ic.doc.automed.reps
 
networkSplit(NetworkChangeEvent) - Method in class uk.ac.ic.doc.automed.editor.Gui.EditorFrame
 
networkSplit(NetworkChangeEvent) - Method in interface uk.ac.ic.doc.automed.reps.NetworkChangeListener
 
NEW_PEER - Static variable in class uk.ac.ic.doc.automed.p2p.protocol.P2PConstants
Context
NEW_SCHEMA_Y_OFFSET - Static variable in class uk.ac.ic.doc.automed.reps.Schema
Default distance to place a new schema created by a transformation from the schema it is created from
newapplyExtendTransformation(Construct, String, String, String) - Method in class uk.ac.ic.doc.automed.reps.Schema
 
newAutoMedPeer(String, PeerStateHandler) - Static method in class uk.ac.ic.doc.automed.p2p.AutoMedPeer
Create a new AutoMedPeer if one does not already exist.
newAutoMedSchema(String) - Method in class uk.ac.ic.doc.automed.wrappers.AutoMedWrapper
Returns the Schema that represents in the datasource in terms of SchemaObjects in an AutoMed oriented manner.
newAutoMedWrapper() - Method in class uk.ac.bbk.dcs.automed.hdmstore.HdmWrapperFactory
 
newAutoMedWrapper() - Method in class uk.ac.bbk.dcs.automed.wrappers.MSAccessWrapperFactory
 
newAutoMedWrapper(String, String, String, String, String, AutoMedWrapperFactory) - Static method in class uk.ac.bbk.dcs.automed.xml.wrappers.EXISTWrapper
 
newAutoMedWrapper() - Method in class uk.ac.bbk.dcs.automed.xml.wrappers.EXISTWrapperFactory
 
newAutoMedWrapper(String, String, String, String, String, AutoMedWrapperFactory) - Static method in class uk.ac.bbk.dcs.automed.xml.wrappers.XMLWrapper
 
newAutoMedWrapper() - Method in class uk.ac.bbk.dcs.automed.xml.wrappers.XMLWrapperFactory
 
newAutoMedWrapper(AccessMethod) - Static method in class uk.ac.ic.doc.automed.wrappers.AutoMedWrapper
Deprecated. use getAutoMedWrapper(am) instead
newAutoMedWrapper(String, String, String, String, String, AutoMedWrapperFactory) - Static method in class uk.ac.ic.doc.automed.wrappers.AutoMedWrapper
Create an AutoMed Schema containing SchemaObjects that represent a database, in such a form that queries on that schema can be mapped by executeQuery in the query lanuage of the database.
newAutoMedWrapper(AccessMethod, String) - Static method in class uk.ac.ic.doc.automed.wrappers.AutoMedWrapper
Deprecated. use getAutoMedWrapper
newAutoMedWrapper() - Method in class uk.ac.ic.doc.automed.wrappers.AutoMedWrapperFactory
Create a new empty wrapper instance that this wrapper factory is then able to populate.
newAutoMedWrapper() - Method in class uk.ac.ic.doc.automed.wrappers.CSVWrapperFactory
 
newAutoMedWrapper() - Method in class uk.ac.ic.doc.automed.wrappers.HDMWrapperFactory
 
newAutoMedWrapper() - Method in class uk.ac.ic.doc.automed.wrappers.HsqldbWrapperFactory
 
newAutoMedWrapper(String, String, String, String, String, AutoMedWrapperFactory) - Static method in class uk.ac.ic.doc.automed.wrappers.OracleWrapper
Create an AutoMed Schema containing SchemaObjects that represent a database, in such a form that queries on that schema can be mapped by executeQuery in the query lanuage of the database.
newAutoMedWrapper() - Method in class uk.ac.ic.doc.automed.wrappers.OracleWrapperFactory
 
newAutoMedWrapper() - Method in class uk.ac.ic.doc.automed.wrappers.P2PWrapperFactory
 
newAutoMedWrapper() - Method in class uk.ac.ic.doc.automed.wrappers.PostgresWrapperFactory
 
newAutoMedWrapper() - Method in class uk.ac.ic.doc.automed.wrappers.QueryCacheWrapperFactory
Return a new instance of the QueryCacheWrapper
newAutoMedWrapper() - Method in class uk.ac.ic.doc.automed.wrappers.SchemaMatchingSQLWrapperFactory
 
newAutoMedWrapper() - Method in class uk.ac.ic.doc.automed.wrappers.SQLWrapperFactory
 
newAutoMedWrapper() - Method in class uk.ac.ic.doc.automed.wrappers.TransactSQLWrapperFactory
 
newAutoMedWrapper() - Method in class uk.ac.ic.doc.automed.wrappers.UMLWrapperFactory
 
newAutoMedWrapper() - Method in class uk.ac.ic.doc.automed.wrappers.XMLSchemaWrapperFactory
 
newAutoMedWrapper() - Method in class uk.ac.ic.doc.automed.wrappers.YattaWrapperFactory
 
newConnection() - Method in class uk.ac.ic.doc.automed.util.db.DBAccess
Creates a new connection to add to the pool
newConnection() - Method in class uk.ac.ic.doc.automed.util.db.DBEmbedded
 
newConnection() - Method in class uk.ac.ic.doc.automed.util.db.DBPostgres
 
newDataSourceException(String, Exception) - Static method in exception uk.ac.ic.doc.automed.wrappers.DataSourceException
Create a new DataSourceException only if necessary.
newDocument() - Static method in class uk.ac.ic.doc.automed.p2p.util.XmlHandler
 
newID() - Static method in class uk.ac.ic.doc.automed.p2p.util.Util
 
newInconsistentException(String, Exception) - Static method in exception uk.ac.ic.doc.automed.InconsistentException
Create a new InconsistentException only if necessary.
newInstance() - Static method in class uk.ac.ic.doc.automed.p2p.messages.abstractlayer.MessageFactory
 
newObjectsClass - Static variable in class uk.ac.ic.doc.automed.editor.autolayout.AutoLayoutPositionable
 
newPeer(String, PeerStateHandler) - Static method in class uk.ac.ic.doc.rodex.p2p.Peer
Creates a new instance of Peer
newPeerProcess(String, PeerStateHandler, String) - Static method in class uk.ac.ic.doc.rodex.p2p.Peer
Create a new peer with a different configuration
newQueryInstance(String) - Static method in class uk.ac.ic.doc.automed.qproc.ASGQuery
Creates a new instance of ASGQuery
newQueryInstance(Cell) - Static method in class uk.ac.ic.doc.automed.qproc.ASGQuery
Creates a new instance of ASGQuery
newRequest(String, String[]) - Static method in class uk.ac.ic.doc.automed.p2p.protocol.Request
 
newToken(int) - Static method in class uk.ac.bbk.dcs.automed.qproc.annotate.grammars.schemes.Token
Returns a new Token object, by default.
newToken(int) - Static method in class uk.ac.bbk.dcs.automed.qproc.annotate.grammars.simpleComp.Token
Returns a new Token object, by default.
newToken(int) - Static method in class uk.ac.bbk.dcs.automed.qproc.annotate.grammars.simpleCompAppend.Token
Returns a new Token object, by default.
newToken(int) - Static method in class uk.ac.bbk.dcs.automed.qproc.annotate.grammars.simpleCompAppendMonus.Token
Returns a new Token object, by default.
newToken(int) - Static method in class uk.ac.bbk.dcs.automed.qproc.translators.xquery.Token
Returns a new Token object, by default.
next - Variable in class uk.ac.bbk.dcs.automed.qproc.annotate.grammars.schemes.Token
A reference to the next regular (non-special) token from the input stream.
next - Variable in class uk.ac.bbk.dcs.automed.qproc.annotate.grammars.simpleComp.Token
A reference to the next regular (non-special) token from the input stream.
next - Variable in class uk.ac.bbk.dcs.automed.qproc.annotate.grammars.simpleCompAppend.Token
A reference to the next regular (non-special) token from the input stream.
next - Variable in class uk.ac.bbk.dcs.automed.qproc.annotate.grammars.simpleCompAppendMonus.Token
A reference to the next regular (non-special) token from the input stream.
next() - Method in class uk.ac.bbk.dcs.automed.qproc.iql.ASGCollectionIterator
 
next - Variable in class uk.ac.bbk.dcs.automed.qproc.translators.xquery.Token
A reference to the next regular (non-special) token from the input stream.
next() - Method in class uk.ac.ic.doc.automed.qproc.cache.DefaultQueryCache
Implements mandatory methods of the ListIterator interface Returns the metadata object of the next cache item
next() - Method in class uk.ac.ic.doc.automed.util.db.DBResultSet
Return the next
next() - Method in class uk.ac.ic.doc.automed.wrappers.AutoMedResult
Returns true if the cursor can be moved to a next row
next_token() - Method in class uk.ac.bbk.dcs.automed.qproc.iql.EnvLexer
 
next_token() - Method in class uk.ac.bbk.dcs.automed.qproc.iql.FLexer
 
nextError() - Method in class uk.ac.ic.doc.automed.xml.XMLReader
If separateErrors is set to true and nextToken() or peekToken() have (or would on next call) returned return null then getNextError will keep returning errors until the list is exhausted at which point it will return null otherwise it will just return null
nextToken(int, String) - Method in class uk.ac.ic.doc.automed.xml.XMLReader
throws an XMLReaderException if the next element or its name is not of the expected type
nextToken(int[], String[]) - Method in class uk.ac.ic.doc.automed.xml.XMLReader
 
nextToken(int) - Method in class uk.ac.ic.doc.automed.xml.XMLReader
 
nextToken(int[]) - Method in class uk.ac.ic.doc.automed.xml.XMLReader
 
nextToken() - Method in class uk.ac.ic.doc.automed.xml.XMLReader
 
nextVal(Connection, String) - Static method in class uk.ac.ic.doc.automed.util.db.SQLFunctions
Select the next value from a pre-defined sequence
This method is equivalent to nextval() SQL function.
NO_SERVICE - Static variable in class uk.ac.ic.doc.automed.p2p.protocol.P2PConstants
 
nodal - Static variable in class uk.ac.ic.doc.automed.reps.Syntax.Token
 
node() - Method in class uk.ac.bbk.dcs.automed.hdmstore.EdgeElement
is this element a node?
Node - Class in uk.ac.ic.doc.automed.reps
 
NODE_ADDED - Static variable in class uk.ac.ic.doc.automed.reps.NetworkChangeEvent
 
NODE_REMOVED - Static variable in class uk.ac.ic.doc.automed.reps.NetworkChangeEvent
 
nodeAdded(NetworkChangeEvent) - Method in class uk.ac.ic.doc.automed.editor.Gui.EditorFrame
 
nodeAdded(NetworkChangeEvent) - Method in interface uk.ac.ic.doc.automed.reps.NetworkChangeListener
 
nodeExists(Span) - Method in class uk.ac.bbk.dcs.automed.hdmstore.HdmStore
For the node instance specifed in the Span data structure check if it exists in the HDM store
nodeExists(String, String) - Method in class uk.ac.bbk.dcs.automed.hdmstore.HdmStore
For the node instance specifed by node type & value, check if it exists in the HDM store
nodeReidentify(SchemaObject, SchemaObject) - Method in class uk.ac.ic.doc.automed.reps.HDMTransformations
Node reidentify
nodeRemoved(NetworkChangeEvent) - Method in class uk.ac.ic.doc.automed.editor.Gui.EditorFrame
 
nodeRemoved(NetworkChangeEvent) - Method in interface uk.ac.ic.doc.automed.reps.NetworkChangeListener
 
nodeSpan - Static variable in class uk.ac.bbk.dcs.automed.hdmstore.HdmStore
 
nodeTypeExists(String) - Method in class uk.ac.bbk.dcs.automed.hdmstore.HdmStore
Check whether any instances of this node type are currently stored in the HDM store
nodeValue() - Method in class uk.ac.bbk.dcs.automed.hdmstore.EdgeElement
get the nodeValue
NONE - Static variable in class uk.ac.bbk.dcs.automed.hdmstore.Debug
 
NONSCALAR_COMPOUND_KEY - Static variable in class uk.ac.ic.doc.automed.wrappers.SQLWrapperFactory
 
NONVIRTUAL_SCHEMA_SEPARATOR - Static variable in class uk.ac.ic.doc.automed.reps.Network
The string to put between any non-virtual schemas in the network name
NORMAL - Static variable in class uk.ac.bbk.dcs.automed.hdmstore.Debug
 
Not - Class in uk.ac.bbk.dcs.automed.qproc.functions.logical
 
Not() - Constructor for class uk.ac.bbk.dcs.automed.qproc.functions.logical.Not
 
NOT - Static variable in class uk.ac.ic.doc.automed.wrappers.SQLQuery
 
NOT_EQUAL - Static variable in exception uk.ac.ic.doc.automed.IntegrityException
Exception caused by an operation doing some sort comparison where .
NOT_EQUALS - Static variable in interface uk.ac.bbk.dcs.automed.qproc.translators.xquery.XQuery2IQLConstants
 
NOTATION_DECL - Static variable in interface uk.ac.ic.doc.automed.xml.XMLifyConstants
 
notationDecl(String, String, String) - Method in class uk.ac.ic.doc.automed.xml.XMLReader
 
NotEqual - Class in uk.ac.bbk.dcs.automed.qproc.functions.comparison
 
NotEqual() - Constructor for class uk.ac.bbk.dcs.automed.qproc.functions.comparison.NotEqual
 
NOTEQUAL - Static variable in class uk.ac.ic.doc.automed.wrappers.SQLQuery
 
NotFoundException - Exception in uk.ac.ic.doc.automed
A request has be made for details of an object where the object is not present in the repository
NotFoundException(String) - Constructor for exception uk.ac.ic.doc.automed.NotFoundException
Creates an NotFoundException when there has been no Exception that caused the error to discovered.
NotFoundException(String, Exception) - Constructor for exception uk.ac.ic.doc.automed.NotFoundException
Creates an NotFoundException when it is acting as a wrapper for other Exceptions.
notifyListeners(String, IQueryCache) - Static method in class uk.ac.ic.doc.automed.qproc.cache.CacheManager
 
notifyListeners(Cacheable) - Method in class uk.ac.ic.doc.automed.qproc.cache.DefaultQueryCache
Notify listeners to handle a specific event
notifyListeners(Cacheable) - Method in interface uk.ac.ic.doc.automed.util.cache.Cacheable
Notify listeners to handle a specific event
NotImplementedException - Exception in uk.ac.ic.doc.automed
Some part of the AutoMed code that should present has not yet been implemented..
NotImplementedException() - Constructor for exception uk.ac.ic.doc.automed.NotImplementedException
Creates an NotImplementedException with no message
NotImplementedException(String) - Constructor for exception uk.ac.ic.doc.automed.NotImplementedException
Creates an NotImplementedException detailing what has not been implemented! .
NotOptimisableException - Exception in uk.ac.ic.doc.automed.tml
A request for optimisatiing a pathway has been made where the pathway is not optimisable
NotOptimisableException(String) - Constructor for exception uk.ac.ic.doc.automed.tml.NotOptimisableException
Creates an NotOptimisableException when there has been no Exception that caused the error to discovered.
NotOptimisableException(String, Exception) - Constructor for exception uk.ac.ic.doc.automed.tml.NotOptimisableException
Creates an NotOptimisableException when it is acting as a wrapper for other Exceptions.
NotProcessed(SchemaObject) - Method in class uk.ac.ic.doc.automed.editor.layout.RootLayout
 
nul - Static variable in class uk.ac.ic.doc.automed.reps.Syntax.Token
 
NULL_CONSTRAINT - Static variable in class uk.ac.ic.doc.automed.wrappers.SQLWrapperFactory
A feature option to model the null/notnull distinction as part of a column in any Schema the factory generates
NULL_ID - Static variable in class uk.ac.ic.doc.automed.reps.Transformation
 
NULL_STR - Static variable in class uk.ac.ic.doc.automed.wrappers.AutoMedType
String to use to represent null values
NULL_STRING - Static variable in class uk.ac.ic.doc.automed.p2p.protocol.P2PConstants
Null string
NULL_VALUE - Static variable in class uk.ac.ic.doc.rodex.qproc.QualityIndicator
 
NULL_VALUE - Static variable in class uk.ac.ic.doc.rodex.qproc.QueryDescription
 
nullAction(Gui, Object[]) - Static method in class uk.ac.ic.doc.automed.editor.Gui
 
NUM - Static variable in class uk.ac.ic.doc.automed.matching.SchemaElement
 
NUM_AUTOMED_TREES - Static variable in class uk.ac.ic.doc.automed.p2p.protocol.P2PConstants
 
NUM_ITEMS - Static variable in class uk.ac.ic.doc.automed.p2p.protocol.P2PConstants
 
NUMBER - Static variable in class uk.ac.bbk.dcs.automed.qproc.iql.TypeConstants
 
NUMBER - Static variable in interface uk.ac.bbk.dcs.automed.qproc.translators.xquery.XQuery2IQLConstants
 
number - Static variable in class uk.ac.ic.doc.automed.reps.Syntax.Token
 
NumberInstancesModule - Class in uk.ac.ic.doc.automed.matching.modules.bidirectionalmap
The module that compares the number of instances of the schema elements
NumberInstancesModule(ArrayList, ArrayList) - Constructor for class uk.ac.ic.doc.automed.matching.modules.bidirectionalmap.NumberInstancesModule
Constructs a NumberInstancesModule to compare the specified schema elements in the input lists.
NumberInstancesModule(SchemaElement[], SchemaElement[]) - Constructor for class uk.ac.ic.doc.automed.matching.modules.bidirectionalmap.NumberInstancesModule
Constructs a NumberInstancesModule to compare the specified schema elements in the input arrays.
NumberInstancesModule(SchemaElementPair[]) - Constructor for class uk.ac.ic.doc.automed.matching.modules.bidirectionalmap.NumberInstancesModule
 
NumberInstancesModule - Class in uk.ac.ic.doc.automed.matching.modules.intervals
The module that compares the number of instances of the schema elements
NumberInstancesModule(ArrayList, ArrayList) - Constructor for class uk.ac.ic.doc.automed.matching.modules.intervals.NumberInstancesModule
Constructs a NumberInstancesModule to compare the specified schema elements in the input lists.
NumberInstancesModule(SchemaElement[], SchemaElement[]) - Constructor for class uk.ac.ic.doc.automed.matching.modules.intervals.NumberInstancesModule
Constructs a NumberInstancesModule to compare the specified schema elements in the input arrays.
NumberInstancesModule(SchemaElementPair[]) - Constructor for class uk.ac.ic.doc.automed.matching.modules.intervals.NumberInstancesModule
 
NumberInstancesModule - Class in uk.ac.ic.doc.automed.matching.modules.probability.senary
The module that compares the number of instances of the schema elements
NumberInstancesModule(ArrayList, ArrayList) - Constructor for class uk.ac.ic.doc.automed.matching.modules.probability.senary.NumberInstancesModule
Constructs a NumberInstancesModule to compare the specified schema elements in the input lists.
NumberInstancesModule(SchemaElement[], SchemaElement[]) - Constructor for class uk.ac.ic.doc.automed.matching.modules.probability.senary.NumberInstancesModule
Constructs a NumberInstancesModule to compare the specified schema elements in the input arrays.
NumberInstancesModule(SchemaElementPair[]) - Constructor for class uk.ac.ic.doc.automed.matching.modules.probability.senary.NumberInstancesModule
 
numberOfRowsInResultSet(ResultSet) - Method in class uk.ac.bbk.dcs.automed.hdmstore.HdmStore
Given a result set - how many rows are in it?
NumberToolkit - Class in uk.ac.ic.doc.automed.util
NumberToolkit.java Deals with number manipulation
NUMCHAR - Static variable in class uk.ac.ic.doc.automed.matching.SchemaElement
 
numOfInstances() - Method in class uk.ac.ic.doc.automed.matching.SchemaElement
Returns the number of distinct instances of this object.
NUMTOKEN - Static variable in interface uk.ac.bbk.dcs.automed.qproc.annotate.grammars.schemes.SchemesConstants
 
NUMTOKEN - Static variable in interface uk.ac.bbk.dcs.automed.qproc.annotate.grammars.simpleComp.SimpleCompConstants
 
NUMTOKEN - Static variable in interface uk.ac.bbk.dcs.automed.qproc.annotate.grammars.simpleCompAppend.SimpleCompAppendConstants
 
NUMTOKEN - Static variable in interface uk.ac.bbk.dcs.automed.qproc.annotate.grammars.simpleCompAppendMonus.SimpleCompAppendMonusConstants
 
numWorkers - Variable in class uk.ac.ic.doc.automed.p2p.communication.AbstractServer
 
nval - Variable in class uk.ac.ic.doc.automed.reps.Syntax.Token
 
NXDBSchemaManager - Class in uk.ac.bbk.dcs.automed.xml.wrappers
XMLDSS schemas for Native XML Databases are managed by this class.
NXDBSchemaManager() - Constructor for class uk.ac.bbk.dcs.automed.xml.wrappers.NXDBSchemaManager
 
NXDBWrapper - Class in uk.ac.bbk.dcs.automed.xml.wrappers
Class Task Description
NXDBWrapperFactory - Class in uk.ac.bbk.dcs.automed.xml.wrappers
Class Task Description
NXDBWrapperFactory() - Constructor for class uk.ac.bbk.dcs.automed.xml.wrappers.NXDBWrapperFactory
 

O

OBJECT - Static variable in class uk.ac.ic.doc.automed.p2p.tree.TreeNode
 
OBJECT - Static variable in interface uk.ac.ic.doc.automed.xml.XMLifyConstants
 
OBJECT_ADDED - Static variable in class uk.ac.ic.doc.automed.reps.SchemaChangeEvent
 
OBJECT_CHANGED - Static variable in class uk.ac.ic.doc.automed.reps.SchemaChangeEvent
 
OBJECT_CHILDREN - Static variable in interface uk.ac.ic.doc.automed.xml.XMLifyConstants
 
OBJECT_CHILDREN_RECURSE - Static variable in interface uk.ac.ic.doc.automed.xml.XMLifyConstants
 
OBJECT_DEFINITION - Static variable in class uk.ac.ic.doc.automed.p2p.tree.TreeNode
 
OBJECT_LIST - Static variable in class uk.ac.ic.doc.automed.p2p.tree.TreeNode
 
OBJECT_MEMBER - Static variable in interface uk.ac.ic.doc.automed.xml.XMLifyConstants
 
OBJECT_MEMBER_AND_CHILDREN - Static variable in interface uk.ac.ic.doc.automed.xml.XMLifyConstants
 
OBJECT_MEMBER_RECURSE - Static variable in interface uk.ac.ic.doc.automed.xml.XMLifyConstants
 
OBJECT_REMOVED - Static variable in class uk.ac.ic.doc.automed.reps.SchemaChangeEvent
 
objectAdded(SchemaChangeEvent) - Method in class uk.ac.ic.doc.automed.editor.Gui.EditorFrame
 
objectAdded(SchemaChangeEvent) - Method in interface uk.ac.ic.doc.automed.reps.SchemaChangeListener
 
ObjectBuilder - Class in uk.ac.ic.doc.automed.p2p.tree
 
ObjectBuilder(Root) - Constructor for class uk.ac.ic.doc.automed.p2p.tree.ObjectBuilder
 
objectChanged(SchemaChangeEvent) - Method in class uk.ac.ic.doc.automed.editor.Gui.EditorFrame
 
objectChanged(SchemaChangeEvent) - Method in interface uk.ac.ic.doc.automed.reps.SchemaChangeListener
 
ObjectCollection - Class in uk.ac.ic.doc.automed.p2p.tree
 
ObjectCollection(Class) - Constructor for class uk.ac.ic.doc.automed.p2p.tree.ObjectCollection
 
objectRemoved(SchemaChangeEvent) - Method in class uk.ac.ic.doc.automed.editor.Gui.EditorFrame
 
objectRemoved(SchemaChangeEvent) - Method in interface uk.ac.ic.doc.automed.reps.SchemaChangeListener
 
objectToEntry(Object, TupleOutput) - Method in class uk.ac.ic.doc.automed.qproc.cache.CacheObjectBinding
Write a CachItem object to a persistent database
objectToEntry(Object, TupleOutput) - Method in class uk.ac.ic.doc.automed.util.persist.AbstractObjectBinding
Converts a key or data object to a tuple entry.
ObjectToolKit - Class in uk.ac.ic.doc.automed.util
ObjectToolKit.java
offset(int, int, int, int, int, int) - Static method in class uk.ac.ic.doc.automed.editor.autolayout.AutoLayoutTreeObject
Calculates the offset for specified points.
okToAddEdge(Edge) - Method in class uk.ac.bbk.dcs.automed.hdmstore.HdmStore
Given an Edge is it OK to add the edge e.g.
OldQueryProcessor - Class in uk.ac.bbk.dcs.automed.qproc
The query processor class.
OldQueryProcessor() - Constructor for class uk.ac.bbk.dcs.automed.qproc.OldQueryProcessor
Constructs a QueryProcessor using QueryProcessorConfiguration.
OldQueryProcessor(QueryProcessorConfiguration) - Constructor for class uk.ac.bbk.dcs.automed.qproc.OldQueryProcessor
Constructs a QueryProcessor using the input configuration.
OldQueryProcessor(Schema, Schema[]) - Constructor for class uk.ac.bbk.dcs.automed.qproc.OldQueryProcessor
 
OldQueryProcessor(Schema, Schema[], QueryProcessorConfiguration) - Constructor for class uk.ac.bbk.dcs.automed.qproc.OldQueryProcessor
Constructs a QueryProcessor using the input configuration.
oldRetract() - Method in class uk.ac.ic.doc.automed.reps.Schema
 
ONEPASS - Static variable in interface uk.ac.ic.doc.automed.xml.XMLifyConstants
 
openMainWindow() - Static method in class uk.ac.ic.doc.automed.editor.Gui
Open/reopen the main window of the Gui, containing initially a network editor window
openMainWindow(PeerApplication) - Static method in class uk.ac.ic.doc.rodex.p2p.gui.GuiApplication
Open/reopen the main window of the Gui, containing initially a network editor window
openScheme - Static variable in class uk.ac.ic.doc.automed.reps.Syntax.Token
 
openTag(String) - Method in class uk.ac.ic.doc.automed.xml.XMLWriter
Opening a tag will finish off the opening phase of the previously opend tag if it is still in the opening phase.
operateOnCache(Cacheable) - Method in interface uk.ac.ic.doc.automed.util.cache.CacheListener
A generic method to operate on cache object when notified
OPERATION - Static variable in class uk.ac.ic.doc.automed.p2p.protocol.P2PConstants
 
OPT_DELETE - Static variable in class uk.ac.ic.doc.rodex.p2p.messages.applicationlayer.SchemaAccessibility
 
OPT_HELLO - Static variable in class uk.ac.ic.doc.automed.p2p.Constants
Messaging type: hello protocol
OPT_KEEP_ALIVE - Static variable in class uk.ac.ic.doc.automed.p2p.Constants
Messaging type: keep-alive
OPT_LOGGING - Static variable in class uk.ac.ic.doc.automed.p2p.Constants
Messaging type: logging
OPT_READ - Static variable in class uk.ac.ic.doc.rodex.p2p.messages.applicationlayer.SchemaAccessibility
 
OPT_UNREGISTER - Static variable in class uk.ac.ic.doc.automed.p2p.Constants
Messaging type: unregistering client from registry and server
OPT_UPDATE_DATA - Static variable in class uk.ac.ic.doc.automed.p2p.Constants
Messaging type: data update with directory server
OPT_WRITE - Static variable in class uk.ac.ic.doc.rodex.p2p.messages.applicationlayer.SchemaAccessibility
 
optimise(ASG) - Method in class uk.ac.bbk.dcs.automed.qproc.optimise.ExperimentalOptimisationProvider
 
optimise(Cell) - Method in class uk.ac.bbk.dcs.automed.qproc.optimise.optimisers.ChooseOptimiser
 
optimise(Cell) - Method in class uk.ac.bbk.dcs.automed.qproc.optimise.optimisers.CollectionOperatorReorganiser
 
optimise(Cell) - Method in class uk.ac.bbk.dcs.automed.qproc.optimise.optimisers.ComprehensionDistributor
 
optimise(Cell) - Method in class uk.ac.bbk.dcs.automed.qproc.optimise.optimisers.ComprehensionSimplification
 
optimise(Cell) - Method in class uk.ac.bbk.dcs.automed.qproc.optimise.optimisers.ConstantSimplification
 
optimise(ASG) - Method in class uk.ac.bbk.dcs.automed.qproc.optimise.PhysicalOptimiser
 
optimise(ASG, QueryProcessorConfiguration) - Method in class uk.ac.bbk.dcs.automed.qproc.optimise.StandardOptimisationProvider
 
optimise(ASG, QueryProcessorConfiguration) - Method in interface uk.ac.ic.doc.automed.qproc.opti.QueryOptimisationProvider
Optimise an IQL query based on a given configuration
optimiseAdvanced(Object[]) - Static method in class uk.ac.ic.doc.automed.editor.PathwayOptimiserTool
 
optimisedQuery - Variable in class uk.ac.ic.doc.automed.editor.IQLTool
 
optimisePathway(Pathway, int) - Static method in class uk.ac.ic.doc.automed.tml.PathwayOptimiser
 
optimisePathway(Pathway, boolean, int) - Static method in class uk.ac.ic.doc.automed.tml.PathwayOptimiser
 
optimisePathway(Pathway, boolean, PathwayOptimiserTool, int) - Static method in class uk.ac.ic.doc.automed.tml.PathwayOptimiser
 
OPTION_SCHEMA_NAME - Static variable in class uk.ac.ic.doc.automed.wrappers.SQLWrapper
An option key setting, the value of which should be the SQL schema which is the only one to be mapped in this wrapping
OPTIONAL - Static variable in class uk.ac.ic.doc.automed.editor.CommandLineDriver
 
optionKeyProtection - Variable in class uk.ac.ic.doc.automed.wrappers.AutoMedWrapper
 
optionKeys - Variable in class uk.ac.ic.doc.automed.wrappers.AutoMedWrapper
 
optionsMenu - Variable in class uk.ac.ic.doc.automed.editor.Gui
 
OpToken - Static variable in class uk.ac.bbk.dcs.automed.qproc.iql.QSym
 
Or - Class in uk.ac.bbk.dcs.automed.qproc.functions.logical
 
Or() - Constructor for class uk.ac.bbk.dcs.automed.qproc.functions.logical.Or
 
OR - Static variable in interface uk.ac.bbk.dcs.automed.qproc.translators.xquery.XQuery2IQLConstants
 
OR - Static variable in class uk.ac.ic.doc.automed.wrappers.SQLQuery
SQL logical OR binary operator for use within WHERE expressions
oracle - Static variable in class uk.ac.bbk.dcs.automed.xml.relational.XMLDSSFromRDB
 
OracleWrapper - Class in uk.ac.ic.doc.automed.wrappers
A lower level wrapper for the conforming to the AutoMed SQL high level wrapper for Oracle SQL databases.
OracleWrapper(AccessMethod, String) - Constructor for class uk.ac.ic.doc.automed.wrappers.OracleWrapper
Generate a new wrapper instance from information held in the repository about how to access a data source.
OracleWrapperFactory - Class in uk.ac.ic.doc.automed.wrappers
A lower level wrapper factory for Oracle SQL databases conforming to the AutoMed SQL high level wrapper factory.
OracleWrapperFactory() - Constructor for class uk.ac.ic.doc.automed.wrappers.OracleWrapperFactory
 
OrderPreservedHashing - Class in uk.ac.ic.doc.automed.util.hashing
OrderPreservedHashing.java Hashes a string but preserves the order, i.e.
OrderPreservedHashing() - Constructor for class uk.ac.ic.doc.automed.util.hashing.OrderPreservedHashing
Creates a new instance of StructurePreservedHashing
originalSchema - Variable in class uk.ac.bbk.dcs.automed.evolution.schemaModelEvolution.SMEvolution
 
otherPeers - Variable in class uk.ac.ic.doc.automed.p2p.PeerCache
 
output(String) - Method in class uk.ac.ic.doc.automed.reps.XMLSchemaOutputter
Write the output string to a file
output() - Method in class uk.ac.ic.doc.automed.reps.XMLSchemaOutputter
 
output(String[]) - Method in class uk.ac.ic.doc.automed.util.LogOutputHandler
Write log message to normal log file.
output() - Method in class uk.ac.ic.doc.automed.xmlschema.output.XMLOutputter
Return a string containing the XML that this Schema represents
output(String) - Method in class uk.ac.ic.doc.automed.xmlschema.output.XMLOutputter
Output the XML that this Schema represents to fileName
output(String, Document) - Method in class uk.ac.ic.doc.automed.xmlschema.output.XMLSchemaOutputter
Write the output string to a file
output(Document) - Method in class uk.ac.ic.doc.automed.xmlschema.output.XMLSchemaOutputter
 
OUTPUT_SOCKET - Static variable in class uk.ac.ic.doc.automed.p2p.communication.ResponseHandler
 
OUTPUT_STREAM - Static variable in class uk.ac.ic.doc.automed.p2p.communication.ResponseHandler
 
outputConfirm(String, OutputStream) - Static method in class uk.ac.ic.doc.automed.p2p.util.Util
Only works with TCP protocol
outputConfirm(String, ResponseHandler) - Static method in class uk.ac.ic.doc.automed.p2p.util.Util
Serialise output through a handler object rather than through direct manipulation
of physical output streams
outputConfirm(String, Map, OutputStream) - Static method in class uk.ac.ic.doc.automed.p2p.util.Util
An overloading method of #outputConfirm() to output a confirmation message with optional content data
outputConfirm(String, Map, ResponseHandler) - Static method in class uk.ac.ic.doc.automed.p2p.util.Util
 
outputError(String[], Throwable) - Method in class uk.ac.ic.doc.automed.util.LogOutputHandler
Write errors to error log file.
outputErrorMessage(AbstractMessage, OutputStream) - Static method in class uk.ac.ic.doc.automed.p2p.util.Util
Only works with TCP protocol
outputErrorMessage(AbstractMessage, ResponseHandler) - Static method in class uk.ac.ic.doc.automed.p2p.util.Util
Serialise output through a handler object rather than through direct manipulation
of physical output streams
outputErrorMessage(AbstractMessage, String, OutputStream) - Static method in class uk.ac.ic.doc.automed.p2p.util.Util
Only works with TCP protocol
outputErrorMessage(AbstractMessage, String, ResponseHandler) - Static method in class uk.ac.ic.doc.automed.p2p.util.Util
Serialise output through a handler object rather than through direct manipulation
of physical output streams
outputFailMessage(AbstractMessage, String, OutputStream) - Static method in class uk.ac.ic.doc.automed.p2p.util.Util
Only works with TCP protocol
outputFailMessage(AbstractMessage, OutputStream) - Static method in class uk.ac.ic.doc.automed.p2p.util.Util
Only works with TCP protocol
outputFailMessage(AbstractMessage, String, ResponseHandler) - Static method in class uk.ac.ic.doc.automed.p2p.util.Util
Serialise output through a handler object rather than through direct manipulation
of physical output streams
outputFailMessage(AbstractMessage, ResponseHandler) - Static method in class uk.ac.ic.doc.automed.p2p.util.Util
Serialise output through a handler object rather than through direct manipulation
of physical output streams
outputPathway(AbstractMessage, ResponseHandler) - Method in class uk.ac.ic.doc.automed.p2p.AutoMedPeer
 
outputPathwayToSource(AbstractMessage, ResponseHandler) - Method in class uk.ac.ic.doc.automed.p2p.AutoMedPeer
Deprecated. use #outputSourcePathways(AbstractMessage request, OutputStream output)
to get multiple pathways
outputQuery(AbstractMessage, ResponseHandler) - Method in class uk.ac.ic.doc.automed.p2p.AutoMedPeer
Use QEP protocol to execute the query
outputQuery(AbstractMessage, ResponseHandler) - Method in class uk.ac.ic.doc.rodex.p2p.Peer
Execute query using QEP protocol
outputRelational(Gui, Object[]) - Static method in class uk.ac.ic.doc.automed.editor.Gui
Materialises an SQL schema
outputSchema(AbstractMessage, ResponseHandler) - Method in class uk.ac.ic.doc.automed.p2p.AutoMedPeer
 
outputSourcePathways(AbstractMessage, ResponseHandler) - Method in class uk.ac.ic.doc.automed.p2p.AutoMedPeer
Output all possible pathways to all data sources attached to a given
public schema
outputUnsuccessfulMessage(AbstractMessage, String, String, OutputStream) - Static method in class uk.ac.ic.doc.automed.p2p.util.Util
Deprecated. use Util.outputUnsuccessfulMessage(AbstractMessage request, String message, String performative, ResponseHandler output) instead
outputUnsuccessfulMessage(AbstractMessage, String, String, ResponseHandler) - Static method in class uk.ac.ic.doc.automed.p2p.util.Util
Serialise output through a handler object rather than through direct manipulation
of physical output streams
outputXMLSchema(Gui, Object[]) - Static method in class uk.ac.ic.doc.automed.editor.Gui
Materialises an XML Schema
overFunction(double) - Method in class uk.ac.ic.doc.automed.matching.BidirectionalDegree
Returns true if the following is true: forward+backward-c>=0
Overlapness - Class in uk.ac.ic.doc.automed.matching.relationships
The Overlapness class represent the overlapness semantic relationship between SchemaElement objects.
overlaps - Variable in class uk.ac.ic.doc.automed.matching.Integrator
 
OverlayController - Class in uk.ac.ic.doc.automed.p2p.overlay
OverlayController.java

The main class reponsible for establishing a new [contacting an existing] overlay network.
OverlayException - Exception in uk.ac.ic.doc.automed.p2p.overlay
OverlayException.java

OverlayException(String, Throwable) - Constructor for exception uk.ac.ic.doc.automed.p2p.overlay.OverlayException
Creates a new instance of PersistentDBException
OverlayException(String) - Constructor for exception uk.ac.ic.doc.automed.p2p.overlay.OverlayException
 
OverlayToolKit - Class in uk.ac.ic.doc.automed.p2p.overlay
OverlayToolKit.java

A collection of utility methods

P

p - Variable in class uk.ac.ic.doc.automed.editor.DrawArc
 
p - Variable in class uk.ac.ic.doc.automed.editor.DrawVertex
 
p - Variable in class uk.ac.ic.doc.automed.xmlschema.tree.TreeDropTarget
 
p2pCloseMenuItem - Variable in class uk.ac.ic.doc.automed.editor.Gui
 
P2PConstants - Class in uk.ac.ic.doc.automed.p2p.protocol
This class supplies the names of various fields and tables used in the AutoMed system, plus "psuedo constants" readin from the P2P configuration file
P2PConstants() - Constructor for class uk.ac.ic.doc.automed.p2p.protocol.P2PConstants
 
P2PDirectory - Class in uk.ac.ic.doc.automed.p2p.directory
 
p2pDirectoryMenuItem - Variable in class uk.ac.ic.doc.automed.editor.Gui
 
P2PDirectoryObject - Interface in uk.ac.ic.doc.automed.p2p.directory
 
P2PDirectoryRepository - Class in uk.ac.ic.doc.automed.p2p.directory
 
P2PException - Exception in uk.ac.ic.doc.automed.p2p
 
P2PException() - Constructor for exception uk.ac.ic.doc.automed.p2p.P2PException
 
P2PException(String) - Constructor for exception uk.ac.ic.doc.automed.p2p.P2PException
 
P2PException(Throwable) - Constructor for exception uk.ac.ic.doc.automed.p2p.P2PException
 
P2PException(String, Throwable) - Constructor for exception uk.ac.ic.doc.automed.p2p.P2PException
 
P2PGui - Class in uk.ac.ic.doc.automed.p2p.gui
Various dialogue boxes for the PeerApplication to use when informing a user of the result of operations.
P2PGui() - Constructor for class uk.ac.ic.doc.automed.p2p.gui.P2PGui
 
p2pLoginMenuItem - Variable in class uk.ac.ic.doc.automed.editor.Gui
 
p2pMenu - Variable in class uk.ac.ic.doc.automed.editor.Gui
 
P2PProtocol - Class in uk.ac.ic.doc.automed.p2p.protocol
 
P2PProtocol() - Constructor for class uk.ac.ic.doc.automed.p2p.protocol.P2PProtocol
 
P2PQueryEvaluator - Class in uk.ac.ic.doc.automed.qproc.eval
ConstraintEvaluator.java
P2PQueryEvaluator(QueryProcessorConfiguration) - Constructor for class uk.ac.ic.doc.automed.qproc.eval.P2PQueryEvaluator
 
P2PQueryEvaluator(FunctionTable) - Constructor for class uk.ac.ic.doc.automed.qproc.eval.P2PQueryEvaluator
Deprecated. use #Evaluator(QueryProcessorConfiguration) instead
P2PQueryEvaluator(FunctionTable, int) - Constructor for class uk.ac.ic.doc.automed.qproc.eval.P2PQueryEvaluator
Deprecated. use #Evaluator(QueryProcessorConfiguration) instead
P2PQueryProcessorConfiguration - Class in uk.ac.ic.doc.automed.qproc
QueryProcessingConfiguration.java A global configuration class that encapsulates different aspects of a query processing 'process'
Each phase in query processing can provide their own configuration class as long as it extends this class.
P2PQueryProcessorConfiguration() - Constructor for class uk.ac.ic.doc.automed.qproc.P2PQueryProcessorConfiguration
Creates a new instance of QueryProcessingConfiguration
P2PRegistry - Class in uk.ac.ic.doc.automed.p2p
 
P2PWrapper - Class in uk.ac.ic.doc.automed.wrappers
Use the AutoMed P2P package to access other AutoMed repositories (called peers) that contain a common schema.
P2PWrapper() - Constructor for class uk.ac.ic.doc.automed.wrappers.P2PWrapper
 
P2PWrapper(AccessMethod, String) - Constructor for class uk.ac.ic.doc.automed.wrappers.P2PWrapper
 
P2PWrapperFactory - Class in uk.ac.ic.doc.automed.wrappers
A wrapper factory for P2P communication with other AutoMed repositories
P2PWrapperFactory() - Constructor for class uk.ac.ic.doc.automed.wrappers.P2PWrapperFactory
 
PACKET_SIZE - Static variable in class uk.ac.ic.doc.automed.p2p.Constants
Send buffer sized for clients
paint(Graphics2D) - Method in class uk.ac.ic.doc.automed.editor.drawables.YattaDrawLinkNodalLink
Draw a Yatta Arc by linking all parents to child
paint(Graphics2D) - Method in class uk.ac.ic.doc.automed.editor.drawables.YattaDrawSequence
Modify the basic drawing of arcs to set the arc colour based on the foreground colour of the first positionable connected
paintChildren(Graphics) - Method in class uk.ac.ic.doc.automed.editor.EditorPanel
Paint the arcs within this panel.
paintComponent(Graphics2D) - Method in class uk.ac.ic.doc.automed.editor.DefaultDrawConstraintArc
 
paintComponent(Graphics2D) - Method in class uk.ac.ic.doc.automed.editor.DefaultDrawLinkArc
Modify the basic drawing of arcs to set the arc colour based on the foreground colour of the first positionable connected
paintComponent(Graphics2D) - Method in class uk.ac.ic.doc.automed.editor.DefaultDrawLinkNodalArc
Choose the colour to be that which the first connected Positionable is drawn in
paintComponent(Graphics2D) - Method in interface uk.ac.ic.doc.automed.editor.Drawable
 
paintComponent(Graphics2D) - Method in class uk.ac.ic.doc.automed.editor.drawables.DrawAMRDBForeignKeyArc
Modify the basic drawing of arcs to set the arc colour based on the foreground colour of the first positionable connected
paintComponent(Graphics2D) - Method in class uk.ac.ic.doc.automed.editor.drawables.DrawAMRDBPrimaryKeyArc
Modify the basic drawing of arcs to set the arc colour based on the foreground colour of the first positionable connected
paintComponent(Graphics2D) - Method in class uk.ac.ic.doc.automed.editor.drawables.DrawERGeneralisationArc
 
paintComponent(Graphics2D) - Method in class uk.ac.ic.doc.automed.editor.drawables.DrawERRelationshipArc
 
paintComponent(Graphics2D) - Method in class uk.ac.ic.doc.automed.editor.drawables.DrawHDMArc
 
paintComponent(Graphics2D) - Method in class uk.ac.ic.doc.automed.editor.drawables.DrawRDBForeignKeyArc
Modify the basic drawing of arcs to set the arc colour based on the foreground colour of the first positionable connected
paintComponent(Graphics2D) - Method in class uk.ac.ic.doc.automed.editor.drawables.DrawRDBForeignKeyVertex
Modify the basic drawing of arcs to set the arc colour based on the foreground colour of the first positionable connected
paintComponent(Graphics2D) - Method in class uk.ac.ic.doc.automed.editor.drawables.DrawRDBPrimaryKeyArc
Modify the basic drawing of arcs to set the arc colour based on the foreground colour of the first positionable connected
paintComponent(Graphics2D) - Method in class uk.ac.ic.doc.automed.editor.drawables.DrawRDBPrimaryKeyVertex
Modify the basic drawing of arcs to set the arc colour based on the foreground colour of the first positionable connected
paintComponent(Graphics2D) - Method in class uk.ac.ic.doc.automed.editor.drawables.DrawRDBTableVertex
Modify the basic drawing of arcs to set the arc colour based on the foreground colour of the first positionable connected
paintComponent(Graphics2D) - Method in class uk.ac.ic.doc.automed.editor.drawables.DrawUMLAssociationArc
 
paintComponent(Graphics2D) - Method in class uk.ac.ic.doc.automed.editor.drawables.DrawUMLAssociationVertex
An association is only a line between classes so don't draw anything here
paintComponent(Graphics2D) - Method in class uk.ac.ic.doc.automed.editor.drawables.DrawUMLAttributeArc
 
paintComponent(Graphics2D) - Method in class uk.ac.ic.doc.automed.editor.drawables.DrawUMLAttributeVertex
 
paintComponent(Graphics2D) - Method in class uk.ac.ic.doc.automed.editor.drawables.DrawUMLGeneralisationArc
Draw a line with an arrow on the end from each subclass to the superclass
paintComponent(Graphics2D) - Method in class uk.ac.ic.doc.automed.editor.drawables.DrawUMLGeneralisationVertex
A generalisation is only a line between classes so don't draw anything here
paintComponent(Graphics2D) - Method in class uk.ac.ic.doc.automed.editor.drawables.DrawXSArc
 
paintComponent(Graphics2D) - Method in class uk.ac.ic.doc.automed.editor.DrawArc
 
paintComponent(Graphics2D) - Method in class uk.ac.ic.doc.automed.editor.DrawTransformation
 
paintComponent(Graphics2D) - Method in class uk.ac.ic.doc.automed.editor.DrawVertex
This simply paints the symbol and the text
paintComponent(Graphics) - Method in class uk.ac.ic.doc.automed.editor.EditorPanel
Paint the nodes within this panel.
paintSymbol(Graphics2D) - Method in class uk.ac.ic.doc.automed.editor.DefaultDrawConstraintVertex
Draw a rounded box to represent a constraint
paintSymbol(Graphics2D) - Method in class uk.ac.ic.doc.automed.editor.DefaultDrawLinkNodalVertex
Draw a circle to represent the attribute vertex
paintSymbol(Graphics2D) - Method in class uk.ac.ic.doc.automed.editor.DefaultDrawLinkVertex
 
paintSymbol(Graphics2D) - Method in class uk.ac.ic.doc.automed.editor.DefaultDrawNodalVertex
Replace the paintSymbol method of DrawVertex with one that draws a rectangle rather that a oval.
paintSymbol(Graphics2D) - Method in class uk.ac.ic.doc.automed.editor.drawables.DrawERGeneralisationVertex
Replace the paintSymbol with one that draws an irregular hexagon
paintSymbol(Graphics2D) - Method in class uk.ac.ic.doc.automed.editor.drawables.DrawERRelationshipVertex
Draw a diamond instead of the standard ellipse.
paintSymbol(Graphics2D) - Method in class uk.ac.ic.doc.automed.editor.drawables.DrawRDBForeignKeyVertex
 
paintSymbol(Graphics2D) - Method in class uk.ac.ic.doc.automed.editor.drawables.DrawUMLClassVertex
 
paintSymbol(Graphics2D) - Method in class uk.ac.ic.doc.automed.editor.DrawNetwork
 
paintSymbol(Graphics2D) - Method in class uk.ac.ic.doc.automed.editor.DrawVertex
The default implementation of paintSymbol for a vertex, an elipse with a black forground and white background
paintText(Graphics2D) - Method in class uk.ac.ic.doc.automed.editor.DefaultDrawLinkNodalVertex
 
paintText(Graphics2D) - Method in class uk.ac.ic.doc.automed.editor.drawables.DrawEERAttributeVertex
 
paintText(Graphics2D) - Method in class uk.ac.ic.doc.automed.editor.drawables.DrawRDBForeignKeyVertex
 
paintText(Graphics2D) - Method in class uk.ac.ic.doc.automed.editor.drawables.DrawRDBTableVertex
 
paintText(Graphics2D) - Method in class uk.ac.ic.doc.automed.editor.drawables.DrawUMLClassVertex
 
paintText(Graphics2D) - Method in class uk.ac.ic.doc.automed.editor.DrawNetwork
 
paintText(Graphics2D) - Method in class uk.ac.ic.doc.automed.editor.DrawVertex
The default implementation of paintText for a vertex puts the text in the middle of the symbol
PairFirst - Class in uk.ac.bbk.dcs.automed.qproc.functions
 
PairFirst() - Constructor for class uk.ac.bbk.dcs.automed.qproc.functions.PairFirst
 
PairSecond - Class in uk.ac.bbk.dcs.automed.qproc.functions
 
PairSecond() - Constructor for class uk.ac.bbk.dcs.automed.qproc.functions.PairSecond
 
parent - Variable in class uk.ac.ic.doc.automed.p2p.tree.TreeNode
 
parent - Variable in class uk.ac.ic.doc.automed.wrappers.xsdomobject.XSDOMObject
Object parent
parentTranslator - Variable in class uk.ac.bbk.dcs.automed.wrappers.IQLTranslator
 
parse() - Method in class uk.ac.bbk.dcs.automed.qproc.annotate.grammars.QueryParser
 
parse() - Method in class uk.ac.bbk.dcs.automed.qproc.annotate.grammars.schemes.Schemes
 
parse() - Method in class uk.ac.bbk.dcs.automed.qproc.annotate.grammars.simpleComp.SimpleComp
 
parse() - Method in class uk.ac.bbk.dcs.automed.qproc.annotate.grammars.simpleCompAppend.SimpleCompAppend
 
parse() - Method in class uk.ac.bbk.dcs.automed.qproc.annotate.grammars.simpleCompAppendMonus.SimpleCompAppendMonus
 
parse() - Method in class uk.ac.bbk.dcs.automed.qproc.translators.xquery.XQuery2IQL
 
parseASG(String) - Static method in class uk.ac.ic.doc.rodex.qproc.ASGExplore
Parse ASGs into variables
ParseException - Exception in uk.ac.bbk.dcs.automed.qproc.annotate.grammars.schemes
This exception is thrown when parse errors are encountered.
ParseException(Token, int[][], String[]) - Constructor for exception uk.ac.bbk.dcs.automed.qproc.annotate.grammars.schemes.ParseException
This constructor is used by the method "generateParseException" in the generated parser.
ParseException() - Constructor for exception uk.ac.bbk.dcs.automed.qproc.annotate.grammars.schemes.ParseException
The following constructors are for use by you for whatever purpose you can think of.
ParseException(String) - Constructor for exception uk.ac.bbk.dcs.automed.qproc.annotate.grammars.schemes.ParseException
 
ParseException - Exception in uk.ac.bbk.dcs.automed.qproc.annotate.grammars.simpleComp
This exception is thrown when parse errors are encountered.
ParseException(Token, int[][], String[]) - Constructor for exception uk.ac.bbk.dcs.automed.qproc.annotate.grammars.simpleComp.ParseException
This constructor is used by the method "generateParseException" in the generated parser.
ParseException() - Constructor for exception uk.ac.bbk.dcs.automed.qproc.annotate.grammars.simpleComp.ParseException
The following constructors are for use by you for whatever purpose you can think of.
ParseException(String) - Constructor for exception uk.ac.bbk.dcs.automed.qproc.annotate.grammars.simpleComp.ParseException
 
ParseException - Exception in uk.ac.bbk.dcs.automed.qproc.annotate.grammars.simpleCompAppend
This exception is thrown when parse errors are encountered.
ParseException(Token, int[][], String[]) - Constructor for exception uk.ac.bbk.dcs.automed.qproc.annotate.grammars.simpleCompAppend.ParseException
This constructor is used by the method "generateParseException" in the generated parser.
ParseException() - Constructor for exception uk.ac.bbk.dcs.automed.qproc.annotate.grammars.simpleCompAppend.ParseException
The following constructors are for use by you for whatever purpose you can think of.
ParseException(String) - Constructor for exception uk.ac.bbk.dcs.automed.qproc.annotate.grammars.simpleCompAppend.ParseException
 
ParseException - Exception in uk.ac.bbk.dcs.automed.qproc.annotate.grammars.simpleCompAppendMonus
This exception is thrown when parse errors are encountered.
ParseException(Token, int[][], String[]) - Constructor for exception uk.ac.bbk.dcs.automed.qproc.annotate.grammars.simpleCompAppendMonus.ParseException
This constructor is used by the method "generateParseException" in the generated parser.
ParseException() - Constructor for exception uk.ac.bbk.dcs.automed.qproc.annotate.grammars.simpleCompAppendMonus.ParseException
The following constructors are for use by you for whatever purpose you can think of.
ParseException(String) - Constructor for exception uk.ac.bbk.dcs.automed.qproc.annotate.grammars.simpleCompAppendMonus.ParseException
 
ParseException - Exception in uk.ac.bbk.dcs.automed.qproc.iql
An exception relating to the QProc package.
ParseException(String) - Constructor for exception uk.ac.bbk.dcs.automed.qproc.iql.ParseException
 
ParseException(String, Exception) - Constructor for exception uk.ac.bbk.dcs.automed.qproc.iql.ParseException
Creates a QProcException when it is acting as a wrapper for other Exceptions.
ParseException - Exception in uk.ac.bbk.dcs.automed.qproc.translators.xquery
This exception is thrown when parse errors are encountered.
ParseException(Token, int[][], String[]) - Constructor for exception uk.ac.bbk.dcs.automed.qproc.translators.xquery.ParseException
This constructor is used by the method "generateParseException" in the generated parser.
ParseException() - Constructor for exception uk.ac.bbk.dcs.automed.qproc.translators.xquery.ParseException
The following constructors are for use by you for whatever purpose you can think of.
ParseException(String) - Constructor for exception uk.ac.bbk.dcs.automed.qproc.translators.xquery.ParseException
 
parseFile(String, boolean) - Static method in class uk.ac.bbk.dcs.automed.xml.utilities.XMLUtilities
Parses the input file and returns its DOM representation
parseFile(String) - Static method in class uk.ac.ic.doc.automed.p2p.util.Util
 
parseFile(File) - Static method in class uk.ac.ic.doc.automed.p2p.util.XmlHandler
 
parseFileNS(String, boolean) - Static method in class uk.ac.bbk.dcs.automed.xml.utilities.XMLUtilities
Parses the input file and returns its DOM representation
parseInputStream(InputStream) - Static method in class uk.ac.ic.doc.automed.p2p.util.XmlHandler
 
parseRequest(String) - Static method in class uk.ac.ic.doc.automed.p2p.protocol.P2PProtocol
 
parseString(String, boolean) - Static method in class uk.ac.bbk.dcs.automed.xml.utilities.XMLUtilities
 
parseString(String) - Static method in class uk.ac.ic.doc.automed.p2p.util.XmlHandler
 
parseStringNS(String, boolean) - Static method in class uk.ac.bbk.dcs.automed.xml.utilities.XMLUtilities
 
parts - Variable in class uk.ac.ic.doc.automed.p2p.protocol.Request.Unknown
 
PASSWORD - Static variable in class uk.ac.ic.doc.automed.p2p.protocol.P2PConstants
 
password - Variable in class uk.ac.ic.doc.automed.util.db.DBAccess
 
password - Variable in class uk.ac.ic.doc.automed.wrappers.AutoMedWrapper
 
path() - Method in class uk.ac.bbk.dcs.automed.hdmstore.Edge
Get the edge value as a path of spans
PATH - Static variable in class uk.ac.ic.doc.automed.editor.UserActionClass
 
PATHATTTOKEN - Static variable in interface uk.ac.bbk.dcs.automed.qproc.translators.xquery.XQuery2IQLConstants
 
PATHTEXTTOKEN - Static variable in interface uk.ac.bbk.dcs.automed.qproc.translators.xquery.XQuery2IQLConstants
 
PATHTOKEN - Static variable in interface uk.ac.bbk.dcs.automed.qproc.translators.xquery.XQuery2IQLConstants
 
PATHWAY - Static variable in class uk.ac.ic.doc.automed.p2p.protocol.P2PConstants
Context
Pathway - Class in uk.ac.ic.doc.automed.reps
The Pathway class
Pathway(Schema[]) - Constructor for class uk.ac.ic.doc.automed.reps.Pathway
Make this protected for sub-classes to use
PATHWAY_ABSTRACT - Static variable in class uk.ac.ic.doc.automed.p2p.protocol.P2PConstants
 
PathwayAbstraction - Class in uk.ac.ic.doc.automed.reps
PathwayAbstraction.java A sub-class of #Pathway which encapsulates only an abstraction of the transformation pathway from one schema to another.
PathwayAbstraction(String, Schema[]) - Constructor for class uk.ac.ic.doc.automed.reps.PathwayAbstraction
Creates a new instance of PathwayAbstraction
PathwayAbstractObjectBuilder - Class in uk.ac.ic.doc.automed.p2p.tree
 
PathwayAbstractObjectBuilder(Root, String, P2PDirectoryRepository) - Constructor for class uk.ac.ic.doc.automed.p2p.tree.PathwayAbstractObjectBuilder
Creates a new instance of SchemaObjectBuilder
PathwayDescription - Class in uk.ac.ic.doc.automed.p2p
 
PathwayDescription(AbstractMessage) - Constructor for class uk.ac.ic.doc.automed.p2p.PathwayDescription
Edited by dmle on 9/11/2005 to cater for cases where there are multiple sets of pathways (i.e.
PathwayDescription(String, String, String, float, String, int) - Constructor for class uk.ac.ic.doc.automed.p2p.PathwayDescription
A constructor for creating a description of an pathway abstraction
PathwayDescription(String, String, String, float, DataSource) - Constructor for class uk.ac.ic.doc.automed.p2p.PathwayDescription
Overloading constructor for creating a description of an pathway abstraction
PathwayDescriptionObjectBuilder - Class in uk.ac.ic.doc.automed.p2p.tree
 
PathwayDescriptionObjectBuilder(Root) - Constructor for class uk.ac.ic.doc.automed.p2p.tree.PathwayDescriptionObjectBuilder
Creates a new instance of SchemaObjectBuilder
PathwayFinder - Interface in uk.ac.ic.doc.automed.reps.pathway
PathwayFinder.java Abstracts the different algorithms for finding a pathway from one schema to another
PathwayFinderConfiguration - Class in uk.ac.ic.doc.automed.reps.pathway
PathwayFinderConfiguration.java
PathwayFinderConfiguration() - Constructor for class uk.ac.ic.doc.automed.reps.pathway.PathwayFinderConfiguration
Creates a new instance of PathwayFinderConfiguration
PathwayGetter - Class in uk.ac.ic.doc.automed.p2p
 
PathwayGetter(AutoMedPeer) - Constructor for class uk.ac.ic.doc.automed.p2p.PathwayGetter
 
PathwayOptimiser - Class in uk.ac.ic.doc.automed.tml
 
PathwayOptimiser() - Constructor for class uk.ac.ic.doc.automed.tml.PathwayOptimiser
 
PathwayOptimiserTool - Class in uk.ac.ic.doc.automed.editor
A PathwayOptimiserTool instance provides a dialog box displaying the result of running pathway optimisation on the given pathway.
Pattern - Class in uk.ac.ic.doc.automed.ssd
The Pattern class represents a pattern of a semistructured datasource in regular expression.
Pattern(String, String) - Constructor for class uk.ac.ic.doc.automed.ssd.Pattern
 
Pattern(int) - Constructor for class uk.ac.ic.doc.automed.ssd.Pattern
 
PatternRule - Class in uk.ac.bbk.dcs.automed.qproc.optimise
 
PatternRule(String, String) - Constructor for class uk.ac.bbk.dcs.automed.qproc.optimise.PatternRule
 
patterns - Variable in class uk.ac.ic.doc.automed.matching.modules.bidirectionalmap.Clusterer
 
patternSize - Variable in class uk.ac.ic.doc.automed.matching.modules.bidirectionalmap.Clusterer
 
PatternWritingTool - Class in uk.ac.ic.doc.automed.editor
A PatternWritingTool provides a window in which allows the users to define a yatta schema from a flat file and provides a pattern writing facility to help user in defining regular expression to extract information.
PatternWritingTool(Schema) - Constructor for class uk.ac.ic.doc.automed.editor.PatternWritingTool
 
PatternWritingTool.DynamicTree - Class in uk.ac.ic.doc.automed.editor
 
PatternWritingTool.DynamicTree() - Constructor for class uk.ac.ic.doc.automed.editor.PatternWritingTool.DynamicTree
 
pcdata - Static variable in class uk.ac.bbk.dcs.automed.xml.XMLConstants
 
PCData - Static variable in class uk.ac.bbk.dcs.automed.xml.xmldssGraph.XMLDSSGraphText
 
peekError() - Method in class uk.ac.ic.doc.automed.xml.XMLReader
 
peekToken() - Method in class uk.ac.ic.doc.automed.xml.XMLReader
 
peer - Variable in class uk.ac.ic.doc.automed.editor.Gui
 
PEER - Static variable in class uk.ac.ic.doc.automed.p2p.MessageHandler
 
PEER - Static variable in class uk.ac.ic.doc.automed.p2p.protocol.P2PConstants
 
peer - Variable in class uk.ac.ic.doc.automed.p2p.QueryGetter
 
Peer - Class in uk.ac.ic.doc.rodex.p2p
Peer.java Represents a functional peer on the network
Peer(String, PeerStateHandler) - Constructor for class uk.ac.ic.doc.rodex.p2p.Peer
 
PEER_CFG_FILE - Static variable in class uk.ac.ic.doc.automed.p2p.protocol.P2PConstants
 
PEER_DESCRIPTION - Static variable in class uk.ac.ic.doc.automed.p2p.gui.PeerTableModel
 
PEER_HOST - Static variable in class uk.ac.ic.doc.automed.p2p.protocol.P2PConstants
Field: PEER_HOST - represents the network host name of peer
PEER_LIST - Static variable in class uk.ac.ic.doc.automed.p2p.protocol.P2PConstants
Context
PEER_LIST_SCHEMA - Static variable in class uk.ac.ic.doc.automed.p2p.protocol.P2PConstants
Context
PEER_NAME - Static variable in class uk.ac.ic.doc.automed.p2p.protocol.P2PConstants
Field: PEER_NAME - a string of peer name
PEER_REPS_CFG_FILE_PREFIX - Static variable in class uk.ac.ic.doc.automed.p2p.AppToolKit
 
PEER_STATUS_ACTIVE - Static variable in class uk.ac.ic.doc.automed.p2p.Constants
Peer active status
PEER_STATUS_FLUSH - Static variable in class uk.ac.ic.doc.automed.p2p.Constants
Peer garbage-collect status
PEER_STATUS_INACTIVE - Static variable in class uk.ac.ic.doc.automed.p2p.Constants
Peer inactive status
peerAddress - Variable in class uk.ac.ic.doc.automed.p2p.AutoMedPeer
 
peerApp - Variable in class uk.ac.ic.doc.automed.editor.Gui
 
PeerApplication - Class in uk.ac.ic.doc.automed.p2p.gui
 
PeerApplication() - Constructor for class uk.ac.ic.doc.automed.p2p.gui.PeerApplication
Equivalent to PeerApplication(null,true)
PeerApplication(Gui, boolean) - Constructor for class uk.ac.ic.doc.automed.p2p.gui.PeerApplication
Create a GUI application to access the P2P system.
PeerApplication(AutoMedPeer) - Constructor for class uk.ac.ic.doc.automed.p2p.gui.PeerApplication
Start peer app with a peer
PeerCache - Class in uk.ac.ic.doc.automed.p2p
 
PeerCache(AutoMedPeer) - Constructor for class uk.ac.ic.doc.automed.p2p.PeerCache
 
PeerDescription - Class in uk.ac.ic.doc.automed.p2p.directory
Description of a Peer on the P2P network.
PeerDescription(String, String) - Constructor for class uk.ac.ic.doc.automed.p2p.directory.PeerDescription
 
PeerDescription(String, String, String, String) - Constructor for class uk.ac.ic.doc.automed.p2p.directory.PeerDescription
 
PeerDescription(String, String, String, String, String, String, String, String, String) - Constructor for class uk.ac.ic.doc.automed.p2p.directory.PeerDescription
The full constructor
PeerEnvironment - Class in uk.ac.ic.doc.automed.p2p
PeerEnvironment.java

This class is responsible for setting up necessary environment for a peer.
PeerEnvironment(AutoMedPeer) - Constructor for class uk.ac.ic.doc.automed.p2p.PeerEnvironment
Creates a new instance of PeerEnvironment
PeerEvent - Class in uk.ac.ic.doc.automed.p2p.directory
PeerEvent.java The event object that encapsulates all peer change events occur in the directory
PeerEvent(int, PeerDescription, Object) - Constructor for class uk.ac.ic.doc.automed.p2p.directory.PeerEvent
Creates a new instance of PeerEvent
PeerEventListener - Interface in uk.ac.ic.doc.automed.p2p.directory
PeerEventListener.java An interface for peer registration/update events
peerImplementsSchema(String, String) - Method in class uk.ac.ic.doc.automed.p2p.directory.P2PDirectory
 
peerName() - Method in class uk.ac.bbk.dcs.automed.qproc.annotate.grammars.schemes.Schemes
 
peerName() - Method in class uk.ac.bbk.dcs.automed.qproc.annotate.grammars.simpleComp.SimpleComp
 
peerName() - Method in class uk.ac.bbk.dcs.automed.qproc.annotate.grammars.simpleCompAppend.SimpleCompAppend
 
peerName() - Method in class uk.ac.bbk.dcs.automed.qproc.annotate.grammars.simpleCompAppendMonus.SimpleCompAppendMonus
 
peerName - Variable in class uk.ac.ic.doc.automed.p2p.protocol.Request.Port
 
PeerStateHandler - Class in uk.ac.ic.doc.automed.p2p.state
 
PeerStateHandler() - Constructor for class uk.ac.ic.doc.automed.p2p.state.PeerStateHandler
Creates a new instance of PeerStateHandler
PeerTable - Class in uk.ac.ic.doc.automed.p2p.gui
 
PeerTable(PeerTableModel) - Constructor for class uk.ac.ic.doc.automed.p2p.gui.PeerTable
 
PeerTableModel - Class in uk.ac.ic.doc.automed.p2p.gui
 
PeerTableModel(Collection, int) - Constructor for class uk.ac.ic.doc.automed.p2p.gui.PeerTableModel
 
perform(Cell[], Evaluator) - Method in class uk.ac.bbk.dcs.automed.qproc.functions.arithmetic.Div
 
perform(Cell[], Evaluator) - Method in class uk.ac.bbk.dcs.automed.qproc.functions.arithmetic.Divide
 
perform(Cell[], Evaluator) - Method in class uk.ac.bbk.dcs.automed.qproc.functions.arithmetic.Minus
 
perform(Cell[], Evaluator) - Method in class uk.ac.bbk.dcs.automed.qproc.functions.arithmetic.Mod
 
perform(Cell[], Evaluator) - Method in class uk.ac.bbk.dcs.automed.qproc.functions.arithmetic.Multiply
 
perform(Cell[], Evaluator) - Method in class uk.ac.bbk.dcs.automed.qproc.functions.arithmetic.Plus
 
perform(Cell[], Evaluator) - Method in class uk.ac.bbk.dcs.automed.qproc.functions.BuiltInFunction
 
perform(Cell[], Evaluator) - Method in class uk.ac.bbk.dcs.automed.qproc.functions.Choose
 
perform(Cell[], Evaluator) - Method in class uk.ac.bbk.dcs.automed.qproc.functions.collections.Append
 
perform(Cell[], Evaluator) - Method in class uk.ac.bbk.dcs.automed.qproc.functions.collections.Average
 
perform(Cell[], Evaluator) - Method in class uk.ac.bbk.dcs.automed.qproc.functions.collections.Count
 
perform(Cell[], Evaluator) - Method in class uk.ac.bbk.dcs.automed.qproc.functions.collections.Difference
 
perform(Cell[], Evaluator) - Method in class uk.ac.bbk.dcs.automed.qproc.functions.collections.Flatmap
 
perform(Cell[], Evaluator) - Method in class uk.ac.bbk.dcs.automed.qproc.functions.collections.Foldl
 
perform(Cell[], Evaluator) - Method in class uk.ac.bbk.dcs.automed.qproc.functions.collections.Foldr
 
perform(Cell[], Evaluator) - Method in class uk.ac.bbk.dcs.automed.qproc.functions.collections.Intersect
 
perform(Cell[], Evaluator) - Method in class uk.ac.bbk.dcs.automed.qproc.functions.collections.Map
 
perform(Cell[], Evaluator) - Method in class uk.ac.bbk.dcs.automed.qproc.functions.collections.Max
 
perform(Cell[], Evaluator) - Method in class uk.ac.bbk.dcs.automed.qproc.functions.collections.Member
 
perform(Cell[], Evaluator) - Method in class uk.ac.bbk.dcs.automed.qproc.functions.collections.Min
 
perform(Cell[], Evaluator) - Method in class uk.ac.bbk.dcs.automed.qproc.functions.collections.Monus
 
perform(Cell[], Evaluator) - Method in class uk.ac.bbk.dcs.automed.qproc.functions.collections.Single
 
perform(Cell[], Evaluator) - Method in class uk.ac.bbk.dcs.automed.qproc.functions.collections.SingleBag
 
perform(Cell[], Evaluator) - Method in class uk.ac.bbk.dcs.automed.qproc.functions.collections.SingleSet
 
perform(Cell[], Evaluator) - Method in class uk.ac.bbk.dcs.automed.qproc.functions.collections.Sort
 
perform(Cell[], Evaluator) - Method in class uk.ac.bbk.dcs.automed.qproc.functions.collections.SortDistinct
 
perform(Cell[], Evaluator) - Method in class uk.ac.bbk.dcs.automed.qproc.functions.collections.SubCollection
 
perform(Cell[], Evaluator) - Method in class uk.ac.bbk.dcs.automed.qproc.functions.collections.Sum
 
perform(Cell[], Evaluator) - Method in class uk.ac.bbk.dcs.automed.qproc.functions.collections.Union
 
perform(Cell[], Evaluator) - Method in class uk.ac.bbk.dcs.automed.qproc.functions.comparison.Equals
 
perform(Cell[], Evaluator) - Method in class uk.ac.bbk.dcs.automed.qproc.functions.comparison.Greater
 
perform(Cell[], Evaluator) - Method in class uk.ac.bbk.dcs.automed.qproc.functions.comparison.GreaterEqual
 
perform(Cell[], Evaluator) - Method in class uk.ac.bbk.dcs.automed.qproc.functions.comparison.Group
 
perform(Cell[], Evaluator) - Method in class uk.ac.bbk.dcs.automed.qproc.functions.comparison.GroupCompute
 
perform(Cell[], Evaluator) - Method in class uk.ac.bbk.dcs.automed.qproc.functions.comparison.Less
 
perform(Cell[], Evaluator) - Method in class uk.ac.bbk.dcs.automed.qproc.functions.comparison.LessEqual
 
perform(Cell[], Evaluator) - Method in class uk.ac.bbk.dcs.automed.qproc.functions.comparison.NotEqual
 
perform(Cell[], Evaluator) - Method in class uk.ac.bbk.dcs.automed.qproc.functions.date.GetMonth
 
perform(Cell[], Evaluator) - Method in class uk.ac.bbk.dcs.automed.qproc.functions.Id
 
perform(Cell[], Evaluator) - Method in class uk.ac.bbk.dcs.automed.qproc.functions.internal.BComprehension
 
perform(Cell[], Evaluator) - Method in class uk.ac.bbk.dcs.automed.qproc.functions.internal.CallToWrapper
 
perform(Cell[], Evaluator) - Method in class uk.ac.bbk.dcs.automed.qproc.functions.internal.Comprehension
 
perform(Cell[], Evaluator) - Method in class uk.ac.bbk.dcs.automed.qproc.functions.internal.Let
 
perform(Cell[], Evaluator) - Method in class uk.ac.bbk.dcs.automed.qproc.functions.internal.Range
 
perform(Cell[], Evaluator) - Method in class uk.ac.bbk.dcs.automed.qproc.functions.internal.SComprehension
 
perform(Cell[], Evaluator) - Method in class uk.ac.bbk.dcs.automed.qproc.functions.LoadFromFile
 
perform(Cell[], Evaluator) - Method in class uk.ac.bbk.dcs.automed.qproc.functions.logical.And
 
perform(Cell[], Evaluator) - Method in class uk.ac.bbk.dcs.automed.qproc.functions.logical.If
 
perform(Cell[], Evaluator) - Method in class uk.ac.bbk.dcs.automed.qproc.functions.logical.Not
 
perform(Cell[], Evaluator) - Method in class uk.ac.bbk.dcs.automed.qproc.functions.logical.Or
 
perform(Cell[], Evaluator) - Method in class uk.ac.bbk.dcs.automed.qproc.functions.PairFirst
 
perform(Cell[], Evaluator) - Method in class uk.ac.bbk.dcs.automed.qproc.functions.PairSecond
 
perform(Cell[], Evaluator) - Method in class uk.ac.bbk.dcs.automed.qproc.functions.string.Concat
 
perform(Cell[], Evaluator) - Method in class uk.ac.bbk.dcs.automed.qproc.functions.string.IndexOf
 
perform(Cell[], Evaluator) - Method in class uk.ac.bbk.dcs.automed.qproc.functions.string.LastIndexOf
 
perform(Cell[], Evaluator) - Method in class uk.ac.bbk.dcs.automed.qproc.functions.string.Length
 
perform(Cell[], Evaluator) - Method in class uk.ac.bbk.dcs.automed.qproc.functions.string.Like
 
perform(Cell[], Evaluator) - Method in class uk.ac.bbk.dcs.automed.qproc.functions.string.LowerCase
 
perform(Cell[], Evaluator) - Method in class uk.ac.bbk.dcs.automed.qproc.functions.string.Split
 
perform(Cell[], Evaluator) - Method in class uk.ac.bbk.dcs.automed.qproc.functions.string.Substring
 
perform(Cell[], Evaluator) - Method in class uk.ac.bbk.dcs.automed.qproc.functions.string.UpperCase
 
perform(Cell[], Evaluator) - Method in class uk.ac.bbk.dcs.automed.qproc.functions.typeConversion.Bag2List
 
perform(Cell[], Evaluator) - Method in class uk.ac.bbk.dcs.automed.qproc.functions.typeConversion.Bag2Set
 
perform(Cell[], Evaluator) - Method in class uk.ac.bbk.dcs.automed.qproc.functions.typeConversion.List2Bag
 
perform(Cell[], Evaluator) - Method in class uk.ac.bbk.dcs.automed.qproc.functions.typeConversion.List2Set
 
perform(Cell[], Evaluator) - Method in class uk.ac.bbk.dcs.automed.qproc.functions.typeConversion.Set2Bag
 
perform(Cell[], Evaluator) - Method in class uk.ac.bbk.dcs.automed.qproc.functions.typeConversion.Set2List
 
perform(Cell[], Evaluator) - Method in class uk.ac.bbk.dcs.automed.qproc.functions.typeConversion.ToDateTime
 
perform(Cell[], Evaluator) - Method in class uk.ac.bbk.dcs.automed.qproc.functions.typeConversion.ToFloat
 
perform(Cell[], Evaluator) - Method in class uk.ac.bbk.dcs.automed.qproc.functions.typeConversion.ToInteger
 
perform(Cell[], Evaluator) - Method in class uk.ac.bbk.dcs.automed.qproc.functions.typeConversion.ToString
 
perform(Cell[], Evaluator) - Method in class uk.ac.bbk.dcs.automed.xml.experiments.crime.CrimeIQLFun1
 
perform(Cell[], Evaluator) - Method in class uk.ac.bbk.dcs.automed.xml.functions.ElementsFromRDB
 
perform(Cell[], Evaluator) - Method in class uk.ac.bbk.dcs.automed.xml.functions.GenerateElemUID
 
perform(Cell[], Evaluator) - Method in class uk.ac.bbk.dcs.automed.xml.functions.GenerateElemUIDOffSet
 
perform(Cell[], Evaluator) - Method in class uk.ac.bbk.dcs.automed.xml.functions.GenerateNestLists
 
perform(Cell[], Evaluator) - Method in class uk.ac.bbk.dcs.automed.xml.functions.NestListsFromRDB
 
perform(Cell[], Evaluator) - Method in class uk.ac.bbk.dcs.automed.xml.functions.RenameUID
 
perform(Cell[], Evaluator) - Method in class uk.ac.bbk.dcs.automed.xml.functions.SkolemiseEdge
 
perform(Cell[], Evaluator) - Method in class uk.ac.ic.doc.automed.qproc.functions.internal.Call2Wrapper
 
perform(Cell[], Evaluator) - Method in class uk.ac.ic.doc.automed.wrappers.ssdfunctions.generateGID
 
perform(Cell[], Evaluator) - Method in class uk.ac.ic.doc.automed.wrappers.ssdfunctions.generateSID
 
performAction(PeerEvent) - Method in interface uk.ac.ic.doc.automed.p2p.directory.PeerEventListener
Perform peer's event
performAction(SchemaEvent) - Method in interface uk.ac.ic.doc.automed.p2p.directory.SchemaEventListener
Perform schema's event
PERFORMATIVE - Static variable in class uk.ac.ic.doc.automed.p2p.protocol.P2PConstants
 
performCalls - Variable in class uk.ac.bbk.dcs.automed.qproc.evaluate.Evaluator
 
performEnd - Variable in class uk.ac.bbk.dcs.automed.qproc.evaluate.Evaluator
 
performQuery(String) - Method in class uk.ac.bbk.dcs.automed.xml.materialisation.Materialiser
 
performQuery(String) - Method in class uk.ac.bbk.dcs.automed.xml.materialisation.XMLDSSMaterialiser
 
performQuery(QueryDescription, String) - Method in class uk.ac.ic.doc.rodex.qproc.QueryMediator
 
performQuery(QueryDescription, Schema, Schema[]) - Method in class uk.ac.ic.doc.rodex.qproc.QueryMediator
Overloading method to perform a query given only the name of the public schema
performStart - Variable in class uk.ac.bbk.dcs.automed.qproc.evaluate.Evaluator
 
performStateAction(int) - Method in class uk.ac.ic.doc.automed.p2p.AutoMedPeer
Implements interface PeerStateListener
performStateAction(int) - Method in class uk.ac.ic.doc.automed.p2p.gui.LoginFrame
Implements interface PeerStateListener
performStateAction(int) - Method in interface uk.ac.ic.doc.automed.p2p.state.StateChangedListener
This method is for listener objects to implement actions when a peer's state
has been changed.
performTimeSpent - Variable in class uk.ac.bbk.dcs.automed.qproc.evaluate.Evaluator
 
persist() - Method in class uk.ac.ic.doc.automed.p2p.directory.ModelDescription
 
persist() - Method in interface uk.ac.ic.doc.automed.p2p.directory.P2PDirectoryObject
 
persist() - Method in class uk.ac.ic.doc.automed.p2p.directory.PeerDescription
 
persist() - Method in class uk.ac.ic.doc.automed.p2p.directory.SchemaDescription
 
persist(Map) - Static method in class uk.ac.ic.doc.automed.reps.SchemaObject
 
Persistence - Interface in uk.ac.ic.doc.automed.util.persist
Persistence.java Application classes must implement this interface if they want to be persistent
PersistentDB - Class in uk.ac.ic.doc.automed.util.persist
PersistentDB.java

Provide standard method calls for maintaining the SleepCat database
PersistentDB(String, Database, EntryBinding) - Constructor for class uk.ac.ic.doc.automed.util.persist.PersistentDB
Creates a new instance of PersistentDB
PersistentDBController - Class in uk.ac.ic.doc.automed.util.persist
 
PersistentDBException - Exception in uk.ac.ic.doc.automed.util.persist
PersistentDBException.java

PersistentDBException(String, Throwable) - Constructor for exception uk.ac.ic.doc.automed.util.persist.PersistentDBException
Creates a new instance of PersistentDBException
PersistentDBException(String) - Constructor for exception uk.ac.ic.doc.automed.util.persist.PersistentDBException
 
PersistentHandler - Interface in uk.ac.ic.doc.automed.util.persist
PersistentHandler.java Used by user application code to call appropriate persistent handler object
PersistentKey - Class in uk.ac.ic.doc.automed.reps
 
PersistentKey(int, Class) - Constructor for class uk.ac.ic.doc.automed.reps.PersistentKey
 
PersistentKey(String, Class) - Constructor for class uk.ac.ic.doc.automed.reps.PersistentKey
 
PersistentKey(PersistentKey[], String, Class) - Constructor for class uk.ac.ic.doc.automed.reps.PersistentKey
 
PersistentKey - Class in uk.ac.ic.doc.automed.util.persist
PersistentKey.java

Encapsulates a key to be persisted
PersistentKey(String) - Constructor for class uk.ac.ic.doc.automed.util.persist.PersistentKey
Creates a new instance of PersistentKey
PersistentObject - Interface in uk.ac.ic.doc.automed.reps
 
PersistentValue - Class in uk.ac.ic.doc.automed.util.persist
PersistentValue.java

Encapsulates the value object to be persisted
PersistentValue(DatabaseEntry, EntryBinding) - Constructor for class uk.ac.ic.doc.automed.util.persist.PersistentValue
Creates a new instance of PersistentValue
PhysicalOptimiser - Class in uk.ac.bbk.dcs.automed.qproc.optimise
 
PhysicalOptimiser() - Constructor for class uk.ac.bbk.dcs.automed.qproc.optimise.PhysicalOptimiser
 
PI - Static variable in class uk.ac.ic.doc.automed.wrappers.XMLSchemaWrapperFactory
A feature option to model the PI in any Schema the factory generates
PinBoardLayout - Class in uk.ac.ic.doc.automed.editor
 
PinBoardLayout(Map, Map) - Constructor for class uk.ac.ic.doc.automed.editor.PinBoardLayout
 
pks - Variable in class uk.ac.ic.doc.automed.matching.SQLRelationshipExtractor
 
placeChild(TreeNode) - Method in class uk.ac.ic.doc.automed.p2p.tree.Field
 
placeChild(TreeNode) - Method in class uk.ac.ic.doc.automed.p2p.tree.MainObjectClasses
 
placeChild(TreeNode) - Method in class uk.ac.ic.doc.automed.p2p.tree.TreeNode
 
placeChild(TreeNode) - Method in class uk.ac.ic.doc.automed.p2p.tree.ValueList
 
plantTree() - Method in class uk.ac.ic.doc.automed.editor.autolayout.AutoLayoutTreeObject
Call this function on the root node to build a tree.
Plus - Class in uk.ac.bbk.dcs.automed.qproc.functions.arithmetic
 
Plus() - Constructor for class uk.ac.bbk.dcs.automed.qproc.functions.arithmetic.Plus
 
PLUS - Static variable in interface uk.ac.bbk.dcs.automed.qproc.translators.xquery.XQuery2IQLConstants
 
poArea - Variable in class uk.ac.ic.doc.automed.editor.IQLTool
 
policyBox - Variable in class uk.ac.ic.doc.rodex.p2p.gui.QueryTool
 
pop() - Method in class uk.ac.ic.doc.automed.editor.autolayout.Queue
 
populateCompSubCompMap(Cell, Cell) - Method in class uk.ac.bbk.dcs.automed.xml.wrappers.IQL2XQuery
 
populateDatabaseId(char, int) - Method in class uk.ac.bbk.dcs.automed.hdmstore.Span
Populate the id of the span in the database
populateEdgeValue(String) - Method in class uk.ac.bbk.dcs.automed.hdmstore.Span
Populate specific values for an edge
populateNodeValue(String, String, String) - Method in class uk.ac.bbk.dcs.automed.hdmstore.Span
Populate specific values for a node
populateSchema(AutoMedWrapper) - Method in class uk.ac.bbk.dcs.automed.hdmstore.HdmWrapperFactory
 
populateSchema(AutoMedWrapper) - Method in class uk.ac.bbk.dcs.automed.wrappers.MSAccessWrapperFactory
 
populateSchema(AutoMedWrapper) - Method in class uk.ac.bbk.dcs.automed.xml.wrappers.NXDBWrapperFactory
 
populateSchema(AutoMedWrapper) - Method in class uk.ac.bbk.dcs.automed.xml.wrappers.XMLWrapperFactory
 
populateSchema(AutoMedWrapper) - Method in class uk.ac.ic.doc.automed.wrappers.AutoMedWrapperFactory
Read the metadata from the wrapper connection, and store in existing Schema within the wrapper.
populateSchema(AutoMedWrapper) - Method in class uk.ac.ic.doc.automed.wrappers.CSVWrapperFactory
Create an AutoMed schema from the CSV file
populateSchema(AutoMedWrapper) - Method in class uk.ac.ic.doc.automed.wrappers.HDMWrapperFactory
 
populateSchema(AutoMedWrapper) - Method in class uk.ac.ic.doc.automed.wrappers.P2PWrapperFactory
Edited by Duc Le on 13/11/2005 to populate objects into a Schema object
It uses SchemaGetter to do the task.
populateSchema(AutoMedWrapper) - Method in class uk.ac.ic.doc.automed.wrappers.QueryCacheWrapperFactory
Nothing done here
populateSchema(AutoMedWrapper) - Method in class uk.ac.ic.doc.automed.wrappers.SQLWrapperFactory
 
populateSchema(AutoMedWrapper) - Method in class uk.ac.ic.doc.automed.wrappers.UMLWrapperFactory
Create an AutoMed schema from the UML file
populateSchema(AutoMedWrapper) - Method in class uk.ac.ic.doc.automed.wrappers.XMLSchemaWrapperFactory
Translate the XSDOM representation of the XML Schema document into an XML Schema oriented AutoMed schema
populateSchema(AutoMedWrapper) - Method in class uk.ac.ic.doc.automed.wrappers.YattaWrapperFactory
Read the metadata from the wrapper connection, and store in the Schema and SSDFormat within the wrapper.
populateViewMap(Schema) - Method in class uk.ac.bbk.dcs.automed.qproc.reformulate.CompositeViewMap
Populates the LHS of the viewmap with schemes from source schema.
port - Variable in class uk.ac.ic.doc.automed.p2p.directory.PeerDescription
 
PORT - Static variable in class uk.ac.ic.doc.automed.p2p.protocol.P2PConstants
 
port - Variable in class uk.ac.ic.doc.automed.p2p.protocol.Request.Register
 
port - Variable in class uk.ac.ic.doc.rodex.p2p.messages.applicationlayer.HelloMsg
 
PortInUseException - Exception in uk.ac.ic.doc.automed.p2p.communication
 
PortInUseException() - Constructor for exception uk.ac.ic.doc.automed.p2p.communication.PortInUseException
 
PortInUseException(String) - Constructor for exception uk.ac.ic.doc.automed.p2p.communication.PortInUseException
 
PortInUseException(Throwable) - Constructor for exception uk.ac.ic.doc.automed.p2p.communication.PortInUseException
 
PortInUseException(String, Throwable) - Constructor for exception uk.ac.ic.doc.automed.p2p.communication.PortInUseException
 
pos - Variable in class uk.ac.ic.doc.automed.editor.autolayout.AutoLayoutPositionable
While doing algorithms iterations (method doLayout) objects position is stored in this variable and GUI isn't updated
Positionable - Interface in uk.ac.ic.doc.automed.editor
Provide an interface that the Gui and EditorPanel will use for any repository object that it is expected to render by a DrawVertex implementation.
postgres - Static variable in class uk.ac.bbk.dcs.automed.xml.relational.XMLDSSFromRDB
 
PostgresWrapper - Class in uk.ac.ic.doc.automed.wrappers
A lower level wrapper for the conforming to the AutoMed SQL high level wrapper for Postgres SQL databases.
PostgresWrapper() - Constructor for class uk.ac.ic.doc.automed.wrappers.PostgresWrapper
 
PostgresWrapper(AccessMethod, String) - Constructor for class uk.ac.ic.doc.automed.wrappers.PostgresWrapper
Generate a new wrapper instance from information held in the repository about how to access a data source.
PostgresWrapperFactory - Class in uk.ac.ic.doc.automed.wrappers
A lower level wrapper factory for Postgres SQL databases conforming to the AutoMed SQL high level wrapper factory.
PostgresWrapperFactory() - Constructor for class uk.ac.ic.doc.automed.wrappers.PostgresWrapperFactory
 
PrecisionModule - Class in uk.ac.ic.doc.automed.matching.modules.bidirectionalmap
The module that compares the schema elements by examining the precision of their instances
PrecisionModule(ArrayList, ArrayList) - Constructor for class uk.ac.ic.doc.automed.matching.modules.bidirectionalmap.PrecisionModule
Constructs a PrecisionModule to compare the specified schema elements in the input lists.
PrecisionModule(SchemaElement[], SchemaElement[]) - Constructor for class uk.ac.ic.doc.automed.matching.modules.bidirectionalmap.PrecisionModule
Constructs a PrecisionModule to compare the specified schema elements in the input arrays.
PrecisionModule(SchemaElementPair[]) - Constructor for class uk.ac.ic.doc.automed.matching.modules.bidirectionalmap.PrecisionModule
 
PrecisionModule - Class in uk.ac.ic.doc.automed.matching.modules.intervals
The module that compares the schema elements by examining the precision of their instances
PrecisionModule(SchemaElementPair[]) - Constructor for class uk.ac.ic.doc.automed.matching.modules.intervals.PrecisionModule
 
PrecisionModule - Class in uk.ac.ic.doc.automed.matching.modules.probability.binary
The module that compares the schema elements by examining the precision of their instances
PrecisionModule(SchemaElementPair[]) - Constructor for class uk.ac.ic.doc.automed.matching.modules.probability.binary.PrecisionModule
 
PrecisionModule - Class in uk.ac.ic.doc.automed.matching.modules.probability.senary
The module that compares the schema elements by examining the precision of their instances
PrecisionModule(SchemaElementPair[]) - Constructor for class uk.ac.ic.doc.automed.matching.modules.probability.senary.PrecisionModule
 
predicates - Variable in class uk.ac.bbk.dcs.automed.qproc.iql.ASGComprehension
 
PREFER_CACHE_RESULT - Static variable in interface uk.ac.ic.doc.automed.qproc.cache.CachePolicy
 
PREFER_LIVE_DATA - Static variable in interface uk.ac.ic.doc.automed.qproc.cache.CachePolicy
 
preferredLayoutSize(Container) - Method in class uk.ac.ic.doc.automed.editor.PinBoardLayout
 
prefixAllNodalNames(String) - Method in class uk.ac.ic.doc.automed.reps.Schema
Create a new Schema which contains the same set of constructs as an existing, except each has been renamed to have a common prefix if it is of Construct type Nodal.
prefixSchemaObjectName(String, SchemaObject) - Method in class uk.ac.ic.doc.automed.reps.Schema
Create a new Schema if the SchemaObject is a Nodal object, where the SchemaObject has had a prefix applied to the node name,
prepareCallbacks(RoutingService) - Method in class uk.ac.ic.doc.automed.p2p.overlay.EnhancedDHTImpl
override this method
prettyPrint(Node, String) - Static method in class uk.ac.bbk.dcs.automed.xml.utilities.PrintUtility
Outputs the subtree with root n to System.out with identation, without any respect to the file's original identation.
prettyPrint(Node) - Static method in class uk.ac.bbk.dcs.automed.xml.utilities.PrintUtility
Outputs the subtree with root n to System.out with identation, without any respect to the file's original identation
prevCharIsCR - Variable in class uk.ac.bbk.dcs.automed.qproc.annotate.grammars.schemes.SimpleCharStream
 
prevCharIsCR - Variable in class uk.ac.bbk.dcs.automed.qproc.annotate.grammars.simpleComp.SimpleCharStream
 
prevCharIsCR - Variable in class uk.ac.bbk.dcs.automed.qproc.annotate.grammars.simpleCompAppend.SimpleCharStream
 
prevCharIsCR - Variable in class uk.ac.bbk.dcs.automed.qproc.annotate.grammars.simpleCompAppendMonus.SimpleCharStream
 
prevCharIsCR - Variable in class uk.ac.bbk.dcs.automed.qproc.translators.xquery.SimpleCharStream
 
prevCharIsLF - Variable in class uk.ac.bbk.dcs.automed.qproc.annotate.grammars.schemes.SimpleCharStream
 
prevCharIsLF - Variable in class uk.ac.bbk.dcs.automed.qproc.annotate.grammars.simpleComp.SimpleCharStream
 
prevCharIsLF - Variable in class uk.ac.bbk.dcs.automed.qproc.annotate.grammars.simpleCompAppend.SimpleCharStream
 
prevCharIsLF - Variable in class uk.ac.bbk.dcs.automed.qproc.annotate.grammars.simpleCompAppendMonus.SimpleCharStream
 
prevCharIsLF - Variable in class uk.ac.bbk.dcs.automed.qproc.translators.xquery.SimpleCharStream
 
previous() - Method in class uk.ac.ic.doc.automed.wrappers.AutoMedResult
Returns true if the cursor can be moved back to a previous row
primary_key - Variable in class uk.ac.ic.doc.automed.wrappers.SQLWrapperFactory
 
PRIMARY_KEY - Static variable in class uk.ac.ic.doc.automed.wrappers.SQLWrapperFactory
A feature option to model primary keys in any Schema the factory generates
PRIMITIVE - Static variable in interface uk.ac.ic.doc.automed.xml.XMLifyConstants
 
PRIMITIVE_CHILDREN - Static variable in interface uk.ac.ic.doc.automed.xml.XMLifyConstants
 
PRIMITIVE_CHILDREN_RECURSE - Static variable in interface uk.ac.ic.doc.automed.xml.XMLifyConstants
 
PRIMITIVE_MEMBER - Static variable in interface uk.ac.ic.doc.automed.xml.XMLifyConstants
 
PRIMITIVE_MEMBER_AND_CHILDREN - Static variable in interface uk.ac.ic.doc.automed.xml.XMLifyConstants
 
PRIMITIVE_MEMBER_RECURSE - Static variable in interface uk.ac.ic.doc.automed.xml.XMLifyConstants
 
print() - Method in class uk.ac.bbk.dcs.automed.qproc.iql.ASG
Prints g in System.out
print(PrintStream) - Method in class uk.ac.bbk.dcs.automed.qproc.iql.ASG
 
print(File) - Method in class uk.ac.bbk.dcs.automed.qproc.iql.ASG
Prints g in file f - if f already exists, it is overwritten.
print(File, boolean) - Method in class uk.ac.bbk.dcs.automed.qproc.iql.ASG
Prints g in file f - if append is set to true, then printing occurs at the end of the file, otherwise file is overwritten.
print() - Method in class uk.ac.ic.doc.automed.matching.modules.bidirectionalmap.MapDisplay
 
print() - Method in class uk.ac.ic.doc.automed.tml.TempPathway
 
print() - Method in class uk.ac.ic.doc.rodex.qproc.ASGExplore
 
print(Cell) - Method in class uk.ac.ic.doc.rodex.qproc.ASGExplore
 
printConfiguration() - Method in class uk.ac.bbk.dcs.automed.qproc.QueryProcessorConfiguration
 
printDate(String) - Static method in class uk.ac.ic.doc.automed.matching.Util
 
printDocument(Document, File) - Static method in class uk.ac.bbk.dcs.automed.xml.utilities.PrintUtility
Outputs Document doc in File f exactly as it is in the DOM.
printDocument(Document) - Static method in class uk.ac.bbk.dcs.automed.xml.utilities.PrintUtility
Outputs Document doc in System.out exactly as it is in the DOM.
printDocument(Document, PrintStream) - Static method in class uk.ac.bbk.dcs.automed.xml.utilities.PrintUtility
Outputs Document doc in ps exactly as it is in the DOM.
printElements() - Static method in class uk.ac.ic.doc.automed.matching.SchemaElement
 
printForest() - Method in class uk.ac.bbk.dcs.automed.graph.Forest
 
printGraph(DirectedGraph) - Method in class uk.ac.bbk.dcs.automed.graph.DirectedGraph
 
printGraphNodes(PrintStream) - Method in class uk.ac.bbk.dcs.automed.xml.xmldssGraph.XMLDSSGraph
 
printLineageList(ArrayList) - Static method in class uk.ac.bbk.dcs.automed.dataWarehousing.dlt.Lineage
 
printList(ArrayList) - Static method in class uk.ac.bbk.dcs.automed.dataWarehousing.util.Tools4DW
 
println() - Method in class uk.ac.bbk.dcs.automed.qproc.iql.ASG
 
println(String) - Method in class uk.ac.bbk.dcs.automed.qproc.iql.ASG
 
printNetworkHelp - Static variable in class uk.ac.ic.doc.automed.editor.Editor
 
printNetworkSyntax - Static variable in class uk.ac.ic.doc.automed.editor.Editor
 
printObject(Object, OutputStream) - Static method in class uk.ac.ic.doc.automed.Util
 
printObject(Object, Writer) - Static method in class uk.ac.ic.doc.automed.Util
 
printResultSet(ResultSet) - Method in class uk.ac.ic.doc.automed.util.db.DBAccess
A generic implementation of debug-print of a result set
printResultSet(ResultSet) - Method in class uk.ac.ic.doc.automed.util.db.DBEmbedded
A test method to print in simple tabular form a result set
printResultSet(ResultSet) - Method in class uk.ac.ic.doc.automed.util.db.DBPostgres
A test method to print in simple tabular form a result set
printResultSet(ResultSet, OutputStream) - Static method in class uk.ac.ic.doc.automed.Util
 
printResultSet(ResultSet, Writer) - Static method in class uk.ac.ic.doc.automed.Util
 
printSource(String, Document, Document, Schema) - Static method in class uk.ac.bbk.dcs.automed.xml.experiments.ExperimentsUtility
 
printSource(String, Document, Document, Schema) - Static method in class uk.ac.bbk.dcs.automed.xml.utilities.PrintUtility
 
printSQLFeedback(Object, OutputStream, String) - Static method in class uk.ac.ic.doc.automed.Util
 
printSQLFeedback(Object, Writer, String) - Static method in class uk.ac.ic.doc.automed.Util
 
printStackTrace() - Method in exception uk.ac.ic.doc.automed.AutoMedException
Overrides {#link Exception.printStackTrace()} method to also print source exception details
printStackTrace() - Method in exception uk.ac.ic.doc.automed.InconsistentException
Overrides {#link Exception.printStackTrace()} method to also print source exception details
printStackTrace() - Method in exception uk.ac.ic.doc.automed.RepositoryAccessException
 
printStackTrace() - Method in exception uk.ac.ic.doc.automed.reps.AutoRepException
 
printTree(TreeNode, int) - Method in class uk.ac.bbk.dcs.automed.graph.Forest
 
printTree(PrintStream) - Method in class uk.ac.bbk.dcs.automed.xml.xmldssGraph.XMLDSSGraph
 
PrintUtility - Class in uk.ac.bbk.dcs.automed.xml.utilities
 
PrintUtility() - Constructor for class uk.ac.bbk.dcs.automed.xml.utilities.PrintUtility
 
process(Cell, Schema[]) - Method in class uk.ac.bbk.dcs.automed.qproc.annotate.FragmentProcessor
Replaces schemes with wrapper objects in the ASG with root n
process(ASG) - Method in class uk.ac.bbk.dcs.automed.qproc.annotate.FragmentProcessor
Deprecated. use FragmentProcessor.process(ASG, Schema[]) instead
process(ASG, Schema[]) - Method in class uk.ac.bbk.dcs.automed.qproc.annotate.FragmentProcessor
Replaces schemes with wrapper objects in the given ASG
process(ASG, Schema[]) - Method in interface uk.ac.bbk.dcs.automed.qproc.annotate.QueryAnnotationProvider
Annotate an IQL query based on a given configuration
process(ASG) - Method in class uk.ac.bbk.dcs.automed.qproc.annotate.StandardQueryAnnotationProvider
Deprecated. use StandardQueryAnnotationProvider.process(ASG, Schema[]) instead
process(ASG, Schema[]) - Method in class uk.ac.bbk.dcs.automed.qproc.annotate.StandardQueryAnnotationProvider
 
process(String, AutoMedWrapper, QueryProcessorConfiguration) - Method in class uk.ac.bbk.dcs.automed.qproc.OldQueryProcessor
 
process(ASG) - Method in class uk.ac.bbk.dcs.automed.qproc.OldQueryProcessor
Deprecated. use OldQueryProcessor.process(ASG, QueryProcessorConfiguration) instead
process(ASG, QueryProcessorConfiguration) - Method in class uk.ac.bbk.dcs.automed.qproc.OldQueryProcessor
Method that processes the input ASG.
process(String, AutoMedWrapper, Schema, Schema[], String, QueryProcessorConfiguration) - Method in class uk.ac.bbk.dcs.automed.qproc.QueryProcessor
If the query language is other than IQL, then use this method to process the query.
process(ASG, Schema, Schema[], String, QueryProcessorConfiguration) - Method in class uk.ac.bbk.dcs.automed.qproc.QueryProcessor
Main processing method for issuing a query.
process(String, AutoMedWrapper, Schema, Schema[], String, QueryProcessorConfiguration) - Method in class uk.ac.bbk.dcs.automed.qproc.TempQueryProcessor
If the query language is other than IQL, then use this method to process the query.
process(ASG, Schema, Schema[], String, QueryProcessorConfiguration) - Method in class uk.ac.bbk.dcs.automed.qproc.TempQueryProcessor
Main processing method for issuing a query.
processAddTransformation(Transformation) - Method in class uk.ac.bbk.dcs.automed.evolution.schemaModelEvolution.ExtensionalSchemaEvolution
 
processAddTransformation(Transformation) - Method in class uk.ac.bbk.dcs.automed.evolution.schemaModelEvolution.SMEvolution
 
processAddTransformation(Transformation) - Method in class uk.ac.bbk.dcs.automed.evolution.schemaModelEvolution.VirtualSchemaEvolution
 
processAddTransformation(Transformation) - Method in class uk.ac.bbk.dcs.automed.evolution2.schemaEvolution.ExtensionalSchemaEvolution
 
processAddTransformation(Transformation) - Method in class uk.ac.bbk.dcs.automed.evolution2.schemaEvolution.IntegratedSchemaEvolution
 
processAddTransformation(Transformation) - Method in class uk.ac.bbk.dcs.automed.evolution2.schemaEvolution.SchemaEvolution
 
processCommands() - Method in class uk.ac.ic.doc.automed.editor.CommandLineDriver
 
processCommands(Reader, Writer) - Method in class uk.ac.ic.doc.automed.editor.CommandLineDriver
 
processConfiguration(QueryProcessorConfiguration) - Method in class uk.ac.bbk.dcs.automed.qproc.evaluate.Evaluator
 
processContractTransformation(Transformation) - Method in class uk.ac.bbk.dcs.automed.evolution.schemaModelEvolution.ExtensionalSchemaEvolution
 
processContractTransformation(Transformation) - Method in class uk.ac.bbk.dcs.automed.evolution.schemaModelEvolution.SMEvolution
 
processContractTransformation(Transformation) - Method in class uk.ac.bbk.dcs.automed.evolution.schemaModelEvolution.VirtualSchemaEvolution
 
processContractTransformation(Transformation) - Method in class uk.ac.bbk.dcs.automed.evolution2.schemaEvolution.ExtensionalSchemaEvolution
The other methods does not needs to be overridden, as the default implementation is defined in SchemaEvolution class
processContractTransformation(Transformation) - Method in class uk.ac.bbk.dcs.automed.evolution2.schemaEvolution.IntegratedSchemaEvolution
 
processContractTransformation(Transformation) - Method in class uk.ac.bbk.dcs.automed.evolution2.schemaEvolution.SchemaEvolution
 
processDeleteTransformation(Transformation) - Method in class uk.ac.bbk.dcs.automed.evolution.schemaModelEvolution.ExtensionalSchemaEvolution
 
processDeleteTransformation(Transformation) - Method in class uk.ac.bbk.dcs.automed.evolution.schemaModelEvolution.SMEvolution
 
processDeleteTransformation(Transformation) - Method in class uk.ac.bbk.dcs.automed.evolution.schemaModelEvolution.VirtualSchemaEvolution
 
processDeleteTransformation(Transformation) - Method in class uk.ac.bbk.dcs.automed.evolution2.schemaEvolution.ExtensionalSchemaEvolution
 
processDeleteTransformation(Transformation) - Method in class uk.ac.bbk.dcs.automed.evolution2.schemaEvolution.IntegratedSchemaEvolution
 
processDeleteTransformation(Transformation) - Method in class uk.ac.bbk.dcs.automed.evolution2.schemaEvolution.SchemaEvolution
 
processedArea - Variable in class uk.ac.ic.doc.automed.editor.IQLTool
 
processEvolution() - Method in class uk.ac.bbk.dcs.automed.evolution.dataEvolution.DataEvolution
 
processEvolution() - Method in interface uk.ac.bbk.dcs.automed.evolution.Evolution
 
processEvolution() - Method in class uk.ac.bbk.dcs.automed.evolution.schemaModelEvolution.SMEvolution
 
processEvolution(Transformation[]) - Method in class uk.ac.bbk.dcs.automed.evolution.schemaModelEvolution.SMEvolution
 
processEvolution(Object) - Method in interface uk.ac.bbk.dcs.automed.evolution2.Evolution
Fasade method to transparently do Evolution work
processEvolution(Object) - Method in class uk.ac.bbk.dcs.automed.evolution2.modelEvolution.ModelEvolution
Fasade method to transparently do Evolution work
processEvolution(Object) - Method in class uk.ac.bbk.dcs.automed.evolution2.schemaEvolution.ExtensionalSchemaEvolution
 
processEvolution(Object) - Method in class uk.ac.bbk.dcs.automed.evolution2.schemaEvolution.IntegratedSchemaEvolution
This is the Overridend method of super class.
processEvolution(Pathway) - Method in class uk.ac.bbk.dcs.automed.evolution2.schemaEvolution.IntegratedSchemaEvolution
 
processEvolution(Object) - Method in class uk.ac.bbk.dcs.automed.evolution2.schemaEvolution.SchemaEvolution
Fasade method to transparently do Evolution work
processExtendTransformation(Transformation) - Method in class uk.ac.bbk.dcs.automed.evolution.schemaModelEvolution.ExtensionalSchemaEvolution
 
processExtendTransformation(Transformation) - Method in class uk.ac.bbk.dcs.automed.evolution.schemaModelEvolution.SMEvolution
 
processExtendTransformation(Transformation) - Method in class uk.ac.bbk.dcs.automed.evolution.schemaModelEvolution.VirtualSchemaEvolution
 
processExtendTransformation(Transformation) - Method in class uk.ac.bbk.dcs.automed.evolution2.schemaEvolution.ExtensionalSchemaEvolution
 
processExtendTransformation(Transformation) - Method in class uk.ac.bbk.dcs.automed.evolution2.schemaEvolution.IntegratedSchemaEvolution
 
processExtendTransformation(Transformation) - Method in class uk.ac.bbk.dcs.automed.evolution2.schemaEvolution.SchemaEvolution
 
processFlatmapRange(Cell) - Static method in class uk.ac.bbk.dcs.automed.qproc.iql.IQLUtility
Performs in a top-down manner the following simplification:
PROCESSING_INSTRUCTION - Static variable in interface uk.ac.ic.doc.automed.xml.XMLifyConstants
 
processingInstruction(String, String) - Method in class uk.ac.ic.doc.automed.xml.XMLReader
 
ProcessLinkNode(SchemaObject, int) - Method in class uk.ac.ic.doc.automed.editor.layout.RootLayout
 
ProcessNode(SchemaObject) - Method in class uk.ac.ic.doc.automed.editor.layout.RootLayout
 
processRangeArgs(Cell) - Static method in class uk.ac.bbk.dcs.automed.qproc.iql.IQLUtility
 
processRangeInGen(Cell) - Static method in class uk.ac.bbk.dcs.automed.qproc.iql.IQLUtility
Performs in a top-down manner the following simplification:
processRangeRange(Cell) - Static method in class uk.ac.bbk.dcs.automed.qproc.iql.IQLUtility
Performs in a bottom-up manner the following simplifications:
processRenameTransformation(Transformation) - Method in class uk.ac.bbk.dcs.automed.evolution.schemaModelEvolution.ExtensionalSchemaEvolution
 
processRenameTransformation(Transformation) - Method in class uk.ac.bbk.dcs.automed.evolution.schemaModelEvolution.SMEvolution
 
processRenameTransformation(Transformation) - Method in class uk.ac.bbk.dcs.automed.evolution.schemaModelEvolution.VirtualSchemaEvolution
This is the Overridend method of super class.
processRenameTransformation(Transformation) - Method in class uk.ac.bbk.dcs.automed.evolution2.schemaEvolution.ExtensionalSchemaEvolution
 
processRenameTransformation(Transformation) - Method in class uk.ac.bbk.dcs.automed.evolution2.schemaEvolution.IntegratedSchemaEvolution
 
processRenameTransformation(Transformation) - Method in class uk.ac.bbk.dcs.automed.evolution2.schemaEvolution.SchemaEvolution
 
processTransformation(Transformation) - Method in class uk.ac.bbk.dcs.automed.evolution.schemaModelEvolution.SMEvolution
Process A Passed Transformation
processTransformation(Transformation) - Method in class uk.ac.bbk.dcs.automed.evolution2.schemaEvolution.IntegratedSchemaEvolution
Process A Passed Transformation
processTransformation(Schema, Schema) - Method in class uk.ac.bbk.dcs.automed.qproc.reformulate.AtomicViewMap
 
produceIQLResult(List) - Method in class uk.ac.ic.doc.rodex.qproc.QueryRewriteProcessor
Once rewriting is performed, produce the IQL results
production_table() - Method in class uk.ac.bbk.dcs.automed.qproc.iql.EnvParser
Access to production table.
production_table() - Method in class uk.ac.bbk.dcs.automed.qproc.iql.QParser
Access to production table.
PROP_AUTO_COMMIT - Static variable in class uk.ac.ic.doc.automed.util.db.Constants
property auto_commit
PROP_WRITE_DELAY - Static variable in class uk.ac.ic.doc.automed.util.db.Constants
property write_delay (for HSQLDB)
Property - Static variable in class uk.ac.bbk.dcs.automed.rdfs.RDFSConstants
 
PROPERTY_AUTOMED_SCHEMA - Static variable in class uk.ac.ic.doc.automed.reps.AccessMethod
Name to give to a AccessMethod property to hold the name of an AutoMed oriented schema that was produced from the schema associated with this AccessMethod.
PROPERTY_CREATE_TIME - Static variable in class uk.ac.ic.doc.automed.reps.AccessMethod
Name to give to a AccessMethod property for the time in milliseconds since 1 Jan 1970 that the datasource schema was created in the AutoMed repository.
PROPERTY_IQL_FUNCTION - Static variable in class uk.ac.ic.doc.automed.reps.Transformation
Name of property used to label IDENT transformations with the IQL function that is used to merge values from either side of the IDENT (i.e.
PROPERTY_IQL_FUNCTION_DEFAULT_VALUE - Static variable in class uk.ac.ic.doc.automed.reps.Transformation
Default value for Transformation.PROPERTY_IQL_FUNCTION
props - Variable in class uk.ac.ic.doc.automed.util.db.DBAccess
 
PROT_TCP - Static variable in class uk.ac.ic.doc.automed.p2p.Constants
Protocol: TCP
PROT_UDP - Static variable in class uk.ac.ic.doc.automed.p2p.Constants
Protocol: UDP
PROT_UDP_MULTICAST - Static variable in class uk.ac.ic.doc.automed.p2p.Constants
Protocol: UDP Multicast
protect() - Method in class uk.ac.ic.doc.automed.editor.Gui
Change the protection status of GUI tool bar menus after changes have occurred that alter this protection status.
protectAttributeValue(String) - Static method in class uk.ac.ic.doc.automed.xml.XMLSyntax
Escapes the characters in value that would otherwise be interpreted as markup meta characters when value is used as an attribute value.
protectCharData(String) - Static method in class uk.ac.ic.doc.automed.xml.XMLSyntax
Escapes the characters in value that would otherwise be interpreted as markup meta characters when value is used as normal character data content ("]]>" is escaped to "]]>").
protectIdentifier(String) - Static method in class uk.ac.ic.doc.automed.reps.Syntax
 
protectString(String) - Static method in class uk.ac.ic.doc.automed.reps.Syntax
 
Protocol - Class in uk.ac.ic.doc.automed.reps
The Protocol class describes a generic method of accessing data sources, such as JDBC or ODBC.
protocol - Variable in class uk.ac.ic.doc.automed.wrappers.AutoMedWrapper
 
protocolDOM - Static variable in class uk.ac.bbk.dcs.automed.rdfs.RDFSConstants
 
protocolDOM - Static variable in class uk.ac.bbk.dcs.automed.xml.XMLConstants
 
protocolNXDB - Static variable in class uk.ac.bbk.dcs.automed.xml.XMLConstants
 
protocolSAX - Static variable in class uk.ac.bbk.dcs.automed.xml.XMLConstants
 
ProviderInitialisationException - Exception in uk.ac.bbk.dcs.automed.qproc
ProviderNotFoundException.java
ProviderInitialisationException(String) - Constructor for exception uk.ac.bbk.dcs.automed.qproc.ProviderInitialisationException
Creates an NotFoundException when there has been no Exception that caused the error to discovered.
ProviderInitialisationException(String, Exception) - Constructor for exception uk.ac.bbk.dcs.automed.qproc.ProviderInitialisationException
Creates an NotFoundException when it is acting as a wrapper for other Exceptions.
ProviderNotFoundException - Exception in uk.ac.ic.doc.automed.qproc
ProviderNotFoundException.java
ProviderNotFoundException(String) - Constructor for exception uk.ac.ic.doc.automed.qproc.ProviderNotFoundException
Creates an NotFoundException when there has been no Exception that caused the error to discovered.
ProviderNotFoundException(String, Exception) - Constructor for exception uk.ac.ic.doc.automed.qproc.ProviderNotFoundException
Creates an NotFoundException when it is acting as a wrapper for other Exceptions.
PUBLIC_SCHEMA - Static variable in class uk.ac.ic.doc.automed.p2p.gui.PeerTableModel
 
PUBLIC_SCHEMA_DIRECTORY_CFG - Static variable in class uk.ac.ic.doc.automed.p2p.protocol.P2PConstants
Deprecated. use P2PConstants.DIRECTORY_SERVER_CFG_FILE instead
PUBLIC_SCHEMA_DIRECTORY_SERVER_CFG - Static variable in class uk.ac.ic.doc.automed.p2p.directory.P2PDirectoryRepository
Name given to the public schema directory server configuration file
publicSchemas - Variable in class uk.ac.ic.doc.automed.p2p.PeerCache
 
publishModel(String, String, String) - Method in class uk.ac.ic.doc.automed.p2p.directory.P2PDirectory
Store a received model to the directory's repository
publishModel(String, String, String, String[]) - Method in class uk.ac.ic.doc.automed.p2p.directory.P2PDirectory
An overloading method of {@link #publishModel(name, description, structure) above.
publishModels(Schema, String[]) - Method in class uk.ac.ic.doc.automed.p2p.MessageHandler
To transfer all models associated to a schema to P2P directory.
publishSchema(String, String, String) - Method in class uk.ac.ic.doc.automed.p2p.directory.P2PDirectory
Save schema to directory service's registry
publishSchema() - Method in class uk.ac.ic.doc.automed.p2p.gui.PeerApplication
 
publishSchema(String, Schema, String) - Method in class uk.ac.ic.doc.automed.p2p.MessageHandler
Edited by MDLE on 17,21/10/2005 to:
(1) include a string of models to send to P2PDirectory for checking
(2) check reply from P2PDirectory if there are any models that need to be transmitted
(3) also sends peer's name to directory to remember the peer-schema association
publishSchema(String, String) - Method in class uk.ac.ic.doc.automed.p2p.SchemaPublisher
Edited by mdle on 21/10/2005 to also publish schema pathway to directory
pureScheme() - Method in class uk.ac.bbk.dcs.automed.qproc.annotate.grammars.schemes.Schemes
 
pureScheme() - Method in class uk.ac.bbk.dcs.automed.qproc.annotate.grammars.simpleComp.SimpleComp
 
pureScheme() - Method in class uk.ac.bbk.dcs.automed.qproc.annotate.grammars.simpleCompAppend.SimpleCompAppend
 
pureScheme() - Method in class uk.ac.bbk.dcs.automed.qproc.annotate.grammars.simpleCompAppendMonus.SimpleCompAppendMonus
 
push(int) - Method in class uk.ac.ic.doc.automed.editor.autolayout.Queue
 
put(PersistentKey, Object) - Method in class uk.ac.ic.doc.automed.util.db.QueryCacheSQLAdapter
Place a data object into db
put(PersistentKey, Object) - Method in class uk.ac.ic.doc.automed.util.persist.PersistentDB
Place a data object into db
put(PersistentKey, Object) - Method in interface uk.ac.ic.doc.automed.util.persist.PersistentHandler
Place a data object into db
put(String, String, long) - Method in class uk.ac.ic.doc.rodex.p2p.Peer
Put a (key, value) pair to the overlay
put(ID, Serializable, long) - Method in class uk.ac.ic.doc.rodex.p2p.Peer
Put a real (key, value) pair to the overlay
putLinkNodalObjects(int) - Method in class uk.ac.ic.doc.automed.editor.autolayout.AutoLayoutERObject
 
pwQuality - Variable in class uk.ac.ic.doc.rodex.p2p.gui.QueryTool
 

Q

QEP - Class in uk.ac.ic.doc.rodex.p2p.protocol
 
QNAME - Static variable in interface uk.ac.bbk.dcs.automed.qproc.translators.xquery.XQuery2IQLConstants
 
QParser - Class in uk.ac.bbk.dcs.automed.qproc.iql
CUP v0.10j generated parser.
QParser() - Constructor for class uk.ac.bbk.dcs.automed.qproc.iql.QParser
Default constructor.
QParser(Scanner) - Constructor for class uk.ac.bbk.dcs.automed.qproc.iql.QParser
Constructor which sets the default scanner.
qpc - Variable in class uk.ac.bbk.dcs.automed.qproc.OldQueryProcessor
 
QProcException - Exception in uk.ac.bbk.dcs.automed.qproc
An exception relating to the QProc package.
QProcException(String) - Constructor for exception uk.ac.bbk.dcs.automed.qproc.QProcException
 
QProcException(String, Exception) - Constructor for exception uk.ac.bbk.dcs.automed.qproc.QProcException
Creates a QProcException when it is acting as a wrapper for other Exceptions.
QProcException(String, Error) - Constructor for exception uk.ac.bbk.dcs.automed.qproc.QProcException
 
QProcLogger - Class in uk.ac.bbk.dcs.automed.qproc
 
QProcLogger() - Constructor for class uk.ac.bbk.dcs.automed.qproc.QProcLogger
 
qrSchemas - Variable in class uk.ac.ic.doc.automed.editor.IQLTool
 
QSym - Class in uk.ac.bbk.dcs.automed.qproc.iql
CUP generated class containing symbol constants.
QSym() - Constructor for class uk.ac.bbk.dcs.automed.qproc.iql.QSym
 
qualifiers - Variable in class uk.ac.bbk.dcs.automed.qproc.iql.ASGComprehension
 
QUALITY - Static variable in class uk.ac.ic.doc.automed.p2p.protocol.P2PConstants
 
QualityIndicator - Class in uk.ac.ic.doc.rodex.qproc
 
QualityIndicator() - Constructor for class uk.ac.ic.doc.rodex.qproc.QualityIndicator
 
QualityIndicator(boolean) - Constructor for class uk.ac.ic.doc.rodex.qproc.QualityIndicator
 
QualityIndicator(boolean, float, float, float) - Constructor for class uk.ac.ic.doc.rodex.qproc.QualityIndicator
 
QualityIndicator(float, float, float, float, int, int, float, boolean, boolean) - Constructor for class uk.ac.ic.doc.rodex.qproc.QualityIndicator
Creates a new instance of QualityIndicator
query(String, String) - Method in class uk.ac.bbk.dcs.automed.hdmstore.LowLevelWrapperHdm
The query is given in the form of an string and returned as a Linked List of EdgeElement's
query() - Method in class uk.ac.bbk.dcs.automed.qproc.translators.xquery.XQuery2IQL
 
query(PeerDescription) - Method in class uk.ac.ic.doc.automed.p2p.gui.PeerApplication
Run a query on a peer.
query() - Method in class uk.ac.ic.doc.automed.p2p.gui.SchemaInfoFrame
 
QUERY - Static variable in class uk.ac.ic.doc.automed.p2p.protocol.P2PConstants
Context
query - Variable in class uk.ac.ic.doc.automed.p2p.protocol.Request.Query
 
query - Variable in class uk.ac.ic.doc.rodex.qproc.QueryRewriter
 
QUERY_LANGUAGE_IQL - Static variable in class uk.ac.bbk.dcs.automed.qproc.QueryProcessorConfiguration
 
QUERY_LANGUAGE_XQUERY - Static variable in class uk.ac.bbk.dcs.automed.qproc.QueryProcessorConfiguration
 
queryAnalyser - Variable in class uk.ac.ic.doc.rodex.qproc.MiniConQueryRewriter
 
QueryAnalyser - Class in uk.ac.ic.doc.rodex.qproc
 
QueryAnalyser(ASG) - Constructor for class uk.ac.ic.doc.rodex.qproc.QueryAnalyser
Creates a new instance of QueryAnalyser
QueryAnnotationConfiguration - Class in uk.ac.bbk.dcs.automed.qproc.annotate
QueryAnnotationConfiguration Define configuration settings for query annotation
QueryAnnotationConfiguration() - Constructor for class uk.ac.bbk.dcs.automed.qproc.annotate.QueryAnnotationConfiguration
Creates a new instance of QueryAnnotationConfiguration
QueryAnnotationException - Exception in uk.ac.bbk.dcs.automed.qproc.annotate
QueryAnnotationException.java
QueryAnnotationException(String) - Constructor for exception uk.ac.bbk.dcs.automed.qproc.annotate.QueryAnnotationException
Creates an QueryAnnotationException when there has been no Exception that caused the error to discovered.
QueryAnnotationException(String, Exception) - Constructor for exception uk.ac.bbk.dcs.automed.qproc.annotate.QueryAnnotationException
Creates an QueryAnnotationException when it is acting as a wrapper for other Exceptions.
QueryAnnotationFactory - Class in uk.ac.bbk.dcs.automed.qproc.annotate
Responsible for instantiating appropriate QueryAnnotationProvider classes.
QueryAnnotationFactory() - Constructor for class uk.ac.bbk.dcs.automed.qproc.annotate.QueryAnnotationFactory
 
QueryAnnotationProvider - Interface in uk.ac.bbk.dcs.automed.qproc.annotate
Defines a set of mandatory behaviours of a query annotator
Query annotator classes must implement this interface.
queryBuffer - Variable in class uk.ac.ic.doc.automed.editor.IQLTool
 
QueryCache - Class in uk.ac.ic.doc.rodex.qproc
 
QueryCacheSQLAdapter - Class in uk.ac.ic.doc.automed.util.db
QueryCacheSQLAdapter.java Bridges between PersistentHandler and DBEmbedded
QueryCacheSQLAdapter(String, String, String, Properties) - Constructor for class uk.ac.ic.doc.automed.util.db.QueryCacheSQLAdapter
Creates a new instance of DBAccessAdapter
QueryCacheWrapper - Class in uk.ac.ic.doc.automed.wrappers
A high-level, object-type wrapper for a DefaultQueryCache.
QueryCacheWrapper() - Constructor for class uk.ac.ic.doc.automed.wrappers.QueryCacheWrapper
 
QueryCacheWrapper(AccessMethod, String) - Constructor for class uk.ac.ic.doc.automed.wrappers.QueryCacheWrapper
This method only exists to conform with the AutoMedWrapper
QueryCacheWrapperFactory - Class in uk.ac.ic.doc.automed.wrappers
A high-level wrapper factory for creating QueryCacheWrapper instances.
QueryCacheWrapperFactory() - Constructor for class uk.ac.ic.doc.automed.wrappers.QueryCacheWrapperFactory
 
QueryDecomposer - Class in uk.ac.bbk.dcs.automed.dataWarehousing.util
 
QueryDecomposer() - Constructor for class uk.ac.bbk.dcs.automed.dataWarehousing.util.QueryDecomposer
 
queryDecomposer(String, int) - Method in class uk.ac.bbk.dcs.automed.dataWarehousing.util.QueryDecomposer
 
queryDecomposer(Cell, int) - Method in class uk.ac.bbk.dcs.automed.dataWarehousing.util.QueryDecomposer
 
queryDecomposer(String) - Method in class uk.ac.bbk.dcs.automed.dataWarehousing.util.QueryDecomposer
 
queryDecomposer(Cell) - Method in class uk.ac.bbk.dcs.automed.dataWarehousing.util.QueryDecomposer
 
QueryDescription - Class in uk.ac.ic.doc.rodex.qproc
 
QueryDescription(String, String, QualityIndicator) - Constructor for class uk.ac.ic.doc.rodex.qproc.QueryDescription
Creates a new instance of QueryDescription
QueryDescription(String, String) - Constructor for class uk.ac.ic.doc.rodex.qproc.QueryDescription
Use this constructor when no quality indicators are used
QueryDescription(String, ASG, QualityIndicator) - Constructor for class uk.ac.ic.doc.rodex.qproc.QueryDescription
 
QueryEvaluationConfiguration - Class in uk.ac.ic.doc.automed.qproc.eval
QueryEvaluationConfiguration.java Define configuration settings for query evaluation
QueryEvaluationConfiguration() - Constructor for class uk.ac.ic.doc.automed.qproc.eval.QueryEvaluationConfiguration
Creates a new instance of QueryEvaluationConfiguration
QueryEvaluationConfiguration(QualityIndicator) - Constructor for class uk.ac.ic.doc.automed.qproc.eval.QueryEvaluationConfiguration
 
QueryEvaluationException - Exception in uk.ac.ic.doc.automed.qproc.eval
QueryEvaluationException.java
QueryEvaluationException(String) - Constructor for exception uk.ac.ic.doc.automed.qproc.eval.QueryEvaluationException
Creates an NotFoundException when there has been no Exception that caused the error to discovered.
QueryEvaluationException(String, Exception) - Constructor for exception uk.ac.ic.doc.automed.qproc.eval.QueryEvaluationException
Creates an NotFoundException when it is acting as a wrapper for other Exceptions.
QueryEvaluationFactory - Class in uk.ac.bbk.dcs.automed.qproc.evaluate
Responsible for instantiating appropriate QueryEvaluationProvider classes.
QueryEvaluationFactory() - Constructor for class uk.ac.bbk.dcs.automed.qproc.evaluate.QueryEvaluationFactory
 
QueryEvaluationFactory - Class in uk.ac.ic.doc.automed.qproc.eval
QueryEvaluationFactory.java Responsible for loading and instantiating appropriate QueryEvaluationProvider classes.
QueryEvaluationFactory() - Constructor for class uk.ac.ic.doc.automed.qproc.eval.QueryEvaluationFactory
 
QueryEvaluationProvider - Interface in uk.ac.ic.doc.automed.qproc.eval
QueryEvaluationProvider.java Defines a set of mandatory behaviours of a query optimiser
Query optimiser (logical and physical) classes must implement this interface.
QueryFilter - Class in uk.ac.ic.doc.automed.p2p.overlay
 
QueryFilter(ASG) - Constructor for class uk.ac.ic.doc.automed.p2p.overlay.QueryFilter
Creates a new instance of QueryFilter
QueryFormatException - Exception in uk.ac.ic.doc.automed.qproc
 
QueryFormatException(String, Throwable) - Constructor for exception uk.ac.ic.doc.automed.qproc.QueryFormatException
Creates a new instance of QueryIntegrityException
QueryFormatException(String) - Constructor for exception uk.ac.ic.doc.automed.qproc.QueryFormatException
 
QueryFunction - Class in uk.ac.ic.doc.rodex.qproc
 
QueryFunction(AutoMedQueryToken, QueryVariable, AutoMedType) - Constructor for class uk.ac.ic.doc.rodex.qproc.QueryFunction
Creates a new instance of QueryFunction
Accepts an AutoMedType expression
QueryGetter - Class in uk.ac.ic.doc.automed.p2p
 
QueryGetter(AutoMedPeer) - Constructor for class uk.ac.ic.doc.automed.p2p.QueryGetter
 
QueryIntegrityException - Exception in uk.ac.ic.doc.rodex.qproc
 
QueryIntegrityException(String, Throwable) - Constructor for exception uk.ac.ic.doc.rodex.qproc.QueryIntegrityException
Creates a new instance of QueryIntegrityException
QueryIntegrityException(String) - Constructor for exception uk.ac.ic.doc.rodex.qproc.QueryIntegrityException
 
queryLanguageModeBox - Variable in class uk.ac.ic.doc.automed.editor.IQLTool
 
QueryMediator - Class in uk.ac.ic.doc.rodex.qproc
QueryMediator.java This class is the interface to the query processing and execution engine.
queryNo - Variable in class uk.ac.ic.doc.automed.editor.IQLTool
 
QueryOptimisationConfiguration - Class in uk.ac.ic.doc.automed.qproc.opti
QueryOptimisationConfiguration.java Define configuration settings for query optimisation
QueryOptimisationConfiguration() - Constructor for class uk.ac.ic.doc.automed.qproc.opti.QueryOptimisationConfiguration
Creates a new instance of QueryOptimisationConfiguration
QueryOptimisationException - Exception in uk.ac.ic.doc.automed.qproc.opti
QueryOptimisationException.java
QueryOptimisationException(String) - Constructor for exception uk.ac.ic.doc.automed.qproc.opti.QueryOptimisationException
Creates an NotFoundException when there has been no Exception that caused the error to discovered.
QueryOptimisationException(String, Exception) - Constructor for exception uk.ac.ic.doc.automed.qproc.opti.QueryOptimisationException
Creates an NotFoundException when it is acting as a wrapper for other Exceptions.
QueryOptimisationFactory - Class in uk.ac.bbk.dcs.automed.qproc.optimise
Responsible for instantiating appropriate QueryOptimisationProvider classes.
QueryOptimisationFactory() - Constructor for class uk.ac.bbk.dcs.automed.qproc.optimise.QueryOptimisationFactory
 
QueryOptimisationFactory - Class in uk.ac.ic.doc.automed.qproc.opti
QueryOptimisationFactory.java Responsible for loading and instantiating appropriate QueryOptimisationProvider classes.
QueryOptimisationFactory() - Constructor for class uk.ac.ic.doc.automed.qproc.opti.QueryOptimisationFactory
 
QueryOptimisationProvider - Interface in uk.ac.ic.doc.automed.qproc.opti
QueryOptimisationProvider.java Defines a set of mandatory behaviours of a query optimiser
Query optimiser (logical and physical) classes must implement this interface.
QueryParser - Class in uk.ac.bbk.dcs.automed.qproc.annotate.grammars
Abstracts
QueryParser() - Constructor for class uk.ac.bbk.dcs.automed.qproc.annotate.grammars.QueryParser
 
QueryProcessingException - Exception in uk.ac.ic.doc.rodex.qproc
 
QueryProcessingException(String, Throwable) - Constructor for exception uk.ac.ic.doc.rodex.qproc.QueryProcessingException
Creates a new instance of QueryIntegrityException
QueryProcessingException(String) - Constructor for exception uk.ac.ic.doc.rodex.qproc.QueryProcessingException
 
QueryProcessor - Class in uk.ac.bbk.dcs.automed.qproc
The new query processor class provides query reformulation for three techniques - GAV, LAV and BAV.
QueryProcessor() - Constructor for class uk.ac.bbk.dcs.automed.qproc.QueryProcessor
Create an instance of the Query Processor.
QueryProcessorConfiguration - Class in uk.ac.bbk.dcs.automed.qproc
QueryProcessingConfiguration.java A global configuration class that encapsulates different aspects of a query processing 'process'
Each phase in query processing can provide their own configuration class as long as it extends this class.
QueryProcessorConfiguration() - Constructor for class uk.ac.bbk.dcs.automed.qproc.QueryProcessorConfiguration
Creates a new instance of QueryProcessingConfiguration
QueryReformulationConfiguration - Class in uk.ac.ic.doc.automed.qproc.refo
QueryReformulationConfiguration.java Define configuration settings for query reformulation
QueryReformulationConfiguration() - Constructor for class uk.ac.ic.doc.automed.qproc.refo.QueryReformulationConfiguration
Creates a new instance of QueryReformulationConfiguration
QueryReformulationException - Exception in uk.ac.ic.doc.automed.qproc.refo
QueryReformulationException.java
QueryReformulationException(String) - Constructor for exception uk.ac.ic.doc.automed.qproc.refo.QueryReformulationException
Creates an NotFoundException when there has been no Exception that caused the error to discovered.
QueryReformulationException(String, Exception) - Constructor for exception uk.ac.ic.doc.automed.qproc.refo.QueryReformulationException
Creates an NotFoundException when it is acting as a wrapper for other Exceptions.
QueryReformulationFactory - Class in uk.ac.bbk.dcs.automed.qproc.reformulate
Responsible for instantiating appropriate QueryReformulationProvider classes.
QueryReformulationFactory() - Constructor for class uk.ac.bbk.dcs.automed.qproc.reformulate.QueryReformulationFactory
 
QueryReformulationProvider - Interface in uk.ac.ic.doc.automed.qproc.refo
QueryReformulationProvider.java Defines a set of mandatory behaviours of a query reformulator
Query reformulator classes must implement this interface.
QueryReformulator - Class in uk.ac.bbk.dcs.automed.qproc.reformulate
Responsible for reformulating a query along AutoMed pathways (GAV, LAV or BAV).
QueryReformulator() - Constructor for class uk.ac.bbk.dcs.automed.qproc.reformulate.QueryReformulator
Constructs an instance of this class.
QueryResultDescription - Class in uk.ac.ic.doc.automed.p2p
 
QueryResultDescription(AbstractMessage) - Constructor for class uk.ac.ic.doc.automed.p2p.QueryResultDescription
 
QueryResultException - Exception in uk.ac.ic.doc.rodex.qproc
 
QueryResultException(String, Throwable) - Constructor for exception uk.ac.ic.doc.rodex.qproc.QueryResultException
Creates a new instance of QueryRewriterException
QueryResultException(String) - Constructor for exception uk.ac.ic.doc.rodex.qproc.QueryResultException
 
QueryResultProducer - Class in uk.ac.ic.doc.rodex.qproc
 
QueryResultProducer(List) - Constructor for class uk.ac.ic.doc.rodex.qproc.QueryResultProducer
Creates a new instance of QueryResultProducer
QueryRewritable - Interface in uk.ac.ic.doc.rodex.qproc
QueryRewritable.java To be implemented by query caches that want to use QueryRewrite service (e.g.
QueryRewriteProcessor - Class in uk.ac.ic.doc.rodex.qproc
 
QueryRewriteProcessor(Schema, ASG, int) - Constructor for class uk.ac.ic.doc.rodex.qproc.QueryRewriteProcessor
 
QueryRewriteProcessor(Schema, QueryAnalyser, int) - Constructor for class uk.ac.ic.doc.rodex.qproc.QueryRewriteProcessor
 
QueryRewriter - Class in uk.ac.ic.doc.rodex.qproc
 
QueryRewriter() - Constructor for class uk.ac.ic.doc.rodex.qproc.QueryRewriter
Creates a new instance of QueryRewriter
QueryRewriterException - Exception in uk.ac.ic.doc.rodex.qproc
 
QueryRewriterException(String, Throwable) - Constructor for exception uk.ac.ic.doc.rodex.qproc.QueryRewriterException
Creates a new instance of QueryRewriterException
QueryRewriterException(String) - Constructor for exception uk.ac.ic.doc.rodex.qproc.QueryRewriterException
 
QueryRewriterResult - Class in uk.ac.ic.doc.rodex.qproc
 
QueryRewriterResult() - Constructor for class uk.ac.ic.doc.rodex.qproc.QueryRewriterResult
Creates a new instance of QueryRewriterResult
querySchema - Variable in class uk.ac.ic.doc.automed.editor.IQLTool
 
QuerySubGoal - Class in uk.ac.ic.doc.rodex.qproc
 
QuerySubGoal(String[]) - Constructor for class uk.ac.ic.doc.rodex.qproc.QuerySubGoal
Creates a new instance of QuerySubGoal
QuerySubGoal(String) - Constructor for class uk.ac.ic.doc.rodex.qproc.QuerySubGoal
Create a new sub goal from a scheme definition, e.g.
QuerySubGoal(String, String) - Constructor for class uk.ac.ic.doc.rodex.qproc.QuerySubGoal
Create a new sub goal from a schema name and a short scheme definition, e.g.
QuerySubGoal(String, String[]) - Constructor for class uk.ac.ic.doc.rodex.qproc.QuerySubGoal
Create a new sub goal from a schema name and scheme elements
QueryTool - Class in uk.ac.ic.doc.rodex.p2p.gui
QueryTool.java A GUI tool to demonstrate the new query execution
QueryTool(Schema) - Constructor for class uk.ac.ic.doc.rodex.p2p.gui.QueryTool
Creates a new instance of QueryTool
QueryVariable - Class in uk.ac.ic.doc.rodex.qproc
 
QueryVariable(String) - Constructor for class uk.ac.ic.doc.rodex.qproc.QueryVariable
Creates a new instance of QueryVariable
Queue - Class in uk.ac.ic.doc.automed.editor.autolayout
Class to implement a simple queue of integers.
Queue() - Constructor for class uk.ac.ic.doc.automed.editor.autolayout.Queue
 
Queue - Class in uk.ac.ic.doc.automed.util.queue
 
Queue() - Constructor for class uk.ac.ic.doc.automed.util.queue.Queue
Creates a new instance of Queue
QueueException - Exception in uk.ac.ic.doc.automed.util.queue
 
QueueException() - Constructor for exception uk.ac.ic.doc.automed.util.queue.QueueException
Creates a new instance of QueueException
QueueException(String, Throwable) - Constructor for exception uk.ac.ic.doc.automed.util.queue.QueueException
 
QueueWorker - Class in uk.ac.ic.doc.automed.util.queue
 
QueueWorker(Queue, JobHandler) - Constructor for class uk.ac.ic.doc.automed.util.queue.QueueWorker
Creates a new instance of QueueWorker
quitHelp - Static variable in class uk.ac.ic.doc.automed.editor.CommandLineDriver
 
quitSyntax - Static variable in class uk.ac.ic.doc.automed.editor.CommandLineDriver
 

R

r() - Method in class uk.ac.bbk.dcs.automed.qproc.iql.Cell
Returns a reference to the right child of the Cell
random(int) - Static method in class uk.ac.ic.doc.automed.matching.Util
 
Range - Class in uk.ac.bbk.dcs.automed.qproc.functions.internal
 
Range() - Constructor for class uk.ac.bbk.dcs.automed.qproc.functions.internal.Range
 
Range - Class in uk.ac.ic.doc.automed.matching
 
Range(Comparable, Comparable) - Constructor for class uk.ac.ic.doc.automed.matching.Range
 
RANGE_BOTH - Static variable in class uk.ac.bbk.dcs.automed.qproc.QueryProcessorConfiguration
 
RANGE_LOWER - Static variable in class uk.ac.bbk.dcs.automed.qproc.QueryProcessorConfiguration
 
RANGE_OBJECT_ANY - Static variable in class uk.ac.ic.doc.automed.reps.Transformation
 
RANGE_OBJECT_OBJECT - Static variable in class uk.ac.ic.doc.automed.reps.Transformation
 
RANGE_UPPER - Static variable in class uk.ac.bbk.dcs.automed.qproc.QueryProcessorConfiguration
 
RANGE_VOID_ANY - Static variable in class uk.ac.bbk.dcs.automed.evolution.schemaModelEvolution.ExtensionalSchemaEvolution
 
RANGE_VOID_ANY - Static variable in class uk.ac.ic.doc.automed.reps.Transformation
 
RANGE_VOID_OBJECT - Static variable in class uk.ac.ic.doc.automed.reps.Transformation
 
RangeBasedQueryRewriter - Class in uk.ac.ic.doc.rodex.qproc
 
RangeBasedQueryRewriter(ASG, ASG) - Constructor for class uk.ac.ic.doc.rodex.qproc.RangeBasedQueryRewriter
Creates a new instance of RangeBasedQueryRewriter given only a list of cached views
RangeBasedQueryRewriter(QueryAnalyser, ASG) - Constructor for class uk.ac.ic.doc.rodex.qproc.RangeBasedQueryRewriter
Creates a new instance of RangeBasedQueryRewriter given only a list of cached views
RangeBasedQueryRewriterResult - Class in uk.ac.ic.doc.rodex.qproc
RangeBasedQueryRewriterResult.java
RangeBasedQueryRewriterResult() - Constructor for class uk.ac.ic.doc.rodex.qproc.RangeBasedQueryRewriterResult
Creates a new instance of RangeBasedQueryRewriterResult
rangeDefs - Variable in class uk.ac.ic.doc.rodex.qproc.QueryRewriterResult
 
rangeSimplifications(ASG) - Method in class uk.ac.bbk.dcs.automed.qproc.evaluate.Evaluator
 
rangeWeights - Static variable in class uk.ac.ic.doc.automed.reps.Transformation
 
RArrow - Static variable in class uk.ac.bbk.dcs.automed.qproc.iql.QSym
 
RB - Static variable in interface uk.ac.bbk.dcs.automed.qproc.translators.xquery.XQuery2IQLConstants
 
RCB - Static variable in class uk.ac.bbk.dcs.automed.qproc.iql.QSym
 
RCV_BUFFER_SIZE - Static variable in class uk.ac.ic.doc.automed.p2p.Constants
Received buffer size used for clients
RDAB - Static variable in class uk.ac.bbk.dcs.automed.qproc.iql.FSym
 
RDAB - Static variable in class uk.ac.bbk.dcs.automed.qproc.iql.QSym
 
RDFSConstants - Class in uk.ac.bbk.dcs.automed.rdfs
 
RDFSConstants() - Constructor for class uk.ac.bbk.dcs.automed.rdfs.RDFSConstants
 
RDFSModel - Class in uk.ac.bbk.dcs.automed.rdfs
Defines the AutoMed RDFS Model
RDFSModel() - Constructor for class uk.ac.bbk.dcs.automed.rdfs.RDFSModel
Creates the RDFS Model in the AutoMed Repository (MDR).
read(InputStream) - Static method in class uk.ac.ic.doc.automed.reps.Model
 
read(InputStream, String) - Static method in class uk.ac.ic.doc.automed.reps.Model
 
read(InputStream) - Static method in class uk.ac.ic.doc.automed.reps.Schema
A variant of Schema.read(InputStream, String), where the name of the new Schema created is taken from that held in the textual description read from the InputStream.
read(InputStream, String) - Static method in class uk.ac.ic.doc.automed.reps.Schema
Read a schema description held in a textually format (possibly created by Schema.write()) into the repository.
read(InputStream) - Static method in class uk.ac.ic.doc.automed.reps.Transformation
 
readBufferSize - Variable in class uk.ac.ic.doc.automed.p2p.communication.AbstractServer
 
readBytes(InputStream, int) - Static method in class uk.ac.ic.doc.automed.p2p.communication.TCPClient
Get bytes array from a TCP input stream
readChar() - Method in class uk.ac.bbk.dcs.automed.qproc.annotate.grammars.schemes.SimpleCharStream
 
readChar() - Method in class uk.ac.bbk.dcs.automed.qproc.annotate.grammars.simpleComp.SimpleCharStream
 
readChar() - Method in class uk.ac.bbk.dcs.automed.qproc.annotate.grammars.simpleCompAppend.SimpleCharStream
 
readChar() - Method in class uk.ac.bbk.dcs.automed.qproc.annotate.grammars.simpleCompAppendMonus.SimpleCharStream
 
readChar() - Method in class uk.ac.bbk.dcs.automed.qproc.translators.xquery.SimpleCharStream
 
readConfigFile() - Static method in class uk.ac.ic.doc.automed.DSR
Reads the current configuration file.
readConfigFile(String) - Static method in class uk.ac.ic.doc.automed.DSR
Reads the directives for the data sources defined in configFile.
readFile(Object, Evaluator, ASG, Map) - Method in class uk.ac.bbk.dcs.automed.qproc.functions.internal.CallToWrapper
 
readMetaData() - Method in class uk.ac.ic.doc.automed.wrappers.YattaWrapper
 
readScheme(Schema, Construct, Syntax.Tokenizer) - Static method in class uk.ac.ic.doc.automed.reps.SchemaObject
 
readSchemeDefinition(Construct, String) - Method in class uk.ac.ic.doc.automed.reps.Schema
Take a String containing the definition of a scheme of a SchemaObject and create an Object array that would be used in creating the SchemaObject
readSchemeRef(Syntax.Tokenizer) - Static method in class uk.ac.ic.doc.automed.reps.SchemaObject
 
readSchemeTokens(Syntax.Tokenizer) - Static method in class uk.ac.ic.doc.automed.reps.SchemaObject
 
realWHNFCalls - Variable in class uk.ac.bbk.dcs.automed.qproc.evaluate.Evaluator
 
realWrapperCalls - Static variable in class uk.ac.bbk.dcs.automed.qproc.functions.internal.CallToWrapper
 
receiveDatagram(DatagramSocket) - Static method in class uk.ac.ic.doc.automed.p2p.communication.UDPClient
Receive response packets in a separate thread
RECEIVER - Static variable in class uk.ac.ic.doc.automed.p2p.protocol.P2PConstants
 
RECOMMEND_ALL - Static variable in class uk.ac.ic.doc.automed.p2p.protocol.P2PConstants
performative
RECOMMEND_ONE - Static variable in class uk.ac.ic.doc.automed.p2p.protocol.P2PConstants
performative
recoverTracingData(Lineage, ASG) - Static method in class uk.ac.bbk.dcs.automed.dataWarehousing.util.Tools4DW
 
RECURSE - Static variable in interface uk.ac.ic.doc.automed.xml.XMLifyConstants
 
reduce_table() - Method in class uk.ac.bbk.dcs.automed.qproc.iql.EnvParser
Access to reduce_goto table.
reduce_table() - Method in class uk.ac.bbk.dcs.automed.qproc.iql.QParser
Access to reduce_goto table.
REF - Static variable in class uk.ac.ic.doc.automed.p2p.tree.TreeNode
 
Reference - Class in uk.ac.ic.doc.automed.p2p.tree
 
Reference(PersistentKey, boolean) - Constructor for class uk.ac.ic.doc.automed.p2p.tree.Reference
 
Reference(PersistentObject, boolean) - Constructor for class uk.ac.ic.doc.automed.p2p.tree.Reference
 
REFERENCE - Static variable in interface uk.ac.ic.doc.automed.xml.XMLifyConstants
 
REFERENCE_CHILDREN - Static variable in interface uk.ac.ic.doc.automed.xml.XMLifyConstants
 
REFERENCE_CHILDREN_RECURSE - Static variable in interface uk.ac.ic.doc.automed.xml.XMLifyConstants
 
REFERENCE_MEMBER - Static variable in interface uk.ac.ic.doc.automed.xml.XMLifyConstants
 
REFERENCE_MEMBER_AND_CHILDREN - Static variable in interface uk.ac.ic.doc.automed.xml.XMLifyConstants
 
REFERENCE_MEMBER_RECURSE - Static variable in interface uk.ac.ic.doc.automed.xml.XMLifyConstants
 
refineConjunctiveQueries(List, QueryRewriterResult) - Method in class uk.ac.ic.doc.rodex.qproc.MiniConQueryRewriter
Refine the conjunctive queries by, for example, removing duplicate views or
sub-goals.
reflectCommandMethods() - Method in class uk.ac.ic.doc.automed.editor.CommandLineDriver
 
reformulate(ASG, QueryProcessorConfiguration) - Method in class uk.ac.bbk.dcs.automed.qproc.reformulate.GAVQueryReformulationProvider
Reformulates the query represented by the ASG g according to the view defintions it has stored.
reformulate(ASG, Schema, Schema[], String, QueryProcessorConfiguration) - Method in class uk.ac.bbk.dcs.automed.qproc.reformulate.QueryReformulator
 
reformulate(ASG, Schema, Schema[], String, QueryProcessorConfiguration) - Method in interface uk.ac.ic.doc.automed.qproc.refo.QueryReformulationProvider
Reformulate an IQL query based on a given configuration
reformulatedArea - Variable in class uk.ac.ic.doc.automed.editor.IQLTool
 
REFORMULATION_BAV - Static variable in class uk.ac.bbk.dcs.automed.qproc.QueryProcessorConfiguration
 
REFORMULATION_GAV - Static variable in class uk.ac.bbk.dcs.automed.qproc.QueryProcessorConfiguration
 
REFORMULATION_LAV_INV_RULES - Static variable in class uk.ac.bbk.dcs.automed.qproc.QueryProcessorConfiguration
 
ReformulationUtility - Class in uk.ac.bbk.dcs.automed.qproc.reformulate
 
ReformulationUtility() - Constructor for class uk.ac.bbk.dcs.automed.qproc.reformulate.ReformulationUtility
 
refresh() - Method in class uk.ac.ic.doc.automed.editor.EditorPanel
Redraw the contents of this editor panel after some change to the AutoMed repository objects it displays.
refresh() - Method in class uk.ac.ic.doc.automed.editor.Gui
Refresh the contents of all GUI windows.
refresh() - Method in class uk.ac.ic.doc.automed.p2p.gui.MainFrame
 
refresh(Collection) - Method in class uk.ac.ic.doc.automed.p2p.gui.PeerTable
 
refresh(Collection) - Method in class uk.ac.ic.doc.automed.p2p.gui.PeerTableModel
 
refresh() - Method in class uk.ac.ic.doc.automed.qproc.cache.DefaultQueryCache
refresh cache
refresh() - Method in interface uk.ac.ic.doc.automed.util.cache.Cacheable
Refresh cache content
refreshFor(MainFrame) - Method in class uk.ac.ic.doc.automed.p2p.gui.PeerApplication
 
refreshMySchemas() - Method in class uk.ac.ic.doc.automed.p2p.PeerCache
 
refreshPeersOf(SchemaDescription) - Method in class uk.ac.ic.doc.automed.p2p.PeerCache
 
refreshPublicSchemas() - Method in class uk.ac.ic.doc.automed.p2p.PeerCache
 
REFUSE - Static variable in class uk.ac.ic.doc.automed.p2p.protocol.P2PConstants
performative
register() - Method in class uk.ac.ic.doc.automed.p2p.AutoMedPeer
 
registerPeer(String, String, String, String) - Method in class uk.ac.ic.doc.automed.p2p.directory.P2PDirectory
dmle 2/11/2005: register peer status as well
registerPeer(String, String, String, String, String, String, String, String, String) - Method in class uk.ac.ic.doc.automed.p2p.directory.P2PDirectory
Register peer reachability with domain and authentication
registerPeer(String, String) - Method in class uk.ac.ic.doc.automed.p2p.MessageHandler
Register a peer after successful login dmle 2/11/2005: also update peer's status at login
registerPeer(String, String, String, String) - Method in class uk.ac.ic.doc.automed.p2p.MessageHandler
Register a peer with the server at login dmle 2/11/2005: also update peer's status at login
registerWrapper(Class, Protocol, String, String) - Static method in class uk.ac.ic.doc.automed.wrappers.AutoMedWrapper
Register an AutoMedWrapper implementation with the AutoMed system.
ReInit(Reader) - Method in class uk.ac.bbk.dcs.automed.qproc.annotate.grammars.QueryParser
 
ReInit(InputStream) - Method in class uk.ac.bbk.dcs.automed.qproc.annotate.grammars.schemes.Schemes
 
ReInit(Reader) - Method in class uk.ac.bbk.dcs.automed.qproc.annotate.grammars.schemes.Schemes
 
ReInit(SchemesTokenManager) - Method in class uk.ac.bbk.dcs.automed.qproc.annotate.grammars.schemes.Schemes
 
ReInit(SimpleCharStream) - Method in class uk.ac.bbk.dcs.automed.qproc.annotate.grammars.schemes.SchemesTokenManager
 
ReInit(SimpleCharStream, int) - Method in class uk.ac.bbk.dcs.automed.qproc.annotate.grammars.schemes.SchemesTokenManager
 
ReInit(Reader, int, int, int) - Method in class uk.ac.bbk.dcs.automed.qproc.annotate.grammars.schemes.SimpleCharStream
 
ReInit(Reader, int, int) - Method in class uk.ac.bbk.dcs.automed.qproc.annotate.grammars.schemes.SimpleCharStream
 
ReInit(Reader) - Method in class uk.ac.bbk.dcs.automed.qproc.annotate.grammars.schemes.SimpleCharStream
 
ReInit(InputStream, int, int, int) - Method in class uk.ac.bbk.dcs.automed.qproc.annotate.grammars.schemes.SimpleCharStream
 
ReInit(InputStream) - Method in class uk.ac.bbk.dcs.automed.qproc.annotate.grammars.schemes.SimpleCharStream
 
ReInit(InputStream, int, int) - Method in class uk.ac.bbk.dcs.automed.qproc.annotate.grammars.schemes.SimpleCharStream
 
ReInit(Reader, int, int, int) - Method in class uk.ac.bbk.dcs.automed.qproc.annotate.grammars.simpleComp.SimpleCharStream
 
ReInit(Reader, int, int) - Method in class uk.ac.bbk.dcs.automed.qproc.annotate.grammars.simpleComp.SimpleCharStream
 
ReInit(Reader) - Method in class uk.ac.bbk.dcs.automed.qproc.annotate.grammars.simpleComp.SimpleCharStream
 
ReInit(InputStream, int, int, int) - Method in class uk.ac.bbk.dcs.automed.qproc.annotate.grammars.simpleComp.SimpleCharStream
 
ReInit(InputStream) - Method in class uk.ac.bbk.dcs.automed.qproc.annotate.grammars.simpleComp.SimpleCharStream
 
ReInit(InputStream, int, int) - Method in class uk.ac.bbk.dcs.automed.qproc.annotate.grammars.simpleComp.SimpleCharStream
 
ReInit(InputStream) - Method in class uk.ac.bbk.dcs.automed.qproc.annotate.grammars.simpleComp.SimpleComp
 
ReInit(Reader) - Method in class uk.ac.bbk.dcs.automed.qproc.annotate.grammars.simpleComp.SimpleComp
 
ReInit(SimpleCompTokenManager) - Method in class uk.ac.bbk.dcs.automed.qproc.annotate.grammars.simpleComp.SimpleComp
 
ReInit(SimpleCharStream) - Method in class uk.ac.bbk.dcs.automed.qproc.annotate.grammars.simpleComp.SimpleCompTokenManager
 
ReInit(SimpleCharStream, int) - Method in class uk.ac.bbk.dcs.automed.qproc.annotate.grammars.simpleComp.SimpleCompTokenManager
 
ReInit(Reader, int, int, int) - Method in class uk.ac.bbk.dcs.automed.qproc.annotate.grammars.simpleCompAppend.SimpleCharStream
 
ReInit(Reader, int, int) - Method in class uk.ac.bbk.dcs.automed.qproc.annotate.grammars.simpleCompAppend.SimpleCharStream
 
ReInit(Reader) - Method in class uk.ac.bbk.dcs.automed.qproc.annotate.grammars.simpleCompAppend.SimpleCharStream
 
ReInit(InputStream, int, int, int) - Method in class uk.ac.bbk.dcs.automed.qproc.annotate.grammars.simpleCompAppend.SimpleCharStream
 
ReInit(InputStream) - Method in class uk.ac.bbk.dcs.automed.qproc.annotate.grammars.simpleCompAppend.SimpleCharStream
 
ReInit(InputStream, int, int) - Method in class uk.ac.bbk.dcs.automed.qproc.annotate.grammars.simpleCompAppend.SimpleCharStream
 
ReInit(InputStream) - Method in class uk.ac.bbk.dcs.automed.qproc.annotate.grammars.simpleCompAppend.SimpleCompAppend
 
ReInit(Reader) - Method in class uk.ac.bbk.dcs.automed.qproc.annotate.grammars.simpleCompAppend.SimpleCompAppend
 
ReInit(SimpleCompAppendTokenManager) - Method in class uk.ac.bbk.dcs.automed.qproc.annotate.grammars.simpleCompAppend.SimpleCompAppend
 
ReInit(SimpleCharStream) - Method in class uk.ac.bbk.dcs.automed.qproc.annotate.grammars.simpleCompAppend.SimpleCompAppendTokenManager
 
ReInit(SimpleCharStream, int) - Method in class uk.ac.bbk.dcs.automed.qproc.annotate.grammars.simpleCompAppend.SimpleCompAppendTokenManager
 
ReInit(Reader, int, int, int) - Method in class uk.ac.bbk.dcs.automed.qproc.annotate.grammars.simpleCompAppendMonus.SimpleCharStream
 
ReInit(Reader, int, int) - Method in class uk.ac.bbk.dcs.automed.qproc.annotate.grammars.simpleCompAppendMonus.SimpleCharStream
 
ReInit(Reader) - Method in class uk.ac.bbk.dcs.automed.qproc.annotate.grammars.simpleCompAppendMonus.SimpleCharStream
 
ReInit(InputStream, int, int, int) - Method in class uk.ac.bbk.dcs.automed.qproc.annotate.grammars.simpleCompAppendMonus.SimpleCharStream
 
ReInit(InputStream) - Method in class uk.ac.bbk.dcs.automed.qproc.annotate.grammars.simpleCompAppendMonus.SimpleCharStream
 
ReInit(InputStream, int, int) - Method in class uk.ac.bbk.dcs.automed.qproc.annotate.grammars.simpleCompAppendMonus.SimpleCharStream
 
ReInit(InputStream) - Method in class uk.ac.bbk.dcs.automed.qproc.annotate.grammars.simpleCompAppendMonus.SimpleCompAppendMonus
 
ReInit(Reader) - Method in class uk.ac.bbk.dcs.automed.qproc.annotate.grammars.simpleCompAppendMonus.SimpleCompAppendMonus
 
ReInit(SimpleCompAppendMonusTokenManager) - Method in class uk.ac.bbk.dcs.automed.qproc.annotate.grammars.simpleCompAppendMonus.SimpleCompAppendMonus
 
ReInit(SimpleCharStream) - Method in class uk.ac.bbk.dcs.automed.qproc.annotate.grammars.simpleCompAppendMonus.SimpleCompAppendMonusTokenManager
 
ReInit(SimpleCharStream, int) - Method in class uk.ac.bbk.dcs.automed.qproc.annotate.grammars.simpleCompAppendMonus.SimpleCompAppendMonusTokenManager
 
ReInit(Reader, int, int, int) - Method in class uk.ac.bbk.dcs.automed.qproc.translators.xquery.SimpleCharStream
 
ReInit(Reader, int, int) - Method in class uk.ac.bbk.dcs.automed.qproc.translators.xquery.SimpleCharStream
 
ReInit(Reader) - Method in class uk.ac.bbk.dcs.automed.qproc.translators.xquery.SimpleCharStream
 
ReInit(InputStream, int, int, int) - Method in class uk.ac.bbk.dcs.automed.qproc.translators.xquery.SimpleCharStream
 
ReInit(InputStream) - Method in class uk.ac.bbk.dcs.automed.qproc.translators.xquery.SimpleCharStream
 
ReInit(InputStream, int, int) - Method in class uk.ac.bbk.dcs.automed.qproc.translators.xquery.SimpleCharStream
 
ReInit(InputStream) - Method in class uk.ac.bbk.dcs.automed.qproc.translators.xquery.XQuery2IQL
 
ReInit(Reader) - Method in class uk.ac.bbk.dcs.automed.qproc.translators.xquery.XQuery2IQL
 
ReInit(XQuery2IQLTokenManager) - Method in class uk.ac.bbk.dcs.automed.qproc.translators.xquery.XQuery2IQL
 
ReInit(SimpleCharStream) - Method in class uk.ac.bbk.dcs.automed.qproc.translators.xquery.XQuery2IQLTokenManager
 
ReInit(SimpleCharStream, int) - Method in class uk.ac.bbk.dcs.automed.qproc.translators.xquery.XQuery2IQLTokenManager
 
reinitialise() - Method in class uk.ac.bbk.dcs.automed.qproc.FunctionTable
Reinitialises the function table, i.e.
REL_BETWEEN_ELEMENTS - Static variable in class uk.ac.ic.doc.automed.matching.relationships.Compatibility
 
REL_BETWEEN_ELEMENTS - Static variable in class uk.ac.ic.doc.automed.matching.relationships.Disjointness
 
REL_BETWEEN_ELEMENTS - Static variable in class uk.ac.ic.doc.automed.matching.relationships.Equivalence
 
REL_BETWEEN_ELEMENTS - Static variable in class uk.ac.ic.doc.automed.matching.relationships.Incompatibility
 
REL_BETWEEN_ELEMENTS - Static variable in class uk.ac.ic.doc.automed.matching.relationships.Overlapness
 
REL_BETWEEN_ELEMENTS - Static variable in class uk.ac.ic.doc.automed.matching.relationships.Subset
 
REL_BETWEEN_ELEMENTS - Static variable in class uk.ac.ic.doc.automed.matching.relationships.Superset
 
RelationalOutputter - Class in uk.ac.ic.doc.automed.reps
Class the materialise an SQL oriented AutoMed schema
RelationalOutputter(Schema) - Constructor for class uk.ac.ic.doc.automed.reps.RelationalOutputter
Creates a new instance of RelationalOutputter with a default output directory
RelationalOutputter(AutoMedPeer, Schema) - Constructor for class uk.ac.ic.doc.automed.reps.RelationalOutputter
Creates a new instance of RelationalOutputter with a default output directory for use with an AutoMed peer
RelationalOutputter(Schema, Schema, String, String, String, String) - Constructor for class uk.ac.ic.doc.automed.reps.RelationalOutputter
Creates a new instance of RelationalOutputter with a given DB url, username and password
RelationshipConflictException - Exception in uk.ac.ic.doc.automed.matching
 
RelationshipConflictException(String) - Constructor for exception uk.ac.ic.doc.automed.matching.RelationshipConflictException
 
RelationshipConflictException() - Constructor for exception uk.ac.ic.doc.automed.matching.RelationshipConflictException
 
RelationshipConflictException(String, Throwable) - Constructor for exception uk.ac.ic.doc.automed.matching.RelationshipConflictException
 
RelationshipExtractor - Class in uk.ac.ic.doc.automed.matching
The class that represents the RelationshipExtractor component in the schema matching architecture.
RelationshipExtractor() - Constructor for class uk.ac.ic.doc.automed.matching.RelationshipExtractor
 
RelationshipExtractorException - Exception in uk.ac.ic.doc.automed.matching
 
RelationshipExtractorException(String) - Constructor for exception uk.ac.ic.doc.automed.matching.RelationshipExtractorException
 
RelationshipExtractorException() - Constructor for exception uk.ac.ic.doc.automed.matching.RelationshipExtractorException
 
RelationshipExtractorException(String, Throwable) - Constructor for exception uk.ac.ic.doc.automed.matching.RelationshipExtractorException
 
RelationshipExtractorException(Throwable) - Constructor for exception uk.ac.ic.doc.automed.matching.RelationshipExtractorException
 
RelationSKJEliminator - Class in uk.ac.bbk.dcs.automed.qproc.optimise.optimisers
This class removes self-join of relations over their key arising from the AutoMed relational model encoding For example, [{k1,n,m}|{p1,n}<-[{{k1,..,kn},a1}|{k1,..,kn,a1,a2}<-<>]; {p2,m}<-[{{k1,..,kn},a2}|{k1,..,kn,a1,a2}<-<>]; p1 = p2] becomes: [{{k1,...,kn},a1,a2}|{k1,..,kn,a1,a2}<-<>] Although table <> may contain several key attributes, we assume that {p1,n} and {p2,m} will be pair The steps for the simplification are: 1.
RelationSKJEliminator() - Constructor for class uk.ac.bbk.dcs.automed.qproc.optimise.optimisers.RelationSKJEliminator
 
RelativeEuclideanClassifier - Class in uk.ac.ic.doc.automed.matching.modules.bidirectionalmap
 
RelativeEuclideanClassifier(Cluster[]) - Constructor for class uk.ac.ic.doc.automed.matching.modules.bidirectionalmap.RelativeEuclideanClassifier
 
reloadModels() - Static method in class uk.ac.ic.doc.automed.reps.Model
This method empties the cached model data and then reloads it from the MDR as if the class had just been loaded.
reloadSchemas() - Static method in class uk.ac.ic.doc.automed.reps.Schema
 
rels - Static variable in class uk.ac.ic.doc.automed.matching.SchemaElementPairRelationship
 
REMOTE - Static variable in class uk.ac.ic.doc.automed.util.LogOutputHandler
Print log messages to a log server
REMOTE_ADDRESS - Static variable in class uk.ac.ic.doc.automed.p2p.communication.ResponseHandler
 
REMOTE_PORT - Static variable in class uk.ac.ic.doc.automed.p2p.communication.ResponseHandler
 
remove() - Method in class uk.ac.bbk.dcs.automed.qproc.iql.ASGCollectionIterator
 
remove() - Method in class uk.ac.ic.doc.automed.qproc.cache.DefaultQueryCache
Implements mandatory methods of the ListIterator interface
remove() - Method in class uk.ac.ic.doc.automed.reps.AccessMethod
Remove this AccessMethod from the repository.
remove() - Method in class uk.ac.ic.doc.automed.reps.Construct
Removes the Construct from the repository if it is not being used, and removes all the construct's Scheme elements.
remove() - Method in class uk.ac.ic.doc.automed.reps.Model
Removes the Model from the repository.
remove(String) - Static method in class uk.ac.ic.doc.automed.reps.Protocol
Removes the protocol with the given protocolName.
remove(int) - Static method in class uk.ac.ic.doc.automed.reps.Protocol
Removes the protocol with the given protocol PID.
remove() - Method in class uk.ac.ic.doc.automed.reps.Protocol
 
remove(String) - Static method in class uk.ac.ic.doc.automed.reps.Schema
Removes the Schema with the given schemaName.
remove() - Method in class uk.ac.ic.doc.automed.reps.Schema
Removes the Schema from the repository.
remove() - Method in class uk.ac.ic.doc.automed.reps.SchemaObject
Remove the SchemaObject form the repository.
remove() - Method in class uk.ac.ic.doc.automed.reps.Transformation
Removes this Transformation from the repository.
remove(PersistentKey) - Method in class uk.ac.ic.doc.automed.util.db.QueryCacheSQLAdapter
Remove a single record identified by a common key from the database
remove(PersistentKey) - Method in class uk.ac.ic.doc.automed.util.persist.PersistentDB
Remove a single record identified by a common key from the database
remove(PersistentKey) - Method in interface uk.ac.ic.doc.automed.util.persist.PersistentHandler
Remove a single record identified by a common key from the database
removeAccessMethod(int) - Static method in class uk.ac.ic.doc.automed.STR
Removes an access method from the STR.
removeAccessMethodBySID(int) - Static method in class uk.ac.ic.doc.automed.STR
Removes all access methods for the given schema identifier (SID).
removeAccessMethods() - Method in class uk.ac.ic.doc.automed.reps.Schema
Remove all AccessMethods recorded for this schema.
removeAll() - Method in class uk.ac.ic.doc.automed.util.db.QueryCacheSQLAdapter
Clear database content
removeAll() - Method in class uk.ac.ic.doc.automed.util.persist.PersistentDB
Clear database content
removeAll() - Method in interface uk.ac.ic.doc.automed.util.persist.PersistentHandler
Clear database content
removeAllSchemes(int) - Static method in class uk.ac.ic.doc.automed.STR
Removes all the schemes associated with the given schema object.
removeAssociationBySFID(int) - Static method in class uk.ac.ic.doc.automed.SSMDR
Removes all associations for the given ssdformat identifier (SFID).
removeButtons(Component, int) - Method in class uk.ac.ic.doc.automed.editor.DetachedTextEditor
Remove control buttons (close, maximise, etc.) from dialog (and frame) component Adapted from the code example at http://forum.java.sun.com
removeConstruct(int) - Static method in class uk.ac.ic.doc.automed.MDR
Remove the construct.
removeConstructFromMap(Construct) - Static method in class uk.ac.ic.doc.automed.reps.Construct
Deprecated. Remove constructs using @link remove() which will also do the job of this method Removes from the HashMap that holds the CID and ref to all Construct objs.
removeConstructFromMap(String) - Method in class uk.ac.ic.doc.automed.reps.Model
THIS METHOD DOESN'T DO ANYTHING AT THE MOMENT Sets the content of a particular position of the model's constructs list.
removeConstructScheme(int, int) - Static method in class uk.ac.ic.doc.automed.MDR
Remove the construct.
removeCurrentNode(DefaultMutableTreeNode) - Method in class uk.ac.ic.doc.automed.editor.PatternWritingTool.DynamicTree
Remove the currently selected node.
removeDB(String) - Method in class uk.ac.ic.doc.automed.util.persist.PersistentDBController
Delete database
removeDocument(Collection, Document, String) - Method in class uk.ac.bbk.dcs.automed.xml.wrappers.EXISTWrapper
 
removeDuplicates() - Method in class uk.ac.bbk.dcs.automed.qproc.functions.ModifiedArray
 
removeDuplicates(SchemaElementPair[]) - Method in class uk.ac.ic.doc.automed.matching.Integrator
Returns a duplicate-free SchemaElementPair array.
removeDuplicates(SchemaElementPairRelationship[]) - Method in class uk.ac.ic.doc.automed.matching.RelationshipExtractor
 
removeDuplicates(PersistentKey) - Method in interface uk.ac.ic.doc.automed.util.persist.DuplicatePersistentHandler
Remove all entries associated to a key from the database
removeDuplicates(PersistentKey) - Method in class uk.ac.ic.doc.automed.util.persist.PersistentDB
Remove all entries associated to a key from the database
removeElem(Object) - Method in class uk.ac.ic.doc.automed.editor.autolayout.ExpandedArrayList
 
removeHighlights(JTextComponent) - Method in class uk.ac.ic.doc.automed.editor.PatternWritingTool
/* Methods to highlight text in the textarea /
removeInBetweenSchemas() - Static method in class uk.ac.bbk.dcs.automed.evolution.EvolutionUtility
Retracts schemas in the pathway from s1 to s2, WITHOUT retracting s2.
removeInBetweenSchemas() - Static method in class uk.ac.bbk.dcs.automed.evolution2.EvolutionUtility
 
removeLayoutComponent(Component) - Method in class uk.ac.ic.doc.automed.editor.PinBoardLayout
 
removeModel(int) - Static method in class uk.ac.ic.doc.automed.MDR
Remove the modelling language.
removeModel(String) - Static method in class uk.ac.ic.doc.automed.reps.Model
Removes the Model with the given modelName.
removeModelChangeListener(ModelChangeListener) - Method in class uk.ac.ic.doc.automed.reps.Model
 
removeModelsListener(ModelsListener) - Static method in class uk.ac.ic.doc.automed.reps.Model
Remove an instance of any class implementing interface ModelsListener such that it will no longer be notified of any adding or deleting of models that may occur.
removeNestTransform(String, String, String, String) - Method in class uk.ac.ic.doc.automed.xmlschema.JTreeTransform
 
removeNetworkChangeListener(NetworkChangeListener) - Method in class uk.ac.ic.doc.automed.reps.Network
 
removeNetworksListener(NetworksListener) - Static method in class uk.ac.ic.doc.automed.reps.Network
 
removePattern(int) - Static method in class uk.ac.ic.doc.automed.SSMDR
Removes a pattern from the SSMDR.
removePeer(String) - Method in class uk.ac.ic.doc.automed.p2p.P2PRegistry
 
removePeers(String, String, String) - Method in class uk.ac.ic.doc.automed.p2p.directory.P2PDirectoryRepository
Remove peers at flush-time.
removeProtocol(int) - Static method in class uk.ac.ic.doc.automed.STR
Removes the name of a protocol from the STR.
removeRecursion(SchemaObject, SchemaObject, String, String) - Method in class uk.ac.ic.doc.automed.reps.HDMTransformations
Remove recursion
removeSchema(int) - Static method in class uk.ac.ic.doc.automed.STR
Removes a schema from the STR.
removeSchemaChangeListener(SchemaChangeListener) - Method in class uk.ac.ic.doc.automed.reps.Schema
 
removeSchemaNames(String) - Static method in class uk.ac.ic.doc.rodex.qproc.Util
Remove schema names from IQL query string
removeSchemaObject(SchemaObject, SchemaObject[]) - Method in class uk.ac.ic.doc.automed.matching.SQLIntegrator
Return a SchemaObject array by removing the specified object from the input array.
removeSchemaObject(int) - Static method in class uk.ac.ic.doc.automed.STR
Removes a schema object from the STR.
removeSchemaObjects() - Method in class uk.ac.ic.doc.automed.reps.Schema
Removes all schema objects that belong to the schema, i.e., the schema's SchemaObject list is emptied.
removeSchemasListener(SchemasListener) - Static method in class uk.ac.ic.doc.automed.reps.Schema
Remove an instance of any class implementing interface SchemasListener such that it will no longer be notified of any adding or deleting of schemas that may occur.
removeScheme(int, int) - Static method in class uk.ac.ic.doc.automed.STR
Removes a particular position of an object's scheme from the STR.
removeSSDFormat(int) - Static method in class uk.ac.ic.doc.automed.SSMDR
Removes a ssd format from the SSMDR.
removeSupressedTokenType(int) - Method in class uk.ac.ic.doc.automed.xml.XMLReader
 
removeSupressedTokenTypes(int[]) - Method in class uk.ac.ic.doc.automed.xml.XMLReader
 
removeTransformation(String, String) - Static method in class uk.ac.ic.doc.automed.reps.Transformation
Removes the transformation between two given schemas.
removeTransformation(int, int) - Static method in class uk.ac.ic.doc.automed.STR
Removes a transformation from the STR.
removeXMLDSS(String, String) - Static method in class uk.ac.bbk.dcs.automed.xml.wrappers.NXDBSchemaManager
 
rename - Static variable in class uk.ac.ic.doc.automed.reps.Syntax.Token
 
renameCompVars(Cell, Set, HashMap) - Method in class uk.ac.bbk.dcs.automed.qproc.optimise.optimisers.UnnestOptimiser
Renames any variables of the input comprehension that appear in the input set of variables.
RenameUID - Class in uk.ac.bbk.dcs.automed.xml.functions
Function that produces element UIDs based on the two arguments passed to the function.
RenameUID() - Constructor for class uk.ac.bbk.dcs.automed.xml.functions.RenameUID
 
repair(boolean) - Static method in class uk.ac.ic.doc.automed.STR
Perform some operators to repair the STR repository after it has become corrupt.
repairExisting() - Method in class uk.ac.bbk.dcs.automed.evolution1.Evolution
 
repairExisting() - Method in class uk.ac.bbk.dcs.automed.evolution1.ExtensionalSchemaEvolution
 
repairExisting() - Method in class uk.ac.bbk.dcs.automed.evolution1.VirtualSchemaEvolution
 
repairExisting() - Method in class uk.ac.bbk.dcs.automed.evolution2.schemaEvolution.ExtensionalSchemaEvolution
 
repairExisting() - Method in class uk.ac.bbk.dcs.automed.evolution2.schemaEvolution.IntegratedSchemaEvolution
 
repairExisting() - Method in class uk.ac.bbk.dcs.automed.evolution2.schemaEvolution.SchemaEvolution
 
repairExistingOneStep() - Method in class uk.ac.bbk.dcs.automed.evolution1.Evolution
 
repairExistingOneStep() - Method in class uk.ac.bbk.dcs.automed.evolution1.ExtensionalSchemaEvolution
 
repairExistingOneStep() - Method in class uk.ac.bbk.dcs.automed.evolution1.VirtualSchemaEvolution
 
repairExistingOneStep() - Method in class uk.ac.bbk.dcs.automed.evolution2.schemaEvolution.ExtensionalSchemaEvolution
 
repairExistingOneStep() - Method in class uk.ac.bbk.dcs.automed.evolution2.schemaEvolution.IntegratedSchemaEvolution
 
repairExistingOneStep() - Method in class uk.ac.bbk.dcs.automed.evolution2.schemaEvolution.SchemaEvolution
 
repairPathway(Pathway) - Method in class uk.ac.bbk.dcs.automed.evolution.schemaModelEvolution.SMEvolution
 
repairPathway(Transformation[]) - Method in class uk.ac.bbk.dcs.automed.evolution.schemaModelEvolution.SMEvolution
 
repairPathway(Pathway) - Method in class uk.ac.bbk.dcs.automed.evolution2.schemaEvolution.SchemaEvolution
 
repairPathway(Transformation[]) - Method in class uk.ac.bbk.dcs.automed.evolution2.schemaEvolution.SchemaEvolution
 
replace(String, String) - Static method in class uk.ac.ic.doc.automed.Util
Returns a new string resulting from replacing all occurences of substring in string s with \ followed by substring.
replaceAll(String, String, String) - Static method in class uk.ac.ic.doc.automed.Util
Replace all occurences of a substring with a new string
replaceFunctions(ASG, QueryVariable, List) - Static method in class uk.ac.bbk.dcs.automed.qproc.iql.ASGComprehensionMiniCon
Replace query functions which are mapped to a specific QueryVariable with a new set of functions.
replaceString(String, String, String) - Static method in class uk.ac.bbk.dcs.automed.dataWarehousing.util.Tools4DW
 
replaceVarWithHashMap(Cell, HashMap) - Static method in class uk.ac.bbk.dcs.automed.dataWarehousing.util.Tools4DW
 
replaceVarWithHashMap(Cell, HashMap, boolean) - Static method in class uk.ac.bbk.dcs.automed.dataWarehousing.util.Tools4DW
 
REPLY_FAIL - Static variable in class uk.ac.ic.doc.automed.p2p.protocol.P2PConstants
 
REPLY_OK - Static variable in class uk.ac.ic.doc.automed.p2p.protocol.P2PConstants
 
REPLY_UNKNOWN - Static variable in class uk.ac.ic.doc.automed.p2p.protocol.P2PConstants
 
REPLY_UNKNOWN_REQUEST - Static variable in class uk.ac.ic.doc.automed.p2p.protocol.P2PConstants
 
replySODefinition(AbstractMessage, ResponseHandler) - Method in class uk.ac.ic.doc.rodex.p2p.protocol.QEP
Look up the definition queries for a schema object and return it to the requesting peer.
replyToMessage(AbstractMessage, OutputStream) - Method in class uk.ac.ic.doc.automed.p2p.communication.AbstractDaemon
 
reportException(Exception) - Static method in class uk.ac.ic.doc.automed.editor.GUITool
 
reportException(String, Exception) - Static method in class uk.ac.ic.doc.automed.editor.GUITool
 
ReportException - Class in uk.ac.ic.doc.automed.editor
A Window to display a Java Exception.
ReportException(String, Exception) - Constructor for class uk.ac.ic.doc.automed.editor.ReportException
 
ReportException() - Constructor for class uk.ac.ic.doc.automed.editor.ReportException
 
reportException(String, Exception) - Static method in class uk.ac.ic.doc.automed.editor.ReportException
Provide a single window to share in a JVM for the reporting of all exceptions in that
repository - Variable in class uk.ac.ic.doc.automed.p2p.directory.P2PDirectory
 
RepositoryAccessException - Exception in uk.ac.ic.doc.automed
The class of exceptions generated when executing updates and queries to TTSR, TTR, TER, SMR.
RepositoryAccessException(String) - Constructor for exception uk.ac.ic.doc.automed.RepositoryAccessException
 
RepositoryAccessException(String, Exception) - Constructor for exception uk.ac.ic.doc.automed.RepositoryAccessException
 
representsBag() - Method in class uk.ac.bbk.dcs.automed.qproc.iql.Cell
Returns true if the Cell is the root of an ASG representing a bag
representsBagComprehension() - Method in class uk.ac.bbk.dcs.automed.qproc.iql.Cell
 
representsBSingleton() - Method in class uk.ac.bbk.dcs.automed.qproc.iql.Cell
 
representsCollection() - Method in class uk.ac.bbk.dcs.automed.qproc.iql.Cell
Returns true if the Cell is the root of an ASG representing a collection
representsCollectionSingleton() - Method in class uk.ac.bbk.dcs.automed.qproc.iql.Cell
 
representsComprehension() - Method in class uk.ac.bbk.dcs.automed.qproc.iql.Cell
 
representsConstructor() - Method in class uk.ac.bbk.dcs.automed.qproc.iql.Cell
 
representsConstructor(String) - Method in class uk.ac.bbk.dcs.automed.qproc.iql.Cell
 
representsFunction(String, int) - Method in class uk.ac.bbk.dcs.automed.qproc.iql.Cell
 
representsFunction() - Method in class uk.ac.bbk.dcs.automed.qproc.iql.Cell
 
representsGenerator() - Method in class uk.ac.bbk.dcs.automed.qproc.iql.Cell
Returns true if the Cell is the root of an ASG representing a generator
representsLambdaExpression() - Method in class uk.ac.bbk.dcs.automed.qproc.iql.Cell
 
representsLet() - Method in class uk.ac.bbk.dcs.automed.qproc.iql.Cell
 
representsList() - Method in class uk.ac.bbk.dcs.automed.qproc.iql.Cell
Returns true if the Cell is the root of an ASG representing a list
representsListComprehension() - Method in class uk.ac.bbk.dcs.automed.qproc.iql.Cell
 
representsLSingleton() - Method in class uk.ac.bbk.dcs.automed.qproc.iql.Cell
 
representsNestedComprehension() - Method in class uk.ac.bbk.dcs.automed.qproc.iql.Cell
 
representsPair() - Method in class uk.ac.bbk.dcs.automed.qproc.iql.Cell
Returns true if tag is "Tuple2"
representsSet() - Method in class uk.ac.bbk.dcs.automed.qproc.iql.Cell
Returns true if the Cell is the root of an ASG representing a set
representsSetComprehension() - Method in class uk.ac.bbk.dcs.automed.qproc.iql.Cell
 
representsSpecial() - Method in class uk.ac.bbk.dcs.automed.qproc.iql.Cell
 
representsSpecial(String, int) - Method in class uk.ac.bbk.dcs.automed.qproc.iql.Cell
 
representsSSingleton() - Method in class uk.ac.bbk.dcs.automed.qproc.iql.Cell
 
representsTuple() - Method in class uk.ac.bbk.dcs.automed.qproc.iql.Cell
Returns the arity of the tuple, or -1 if Cell does not represent a tuple
Request - Class in uk.ac.ic.doc.automed.p2p.protocol
 
Request(String) - Constructor for class uk.ac.ic.doc.automed.p2p.protocol.Request
 
request - Variable in class uk.ac.ic.doc.automed.p2p.protocol.Request
 
Request.Pathway - Class in uk.ac.ic.doc.automed.p2p.protocol
 
Request.Pathway(String, String) - Constructor for class uk.ac.ic.doc.automed.p2p.protocol.Request.Pathway
 
Request.PathwayToSource - Class in uk.ac.ic.doc.automed.p2p.protocol
 
Request.PathwayToSource(String) - Constructor for class uk.ac.ic.doc.automed.p2p.protocol.Request.PathwayToSource
 
Request.Port - Class in uk.ac.ic.doc.automed.p2p.protocol
 
Request.Port(String) - Constructor for class uk.ac.ic.doc.automed.p2p.protocol.Request.Port
 
Request.Query - Class in uk.ac.ic.doc.automed.p2p.protocol
 
Request.Query(String, String) - Constructor for class uk.ac.ic.doc.automed.p2p.protocol.Request.Query
 
Request.Register - Class in uk.ac.ic.doc.automed.p2p.protocol
 
Request.Register(String, int) - Constructor for class uk.ac.ic.doc.automed.p2p.protocol.Request.Register
 
Request.Remove - Class in uk.ac.ic.doc.automed.p2p.protocol
 
Request.Remove(String) - Constructor for class uk.ac.ic.doc.automed.p2p.protocol.Request.Remove
 
Request.Schema - Class in uk.ac.ic.doc.automed.p2p.protocol
 
Request.Schema(String) - Constructor for class uk.ac.ic.doc.automed.p2p.protocol.Request.Schema
 
Request.Unknown - Class in uk.ac.ic.doc.automed.p2p.protocol
 
Request.Unknown(String, String[]) - Constructor for class uk.ac.ic.doc.automed.p2p.protocol.Request.Unknown
 
REQUEST_GET_PORT - Static variable in class uk.ac.ic.doc.automed.p2p.protocol.P2PConstants
 
REQUEST_ID - Static variable in class uk.ac.ic.doc.automed.p2p.protocol.P2PConstants
 
REQUEST_PATHWAY - Static variable in class uk.ac.ic.doc.automed.p2p.protocol.P2PConstants
 
REQUEST_PATHWAY_TO_SOURCE - Static variable in class uk.ac.ic.doc.automed.p2p.protocol.P2PConstants
 
REQUEST_QUERY - Static variable in class uk.ac.ic.doc.automed.p2p.protocol.P2PConstants
 
REQUEST_REGISTER_PEER - Static variable in class uk.ac.ic.doc.automed.p2p.protocol.P2PConstants
static{ try { Object[]fileLines = Util.parseFile(PUBLIC_SCHEMA_DIRECTORY_CFG); for (int i=0;i-1 && l.indexOf(COMMENT)!=0) { String kw=l.substring(0,equalPos).trim().toLowerCase(); String val=l.substring(equalPos+1).trim(); if (kw.equals("directory")) { int colonPos=val.indexOf(":"); if (colonPos>-1) { directoryHost= InetAddress.getByName(val.substring(0,colonPos)); directoryPort=Integer.parseInt(val.substring(colonPos+1)); } else directoryHost=InetAddress.getByName(val);; } else if (kw.equals("registryport")) { registryPort=Integer.parseInt(val); } } else if (l.indexOf(COMMENT)!=0 && l.length()>0) { System.out.println("Warning: Incorrect line "+fileLines[i]); } } } catch (Exception e) { Logger.error("ERROR: Unable to set directory/registry", e); throw new InconsistentException("P2P services failed to read valid "+ "Directory and Registry details: Please correct "+ PUBLIC_SCHEMA_DIRECTORY_CFG,e); } }
REQUEST_REMOVE_PEER - Static variable in class uk.ac.ic.doc.automed.p2p.protocol.P2PConstants
 
REQUEST_SCHEMA - Static variable in class uk.ac.ic.doc.automed.p2p.protocol.P2PConstants
 
requestAbstractPathToSource(String) - Method in class uk.ac.ic.doc.rodex.p2p.Peer
Request abstract pathway to source from directory service
requestAbstractPathwayToSource(String) - Method in class uk.ac.ic.doc.rodex.p2p.protocol.SICP
Peer->DS: A peer invokes this method to request the directory service about possible pathways to data source for a public schema that the peer knows
requestAdvertise(String, Map) - Method in class uk.ac.ic.doc.automed.p2p.MessageHandler
 
RequestListener - Interface in uk.ac.ic.doc.automed.p2p.communication
 
requestPathToSource(String, String, String) - Method in class uk.ac.ic.doc.automed.p2p.AutoMedPeer
 
requestPathToSource(String, String, String) - Method in class uk.ac.ic.doc.automed.p2p.MessageHandler
 
requestPathway(String, String, String, String) - Method in class uk.ac.ic.doc.automed.p2p.AutoMedPeer
 
requestPathway(String, String, String, String) - Method in class uk.ac.ic.doc.automed.p2p.MessageHandler
 
requestQuery(String, String, String, String) - Method in class uk.ac.ic.doc.automed.p2p.AutoMedPeer
 
requestQuery(String, String, String, String) - Method in class uk.ac.ic.doc.automed.p2p.MessageHandler
 
requestQuery(String, String, String, String) - Method in class uk.ac.ic.doc.rodex.p2p.Peer
Override request query method
requestSchema(String, String, String) - Method in class uk.ac.ic.doc.automed.p2p.AutoMedPeer
 
requestSODefinition(QuerySubGoal, AutoMedPeer.PeerProcessDescription) - Method in class uk.ac.ic.doc.rodex.p2p.protocol.QEP
Request the query definitions for a schema object (represented by a QuerySubGoal object
required - Variable in class uk.ac.ic.doc.automed.wrappers.xsdomobject.XSDOMObject
Whether or not this is a required attribute
ReservedTokens - Class in uk.ac.bbk.dcs.automed.qproc.iql
 
ReservedTokens() - Constructor for class uk.ac.bbk.dcs.automed.qproc.iql.ReservedTokens
 
reset() - Method in class uk.ac.ic.doc.automed.p2p.directory.FlushTimeHelper
Reset the hold-time process when necessary
reset() - Method in class uk.ac.ic.doc.automed.p2p.directory.HelloTimeHelper
Reset the hold-time process when necessary
reset() - Method in class uk.ac.ic.doc.automed.p2p.directory.HoldTimeHelper
Reset the hold-time process when necessary
resetEditor(JTextArea, JCheckBox) - Method in class uk.ac.ic.doc.automed.editor.TextEditor
Give default settings to text area
resolveDisjoints() - Method in class uk.ac.ic.doc.automed.matching.SQLIntegrator
Resolves the structural conflicts of the schemas for disjointness relationships.
resolveEntity(String, String) - Method in class uk.ac.ic.doc.automed.xml.XMLReader
 
resolveNamingConflicts() - Method in class uk.ac.ic.doc.automed.matching.Integrator
 
resolveNamingConflicts() - Method in class uk.ac.ic.doc.automed.matching.SQLIntegrator
Resolves the naming conflicts of the schemas.
resolveOverlaps() - Method in class uk.ac.ic.doc.automed.matching.SQLIntegrator
Resolves the structural conflicts of the schemas for overlapness relationships.
resolveStructuralConflicts() - Method in class uk.ac.ic.doc.automed.matching.Integrator
 
resolveStructuralConflicts() - Method in class uk.ac.ic.doc.automed.matching.SQLIntegrator
Resolves the structural conflicts of the schemas.
resolveSubsumptions() - Method in class uk.ac.ic.doc.automed.matching.SQLIntegrator
Resolves the structural conflicts of the schemas for subsumption relationships.
ResponseHandler - Class in uk.ac.ic.doc.automed.p2p.communication
 
ResponseHandler(String, Map) - Constructor for class uk.ac.ic.doc.automed.p2p.communication.ResponseHandler
Creates a new instance of ResponseHandler
restartThread() - Method in class uk.ac.ic.doc.automed.util.thread.AsynchThread
To restart, stop and start it
restartThread() - Method in class uk.ac.ic.doc.automed.util.thread.TimedThread
To restart, stop and start it
restructure() - Method in class uk.ac.bbk.dcs.automed.xml.xmldssGraph.XMLDSSRestructurer
After instantiating the class, this method restructures the source XMLDSS to match the target, by transforming both source and target schemas.
restructure() - Method in class uk.ac.bbk.dcs.automed.xml.XMLRestructurer
After instantiating the class, this method restructures the source XMLDSS to match the target, by transforming both source and target schemas.
RESULT - Static variable in class uk.ac.ic.doc.automed.p2p.protocol.P2PConstants
 
resultArea - Variable in class uk.ac.ic.doc.automed.editor.IQLTool
 
resultArea() - Method in class uk.ac.ic.doc.automed.editor.IQLTool
 
resultList - Variable in class uk.ac.bbk.dcs.automed.xml.wrappers.XMLWrapper
 
resultSetToArray(ResultSet) - Static method in class uk.ac.ic.doc.automed.Util
 
retract(String) - Static method in class uk.ac.bbk.dcs.automed.evolution.EvolutionUtility
 
retract(String) - Static method in class uk.ac.bbk.dcs.automed.evolution2.EvolutionUtility
 
retract() - Method in class uk.ac.ic.doc.automed.reps.AccessMethod
Remove this AccessMethod, and any other classes that are dependent upon its existance.
retract() - Method in class uk.ac.ic.doc.automed.reps.Construct
Removes the Construct from the repository, and all other objects which depend upon it.
retract() - Method in class uk.ac.ic.doc.automed.reps.Model
Removes the Model from the repository, together with all associated information --- in particular all Constructs belonging to the model are removed, and hence all SchemaObjects, and hence all Transformations on those objects.
retract() - Method in class uk.ac.ic.doc.automed.reps.Schema
Removes the Schema from the repository, together with any SchemaObjects left in the schema, and any Transformations that link to this schema.
retract(String) - Static method in class uk.ac.ic.doc.automed.reps.Schema
Removes any Schema with the given name from the repository, together with any SchemaObjects left in the schema, and any Transformations that link to this schema.
retract() - Method in class uk.ac.ic.doc.automed.reps.SchemaObject
Removes the SchemaObject from the repository, and all other objects which depend upon it.
retract() - Method in class uk.ac.ic.doc.automed.reps.Transformation
 
retract(String) - Static method in class uk.ac.ic.doc.automed.ssd.Pattern
 
retract(String) - Static method in class uk.ac.ic.doc.automed.ssd.SSDFormat
 
retractAll() - Static method in class uk.ac.bbk.dcs.automed.evolution.EvolutionUtility
 
retractAll() - Static method in class uk.ac.bbk.dcs.automed.evolution2.EvolutionUtility
 
retractModel(Model) - Method in class uk.ac.ic.doc.automed.p2p.tree.ObjectBuilder
Retract model
retractSchema(Schema) - Method in class uk.ac.ic.doc.automed.p2p.tree.ObjectBuilder
 
RETURN - Static variable in interface uk.ac.bbk.dcs.automed.qproc.translators.xquery.XQuery2IQLConstants
 
returnExpr(HashMap) - Method in class uk.ac.bbk.dcs.automed.qproc.translators.xquery.XQuery2IQL
 
returnGraph(String) - Method in class uk.ac.bbk.dcs.automed.qproc.functions.ModifiedArray
 
returnInternalSeperators(String) - Static method in class uk.ac.bbk.dcs.automed.hdmstore.Edge
If commas that are not at the 'top level' have been removed, replace them e.g.
returnInternalSpaces(String) - Static method in class uk.ac.bbk.dcs.automed.hdmstore.HdmStoreCmd
Changeback any seperators within an edge thats a span to spaces
returnTag(String) - Static method in class uk.ac.bbk.dcs.automed.qproc.iql.ReservedTokens
 
reveal(Object) - Method in class uk.ac.ic.doc.automed.editor.Gui
Reveal an object from the GUI, such that it is displayed it in any of its graphical views of the repository.
reveal(Gui, Object[]) - Static method in class uk.ac.ic.doc.automed.editor.Gui
 
revealConstruct(Construct) - Method in class uk.ac.ic.doc.automed.editor.Gui
Reveal all SchemaObject of a certain Construct type that have been previously hidden.
revealModel(Model) - Method in class uk.ac.ic.doc.automed.editor.Gui
Reveal all SchemaObject of a certain Model type that have been previously hidden.
revealPositionable(Positionable) - Method in class uk.ac.ic.doc.automed.editor.Gui
Reveal a Positionable that has been previously hidden.
reverseKeywords - Static variable in class uk.ac.ic.doc.automed.reps.Syntax.Token
 
reverseRelationshipPair(SchemaElementPairRelationship) - Method in class uk.ac.ic.doc.automed.matching.RelationshipExtractor
Returns the reverse relationship for the specified pair.
reverseRelationshipPairs(SchemaElementPairRelationship[]) - Method in class uk.ac.ic.doc.automed.matching.RelationshipExtractor
 
rewind() - Method in class uk.ac.ic.doc.automed.wrappers.AutoMedResult
 
rewrite(ASG, Schema, int) - Method in class uk.ac.ic.doc.automed.qproc.cache.DefaultQueryCache
Rewrite a query associated to a schema s using the local query cache
rewrite() - Method in class uk.ac.ic.doc.rodex.qproc.MiniConQueryRewriter
Implements method in QueryWriter abstract parent class
Rewrite query using views based on the MiniCon algorithm following a two-phase process:
rewrite() - Method in class uk.ac.ic.doc.rodex.qproc.MiniConQueryRewriterAdaptive
 
rewrite(ASG, Schema, int) - Method in interface uk.ac.ic.doc.rodex.qproc.QueryRewritable
Rewrite a query associated to a schema s using the local query cache
rewrite() - Method in class uk.ac.ic.doc.rodex.qproc.QueryRewriteProcessor
Rewrite query to produce QueryRewriterResult object
rewrite() - Method in class uk.ac.ic.doc.rodex.qproc.QueryRewriter
Rewrite query
rewrite() - Method in class uk.ac.ic.doc.rodex.qproc.RangeBasedQueryRewriter
Rewrite an existing query into a set of equivalent sub-queries based on range analysis.
RewritingNotExistException - Exception in uk.ac.ic.doc.rodex.qproc
RewritingNotExistException.java
RewritingNotExistException(String, Throwable) - Constructor for exception uk.ac.ic.doc.rodex.qproc.RewritingNotExistException
Creates a new instance of QueryRewriterException
RewritingNotExistException(String) - Constructor for exception uk.ac.ic.doc.rodex.qproc.RewritingNotExistException
 
RIGHT_BRACKET - Static variable in class uk.ac.ic.doc.rodex.qproc.Util
right bracket for scheme name, default = '>>'
RIGHT_VAR_BRACKET - Static variable in class uk.ac.ic.doc.rodex.qproc.Util
 
rightBrace - Static variable in class uk.ac.ic.doc.automed.reps.Syntax.Token
 
rightBracket - Static variable in class uk.ac.ic.doc.automed.reps.Syntax.Token
 
role - Variable in class uk.ac.ic.doc.automed.p2p.AutoMedPeer
 
ROLE_AUTOMED_PEER - Static variable in class uk.ac.ic.doc.automed.p2p.AutoMedPeer
 
ROLE_DSP - Static variable in class uk.ac.ic.doc.automed.p2p.AutoMedPeer
 
ROLE_PEER - Static variable in class uk.ac.ic.doc.automed.p2p.AutoMedPeer
 
roleAndMultiplicityString(Graphics2D, String, String, Point, Point) - Method in class uk.ac.ic.doc.automed.editor.drawables.DrawUMLAssociationArc
Place a string near the p1 end of a line between p1 and p2 such that it will not overlap the object p1 might connect to.
root - Variable in class uk.ac.bbk.dcs.automed.qproc.iql.ASG
 
root() - Method in class uk.ac.bbk.dcs.automed.qproc.iql.ASG
Returns the root of the ASG
Root - Class in uk.ac.ic.doc.automed.p2p.tree
 
Root() - Constructor for class uk.ac.ic.doc.automed.p2p.tree.Root
 
Root(String) - Constructor for class uk.ac.ic.doc.automed.p2p.tree.Root
 
ROOT_TYPE_NAME - Static variable in class uk.ac.ic.doc.automed.wrappers.SQLWrapperFactory
 
RootLayout - Class in uk.ac.ic.doc.automed.editor.layout
 
RootLayout() - Constructor for class uk.ac.ic.doc.automed.editor.layout.RootLayout
 
rootNode - Variable in class uk.ac.ic.doc.automed.editor.PatternWritingTool.DynamicTree
 
round(double) - Static method in class uk.ac.ic.doc.automed.editor.autolayout.AutoLayoutPositionable
Convert double to int.
row - Variable in class uk.ac.ic.doc.automed.util.db.DBRecord
 
RP - Static variable in interface uk.ac.bbk.dcs.automed.qproc.translators.xquery.XQuery2IQLConstants
 
RRB - Static variable in class uk.ac.bbk.dcs.automed.qproc.iql.FSym
 
RRB - Static variable in class uk.ac.bbk.dcs.automed.qproc.iql.QSym
 
RSB - Static variable in class uk.ac.bbk.dcs.automed.qproc.iql.QSym
 
RSB - Static variable in interface uk.ac.bbk.dcs.automed.qproc.translators.xquery.XQuery2IQLConstants
 
Rule - Interface in uk.ac.bbk.dcs.automed.qproc.optimise
 
run(SchemaObject[]) - Method in interface uk.ac.ic.doc.automed.editor.layout.LayoutInterface
 
run(SchemaObject[]) - Method in class uk.ac.ic.doc.automed.editor.layout.RootLayout
 
run() - Method in class uk.ac.ic.doc.automed.editor.MatchingTool
 
run() - Method in class uk.ac.ic.doc.automed.p2p.communication.AbstractDaemon
 
run() - Method in class uk.ac.ic.doc.automed.util.thread.AsynchThread
Implements the thread-running method
run() - Method in class uk.ac.ic.doc.automed.util.thread.TimedThread
Implements the thread-running method
runAction() - Method in class uk.ac.ic.doc.automed.p2p.communication.AbstractClient
Implement communication process
runAction() - Method in class uk.ac.ic.doc.automed.p2p.communication.AbstractServer
Implement communication process
runAction() - Method in class uk.ac.ic.doc.automed.p2p.communication.TCPClient
Implement TCP communication process
runAction() - Method in class uk.ac.ic.doc.automed.p2p.communication.TCPServer
Implements the runnable action
runAction() - Method in class uk.ac.ic.doc.automed.p2p.communication.UDPClient
Implement UDP communication process
runAction() - Method in class uk.ac.ic.doc.automed.p2p.communication.UDPServer
Implements the runnable action
runAction() - Method in class uk.ac.ic.doc.automed.p2p.directory.FlushTimeHelper
Implements Theadable interface This method acts as the background process at the server to update peer
status.
runAction() - Method in class uk.ac.ic.doc.automed.p2p.directory.HelloTimeHelper
Implements Theadable interface This method acts as the background process at the server to update peer
status.
runAction() - Method in class uk.ac.ic.doc.automed.p2p.directory.HoldTimeHelper
Implements Theadable interface This method acts as the background process at the server to update peer
status.
runAction() - Method in class uk.ac.ic.doc.automed.util.queue.QueueWorker
Get the next job in queue to process
runAction() - Method in interface uk.ac.ic.doc.automed.util.thread.Threadable
 
RunAll - Class in uk.ac.bbk.dcs.automed.xml.experiments.subclass.set1
Class Task Description
RunAll() - Constructor for class uk.ac.bbk.dcs.automed.xml.experiments.subclass.set1.RunAll
 
runQuery(String) - Static method in class uk.ac.bbk.dcs.automed.xml.experiments.thesis.Books1Query
 
runQuery(String) - Static method in class uk.ac.bbk.dcs.automed.xml.experiments.thesis.Books2Query
 
runQuery(String) - Static method in class uk.ac.bbk.dcs.automed.xml.experiments.thesis.BooksQuery
 
runScript() - Method in class uk.ac.bbk.dcs.automed.xml.relational.TransformationsIssuer
 

S

s - Variable in class uk.ac.ic.doc.automed.wrappers.AutoMedWrapper
 
safeIQL(String) - Static method in class uk.ac.ic.doc.automed.wrappers.AutoMedWrapperFactory
Process an indentifier to make it safe to use in the IQL language.
safeNextToken() - Method in class uk.ac.ic.doc.automed.reps.Syntax.Tokenizer
 
safeSQLString(String) - Static method in class uk.ac.ic.doc.automed.Util
Provide a version of a string that is safe to use in JDBC update statements.
sameScheme(SchemaObject) - Method in class uk.ac.ic.doc.automed.reps.SchemaObject
Determines whether or not the scheme is the same as that of the given SchemaObject.
SATISFIES - Static variable in interface uk.ac.bbk.dcs.automed.qproc.translators.xquery.XQuery2IQLConstants
 
saveDegrees(String) - Method in class uk.ac.ic.doc.automed.matching.modules.AbstractModule
 
SAX_ERROR - Static variable in interface uk.ac.ic.doc.automed.xml.XMLifyConstants
 
SAXMaterialiser - Class in uk.ac.bbk.dcs.automed.xml.materialisation
Class Task Description
SAXMaterialiser() - Constructor for class uk.ac.bbk.dcs.automed.xml.materialisation.SAXMaterialiser
 
SAXWrapper - Class in uk.ac.bbk.dcs.automed.xml.wrappers
A lower level wrapper that conforms to the XMLWrapper class.
SAXWrapper(AccessMethod, String) - Constructor for class uk.ac.bbk.dcs.automed.xml.wrappers.SAXWrapper
 
SAXWrapperFactory - Class in uk.ac.bbk.dcs.automed.xml.wrappers
 
SAXWrapperFactory() - Constructor for class uk.ac.bbk.dcs.automed.xml.wrappers.SAXWrapperFactory
 
SCHEMA - Static variable in class uk.ac.ic.doc.automed.p2p.MessageHandler
 
SCHEMA - Static variable in class uk.ac.ic.doc.automed.p2p.protocol.P2PConstants
Context
schema - Variable in class uk.ac.ic.doc.automed.p2p.protocol.Request.PathwayToSource
 
schema - Variable in class uk.ac.ic.doc.automed.p2p.protocol.Request.Query
 
schema - Variable in class uk.ac.ic.doc.automed.p2p.protocol.Request.Schema
 
Schema - Class in uk.ac.ic.doc.automed.reps
The Schema class represents a database schema as a set of SchemaObjects.
Schema(String) - Constructor for class uk.ac.ic.doc.automed.reps.Schema
Deprecated. Not the correct way to do things!!!! see #createSchema() Just create an empty Schema object with name dmle 9/11/2005
schema - Static variable in class uk.ac.ic.doc.automed.reps.Syntax.Token
 
SCHEMA_ADDED - Static variable in class uk.ac.ic.doc.automed.reps.SchemaChangeEvent
 
SCHEMA_AWARE - Static variable in class uk.ac.ic.doc.automed.wrappers.SQLWrapperFactory
A feature option to model SQL schemas.
SCHEMA_CHANGED - Static variable in class uk.ac.ic.doc.automed.reps.NetworkChangeEvent
 
SCHEMA_CHANGED - Static variable in class uk.ac.ic.doc.automed.reps.SchemaChangeEvent
 
SCHEMA_LIST - Static variable in class uk.ac.ic.doc.automed.p2p.protocol.P2PConstants
Context
SCHEMA_MERGING - Static variable in class uk.ac.ic.doc.automed.wrappers.SQLWrapperFactory
 
SCHEMA_NAME - Static variable in class uk.ac.ic.doc.automed.p2p.protocol.P2PConstants
Field: SCHEMA_NAME - a string of schema name
SCHEMA_NAME_SUFFIX - Static variable in class uk.ac.ic.doc.automed.p2p.protocol.P2PConstants
 
SCHEMA_OBJECT - Static variable in class uk.ac.ic.doc.automed.p2p.protocol.P2PConstants
 
SCHEMA_REGISTRATION - Static variable in class uk.ac.ic.doc.automed.p2p.protocol.P2PConstants
 
SCHEMA_REMOVED - Static variable in class uk.ac.ic.doc.automed.reps.SchemaChangeEvent
 
SchemaAccessibility - Class in uk.ac.ic.doc.rodex.p2p.messages.applicationlayer
SchemaAccessibility.java
SchemaAccessibility(String, String, String[], int, int) - Constructor for class uk.ac.ic.doc.rodex.p2p.messages.applicationlayer.SchemaAccessibility
Creates a new instance of SchemaAccessibility
schemaAdded(SchemaChangeEvent) - Method in class uk.ac.ic.doc.automed.editor.Gui.EditorFrame
 
schemaAdded(SchemaChangeEvent) - Method in interface uk.ac.ic.doc.automed.reps.SchemasListener
 
SchemaAdvertiser - Class in uk.ac.ic.doc.automed.p2p
 
SchemaAdvertiser(AutoMedPeer) - Constructor for class uk.ac.ic.doc.automed.p2p.SchemaAdvertiser
 
SchemaAdvertMsg - Class in uk.ac.ic.doc.rodex.p2p.messages.applicationlayer
SchemaAdvertMsg.java

The schema advertisement message sent by a peer to the directory service peer to advertise its public schemas
SchemaAdvertMsg(List) - Constructor for class uk.ac.ic.doc.rodex.p2p.messages.applicationlayer.SchemaAdvertMsg
Creates a new instance of HelloMsg
schemaChanged(NetworkChangeEvent) - Method in class uk.ac.ic.doc.automed.editor.Gui.EditorFrame
 
schemaChanged(SchemaChangeEvent) - Method in class uk.ac.ic.doc.automed.editor.Gui.EditorFrame
 
schemaChanged(NetworkChangeEvent) - Method in interface uk.ac.ic.doc.automed.reps.NetworkChangeListener
 
schemaChanged(SchemaChangeEvent) - Method in interface uk.ac.ic.doc.automed.reps.SchemaChangeListener
 
SchemaChangeEvent - Class in uk.ac.ic.doc.automed.reps
 
SchemaChangeEvent(int, Positionable) - Constructor for class uk.ac.ic.doc.automed.reps.SchemaChangeEvent
 
SchemaChangeListener - Interface in uk.ac.ic.doc.automed.reps
 
SchemaDescription - Class in uk.ac.ic.doc.automed.p2p.directory
 
SchemaDescription(String, String, String) - Constructor for class uk.ac.ic.doc.automed.p2p.directory.SchemaDescription
 
SchemaDescription(String, String, String, String, String) - Constructor for class uk.ac.ic.doc.automed.p2p.directory.SchemaDescription
 
SchemaDescription(Map) - Constructor for class uk.ac.ic.doc.automed.p2p.directory.SchemaDescription
 
schemaDoc - Variable in class uk.ac.bbk.dcs.automed.xml.wrappers.XMLWrapper
 
SchemaElement - Class in uk.ac.ic.doc.automed.matching
The SchemaElement class to wrap schema objects in schema matching.
SchemaElement(SchemaObject, boolean) - Constructor for class uk.ac.ic.doc.automed.matching.SchemaElement
Instantiates a schema element.
SchemaElementPair - Class in uk.ac.ic.doc.automed.matching
The SchemaElementPair class that represents a pair of schema elements.
SchemaElementPair(SchemaElement, SchemaElement) - Constructor for class uk.ac.ic.doc.automed.matching.SchemaElementPair
Constructs a SchemaElementPair object.
SchemaElementPairRelationship - Class in uk.ac.ic.doc.automed.matching
The SchemaElementPairRelationship class that represents a pair of schema elements and their relationship.
SchemaElementPairRelationship(SchemaElement, SchemaElement, SemanticRelationship) - Constructor for class uk.ac.ic.doc.automed.matching.SchemaElementPairRelationship
Constructs a SchemaElementPairRelationship object.
SchemaEvent - Class in uk.ac.ic.doc.automed.p2p.directory
SchemaEvent.java The event object that encapsulates all schema change events occur in the directory
SchemaEvent(int, SchemaDescription, PeerDescription, Object) - Constructor for class uk.ac.ic.doc.automed.p2p.directory.SchemaEvent
Creates a new instance of PeerEvent
SchemaEventListener - Interface in uk.ac.ic.doc.automed.p2p.directory
SchemaEventListener.java An interface for listeners of schema registration/update events
SchemaEvolution - Class in uk.ac.bbk.dcs.automed.evolution2.schemaEvolution
 
SchemaEvolution(int, boolean) - Constructor for class uk.ac.bbk.dcs.automed.evolution2.schemaEvolution.SchemaEvolution
 
SchemaEvolutionException - Exception in uk.ac.bbk.dcs.automed.evolution2.schemaEvolution
 
SchemaEvolutionException(String) - Constructor for exception uk.ac.bbk.dcs.automed.evolution2.schemaEvolution.SchemaEvolutionException
 
schemaEvolutionType - Variable in class uk.ac.bbk.dcs.automed.evolution.schemaModelEvolution.SMEvolution
 
schemaEvolutionType - Variable in class uk.ac.bbk.dcs.automed.evolution2.schemaEvolution.SchemaEvolution
 
SchemaGetter - Class in uk.ac.ic.doc.automed.p2p
 
SchemaGetter(AutoMedPeer) - Constructor for class uk.ac.ic.doc.automed.p2p.SchemaGetter
 
SchemaInfoFrame - Class in uk.ac.ic.doc.automed.p2p.gui
A window containing information about peers implementing a single public schema, plus the ability to perform basic operations a peer for the public schema.
SchemaInfoFrame(PeerApplication) - Constructor for class uk.ac.ic.doc.automed.p2p.gui.SchemaInfoFrame
 
schemaMap - Variable in class uk.ac.ic.doc.automed.p2p.tree.ObjectBuilder
 
SchemaMapGenerator - Class in uk.ac.ic.doc.automed.reps
 
SchemaMapGenerator() - Constructor for class uk.ac.ic.doc.automed.reps.SchemaMapGenerator
 
SchemaMatchingSQLWrapperFactory - Class in uk.ac.ic.doc.automed.wrappers
An AutoMed high wrapper factory for creating SQLWrapper instances.
SchemaMatchingSQLWrapperFactory() - Constructor for class uk.ac.ic.doc.automed.wrappers.SchemaMatchingSQLWrapperFactory
Constructor.
schemaName(String) - Method in class uk.ac.bbk.dcs.automed.hdmstore.HdmStore
Given an HDM store name return the name of the schema it stores data for
schemaName() - Method in class uk.ac.bbk.dcs.automed.qproc.annotate.grammars.schemes.Schemes
 
schemaName() - Method in class uk.ac.bbk.dcs.automed.qproc.annotate.grammars.simpleComp.SimpleComp
 
schemaName() - Method in class uk.ac.bbk.dcs.automed.qproc.annotate.grammars.simpleCompAppend.SimpleCompAppend
 
schemaName() - Method in class uk.ac.bbk.dcs.automed.qproc.annotate.grammars.simpleCompAppendMonus.SimpleCompAppendMonus
 
SchemaObject - Class in uk.ac.ic.doc.automed.reps
The SchemaObject class
SchemaObjectAbstraction - Class in uk.ac.ic.doc.automed.p2p.overlay
SchemaObjectAbstraction.java
SchemaObjectAbstraction(long, String, String, String[]) - Constructor for class uk.ac.ic.doc.automed.p2p.overlay.SchemaObjectAbstraction
Creates a new instance of SchemaObjectAbstraction
SchemaObjectBuilder - Class in uk.ac.ic.doc.automed.p2p.tree
 
SchemaObjectBuilder(Root) - Constructor for class uk.ac.ic.doc.automed.p2p.tree.SchemaObjectBuilder
Creates a new instance of SchemaObjectBuilder
SchemaPublisher - Class in uk.ac.ic.doc.automed.p2p
 
SchemaPublisher(AutoMedPeer) - Constructor for class uk.ac.ic.doc.automed.p2p.SchemaPublisher
 
SchemaRegMsg - Class in uk.ac.ic.doc.rodex.p2p.messages.applicationlayer
SchemaRegMsg.java

The Schema Registration sent by directory service peer to a registered peer asking for available schemas.
SchemaRegMsg() - Constructor for class uk.ac.ic.doc.rodex.p2p.messages.applicationlayer.SchemaRegMsg
Creates a new instance of HelloMsg
schemaRemoved(SchemaChangeEvent) - Method in class uk.ac.ic.doc.automed.editor.Gui.EditorFrame
 
schemaRemoved(SchemaChangeEvent) - Method in interface uk.ac.ic.doc.automed.reps.SchemaChangeListener
 
schemaRemoved(SchemaChangeEvent) - Method in interface uk.ac.ic.doc.automed.reps.SchemasListener
 
schemas - Variable in class uk.ac.ic.doc.automed.p2p.directory.ModelDescription
 
SchemasListener - Interface in uk.ac.ic.doc.automed.reps
Classes implementing this interface my get notification of any additions or deletions of Schema instances.
SchemasNotIdenticalException - Exception in uk.ac.ic.doc.automed.reps
This exception is generated when an attempt to join to transformation pathways via createIdentTransformation() fails due to the schemas' object schemes being different.
SchemasNotIdenticalException(Schema, Schema, SchemaObject[], SchemaObject[]) - Constructor for exception uk.ac.ic.doc.automed.reps.SchemasNotIdenticalException
 
schemaToEvolve - Variable in class uk.ac.bbk.dcs.automed.evolution.schemaModelEvolution.SMEvolution
 
schemaToEvolve - Variable in class uk.ac.bbk.dcs.automed.evolution2.schemaEvolution.SchemaEvolution
 
schemaUIDDoc - Variable in class uk.ac.bbk.dcs.automed.xml.wrappers.XMLWrapper
 
scheme - Static variable in class uk.ac.bbk.dcs.automed.qproc.iql.Cell
 
Scheme - Class in uk.ac.ic.doc.automed.reps
The Scheme class is used to described each element of the scheme of SchemaObject.
Scheme(SchemaObject, int, SchemaObject, boolean, int, boolean) - Constructor for class uk.ac.ic.doc.automed.reps.Scheme
Creates a new scheme for a schema object.
scheme - Static variable in class uk.ac.ic.doc.automed.reps.Syntax.Token
 
SCHEME_FIELD_SEPARATOR - Static variable in class uk.ac.ic.doc.rodex.qproc.Util
seprator between fields, default = ','
SCHEME_HDM_TYPE_C - Static variable in interface uk.ac.ic.doc.automed.Constants
Deprecated. HDM type of construct scheme - constraints
SCHEME_HDM_TYPE_MAXIMUM - Static variable in interface uk.ac.ic.doc.automed.Constants
Deprecated.  
SCHEME_HDM_TYPE_MINIMUM - Static variable in interface uk.ac.ic.doc.automed.Constants
Deprecated.  
SCHEME_HDM_TYPE_N1 - Static variable in interface uk.ac.ic.doc.automed.Constants
Deprecated. HDM type of construct scheme - new node at position 1
SCHEME_HDM_TYPE_N2 - Static variable in interface uk.ac.ic.doc.automed.Constants
Deprecated. HDM type of construct scheme - new node at position 2
SCHEME_HDM_TYPE_P1 - Static variable in interface uk.ac.ic.doc.automed.Constants
Deprecated. HDM type of construct scheme - pre-existing node at position 1
SCHEME_HDM_TYPE_P2 - Static variable in interface uk.ac.ic.doc.automed.Constants
Deprecated. HDM type of construct scheme - pre-existing node at position 2
SCHEME_NAME_SEPARATOR - Static variable in class uk.ac.ic.doc.rodex.qproc.Util
separator b/w schema name and scheme name, default = ':'
SCHEME_TYPE_ALTERNATION - Static variable in interface uk.ac.ic.doc.automed.Constants
Deprecated. Scheme type of construct scheme
SCHEME_TYPE_CONSTRUCT - Static variable in interface uk.ac.ic.doc.automed.Constants
Deprecated. Scheme type of construct scheme
SCHEME_TYPE_MAXIMUM - Static variable in interface uk.ac.ic.doc.automed.Constants
Deprecated.  
SCHEME_TYPE_MINIMUM - Static variable in interface uk.ac.ic.doc.automed.Constants
Deprecated.  
SCHEME_TYPE_NAME - Static variable in interface uk.ac.ic.doc.automed.Constants
Deprecated. Scheme type of construct scheme
SCHEME_TYPE_SEQUENCE - Static variable in interface uk.ac.ic.doc.automed.Constants
Deprecated. Scheme type of construct scheme
schemeElement() - Method in class uk.ac.bbk.dcs.automed.qproc.annotate.grammars.schemes.Schemes
 
schemeElement() - Method in class uk.ac.bbk.dcs.automed.qproc.annotate.grammars.simpleComp.SimpleComp
 
schemeElement() - Method in class uk.ac.bbk.dcs.automed.qproc.annotate.grammars.simpleCompAppend.SimpleCompAppend
 
schemeElement() - Method in class uk.ac.bbk.dcs.automed.qproc.annotate.grammars.simpleCompAppendMonus.SimpleCompAppendMonus
 
SchemeInfo - Class in uk.ac.bbk.dcs.automed.qproc.iql
Every Cell with tag scheme has a SchemeInfo object in its data field.
SchemeInfo(String, String, String, String, String, String) - Constructor for class uk.ac.bbk.dcs.automed.qproc.iql.SchemeInfo
 
SchemeInfo(String) - Constructor for class uk.ac.bbk.dcs.automed.qproc.iql.SchemeInfo
 
SchemeInfo(String, String) - Constructor for class uk.ac.bbk.dcs.automed.qproc.iql.SchemeInfo
 
SchemeInfo(SchemaObject) - Constructor for class uk.ac.bbk.dcs.automed.qproc.iql.SchemeInfo
 
SchemeInstances - Class in uk.ac.ic.doc.automed.wrappers
Provides a representation of the data associated with a scheme in an AutoMed Schema.
SchemeInstances() - Constructor for class uk.ac.ic.doc.automed.wrappers.SchemeInstances
 
SchemeQuery - Class in uk.ac.ic.doc.automed.wrappers
A generic representation of query expressions as trees, where each SchemeQuery has an operator type, and 0 or more fields that have a field type
SchemeQuery() - Constructor for class uk.ac.ic.doc.automed.wrappers.SchemeQuery
 
Schemes - Class in uk.ac.bbk.dcs.automed.qproc.annotate.grammars.schemes
 
Schemes(InputStream) - Constructor for class uk.ac.bbk.dcs.automed.qproc.annotate.grammars.schemes.Schemes
 
Schemes(Reader) - Constructor for class uk.ac.bbk.dcs.automed.qproc.annotate.grammars.schemes.Schemes
 
Schemes(SchemesTokenManager) - Constructor for class uk.ac.bbk.dcs.automed.qproc.annotate.grammars.schemes.Schemes
 
schemes - Variable in class uk.ac.bbk.dcs.automed.qproc.iql.ASGComprehension
 
SchemesConstants - Interface in uk.ac.bbk.dcs.automed.qproc.annotate.grammars.schemes
 
schemeSeq() - Method in class uk.ac.bbk.dcs.automed.qproc.annotate.grammars.schemes.Schemes
 
schemeSeq() - Method in class uk.ac.bbk.dcs.automed.qproc.annotate.grammars.simpleComp.SimpleComp
 
schemeSeq() - Method in class uk.ac.bbk.dcs.automed.qproc.annotate.grammars.simpleCompAppend.SimpleCompAppend
 
schemeSeq() - Method in class uk.ac.bbk.dcs.automed.qproc.annotate.grammars.simpleCompAppendMonus.SimpleCompAppendMonus
 
SchemesTokenManager - Class in uk.ac.bbk.dcs.automed.qproc.annotate.grammars.schemes
 
SchemesTokenManager(SimpleCharStream) - Constructor for class uk.ac.bbk.dcs.automed.qproc.annotate.grammars.schemes.SchemesTokenManager
 
SchemesTokenManager(SimpleCharStream, int) - Constructor for class uk.ac.bbk.dcs.automed.qproc.annotate.grammars.schemes.SchemesTokenManager
 
SCOMP - Static variable in interface uk.ac.bbk.dcs.automed.qproc.annotate.grammars.simpleComp.SimpleCompConstants
 
SCOMP - Static variable in interface uk.ac.bbk.dcs.automed.qproc.annotate.grammars.simpleCompAppend.SimpleCompAppendConstants
 
SCOMP - Static variable in interface uk.ac.bbk.dcs.automed.qproc.annotate.grammars.simpleCompAppendMonus.SimpleCompAppendMonusConstants
 
SComprehension - Class in uk.ac.bbk.dcs.automed.qproc.functions.internal
 
SComprehension() - Constructor for class uk.ac.bbk.dcs.automed.qproc.functions.internal.SComprehension
 
scoreInstance(AbstractStringDistance, String, String[]) - Method in class uk.ac.ic.doc.automed.matching.modules.intervals.JaccardExistenceModule
 
scoreInstance(AbstractStringDistance, String, String[]) - Method in class uk.ac.ic.doc.automed.matching.modules.intervals.JaroExistenceModule
 
scoreInstance(AbstractStringDistance, String[], String[][]) - Method in class uk.ac.ic.doc.automed.matching.modules.probability.binary.AttributeJaccardExistenceModule
 
scoreInstance(AbstractStringDistance, String, String[]) - Method in class uk.ac.ic.doc.automed.matching.modules.probability.binary.JaccardAtomicExistenceModule
 
scoreInstance(AbstractStringDistance, String, String[]) - Method in class uk.ac.ic.doc.automed.matching.modules.probability.binary.JaccardExistenceModule
 
scoreInstance(AbstractStringDistance, String, String[]) - Method in class uk.ac.ic.doc.automed.matching.modules.probability.binary.JaroExistenceModule
 
scoreInstance(AbstractStringDistance, String, String[]) - Method in class uk.ac.ic.doc.automed.matching.modules.probability.senary.JaccardExistenceModule
 
scoreInstance(AbstractStringDistance, String, String[]) - Method in class uk.ac.ic.doc.automed.matching.modules.probability.senary.JaroExistenceModule
 
searchAndReplace(Cell, Map[], Set) - Method in class uk.ac.bbk.dcs.automed.qproc.reformulate.CompositeViewMap
Goes through an IQL query and replaces each scheme encountered with its view definition found in the AtomicViewMaps
searchAndReplace(Cell, Map[], Set) - Method in class uk.ac.bbk.dcs.automed.qproc.reformulate.LAVInvRulesViewMap
LAV view construction may not find all the constructs in target schema for the constructs in the source schema.
searchDescendants(String, Schema, Schema) - Static method in class uk.ac.bbk.dcs.automed.evolution.schemaModelEvolution.ExtensionalSchemaEvolution
 
SECOND - Static variable in class uk.ac.ic.doc.automed.wrappers.AutoMedTime
Granularity of one minute
SECONDPASS - Static variable in interface uk.ac.ic.doc.automed.xml.XMLifyConstants
 
SELECT - Static variable in class uk.ac.ic.doc.automed.wrappers.SQLQuery
The SQL SELECT operator; the first field should contain a SQLQuery with a FROM operator, and the remaining fields should be relation attribute identifiers or constants
selectionModes - Variable in class uk.ac.ic.doc.automed.editor.UserActionClass
 
selectNewAutoMedWrapper(String, String, Protocol, String, String, String, AutoMedWrapperFactory) - Static method in class uk.ac.bbk.dcs.automed.xml.wrappers.XMLWrapper
 
selectNewAutoMedWrapper(String, String, Protocol, String, String) - Static method in class uk.ac.ic.doc.automed.wrappers.AutoMedWrapper
Using the url and driver information, try to select an appropriate type of AutoMedWrapper to create.
selectNewAutoMedWrapper(String, String, Protocol, String, String, String, AutoMedWrapperFactory) - Static method in class uk.ac.ic.doc.automed.wrappers.AutoMedWrapper
Using the url and driver information, try to select an appropriate type of AutoMedWrapper to create.
selectPairs(ArrayList, SchemaElement[], int) - Method in class uk.ac.ic.doc.automed.matching.Integrator
Returns an array of schema element pairs which contain the specified constraint elements.
selectPairs(ArrayList, ArrayList) - Method in class uk.ac.ic.doc.automed.matching.Integrator
Returns the maximum SchemaElementPair array which contains the constraint pairs.
SemanticException - Exception in uk.ac.ic.doc.automed.editor
 
SemanticException(String, int) - Constructor for exception uk.ac.ic.doc.automed.editor.SemanticException
 
semanticMappingNames - Static variable in class uk.ac.ic.doc.automed.matching.modules.AbstractModule
 
SemanticRelationship - Class in uk.ac.ic.doc.automed.matching.relationships
The SemanticRelationship class represents the semantic relationship between two schema elements.
SemanticRelationship() - Constructor for class uk.ac.ic.doc.automed.matching.relationships.SemanticRelationship
 
SemiColon - Static variable in class uk.ac.bbk.dcs.automed.qproc.iql.QSym
 
send(BrokerAllQuery, PeerDescription) - Method in class uk.ac.ic.doc.automed.p2p.BrokerRequestSender
 
send(String, String, PeerDescription) - Method in class uk.ac.ic.doc.automed.p2p.BrokerRequestSender
 
send(BrokerAllQuery, Collection) - Method in class uk.ac.ic.doc.automed.p2p.BrokerRequestSender
 
sendDatagram(DatagramSocket, byte[], InetAddress, int) - Static method in class uk.ac.ic.doc.automed.p2p.communication.UDPClient
An utility method for sending a datagram given a socket.
SENDER - Static variable in class uk.ac.ic.doc.automed.p2p.protocol.P2PConstants
 
sendQuery(QueryDescription, AutoMedPeer.PeerProcessDescription) - Method in class uk.ac.ic.doc.rodex.p2p.protocol.QEP
Send a query to the network for execution (client-side)
sendRequest(String, String, AbstractMessage) - Method in class uk.ac.ic.doc.automed.p2p.AutoMedPeer
 
separator - Variable in class uk.ac.ic.doc.automed.wrappers.CSVWrapperFactory
The separator for this file
separator1 - Static variable in class uk.ac.bbk.dcs.automed.xml.utilities.UIDUtility
 
separator2 - Static variable in class uk.ac.bbk.dcs.automed.xml.utilities.UIDUtility
 
separator3 - Static variable in class uk.ac.bbk.dcs.automed.xml.utilities.UIDUtility
 
seqOfVars() - Method in class uk.ac.bbk.dcs.automed.qproc.annotate.grammars.simpleComp.SimpleComp
 
seqOfVars() - Method in class uk.ac.bbk.dcs.automed.qproc.annotate.grammars.simpleCompAppend.SimpleCompAppend
 
seqOfVars() - Method in class uk.ac.bbk.dcs.automed.qproc.annotate.grammars.simpleCompAppendMonus.SimpleCompAppendMonus
 
sequence - Static variable in class uk.ac.ic.doc.automed.reps.Syntax.Token
 
SEQUENCE_TABLE - Static variable in class uk.ac.ic.doc.automed.util.db.SQLFunctions
 
serialise(OutputStream) - Method in class uk.ac.ic.doc.automed.p2p.messages.abstractlayer.AbstractMessage
 
serialise(Object) - Method in class uk.ac.ic.doc.automed.qproc.cache.DefaultQueryCache
Save/synch a cache item object to disk (or database).
serialise(Object) - Method in interface uk.ac.ic.doc.automed.util.persist.Persistence
Save/synch cache content to disk (or database).
serialiseASG(ASG) - Static method in class uk.ac.ic.doc.rodex.p2p.protocol.QEP
Serialise an ASG query into XML representation
serialiseASG(List) - Static method in class uk.ac.ic.doc.rodex.p2p.protocol.QEP
Serialise an ASG query into XML representation
serialiseOutput(AbstractMessage) - Method in class uk.ac.ic.doc.automed.p2p.communication.ResponseHandler
 
serialiseUDPOutput(byte[]) - Method in class uk.ac.ic.doc.automed.p2p.communication.ResponseHandler
Serialise bytes
serialize(OutputStream) - Method in class uk.ac.ic.doc.automed.p2p.tree.Root
 
serialize(Document, OutputStream) - Static method in class uk.ac.ic.doc.automed.p2p.util.XmlHandler
 
ServerFactory - Class in uk.ac.ic.doc.automed.p2p.communication
 
ServerFactory() - Constructor for class uk.ac.ic.doc.automed.p2p.communication.ServerFactory
 
serverHostName - Variable in class uk.ac.ic.doc.automed.p2p.communication.AbstractClient
 
serverPort - Variable in class uk.ac.ic.doc.automed.p2p.communication.AbstractClient
 
serverPort - Variable in class uk.ac.ic.doc.automed.p2p.communication.AbstractServer
 
serverSocket - Variable in class uk.ac.ic.doc.automed.p2p.communication.UDPServer
 
set(int, Pattern) - Method in class uk.ac.ic.doc.automed.matching.modules.bidirectionalmap.Vectors
 
Set1 - Class in uk.ac.bbk.dcs.automed.xml.experiments.other.set1
Class Task Description
Set1() - Constructor for class uk.ac.bbk.dcs.automed.xml.experiments.other.set1.Set1
 
Set1_121x101 - Class in uk.ac.bbk.dcs.automed.xml.experiments.subclass.set1
Class Task Description
Set1_121x101() - Constructor for class uk.ac.bbk.dcs.automed.xml.experiments.subclass.set1.Set1_121x101
 
Set1_181x151 - Class in uk.ac.bbk.dcs.automed.xml.experiments.subclass.set1
Class Task Description
Set1_181x151() - Constructor for class uk.ac.bbk.dcs.automed.xml.experiments.subclass.set1.Set1_181x151
 
Set1_241x201 - Class in uk.ac.bbk.dcs.automed.xml.experiments.subclass.set1
Class Task Description
Set1_241x201() - Constructor for class uk.ac.bbk.dcs.automed.xml.experiments.subclass.set1.Set1_241x201
 
Set1_301x251 - Class in uk.ac.bbk.dcs.automed.xml.experiments.subclass.set1
Class Task Description
Set1_301x251() - Constructor for class uk.ac.bbk.dcs.automed.xml.experiments.subclass.set1.Set1_301x251
 
Set1_61x51 - Class in uk.ac.bbk.dcs.automed.xml.experiments.subclass.set1
Class Task Description
Set1_61x51() - Constructor for class uk.ac.bbk.dcs.automed.xml.experiments.subclass.set1.Set1_61x51
 
Set1A100x20 - Class in uk.ac.bbk.dcs.automed.xml.experiments.other.set1
Class Task Description
Set1A100x20() - Constructor for class uk.ac.bbk.dcs.automed.xml.experiments.other.set1.Set1A100x20
 
Set1A20x20 - Class in uk.ac.bbk.dcs.automed.xml.experiments.other.set1
Class Task Description
Set1A20x20() - Constructor for class uk.ac.bbk.dcs.automed.xml.experiments.other.set1.Set1A20x20
 
Set1A40x20 - Class in uk.ac.bbk.dcs.automed.xml.experiments.other.set1
Class Task Description
Set1A40x20() - Constructor for class uk.ac.bbk.dcs.automed.xml.experiments.other.set1.Set1A40x20
 
Set1A60x20 - Class in uk.ac.bbk.dcs.automed.xml.experiments.other.set1
Class Task Description
Set1A60x20() - Constructor for class uk.ac.bbk.dcs.automed.xml.experiments.other.set1.Set1A60x20
 
Set1A80x20 - Class in uk.ac.bbk.dcs.automed.xml.experiments.other.set1
Class Task Description
Set1A80x20() - Constructor for class uk.ac.bbk.dcs.automed.xml.experiments.other.set1.Set1A80x20
 
Set1B100x20 - Class in uk.ac.bbk.dcs.automed.xml.experiments.other.set1
Class Task Description
Set1B100x20() - Constructor for class uk.ac.bbk.dcs.automed.xml.experiments.other.set1.Set1B100x20
 
Set1B20x20 - Class in uk.ac.bbk.dcs.automed.xml.experiments.other.set1
Class Task Description
Set1B20x20() - Constructor for class uk.ac.bbk.dcs.automed.xml.experiments.other.set1.Set1B20x20
 
Set1B40x20 - Class in uk.ac.bbk.dcs.automed.xml.experiments.other.set1
Class Task Description
Set1B40x20() - Constructor for class uk.ac.bbk.dcs.automed.xml.experiments.other.set1.Set1B40x20
 
Set1B60x20 - Class in uk.ac.bbk.dcs.automed.xml.experiments.other.set1
Class Task Description
Set1B60x20() - Constructor for class uk.ac.bbk.dcs.automed.xml.experiments.other.set1.Set1B60x20
 
Set1B80x20 - Class in uk.ac.bbk.dcs.automed.xml.experiments.other.set1
Class Task Description
Set1B80x20() - Constructor for class uk.ac.bbk.dcs.automed.xml.experiments.other.set1.Set1B80x20
 
Set1C100x20 - Class in uk.ac.bbk.dcs.automed.xml.experiments.other.set1
Class Task Description
Set1C100x20() - Constructor for class uk.ac.bbk.dcs.automed.xml.experiments.other.set1.Set1C100x20
 
Set1C20x20 - Class in uk.ac.bbk.dcs.automed.xml.experiments.other.set1
Class Task Description
Set1C20x20() - Constructor for class uk.ac.bbk.dcs.automed.xml.experiments.other.set1.Set1C20x20
 
Set1C40x20 - Class in uk.ac.bbk.dcs.automed.xml.experiments.other.set1
Class Task Description
Set1C40x20() - Constructor for class uk.ac.bbk.dcs.automed.xml.experiments.other.set1.Set1C40x20
 
Set1C60x20 - Class in uk.ac.bbk.dcs.automed.xml.experiments.other.set1
Class Task Description
Set1C60x20() - Constructor for class uk.ac.bbk.dcs.automed.xml.experiments.other.set1.Set1C60x20
 
Set1C80x20 - Class in uk.ac.bbk.dcs.automed.xml.experiments.other.set1
Class Task Description
Set1C80x20() - Constructor for class uk.ac.bbk.dcs.automed.xml.experiments.other.set1.Set1C80x20
 
Set2A100x20 - Class in uk.ac.bbk.dcs.automed.xml.experiments.other.set2
 
Set2A100x20() - Constructor for class uk.ac.bbk.dcs.automed.xml.experiments.other.set2.Set2A100x20
 
Set2A20x20 - Class in uk.ac.bbk.dcs.automed.xml.experiments.other.set2
 
Set2A20x20() - Constructor for class uk.ac.bbk.dcs.automed.xml.experiments.other.set2.Set2A20x20
 
Set2A40x20 - Class in uk.ac.bbk.dcs.automed.xml.experiments.other.set2
 
Set2A40x20() - Constructor for class uk.ac.bbk.dcs.automed.xml.experiments.other.set2.Set2A40x20
 
Set2A60x20 - Class in uk.ac.bbk.dcs.automed.xml.experiments.other.set2
 
Set2A60x20() - Constructor for class uk.ac.bbk.dcs.automed.xml.experiments.other.set2.Set2A60x20
 
Set2A80x20 - Class in uk.ac.bbk.dcs.automed.xml.experiments.other.set2
 
Set2A80x20() - Constructor for class uk.ac.bbk.dcs.automed.xml.experiments.other.set2.Set2A80x20
 
Set2B100x20 - Class in uk.ac.bbk.dcs.automed.xml.experiments.other.set2
Class Task Description
Set2B100x20() - Constructor for class uk.ac.bbk.dcs.automed.xml.experiments.other.set2.Set2B100x20
 
Set2B20x20 - Class in uk.ac.bbk.dcs.automed.xml.experiments.other.set2
Class Task Description
Set2B20x20() - Constructor for class uk.ac.bbk.dcs.automed.xml.experiments.other.set2.Set2B20x20
 
Set2B40x20 - Class in uk.ac.bbk.dcs.automed.xml.experiments.other.set2
Class Task Description
Set2B40x20() - Constructor for class uk.ac.bbk.dcs.automed.xml.experiments.other.set2.Set2B40x20
 
Set2B60x20 - Class in uk.ac.bbk.dcs.automed.xml.experiments.other.set2
Class Task Description
Set2B60x20() - Constructor for class uk.ac.bbk.dcs.automed.xml.experiments.other.set2.Set2B60x20
 
Set2B80x20 - Class in uk.ac.bbk.dcs.automed.xml.experiments.other.set2
Class Task Description
Set2B80x20() - Constructor for class uk.ac.bbk.dcs.automed.xml.experiments.other.set2.Set2B80x20
 
Set2Bag - Class in uk.ac.bbk.dcs.automed.qproc.functions.typeConversion
 
Set2Bag() - Constructor for class uk.ac.bbk.dcs.automed.qproc.functions.typeConversion.Set2Bag
 
Set2List - Class in uk.ac.bbk.dcs.automed.qproc.functions.typeConversion
 
Set2List() - Constructor for class uk.ac.bbk.dcs.automed.qproc.functions.typeConversion.Set2List
 
Set3A1000x100 - Class in uk.ac.bbk.dcs.automed.xml.experiments.other.set3
Class Task Description
Set3A1000x100() - Constructor for class uk.ac.bbk.dcs.automed.xml.experiments.other.set3.Set3A1000x100
 
Set3A100x100 - Class in uk.ac.bbk.dcs.automed.xml.experiments.other.set3
Class Task Description
Set3A100x100() - Constructor for class uk.ac.bbk.dcs.automed.xml.experiments.other.set3.Set3A100x100
 
Set3A200x100 - Class in uk.ac.bbk.dcs.automed.xml.experiments.other.set3
Class Task Description
Set3A200x100() - Constructor for class uk.ac.bbk.dcs.automed.xml.experiments.other.set3.Set3A200x100
 
Set3A300x100 - Class in uk.ac.bbk.dcs.automed.xml.experiments.other.set3
Class Task Description
Set3A300x100() - Constructor for class uk.ac.bbk.dcs.automed.xml.experiments.other.set3.Set3A300x100
 
Set3A400x100 - Class in uk.ac.bbk.dcs.automed.xml.experiments.other.set3
Class Task Description
Set3A400x100() - Constructor for class uk.ac.bbk.dcs.automed.xml.experiments.other.set3.Set3A400x100
 
Set3A500x100 - Class in uk.ac.bbk.dcs.automed.xml.experiments.other.set3
Class Task Description
Set3A500x100() - Constructor for class uk.ac.bbk.dcs.automed.xml.experiments.other.set3.Set3A500x100
 
Set3B100x100 - Class in uk.ac.bbk.dcs.automed.xml.experiments.other.set3
Class Task Description
Set3B100x100() - Constructor for class uk.ac.bbk.dcs.automed.xml.experiments.other.set3.Set3B100x100
 
Set3B100x200 - Class in uk.ac.bbk.dcs.automed.xml.experiments.other.set3
Class Task Description
Set3B100x200() - Constructor for class uk.ac.bbk.dcs.automed.xml.experiments.other.set3.Set3B100x200
 
Set3B100x300 - Class in uk.ac.bbk.dcs.automed.xml.experiments.other.set3
Class Task Description
Set3B100x300() - Constructor for class uk.ac.bbk.dcs.automed.xml.experiments.other.set3.Set3B100x300
 
Set3B100x400 - Class in uk.ac.bbk.dcs.automed.xml.experiments.other.set3
Class Task Description
Set3B100x400() - Constructor for class uk.ac.bbk.dcs.automed.xml.experiments.other.set3.Set3B100x400
 
Set3B100x500 - Class in uk.ac.bbk.dcs.automed.xml.experiments.other.set3
Class Task Description
Set3B100x500() - Constructor for class uk.ac.bbk.dcs.automed.xml.experiments.other.set3.Set3B100x500
 
set_l(Cell) - Method in class uk.ac.bbk.dcs.automed.qproc.iql.Cell
Sets the reference to the left child of the Cell to n
set_r(Cell) - Method in class uk.ac.bbk.dcs.automed.qproc.iql.Cell
Sets the reference to the left child of the Cell to n
SetA100x52 - Class in uk.ac.bbk.dcs.automed.xml.experiments.other.set0
Class Task Description
SetA100x52() - Constructor for class uk.ac.bbk.dcs.automed.xml.experiments.other.set0.SetA100x52
 
SetA150x52 - Class in uk.ac.bbk.dcs.automed.xml.experiments.other.set0
Class Task Description
SetA150x52() - Constructor for class uk.ac.bbk.dcs.automed.xml.experiments.other.set0.SetA150x52
 
SetA200x52 - Class in uk.ac.bbk.dcs.automed.xml.experiments.other.set0
Class Task Description
SetA200x52() - Constructor for class uk.ac.bbk.dcs.automed.xml.experiments.other.set0.SetA200x52
 
SetA250x52 - Class in uk.ac.bbk.dcs.automed.xml.experiments.other.set0
Class Task Description
SetA250x52() - Constructor for class uk.ac.bbk.dcs.automed.xml.experiments.other.set0.SetA250x52
 
SetA50x52 - Class in uk.ac.bbk.dcs.automed.xml.experiments.other.set0
Class Task Description
SetA50x52() - Constructor for class uk.ac.bbk.dcs.automed.xml.experiments.other.set0.SetA50x52
 
setAbsolutePosition(int, int) - Method in class uk.ac.ic.doc.automed.editor.autolayout.AutoLayoutSchemaObject
 
setAbsolutePosition(int, int) - Method in interface uk.ac.ic.doc.automed.editor.Positionable
 
setAbsolutePosition(int, int) - Method in class uk.ac.ic.doc.automed.reps.Construct
Same behaviour as #setPosition() since Construct instances are not placed relative to other Positionables.
setAbsolutePosition(int, int) - Method in class uk.ac.ic.doc.automed.reps.Model
Same behaviour as #setPosition() since Model instances are not placed relative to other Positionables.
setAbsolutePosition(int, int) - Method in class uk.ac.ic.doc.automed.reps.Network
Same behaviour as #setPosition() since Network instances are not placed relative to other Positionables.
setAbsolutePosition(int, int) - Method in class uk.ac.ic.doc.automed.reps.Schema
Same behaviour as #setPosition() since Schema instances are not placed relative to other Positionables.
setAbsolutePosition(int, int) - Method in class uk.ac.ic.doc.automed.reps.SchemaObject
 
setAccessMethodAWFFeatures(int, int) - Static method in class uk.ac.ic.doc.automed.STR
Sets the AutoMedWrapperFactory featrures of a particular access method.
setAccessMethodDBDriver(int, String) - Static method in class uk.ac.ic.doc.automed.STR
Sets the database driver of a particular access method.
setAccessMethodPassword(int, String) - Static method in class uk.ac.ic.doc.automed.STR
Sets the password of a particular access method.
setAccessMethodPID(int, int) - Static method in class uk.ac.ic.doc.automed.STR
Sets the protocol identifier (PID) of a particular access method.
setAccessMethodProperty(int, String, String) - Static method in class uk.ac.ic.doc.automed.STR
 
setAccessMethodSID(int, int) - Static method in class uk.ac.ic.doc.automed.STR
Sets the schema identifier (SID) of a particular access method.
setAccessMethodURL(int, String) - Static method in class uk.ac.ic.doc.automed.STR
Sets the URL of a particular access method.
setAccessMethodUsername(int, String) - Static method in class uk.ac.ic.doc.automed.STR
Sets the username of a particular access method.
setAccessMethodWrapper(int, String) - Static method in class uk.ac.ic.doc.automed.STR
Sets the wrapper of a particular access method.
setAccompanyingSchemaRootName(String) - Method in class uk.ac.bbk.dcs.automed.xml.wrappers.XMLWrapperFactory
 
setAccompanyingSchemaURI(String) - Method in class uk.ac.bbk.dcs.automed.xml.wrappers.XMLWrapperFactory
 
setAdded() - Method in class uk.ac.ic.doc.automed.wrappers.xsdomobject.ComplexType
Set that this has been added to the AutoMed schema
setAddMissingNodes(boolean) - Method in class uk.ac.bbk.dcs.automed.hdmstore.HdmStore
If you try to add an instance of an edge then all the nodes and edges that are spans of the new edge must already exist in the database.
setAddress(String) - Method in class uk.ac.ic.doc.rodex.p2p.messages.applicationlayer.HelloMsg
 
setAnnotation(int) - Method in class uk.ac.bbk.dcs.automed.qproc.iql.Cell
 
setAnnotator(String) - Method in class uk.ac.bbk.dcs.automed.qproc.QueryProcessorConfiguration
 
setArcDrawable(String) - Method in class uk.ac.ic.doc.automed.reps.Construct
Sets the name of the class used to draw the arc of this Construct in any diagram containing it.
setArgCID(String) - Method in class uk.ac.ic.doc.automed.reps.ConstructScheme
Added to set the argCID value independently when loading models dmle 9/11/2005
setArgConstruct(Construct) - Method in class uk.ac.ic.doc.automed.reps.ConstructScheme
Sets the Construct in the ConstructScheme.
setAtomicPairRelationships(SchemaElementPairRelationship[]) - Method in class uk.ac.ic.doc.automed.matching.RelationshipExtractor
Sets the relationships of pairs of atomic schema elements.
setAtributs(SchemaObject) - Method in class uk.ac.ic.doc.automed.editor.layout.RootLayout
 
setAttribute(int, AutoMedType) - Method in class uk.ac.ic.doc.automed.wrappers.AutoMedTuple
Set the value of a certain field
setAttribute2ElementSwitch(boolean) - Method in class uk.ac.bbk.dcs.automed.xml.xmldssGraph.XMLDSSRestructurer
 
setAttribute2ElementSwitch(boolean) - Method in class uk.ac.bbk.dcs.automed.xml.XMLRestructurer
 
setAttributeDomains(List) - Method in class uk.ac.ic.doc.automed.reps.Schema
Manually set the domain information for some attributes.
setAttributeDomains(List) - Method in class uk.ac.ic.doc.automed.wrappers.AutoMedWrapperFactory
Manually set the domain information for some attributes.
setAutoCommit(boolean) - Method in class uk.ac.ic.doc.automed.util.db.DBAccess
Different data sources understands auto-commit differently.
setAutoCommit(boolean) - Method in class uk.ac.ic.doc.automed.util.db.DBEmbedded
Different data sources understands auto-commit differently.
setAutoCommit(boolean) - Method in class uk.ac.ic.doc.automed.util.db.DBPostgres
Different data sources understands auto-commit differently.
setAutoMedWrapperFactoryFeatures(int) - Method in class uk.ac.ic.doc.automed.reps.AccessMethod
Sets the password used for connecting to the database.
setBackgroundColor(Color) - Method in interface uk.ac.ic.doc.automed.editor.Positionable
 
setBackgroundColor(Color) - Method in class uk.ac.ic.doc.automed.reps.Construct
Set the default background colour to be used from drawing SchemaObjects of this Construct.
setBackgroundColor(Color) - Method in class uk.ac.ic.doc.automed.reps.Model
Set the default background colour to be used from drawing SchemaObjects of this Model.
setBackgroundColor(Color) - Method in class uk.ac.ic.doc.automed.reps.Network
 
setBackgroundColor(Color) - Method in class uk.ac.ic.doc.automed.reps.Schema
 
setBackgroundColor(Color) - Method in class uk.ac.ic.doc.automed.reps.SchemaObject
 
setBackwardDegree(double) - Method in class uk.ac.ic.doc.automed.matching.BidirectionalDegree
 
setBaseType(String) - Method in class uk.ac.ic.doc.automed.wrappers.xsdomobject.ComplexType
Set whether or this is being used as a subtype
setBidirectionalDegrees(Hashtable, Hashtable) - Method in class uk.ac.ic.doc.automed.matching.modules.AbstractModule
Sets the bidirectional degrees of the module.
setCachePolicy(CachePolicy) - Method in class uk.ac.ic.doc.automed.qproc.eval.QueryEvaluationConfiguration
 
setCacheResultExpiredOK(boolean) - Method in class uk.ac.ic.doc.rodex.qproc.QualityIndicator
 
setCacheSource(IQueryCache) - Method in class uk.ac.ic.doc.automed.wrappers.QueryCacheWrapper
Passes a reference to the IQueryCache instance
setCacheStatus(boolean) - Method in class uk.ac.bbk.dcs.automed.qproc.evaluate.Evaluator
Deprecated. use QueryProcessorConfiguration.setCacheStatus instead
setCacheStatus(boolean) - Method in class uk.ac.bbk.dcs.automed.qproc.QueryProcessorConfiguration
 
setChildren(LinkedList) - Method in class uk.ac.bbk.dcs.automed.graph.TreeNode
Sets the children of the node.
setChildren(LinkedList) - Method in class uk.ac.bbk.dcs.automed.xml.xmldssGraph.XMLDSSGraphElement
 
setClassSubClassSwitch(boolean) - Method in class uk.ac.bbk.dcs.automed.xml.XMLRestructurer
 
setCloseSchemeBracket(String) - Static method in class uk.ac.ic.doc.automed.STR
Set the String that is used to close a scheme name, such as "<<person>>" or "<<person,name>>" By default it is set to ">>".
setCommandClass(Class) - Static method in class uk.ac.ic.doc.automed.DSR
 
setCommandHelp(String[][]) - Static method in class uk.ac.ic.doc.automed.DSR
 
setConfigFileName(String) - Static method in class uk.ac.ic.doc.automed.DSR
Sets the name of the file used for data source defintiions, this resets any data cached in the MDR or STR and invalidates all objects returned by them prior to this call.
setConfiguration(PathwayFinderConfiguration) - Method in class uk.ac.ic.doc.automed.reps.pathway.DefaultPathwayFinder
Set configuration settings
setConfiguration(PathwayFinderConfiguration) - Method in interface uk.ac.ic.doc.automed.reps.pathway.PathwayFinder
Set configuration settings
setConstraintDefinition(String, String) - Method in class uk.ac.ic.doc.automed.reps.Construct
Set the definition of a constraint used within this Construct.
setConstructClass(int, int) - Static method in class uk.ac.ic.doc.automed.MDR
 
setConstructClass(int) - Method in class uk.ac.ic.doc.automed.reps.Construct
Sets the class of the construct.
setConstructConstraint(int, String, String) - Static method in class uk.ac.ic.doc.automed.MDR
 
setConstructMID(int, int) - Static method in class uk.ac.ic.doc.automed.MDR
Changes the modelling language that a construct belongs to
setConstructName(String) - Method in class uk.ac.bbk.dcs.automed.qproc.iql.SchemeInfo
 
setConstructName(int, String) - Static method in class uk.ac.ic.doc.automed.MDR
 
setConstructProperty(int, int, String, Integer, String) - Static method in class uk.ac.ic.doc.automed.MDR
 
setConstructRoot(int, boolean) - Static method in class uk.ac.ic.doc.automed.MDR
 
setConstructSchemeArgCID(int, int, int) - Static method in class uk.ac.ic.doc.automed.MDR
 
setConstructSchemeHDMType(int, int, int) - Static method in class uk.ac.ic.doc.automed.MDR
 
setConstructSchemeKey(int, int, boolean) - Static method in class uk.ac.ic.doc.automed.MDR
 
setConstructSchemeLowerBound(int, int, int) - Static method in class uk.ac.ic.doc.automed.MDR
 
setConstructSchemeType(int, int, int) - Static method in class uk.ac.ic.doc.automed.MDR
 
setConstructSchemeUpperBound(int, int, int) - Static method in class uk.ac.ic.doc.automed.MDR
 
setConstructType(Construct) - Method in class uk.ac.ic.doc.automed.reps.SchemaObject
Sets the construct type of the schema object.
setContainmentQuery(String) - Method in class uk.ac.ic.doc.rodex.qproc.QueryRewriterResult
 
setData(Object) - Method in class uk.ac.bbk.dcs.automed.qproc.iql.Cell
Sets the Cell's data
setData(String[], Object[][]) - Method in class uk.ac.ic.doc.automed.util.cache.CacheContentDescription
Update the cache content description
setDataSource(boolean) - Method in class uk.ac.ic.doc.automed.reps.Schema
Deprecated. use {@link setType) instead. Sets whether or not the schema represents an external data source.
setDataSourceName(String) - Static method in class uk.ac.ic.doc.automed.MDR
Sets the name of the repository in the local database.
setDataSourceName(String) - Static method in class uk.ac.ic.doc.automed.SSMDR
Sets the name of the SemiStructured MetaData Repository in the local database.
setDataSourceName(String) - Static method in class uk.ac.ic.doc.automed.STR
Sets the name of the Schema Transformation Repository in the local database.
setDataToSend(String, int, byte[], boolean) - Method in class uk.ac.ic.doc.automed.p2p.communication.AbstractClient
Set the data to send (with acknowledgement specified).
setDatatype(String, String) - Method in class uk.ac.bbk.dcs.automed.hdmstore.HdmStore
The meta data for an HDM store is contained in the associated AutoMed schema except for the data type of the nodes in the schema which are set with this method (initially they default to String)
setDataType(int) - Method in class uk.ac.ic.doc.automed.matching.SchemaElement
Sets the data type of the schema element.
setDateTime(String) - Method in class uk.ac.bbk.dcs.automed.qproc.iql.Cell
 
setDBDriver(String) - Method in class uk.ac.ic.doc.automed.reps.AccessMethod
Sets the database driver used for connecting to the database.
setDebug(boolean) - Method in class uk.ac.bbk.dcs.automed.xml.xmldssGraph.XMLDSSRestructurer
 
setDebug(boolean) - Method in class uk.ac.ic.doc.automed.xml.XMLReader
 
setDebugLevel(int) - Static method in class uk.ac.ic.doc.automed.editor.XMLSchemaEditor
Set the debug level for this class.
setDebugLevel(int) - Static method in class uk.ac.ic.doc.automed.STR
Control the printing of debug information printed on the command line
setDebugLevel(int) - Static method in class uk.ac.ic.doc.automed.util.Debugger
Control the printing of debug information printed on the command line
setDebugLevel(int) - Static method in class uk.ac.ic.doc.automed.wrappers.AutoMedWrapper
Set the debug level for all AutoMed wrappers.
setDebugStream(PrintStream) - Method in class uk.ac.bbk.dcs.automed.qproc.annotate.grammars.schemes.SchemesTokenManager
 
setDebugStream(PrintStream) - Method in class uk.ac.bbk.dcs.automed.qproc.annotate.grammars.simpleComp.SimpleCompTokenManager
 
setDebugStream(PrintStream) - Method in class uk.ac.bbk.dcs.automed.qproc.annotate.grammars.simpleCompAppend.SimpleCompAppendTokenManager
 
setDebugStream(PrintStream) - Method in class uk.ac.bbk.dcs.automed.qproc.annotate.grammars.simpleCompAppendMonus.SimpleCompAppendMonusTokenManager
 
setDebugStream(PrintStream) - Method in class uk.ac.bbk.dcs.automed.qproc.translators.xquery.XQuery2IQLTokenManager
 
setDeepQuery(boolean) - Method in class uk.ac.bbk.dcs.automed.xml.wrappers.NXDBWrapper
 
setDefaultConfigFileName(String) - Static method in class uk.ac.ic.doc.automed.DSRConfiguration
Set the default configuration file name.
setDefaultConfigFileName(String[]) - Static method in class uk.ac.ic.doc.automed.DSRConfiguration
From command-line arguments, identify the -c flag which sets the configuration file name (if any)
setDefaultDataSource(String) - Static method in class uk.ac.ic.doc.automed.DSR
 
setDefaultEncoding(String) - Static method in class uk.ac.ic.doc.automed.xml.XMLWriter
 
setDefaultUserName(String) - Static method in class uk.ac.ic.doc.automed.DSR
 
setDescription(String) - Method in class uk.ac.ic.doc.automed.wrappers.XMLFileFilter
Sets the human readable description of this filter.
setDifference(Set, Set) - Static method in class uk.ac.ic.doc.automed.util.SetUtil
Returns a Set containing the result of set1 - set2.
setDisjointIDs(boolean) - Method in class uk.ac.bbk.dcs.automed.qproc.QueryProcessorConfiguration
 
setDocumentLocator(Locator) - Method in class uk.ac.ic.doc.automed.xml.XMLReader
 
setDTD(String) - Method in class uk.ac.ic.doc.automed.xml.XMLWriter
 
setElement2AttributeSwitch(boolean) - Method in class uk.ac.bbk.dcs.automed.xml.xmldssGraph.XMLDSSRestructurer
 
setElement2AttributeSwitch(boolean) - Method in class uk.ac.bbk.dcs.automed.xml.XMLRestructurer
 
setElements(Map) - Method in class uk.ac.ic.doc.automed.editor.EditorPanel
 
setEncoding(String) - Method in class uk.ac.ic.doc.automed.xml.XMLWriter
 
setEntryPoint(XMLDSSGraphElement) - Method in class uk.ac.bbk.dcs.automed.xml.xmldssGraph.XMLDSSGraph
 
setEvaluationState(int) - Method in class uk.ac.bbk.dcs.automed.qproc.iql.Cell
 
setEvaluator(String) - Method in class uk.ac.bbk.dcs.automed.qproc.QueryProcessorConfiguration
 
setException(String, Exception) - Method in class uk.ac.ic.doc.automed.editor.ReportException
 
setExistenceModule(AbstractModule) - Method in class uk.ac.ic.doc.automed.matching.DegreeCombinator
Sets the CheckExistenceModule of this DegreeCombinator
setExtDB(boolean) - Method in class uk.ac.ic.doc.automed.reps.Schema
Deprecated. use {@link setType) instead. Sets whether or not the schema represents an extentional database.
setExtensionListInDescription(boolean) - Method in class uk.ac.ic.doc.automed.wrappers.XMLFileFilter
Determines whether the extension list (.jpg, .gif, etc) should show up in the human readable description.
setExtSchema(boolean) - Method in class uk.ac.ic.doc.automed.reps.Schema
Deprecated. use {@link setType) instead. Sets whether or not the schema is an extentional schema.
setFeatures(int) - Method in class uk.ac.ic.doc.automed.wrappers.AutoMedWrapperFactory
Allows certain features of the Model used for Schemas generated by this wrapper factory.
setFeatures(int[]) - Method in class uk.ac.ic.doc.automed.wrappers.AutoMedWrapperFactory
Allows certain features of the Model used for Schemas generated by this wrapper factory.
setFeatures(int) - Method in class uk.ac.ic.doc.automed.wrappers.CSVWrapperFactory
Set the features for this instance of the factory
setFeatures(int) - Method in class uk.ac.ic.doc.automed.wrappers.SQLWrapperFactory
Allows certain features of the SQL92 data model to be represented in the AutoMed repository.
setFeatures(int) - Method in class uk.ac.ic.doc.automed.wrappers.UMLWrapperFactory
Set the features for this instance of the factory
setFeatures(int) - Method in class uk.ac.ic.doc.automed.wrappers.XMLSchemaWrapperFactory
Set the features for this instance of the factory
setField(int, Object) - Method in class uk.ac.ic.doc.automed.wrappers.AutoMedQuery
Return a field in the query node.
setFinalPosition() - Method in class uk.ac.ic.doc.automed.editor.autolayout.AutoLayout
 
setFinalPosition() - Method in class uk.ac.ic.doc.automed.editor.autolayout.AutoLayoutSchemaObject
Set position in Automed GUI.
setFinalPosition() - Method in class uk.ac.ic.doc.automed.editor.autolayout.AutoLayoutSpringObject
 
setFirstElement(SchemaElement) - Method in class uk.ac.ic.doc.automed.matching.SchemaElementPair
 
setFloat(float) - Method in class uk.ac.bbk.dcs.automed.qproc.iql.Cell
 
setFloat(double) - Method in class uk.ac.bbk.dcs.automed.qproc.iql.Cell
 
setForegroundColor(Color) - Method in interface uk.ac.ic.doc.automed.editor.Positionable
 
setForegroundColor(Color) - Method in class uk.ac.ic.doc.automed.reps.Construct
Set the default foreground colour to be used from drawing SchemaObjects of this Construct.
setForegroundColor(Color) - Method in class uk.ac.ic.doc.automed.reps.Model
Set the default foreground colour to be used from drawing SchemaObjects of this Model.
setForegroundColor(Color) - Method in class uk.ac.ic.doc.automed.reps.Network
 
setForegroundColor(Color) - Method in class uk.ac.ic.doc.automed.reps.Schema
 
setForegroundColor(Color) - Method in class uk.ac.ic.doc.automed.reps.SchemaObject
 
setFormulatedQuery(ASG) - Method in class uk.ac.ic.doc.rodex.qproc.QueryRewriteProcessor
Setter for formulated query (i.e.
setForwardDegree(double) - Method in class uk.ac.ic.doc.automed.matching.BidirectionalDegree
 
setFullPatterns() - Method in class uk.ac.ic.doc.automed.matching.SchemaElement
 
setGenerations(int) - Method in class uk.ac.ic.doc.automed.editor.layout.RootLayout
 
setGenericRoot(boolean) - Method in class uk.ac.bbk.dcs.automed.xml.materialisation.Materialiser
 
setGenericRoot(boolean) - Method in class uk.ac.bbk.dcs.automed.xml.materialisation.XMLDSSMaterialiser
 
setGlobal(boolean) - Method in class uk.ac.ic.doc.automed.p2p.tree.Reference
 
setGlobalName(String) - Method in class uk.ac.ic.doc.automed.reps.Schema
The original (global) name of a schema as advertised by a peer.
setGui(Gui) - Method in class uk.ac.ic.doc.automed.p2p.gui.PeerApplication
Set a GUI object
setHdmEquiv(int, int) - Static method in class uk.ac.ic.doc.automed.MDR
Update the hdmEquiv value for a given type
setHDMEquiv(TypeHierarchy, int) - Method in class uk.ac.ic.doc.automed.reps.TypeHierarchy.TypeObject
Set the type id of the HDM equivalent of this type
setHdmStore(HdmStore) - Method in class uk.ac.bbk.dcs.automed.hdmstore.HdmWrapper
Set the HdmStore that this wrapper will use
setHDMType(int) - Method in class uk.ac.ic.doc.automed.reps.ConstructScheme
Sets the HDM type of the ConstructScheme.
setIcon(String) - Method in class uk.ac.ic.doc.automed.wrappers.xsdomobject.XSDOMObject
 
setId(String) - Method in class uk.ac.ic.doc.automed.p2p.tree.TreeNode
 
setID(String) - Method in class uk.ac.ic.doc.rodex.qproc.QuerySubGoal
Set the id for this sub-goal using the corresponding schema object id from
the repository
setIDColumn(int) - Method in class uk.ac.ic.doc.automed.util.cache.CacheContentDescription
The table's ID column
setIndentSize(int) - Method in class uk.ac.ic.doc.automed.xml.XMLWriter
 
setIndex(int) - Method in class uk.ac.ic.doc.automed.util.cache.CacheItem
Set the temporary cache item index in the storage list for reference
setIndex(int) - Method in class uk.ac.ic.doc.rodex.qproc.QuerySubGoal
Set the temporary index position of this scheme in a list of schemes
.
setInstances(ArrayList) - Method in class uk.ac.ic.doc.automed.matching.SchemaElement
 
setInt(int) - Method in class uk.ac.bbk.dcs.automed.qproc.iql.Cell
 
setIntersection(Set, Set) - Static method in class uk.ac.ic.doc.automed.util.SetUtil
 
setIsDataEvolution(boolean) - Method in class uk.ac.bbk.dcs.automed.evolution1.Evolution
 
setIsRepair(boolean) - Method in class uk.ac.bbk.dcs.automed.evolution.schemaModelEvolution.SMEvolution
 
setIsRepair(boolean) - Method in class uk.ac.bbk.dcs.automed.evolution1.Evolution
 
setIsRepair(boolean) - Method in class uk.ac.bbk.dcs.automed.evolution2.schemaEvolution.SchemaEvolution
 
setIsSchemaEvolution(boolean) - Method in class uk.ac.bbk.dcs.automed.evolution1.Evolution
 
setKey(boolean) - Method in class uk.ac.ic.doc.automed.reps.ConstructScheme
Sets whether or not the current scheme position is part the key of the whole scheme.
setKeyRef(String) - Method in class uk.ac.ic.doc.automed.wrappers.xsdomobject.XSDOMObject
 
setLabel(String) - Method in interface uk.ac.ic.doc.automed.editor.Positionable
 
setLabel(String) - Method in class uk.ac.ic.doc.automed.reps.Construct
 
setLabel(String) - Method in class uk.ac.ic.doc.automed.reps.Model
 
setLabel(String) - Method in class uk.ac.ic.doc.automed.reps.Network
 
setLabel(String) - Method in class uk.ac.ic.doc.automed.reps.Schema
 
setLabel(String) - Method in class uk.ac.ic.doc.automed.reps.SchemaObject
 
setLabelPosition(int, int) - Method in interface uk.ac.ic.doc.automed.editor.Positionable
 
setLabelPosition(int, int) - Method in class uk.ac.ic.doc.automed.reps.Construct
 
setLabelPosition(int, int) - Method in class uk.ac.ic.doc.automed.reps.Model
 
setLabelPosition(int, int) - Method in class uk.ac.ic.doc.automed.reps.Network
 
setLabelPosition(int, int) - Method in class uk.ac.ic.doc.automed.reps.Schema
 
setLabelPosition(int, int) - Method in class uk.ac.ic.doc.automed.reps.SchemaObject
 
setLabelXPos(int) - Method in interface uk.ac.ic.doc.automed.editor.Positionable
 
setLabelXPos(int) - Method in class uk.ac.ic.doc.automed.reps.Construct
 
setLabelXPos(int) - Method in class uk.ac.ic.doc.automed.reps.Model
 
setLabelXPos(int) - Method in class uk.ac.ic.doc.automed.reps.Network
 
setLabelXPos(int) - Method in class uk.ac.ic.doc.automed.reps.Schema
 
setLabelXPos(int) - Method in class uk.ac.ic.doc.automed.reps.SchemaObject
 
setLabelYPos(int) - Method in interface uk.ac.ic.doc.automed.editor.Positionable
 
setLabelYPos(int) - Method in class uk.ac.ic.doc.automed.reps.Construct
 
setLabelYPos(int) - Method in class uk.ac.ic.doc.automed.reps.Model
 
setLabelYPos(int) - Method in class uk.ac.ic.doc.automed.reps.Network
 
setLabelYPos(int) - Method in class uk.ac.ic.doc.automed.reps.Schema
 
setLabelYPos(int) - Method in class uk.ac.ic.doc.automed.reps.SchemaObject
 
setLastUpdate(String) - Method in class uk.ac.ic.doc.automed.p2p.directory.PeerDescription
 
setLower(int) - Method in class uk.ac.ic.doc.automed.reps.ConstructScheme
Sets the lower bound indicating the minimum occurence of the ConstructScheme.
setMaxOccurs(boolean) - Method in class uk.ac.ic.doc.automed.wrappers.xsdomobject.XSDOMObject
 
setMDR_DataSourceName(String) - Static method in class uk.ac.ic.doc.automed.MDR
Deprecated. use setDataSourceName() instead
setMinOccurs(int) - Method in class uk.ac.ic.doc.automed.wrappers.xsdomobject.XSDOMObject
 
setModelBaseName(String) - Method in class uk.ac.ic.doc.automed.wrappers.AutoMedWrapperFactory
Each implementing class gives a name for the Models that will be generated for Schemas.
setModelName(String) - Method in class uk.ac.bbk.dcs.automed.qproc.iql.SchemeInfo
 
setModelName(int, String) - Static method in class uk.ac.ic.doc.automed.MDR
 
setName(String) - Method in class uk.ac.bbk.dcs.automed.graph.TreeNode
 
setName(String) - Method in class uk.ac.bbk.dcs.automed.xml.xmldssGraph.XMLDSSGraphAttribute
 
setName(String) - Method in class uk.ac.ic.doc.automed.matching.SchemaElement
Sets the name of the schema element.
setName(String) - Method in class uk.ac.ic.doc.automed.p2p.AutoMedPeer
Set a new name for peer
setName(String) - Method in class uk.ac.ic.doc.automed.reps.Construct
Sets the name of the construct to the given string.
setName(String) - Method in class uk.ac.ic.doc.automed.reps.Model
Sets the model's name.
setName(String) - Method in class uk.ac.ic.doc.automed.reps.Protocol
Sets the name of the protocol to the given string.
setName(String) - Method in class uk.ac.ic.doc.automed.reps.Schema
Set the name of a Schema.
setName(String) - Method in class uk.ac.ic.doc.automed.wrappers.xsdomobject.XSDOMObject
Set the name for this object
setName(String) - Method in class uk.ac.ic.doc.rodex.p2p.messages.applicationlayer.HelloMsg
 
setNamespaceAware(boolean) - Method in class uk.ac.ic.doc.automed.xml.XMLReader
 
setNodeLabels(Map) - Method in class uk.ac.ic.doc.automed.matching.modules.bidirectionalmap.MapDisplay
This method is called from within the constructor to initialize the form.
setNodeName(String) - Method in class uk.ac.bbk.dcs.automed.xml.xmldssGraph.XMLDSSGraphElement
 
setNonAtomicPairRelationships(SchemaElementPairRelationship[]) - Method in class uk.ac.ic.doc.automed.matching.RelationshipExtractor
Sets the relationships of pairs of non-atomic schema elements.
setNumberInstancesModule(AbstractModule) - Method in class uk.ac.ic.doc.automed.matching.DegreeCombinator
Sets the number of instances module of this DegreeCombinator
setOffset(int, int) - Method in class uk.ac.ic.doc.automed.editor.layout.RootLayout
 
setOpenCloseSchemeBracket(String, String) - Static method in class uk.ac.ic.doc.automed.reps.Schema
Set the Strings that is used to open and close a scheme name, such as the "<<" and ">>" in "<<person>>" or "<<person,name>>".
setOpenSchemeBracket(String) - Static method in class uk.ac.ic.doc.automed.STR
Set the String that is used to open a scheme name, such as "<<person>>" or "<<person,name>>".
setOptimisationAnnotation(int) - Method in class uk.ac.bbk.dcs.automed.qproc.iql.Cell
 
setOptimisationState(boolean) - Method in class uk.ac.bbk.dcs.automed.qproc.QueryProcessorConfiguration
Set the optimisation state
setOptimisedQuery(ASG) - Method in class uk.ac.ic.doc.rodex.qproc.QueryRewriteProcessor
Store result of query optimisation
setOptimiser(String) - Method in class uk.ac.bbk.dcs.automed.qproc.QueryProcessorConfiguration
 
setOption(String, String) - Method in class uk.ac.ic.doc.automed.wrappers.AutoMedWrapper
Make an option setting.
setOutputHandler(LogOutputHandler) - Static method in class uk.ac.ic.doc.automed.util.Logger
Change default log handler
setOwner(XMLDSSGraphElement) - Method in class uk.ac.bbk.dcs.automed.xml.xmldssGraph.XMLDSSGraphAttribute
 
setOwnerGraph(XMLDSSGraph) - Method in class uk.ac.bbk.dcs.automed.xml.xmldssGraph.XMLDSSGraphElement
 
setParent(TreeNode) - Method in class uk.ac.bbk.dcs.automed.graph.TreeNode
Sets the parent node.
setParent(XMLDSSGraphElement) - Method in class uk.ac.bbk.dcs.automed.xml.xmldssGraph.XMLDSSGraphElement
 
setParent(XMLDSSGraphElement) - Method in class uk.ac.bbk.dcs.automed.xml.xmldssGraph.XMLDSSGraphText
 
setParent(TreeNode) - Method in class uk.ac.ic.doc.automed.p2p.tree.TreeNode
 
setParent(String) - Method in class uk.ac.ic.doc.automed.wrappers.xsdomobject.XSDOMObject
Set the parent for this object
setPassword(String) - Method in class uk.ac.ic.doc.automed.reps.AccessMethod
Sets the password used for connecting to the database.
setPatterns() - Method in class uk.ac.ic.doc.automed.matching.SchemaElement
 
setPatternToSchemaObject(SSDPattern, SchemaObject, int) - Method in class uk.ac.ic.doc.automed.ssd.SSDFormat
 
setPatternValue(int, String) - Static method in class uk.ac.ic.doc.automed.SSMDR
Sets the value of the pattern.
setPeerAddress(InetAddress) - Method in class uk.ac.ic.doc.automed.p2p.AutoMedPeer
 
setPeerName(String) - Method in class uk.ac.bbk.dcs.automed.qproc.iql.SchemeInfo
 
setPeerState(int) - Method in class uk.ac.ic.doc.automed.p2p.AutoMedPeer
Return reference to PeerStateHandler object
setPersistentHandler(PersistentHandler) - Method in class uk.ac.ic.doc.automed.qproc.cache.DefaultQueryCache
 
setPersistentHandler(PersistentHandler) - Method in interface uk.ac.ic.doc.automed.util.persist.Persistence
Implement this method for serialising cache content
setPort(int) - Method in class uk.ac.ic.doc.rodex.p2p.messages.applicationlayer.HelloMsg
 
setPosition(int, int) - Method in class uk.ac.ic.doc.automed.editor.autolayout.AutoLayout
 
setPosition(int, int) - Method in class uk.ac.ic.doc.automed.editor.autolayout.AutoLayoutPositionable
 
setPosition(int, int) - Method in interface uk.ac.ic.doc.automed.editor.Positionable
 
setPosition(int, int) - Method in class uk.ac.ic.doc.automed.reps.Construct
 
setPosition(int, int) - Method in class uk.ac.ic.doc.automed.reps.Model
 
setPosition(int, int) - Method in class uk.ac.ic.doc.automed.reps.Network
 
setPosition(int, int) - Method in class uk.ac.ic.doc.automed.reps.Schema
 
setPosition(int, int) - Method in class uk.ac.ic.doc.automed.reps.SchemaObject
 
setPrecisionModule(AbstractModule) - Method in class uk.ac.ic.doc.automed.matching.DegreeCombinator
Sets the PrecisionModule of this DegreeCombinator
setPrettifyAttributes(boolean) - Method in class uk.ac.ic.doc.automed.xml.XMLWriter
 
setPrimaryKey(XSDOMObject) - Method in class uk.ac.ic.doc.automed.wrappers.xsdomobject.ComplexType
Set the primary key for this complexType
setPrimaryKey(XSDOMObject) - Method in class uk.ac.ic.doc.automed.wrappers.xsdomobject.Element
Set the primary key for this Element
setPrintStream(PrintStream) - Method in class uk.ac.bbk.dcs.automed.xml.xmldssGraph.XMLDSSRestructurer
 
setProperty(String, String) - Method in class uk.ac.ic.doc.automed.reps.AccessMethod
Sets a property associated with this AccessMethod.
setProperty(String, String) - Method in class uk.ac.ic.doc.automed.reps.Transformation
Sets a property associated with this Transformation.
setProtocol(Protocol) - Method in class uk.ac.ic.doc.automed.reps.AccessMethod
Sets the protocol used for connecting to the database.
setProtocolName(int, String) - Static method in class uk.ac.ic.doc.automed.STR
Sets the name of the protocol specified by the given protocol identifier (PID).
setPublicName(String) - Method in class uk.ac.ic.doc.automed.xml.XMLWriter
 
setPublicSchemas(List) - Method in class uk.ac.ic.doc.automed.p2p.PeerCache
Assign a list of public schemas (i.e.
setQuality(int) - Method in class uk.ac.ic.doc.automed.reps.pathway.PathwayFinderConfiguration
 
setQualityIndicator(QualityIndicator) - Method in class uk.ac.bbk.dcs.automed.qproc.QueryProcessorConfiguration
 
setQuery(String) - Method in class uk.ac.ic.doc.automed.matching.SchemaElement
 
setQuery(String) - Method in class uk.ac.ic.doc.rodex.qproc.QueryDescription
 
setQueryASG(ASG) - Method in class uk.ac.ic.doc.rodex.qproc.QueryDescription
 
setQueryDescription(QueryDescription) - Method in class uk.ac.ic.doc.automed.qproc.ASGQuery
 
setQueryEvaluationConfig(QueryEvaluationConfiguration) - Method in class uk.ac.bbk.dcs.automed.qproc.QueryProcessorConfiguration
 
setQueryID(String) - Method in class uk.ac.ic.doc.automed.qproc.ASGQuery
 
setQueryLanguage(int) - Method in class uk.ac.bbk.dcs.automed.qproc.QueryProcessorConfiguration
Return the query language
setQueryVariables(String) - Method in class uk.ac.ic.doc.automed.matching.SchemaElement
 
setQueueWorker(QueueWorker) - Method in class uk.ac.ic.doc.automed.util.queue.Queue
Register the QueueWorker object to update queue
setRangeSemantics(int) - Method in class uk.ac.bbk.dcs.automed.qproc.QueryProcessorConfiguration
Set range semantics, i.e.
setReadyState(boolean) - Method in class uk.ac.ic.doc.automed.p2p.communication.AbstractClient
 
setReadyState(boolean) - Method in class uk.ac.ic.doc.automed.p2p.communication.AbstractServer
 
setRealObject(PersistentObject) - Method in class uk.ac.ic.doc.automed.p2p.tree.AutoMedObject
 
setRealObject(PersistentObject) - Method in class uk.ac.ic.doc.automed.p2p.tree.Reference
 
setReformulationSemantics(int) - Method in class uk.ac.bbk.dcs.automed.qproc.QueryProcessorConfiguration
 
setReformulator(String) - Method in class uk.ac.bbk.dcs.automed.qproc.QueryProcessorConfiguration
 
setRelationship(SemanticRelationship) - Method in class uk.ac.ic.doc.automed.matching.SchemaElementPairRelationship
Sets the semantic relationship between the first and the second element in the pair.
setRelationships(SchemaElementPairRelationship[]) - Method in class uk.ac.ic.doc.automed.matching.Integrator
Sets the discovered relationships between the schema elements.
setRemainderQuery(String) - Method in class uk.ac.ic.doc.rodex.qproc.QueryRewriterResult
 
setResultObjects(List) - Method in class uk.ac.ic.doc.rodex.qproc.QueryRewriterResult
A List of ASG result objects
setResultString(String) - Method in class uk.ac.ic.doc.rodex.qproc.QueryRewriterResult
Set the IQL tuple result string
setRoot(boolean) - Method in class uk.ac.ic.doc.automed.reps.Construct
Sets whether or not the construct is a construct type of its underlying data model.
setRoot(Element) - Method in class uk.ac.ic.doc.automed.wrappers.xsdomobject.Document
Return the root element of this document
setRootNode(SchemaObject[]) - Method in class uk.ac.ic.doc.automed.editor.layout.RootLayout
 
setSchema(String) - Method in class uk.ac.bbk.dcs.automed.hdmstore.HdmWrapper
Set the value of the schema that this wrapper is for
setSchema(Schema) - Method in class uk.ac.ic.doc.automed.editor.XMLSchemaEditor
Set the value of the Automed schema for this object
setSchema(Schema) - Method in class uk.ac.ic.doc.automed.reps.AccessMethod
Sets the schema that represents the database to which the access method connects.
setSchema(Schema) - Method in class uk.ac.ic.doc.automed.reps.HDMToHighLevel
Set the schema to transform
setSchema(Schema) - Method in class uk.ac.ic.doc.automed.reps.HDMTransformations
Set the schema for this object
setSchema(Schema) - Method in class uk.ac.ic.doc.automed.ssd.SSDFormat
 
setSchema(int, int) - Static method in class uk.ac.ic.doc.automed.SSMDR
Sets the SID for the ssd format.
setSchema(String) - Method in class uk.ac.ic.doc.automed.wrappers.HDMWrapper
Set the value of the schema that this wrapper is for
setSchema(Schema) - Method in class uk.ac.ic.doc.automed.xmlschema.tree.TreeDropTarget
Set the current schema
setSchemaBackgroundColor(int, int) - Static method in class uk.ac.ic.doc.automed.STR
 
setSchemaForegroundColor(int, int) - Static method in class uk.ac.ic.doc.automed.STR
 
setSchemaLabelPos(int, int, int) - Static method in class uk.ac.ic.doc.automed.STR
 
setSchemaName(String) - Method in class uk.ac.bbk.dcs.automed.qproc.iql.SchemeInfo
 
setSchemaName(int, String) - Static method in class uk.ac.ic.doc.automed.STR
Sets the name of schema.
setSchemaName(String) - Method in class uk.ac.ic.doc.rodex.qproc.QueryAnalyser
Set the schema name
setSchemaName(String) - Method in class uk.ac.ic.doc.rodex.qproc.QueryDescription
 
setSchemaObject(SchemaObject) - Method in class uk.ac.bbk.dcs.automed.qproc.iql.SchemeInfo
 
setSchemaObject(SchemaObject) - Method in class uk.ac.ic.doc.automed.wrappers.xsdomobject.XSDOMObject
Set the schema object for this object
setSchemaObjectBackgroundColor(int, int) - Static method in class uk.ac.ic.doc.automed.STR
 
setSchemaObjectCID(int, int) - Static method in class uk.ac.ic.doc.automed.STR
Sets the construct identifier (CID) of the schema object.
setSchemaObjectForegroundColor(int, int) - Static method in class uk.ac.ic.doc.automed.STR
 
setSchemaObjectID(int) - Method in class uk.ac.bbk.dcs.automed.qproc.iql.SchemeInfo
 
setSchemaObjectLabelPos(int, int, int) - Static method in class uk.ac.ic.doc.automed.STR
 
setSchemaObjectPos(int, int, int) - Static method in class uk.ac.ic.doc.automed.STR
 
setSchemaObjectSID(int, int) - Static method in class uk.ac.ic.doc.automed.STR
Sets the schema identifier (SID) to which a particular schema object belongs.
setSchemaObjectTextColor(int, int) - Static method in class uk.ac.ic.doc.automed.STR
 
setSchemaObjectType(int) - Method in class uk.ac.ic.doc.automed.reps.SchemaObject
Set type_id for schema object
setSchemaObjectType(int, int) - Static method in class uk.ac.ic.doc.automed.STR
Save type id for schema object
setSchemaObjectValue(int, String) - Static method in class uk.ac.ic.doc.automed.STR
Sets the name/value of the schema object.
setSchemaPos(int, int, int) - Static method in class uk.ac.ic.doc.automed.STR
 
setSchemas(Schema[]) - Method in class uk.ac.ic.doc.automed.matching.Integrator
 
setSchemas(Schema[]) - Method in class uk.ac.ic.doc.automed.matching.RelationshipExtractor
 
setSchemas(Schema[]) - Method in class uk.ac.ic.doc.automed.matching.SQLIntegrator
Sets the schemas that are going to be integrated.
setSchemas(Schema[]) - Method in class uk.ac.ic.doc.automed.matching.SQLRelationshipExtractor
Sets the schemas that are being matched.
setSchemaSubnetSID(int, int) - Static method in class uk.ac.ic.doc.automed.STR
Sets the subnet SID of a schema.
setSchemaTextColor(int, int) - Static method in class uk.ac.ic.doc.automed.STR
 
setSchemaType(int, int) - Static method in class uk.ac.ic.doc.automed.STR
Sets the type of a schema.
setSchemeSOBID(int, int, int) - Static method in class uk.ac.ic.doc.automed.STR
Sets the referenced schema object in a specific position of the scheme of a schema object.
setSchemeString(String) - Method in class uk.ac.bbk.dcs.automed.qproc.iql.SchemeInfo
 
setSchemeType(int) - Method in class uk.ac.ic.doc.automed.reps.ConstructScheme
Sets the scheme type of the ConstructScheme.
setSecondElement(SchemaElement) - Method in class uk.ac.ic.doc.automed.matching.SchemaElementPair
 
setSectionDebugLevel(int, int) - Static method in class uk.ac.ic.doc.automed.STR
Set the level of debug info output to the console for a numbered section of code.
setSectionDebugLevel(int, int) - Static method in class uk.ac.ic.doc.automed.util.Debugger
Set the level of debug info output to the console for a numbered section of code.
setSectionDebugLevel(String[]) - Static method in class uk.ac.ic.doc.automed.util.Debugger
From command-line arguments, find debug flag and set debug settings accordingly
setSeparateErrors(boolean) - Method in class uk.ac.ic.doc.automed.xml.XMLReader
 
setServerAddress(String, String) - Method in class uk.ac.ic.doc.automed.p2p.AppToolKit.NodeConfig
 
setServerPort(String, String) - Method in class uk.ac.ic.doc.automed.p2p.AppToolKit.NodeConfig
 
setSimilarityDegree(double) - Method in class uk.ac.ic.doc.automed.matching.modules.bidirectionalmap.SimilarCluster
 
setSkolemOn(boolean) - Method in class uk.ac.bbk.dcs.automed.xml.xmldssGraph.XMLDSSRestructurer
 
setSkolemOn(boolean) - Method in class uk.ac.bbk.dcs.automed.xml.XMLRestructurer
 
setSmartQuoting(boolean) - Static method in class uk.ac.ic.doc.automed.reps.Syntax
 
setSSDFormatName(int, String) - Static method in class uk.ac.ic.doc.automed.SSMDR
Sets the name of ssd format.
setSSDPattern(SSDPattern) - Method in class uk.ac.ic.doc.automed.ssd.SSDFormat
 
setSSMDR_DataSourceName(String) - Static method in class uk.ac.ic.doc.automed.SSMDR
Deprecated. use setDataSourceName()
setStandAlone(boolean) - Method in class uk.ac.ic.doc.automed.editor.Gui
Set stand-aloen
setStatus(String) - Method in class uk.ac.ic.doc.automed.p2p.directory.PeerDescription
 
setSTR_DataSourceName(String) - Static method in class uk.ac.ic.doc.automed.STR
Deprecated. use setDataSourceName()
setSubGoal(int, QuerySubGoal) - Method in class uk.ac.ic.doc.rodex.qproc.QueryAnalyser
Push a sub-goal object in a pariticular position in the sub goal list
setSubTitle(String) - Method in class uk.ac.ic.doc.automed.editor.Gui.EditorFrame
 
setSupressedTokenTypes(int[]) - Method in class uk.ac.ic.doc.automed.xml.XMLReader
 
setSupressIgnorableWhitespace(boolean) - Method in class uk.ac.ic.doc.automed.xml.XMLReader
 
setSyntaxChecking(boolean) - Method in class uk.ac.ic.doc.automed.reps.Transformation
Set if the syntax of transformations is checked as entered into the repository.
setSyntheticSwitch(boolean) - Method in class uk.ac.bbk.dcs.automed.xml.xmldssGraph.XMLDSSRestructurer
 
setSyntheticSwitch(boolean) - Method in class uk.ac.bbk.dcs.automed.xml.XMLRestructurer
 
setTag(int) - Method in class uk.ac.bbk.dcs.automed.qproc.iql.Cell
 
setText(String) - Method in class uk.ac.ic.doc.automed.editor.DrawVertex
Set the text that will be used in this {link @Drawable}, and record its width and height.
setTextColor(Color) - Method in interface uk.ac.ic.doc.automed.editor.Positionable
 
setTextColor(Color) - Method in class uk.ac.ic.doc.automed.reps.Construct
Set the default text colour to be used from drawing SchemaObjects of this Construct.
setTextColor(Color) - Method in class uk.ac.ic.doc.automed.reps.Model
Set the default text colour to be used from drawing SchemaObjects of this Model.
setTextColor(Color) - Method in class uk.ac.ic.doc.automed.reps.Network
 
setTextColor(Color) - Method in class uk.ac.ic.doc.automed.reps.Schema
 
setTextColor(Color) - Method in class uk.ac.ic.doc.automed.reps.SchemaObject
 
setThrowErrors(boolean) - Method in class uk.ac.ic.doc.automed.xml.XMLReader
 
setTitle(String) - Method in class uk.ac.ic.doc.automed.editor.Gui.EditorFrame
 
setTitle(String) - Method in class uk.ac.ic.doc.automed.p2p.gui.TablePanel
 
setTitleAndObjects() - Method in class uk.ac.ic.doc.automed.p2p.gui.MainFrame
 
setTotalColumns(int) - Method in class uk.ac.ic.doc.automed.xml.XMLWriter
 
setTranAction(int, int, String) - Static method in class uk.ac.ic.doc.automed.STR
Sets the action of a transformation between two schemas.
setTranConstraint(int, int, String) - Static method in class uk.ac.ic.doc.automed.STR
Sets the constraint of a transformation between two schemas.
setTranFromObject(int, int, int) - Static method in class uk.ac.ic.doc.automed.STR
Sets the object identifier (OBID) of the schema object to be transformed in a transformation
setTranFunction(int, int, String) - Static method in class uk.ac.ic.doc.automed.STR
Sets the function of a transformation between two schemas.
setTransformationProperty(int, int, String, String) - Static method in class uk.ac.ic.doc.automed.STR
 
setTranToObject(int, int, int) - Static method in class uk.ac.ic.doc.automed.STR
Sets the object identifier (OBID) of the schema object as a result of a transformation.
setType(String) - Method in class uk.ac.bbk.dcs.automed.qproc.iql.SchemeInfo
 
setType(String) - Method in class uk.ac.bbk.dcs.automed.xml.xmldssGraph.XMLDSSGraphAttribute
 
setType(int) - Method in class uk.ac.ic.doc.automed.reps.Schema
Set what type of Schema this is.
setType(String) - Method in class uk.ac.ic.doc.automed.wrappers.xsdomobject.XSDOMObject
Set the type for this object
setTypeCheckingState(boolean) - Method in class uk.ac.bbk.dcs.automed.qproc.QueryProcessorConfiguration
Set the optimisation state
setTypeId(int) - Method in class uk.ac.ic.doc.automed.reps.TypeHierarchy.TypeObject
Set the type id of this object
setUnion(Set, Set) - Static method in class uk.ac.ic.doc.automed.util.SetUtil
 
setUpper(int) - Method in class uk.ac.ic.doc.automed.reps.ConstructScheme
Sets the upper bound indicating the maximum occurence of the ConstructScheme.
setURL(String) - Method in class uk.ac.ic.doc.automed.p2p.directory.PeerDescription
 
setURL(String) - Method in class uk.ac.ic.doc.automed.reps.AccessMethod
Sets the URL of the database to which the access method connects.
setUsername(String) - Method in class uk.ac.ic.doc.automed.reps.AccessMethod
Sets the username used for connecting to the database.
setUseSplitCDATA(boolean) - Method in class uk.ac.ic.doc.automed.xml.XMLWriter
 
setUSRs(UncertainSchemaElementPair[]) - Method in class uk.ac.ic.doc.automed.matching.modules.AbstractModule
 
SetUtil - Class in uk.ac.ic.doc.automed.util
 
SetUtil() - Constructor for class uk.ac.ic.doc.automed.util.SetUtil
 
setValidating(boolean) - Method in class uk.ac.ic.doc.automed.xml.XMLReader
 
setValue(String) - Method in class uk.ac.ic.doc.automed.reps.SchemaObject
Sets the name/value of the schema object.
setVertexDrawable(String) - Method in class uk.ac.ic.doc.automed.reps.Construct
Sets the name of the class used to draw the vertex of this Construct in any diagram containing it.
setVisible(boolean) - Method in class uk.ac.ic.doc.automed.p2p.gui.InputDialog
 
setWrapper(String) - Method in class uk.ac.ic.doc.automed.reps.AccessMethod
Sets the wrapper asscociated with this.
setXMLDSSExtractionMethod(int) - Method in class uk.ac.bbk.dcs.automed.xml.wrappers.XMLWrapperFactory
 
setXMLDSSSchema(Schema) - Method in class uk.ac.bbk.dcs.automed.xml.relational.XMLDSSFromRDB
 
setXMLVersion(String) - Method in class uk.ac.ic.doc.automed.xml.XMLWriter
 
setXPos(int) - Method in interface uk.ac.ic.doc.automed.editor.Positionable
 
setXPos(int) - Method in class uk.ac.ic.doc.automed.reps.Construct
 
setXPos(int) - Method in class uk.ac.ic.doc.automed.reps.Model
 
setXPos(int) - Method in class uk.ac.ic.doc.automed.reps.Network
 
setXPos(int) - Method in class uk.ac.ic.doc.automed.reps.Schema
 
setXPos(int) - Method in class uk.ac.ic.doc.automed.reps.SchemaObject
 
setYourAddress(String) - Method in class uk.ac.ic.doc.rodex.p2p.messages.applicationlayer.HelloMsg
Set the actual peer's address after hello message was received
setYPos(int) - Method in interface uk.ac.ic.doc.automed.editor.Positionable
 
setYPos(int) - Method in class uk.ac.ic.doc.automed.reps.Construct
 
setYPos(int) - Method in class uk.ac.ic.doc.automed.reps.Model
 
setYPos(int) - Method in class uk.ac.ic.doc.automed.reps.Network
 
setYPos(int) - Method in class uk.ac.ic.doc.automed.reps.Schema
 
setYPos(int) - Method in class uk.ac.ic.doc.automed.reps.SchemaObject
 
showAllSchemas() - Method in class uk.ac.ic.doc.automed.p2p.gui.PeerApplication
 
showCacheViewer() - Method in class uk.ac.ic.doc.rodex.p2p.gui.GuiApplication
Show cache viewer frame
showExtent(Gui, Object[]) - Static method in class uk.ac.ic.doc.automed.editor.Gui
Displays the extent of a schema object
showInstanceCache() - Static method in class uk.ac.bbk.dcs.automed.qproc.reformulate.AtomicViewMap
 
showInstanceCache() - Static method in class uk.ac.bbk.dcs.automed.qproc.reformulate.CompositeViewMap
 
showPathway() - Static method in class uk.ac.bbk.dcs.automed.evolution.EvolutionUtility
 
showPathway() - Static method in class uk.ac.bbk.dcs.automed.evolution2.EvolutionUtility
 
showPathways(String, String) - Static method in class uk.ac.bbk.dcs.automed.evolution.EvolutionUtility
 
showPathways(Schema, Schema) - Static method in class uk.ac.bbk.dcs.automed.evolution.EvolutionUtility
 
showPathways(String, String) - Static method in class uk.ac.bbk.dcs.automed.evolution2.EvolutionUtility
 
showPathways(Schema, Schema) - Static method in class uk.ac.bbk.dcs.automed.evolution2.EvolutionUtility
 
showPerformance() - Method in class uk.ac.bbk.dcs.automed.qproc.OldQueryProcessor
 
showPerformance(QueryProcessorConfiguration) - Method in class uk.ac.bbk.dcs.automed.qproc.QueryProcessor
 
showPerformance(QueryProcessorConfiguration) - Method in class uk.ac.bbk.dcs.automed.qproc.TempQueryProcessor
 
showPoint(Point) - Static method in class uk.ac.ic.doc.automed.editor.autolayout.AutoLayout
 
showSchema(SchemaDescription) - Method in class uk.ac.ic.doc.automed.p2p.gui.PeerApplication
 
showStep() - Method in class uk.ac.bbk.dcs.automed.dataWarehousing.dlt.TransfStep
 
showTree() - Method in class uk.ac.ic.doc.automed.editor.autolayout.AutoLayoutTreeObject
Same as setFinalPosition() but set position on all object in tree.
showViewMap() - Method in class uk.ac.bbk.dcs.automed.qproc.reformulate.AtomicViewMap
 
showViewMap() - Method in class uk.ac.bbk.dcs.automed.qproc.reformulate.CompositeViewMap
 
shutdown() - Method in class uk.ac.ic.doc.automed.util.db.DBAccess
Shutdown in-process database, closes current connection to it
shutdown() - Method in class uk.ac.ic.doc.automed.util.db.DBEmbedded
Shutdown in-process database, closes current connection to it and remove DBEmbedded object from the cache of data sources
SICP - Class in uk.ac.ic.doc.rodex.p2p.protocol
SICP.java

Schema Information Control Protocol: provides standard interface functions for publishing/obtaining information regarding resources on the P2P network.
SimilarCluster - Class in uk.ac.ic.doc.automed.matching.modules.bidirectionalmap
 
SimilarCluster(Cluster, double) - Constructor for class uk.ac.ic.doc.automed.matching.modules.bidirectionalmap.SimilarCluster
 
SimilarSchemaElementPair - Class in uk.ac.ic.doc.automed.matching
The class representing a pair of schema elements and its bidirectional similarity degrees.
SimilarSchemaElementPair(SchemaElement, SchemaElement, BidirectionalDegree) - Constructor for class uk.ac.ic.doc.automed.matching.SimilarSchemaElementPair
Constructs a SimilarSchemaElementPair object.
SimilarSchemaElementPair(SchemaElementPair, BidirectionalDegree) - Constructor for class uk.ac.ic.doc.automed.matching.SimilarSchemaElementPair
Constructs a SimilarSchemaElementPair object.
SimpleCharStream - Class in uk.ac.bbk.dcs.automed.qproc.annotate.grammars.schemes
An implementation of interface CharStream, where the stream is assumed to contain only ASCII characters (without unicode processing).
SimpleCharStream(Reader, int, int, int) - Constructor for class uk.ac.bbk.dcs.automed.qproc.annotate.grammars.schemes.SimpleCharStream
 
SimpleCharStream(Reader, int, int) - Constructor for class uk.ac.bbk.dcs.automed.qproc.annotate.grammars.schemes.SimpleCharStream
 
SimpleCharStream(Reader) - Constructor for class uk.ac.bbk.dcs.automed.qproc.annotate.grammars.schemes.SimpleCharStream
 
SimpleCharStream(InputStream, int, int, int) - Constructor for class uk.ac.bbk.dcs.automed.qproc.annotate.grammars.schemes.SimpleCharStream
 
SimpleCharStream(InputStream, int, int) - Constructor for class uk.ac.bbk.dcs.automed.qproc.annotate.grammars.schemes.SimpleCharStream
 
SimpleCharStream(InputStream) - Constructor for class uk.ac.bbk.dcs.automed.qproc.annotate.grammars.schemes.SimpleCharStream
 
SimpleCharStream - Class in uk.ac.bbk.dcs.automed.qproc.annotate.grammars.simpleComp
An implementation of interface CharStream, where the stream is assumed to contain only ASCII characters (without unicode processing).
SimpleCharStream(Reader, int, int, int) - Constructor for class uk.ac.bbk.dcs.automed.qproc.annotate.grammars.simpleComp.SimpleCharStream
 
SimpleCharStream(Reader, int, int) - Constructor for class uk.ac.bbk.dcs.automed.qproc.annotate.grammars.simpleComp.SimpleCharStream
 
SimpleCharStream(Reader) - Constructor for class uk.ac.bbk.dcs.automed.qproc.annotate.grammars.simpleComp.SimpleCharStream
 
SimpleCharStream(InputStream, int, int, int) - Constructor for class uk.ac.bbk.dcs.automed.qproc.annotate.grammars.simpleComp.SimpleCharStream
 
SimpleCharStream(InputStream, int, int) - Constructor for class uk.ac.bbk.dcs.automed.qproc.annotate.grammars.simpleComp.SimpleCharStream
 
SimpleCharStream(InputStream) - Constructor for class uk.ac.bbk.dcs.automed.qproc.annotate.grammars.simpleComp.SimpleCharStream
 
SimpleCharStream - Class in uk.ac.bbk.dcs.automed.qproc.annotate.grammars.simpleCompAppend
An implementation of interface CharStream, where the stream is assumed to contain only ASCII characters (without unicode processing).
SimpleCharStream(Reader, int, int, int) - Constructor for class uk.ac.bbk.dcs.automed.qproc.annotate.grammars.simpleCompAppend.SimpleCharStream
 
SimpleCharStream(Reader, int, int) - Constructor for class uk.ac.bbk.dcs.automed.qproc.annotate.grammars.simpleCompAppend.SimpleCharStream
 
SimpleCharStream(Reader) - Constructor for class uk.ac.bbk.dcs.automed.qproc.annotate.grammars.simpleCompAppend.SimpleCharStream
 
SimpleCharStream(InputStream, int, int, int) - Constructor for class uk.ac.bbk.dcs.automed.qproc.annotate.grammars.simpleCompAppend.SimpleCharStream
 
SimpleCharStream(InputStream, int, int) - Constructor for class uk.ac.bbk.dcs.automed.qproc.annotate.grammars.simpleCompAppend.SimpleCharStream
 
SimpleCharStream(InputStream) - Constructor for class uk.ac.bbk.dcs.automed.qproc.annotate.grammars.simpleCompAppend.SimpleCharStream
 
SimpleCharStream - Class in uk.ac.bbk.dcs.automed.qproc.annotate.grammars.simpleCompAppendMonus
An implementation of interface CharStream, where the stream is assumed to contain only ASCII characters (without unicode processing).
SimpleCharStream(Reader, int, int, int) - Constructor for class uk.ac.bbk.dcs.automed.qproc.annotate.grammars.simpleCompAppendMonus.SimpleCharStream
 
SimpleCharStream(Reader, int, int) - Constructor for class uk.ac.bbk.dcs.automed.qproc.annotate.grammars.simpleCompAppendMonus.SimpleCharStream
 
SimpleCharStream(Reader) - Constructor for class uk.ac.bbk.dcs.automed.qproc.annotate.grammars.simpleCompAppendMonus.SimpleCharStream
 
SimpleCharStream(InputStream, int, int, int) - Constructor for class uk.ac.bbk.dcs.automed.qproc.annotate.grammars.simpleCompAppendMonus.SimpleCharStream
 
SimpleCharStream(InputStream, int, int) - Constructor for class uk.ac.bbk.dcs.automed.qproc.annotate.grammars.simpleCompAppendMonus.SimpleCharStream
 
SimpleCharStream(InputStream) - Constructor for class uk.ac.bbk.dcs.automed.qproc.annotate.grammars.simpleCompAppendMonus.SimpleCharStream
 
SimpleCharStream - Class in uk.ac.bbk.dcs.automed.qproc.translators.xquery
An implementation of interface CharStream, where the stream is assumed to contain only ASCII characters (without unicode processing).
SimpleCharStream(Reader, int, int, int) - Constructor for class uk.ac.bbk.dcs.automed.qproc.translators.xquery.SimpleCharStream
 
SimpleCharStream(Reader, int, int) - Constructor for class uk.ac.bbk.dcs.automed.qproc.translators.xquery.SimpleCharStream
 
SimpleCharStream(Reader) - Constructor for class uk.ac.bbk.dcs.automed.qproc.translators.xquery.SimpleCharStream
 
SimpleCharStream(InputStream, int, int, int) - Constructor for class uk.ac.bbk.dcs.automed.qproc.translators.xquery.SimpleCharStream
 
SimpleCharStream(InputStream, int, int) - Constructor for class uk.ac.bbk.dcs.automed.qproc.translators.xquery.SimpleCharStream
 
SimpleCharStream(InputStream) - Constructor for class uk.ac.bbk.dcs.automed.qproc.translators.xquery.SimpleCharStream
 
SimpleComp - Class in uk.ac.bbk.dcs.automed.qproc.annotate.grammars.simpleComp
 
SimpleComp(InputStream) - Constructor for class uk.ac.bbk.dcs.automed.qproc.annotate.grammars.simpleComp.SimpleComp
 
SimpleComp(Reader) - Constructor for class uk.ac.bbk.dcs.automed.qproc.annotate.grammars.simpleComp.SimpleComp
 
SimpleComp(SimpleCompTokenManager) - Constructor for class uk.ac.bbk.dcs.automed.qproc.annotate.grammars.simpleComp.SimpleComp
 
SimpleCompAppend - Class in uk.ac.bbk.dcs.automed.qproc.annotate.grammars.simpleCompAppend
 
SimpleCompAppend(InputStream) - Constructor for class uk.ac.bbk.dcs.automed.qproc.annotate.grammars.simpleCompAppend.SimpleCompAppend
 
SimpleCompAppend(Reader) - Constructor for class uk.ac.bbk.dcs.automed.qproc.annotate.grammars.simpleCompAppend.SimpleCompAppend
 
SimpleCompAppend(SimpleCompAppendTokenManager) - Constructor for class uk.ac.bbk.dcs.automed.qproc.annotate.grammars.simpleCompAppend.SimpleCompAppend
 
SimpleCompAppendConstants - Interface in uk.ac.bbk.dcs.automed.qproc.annotate.grammars.simpleCompAppend
 
SimpleCompAppendMonus - Class in uk.ac.bbk.dcs.automed.qproc.annotate.grammars.simpleCompAppendMonus
 
SimpleCompAppendMonus(InputStream) - Constructor for class uk.ac.bbk.dcs.automed.qproc.annotate.grammars.simpleCompAppendMonus.SimpleCompAppendMonus
 
SimpleCompAppendMonus(Reader) - Constructor for class uk.ac.bbk.dcs.automed.qproc.annotate.grammars.simpleCompAppendMonus.SimpleCompAppendMonus
 
SimpleCompAppendMonus(SimpleCompAppendMonusTokenManager) - Constructor for class uk.ac.bbk.dcs.automed.qproc.annotate.grammars.simpleCompAppendMonus.SimpleCompAppendMonus
 
SimpleCompAppendMonusConstants - Interface in uk.ac.bbk.dcs.automed.qproc.annotate.grammars.simpleCompAppendMonus
 
SimpleCompAppendMonusTokenManager - Class in uk.ac.bbk.dcs.automed.qproc.annotate.grammars.simpleCompAppendMonus
 
SimpleCompAppendMonusTokenManager(SimpleCharStream) - Constructor for class uk.ac.bbk.dcs.automed.qproc.annotate.grammars.simpleCompAppendMonus.SimpleCompAppendMonusTokenManager
 
SimpleCompAppendMonusTokenManager(SimpleCharStream, int) - Constructor for class uk.ac.bbk.dcs.automed.qproc.annotate.grammars.simpleCompAppendMonus.SimpleCompAppendMonusTokenManager
 
SimpleCompAppendTokenManager - Class in uk.ac.bbk.dcs.automed.qproc.annotate.grammars.simpleCompAppend
 
SimpleCompAppendTokenManager(SimpleCharStream) - Constructor for class uk.ac.bbk.dcs.automed.qproc.annotate.grammars.simpleCompAppend.SimpleCompAppendTokenManager
 
SimpleCompAppendTokenManager(SimpleCharStream, int) - Constructor for class uk.ac.bbk.dcs.automed.qproc.annotate.grammars.simpleCompAppend.SimpleCompAppendTokenManager
 
SimpleCompConstants - Interface in uk.ac.bbk.dcs.automed.qproc.annotate.grammars.simpleComp
 
simpleComprehension() - Method in class uk.ac.bbk.dcs.automed.qproc.annotate.grammars.simpleComp.SimpleComp
 
simpleComprehension() - Method in class uk.ac.bbk.dcs.automed.qproc.annotate.grammars.simpleCompAppend.SimpleCompAppend
 
simpleComprehension() - Method in class uk.ac.bbk.dcs.automed.qproc.annotate.grammars.simpleCompAppendMonus.SimpleCompAppendMonus
 
SimpleCompTokenManager - Class in uk.ac.bbk.dcs.automed.qproc.annotate.grammars.simpleComp
 
SimpleCompTokenManager(SimpleCharStream) - Constructor for class uk.ac.bbk.dcs.automed.qproc.annotate.grammars.simpleComp.SimpleCompTokenManager
 
SimpleCompTokenManager(SimpleCharStream, int) - Constructor for class uk.ac.bbk.dcs.automed.qproc.annotate.grammars.simpleComp.SimpleCompTokenManager
 
simpleFilter() - Method in class uk.ac.bbk.dcs.automed.qproc.annotate.grammars.simpleComp.SimpleComp
 
simpleFilter() - Method in class uk.ac.bbk.dcs.automed.qproc.annotate.grammars.simpleCompAppend.SimpleCompAppend
 
simpleFilter() - Method in class uk.ac.bbk.dcs.automed.qproc.annotate.grammars.simpleCompAppendMonus.SimpleCompAppendMonus
 
simpleGenerator() - Method in class uk.ac.bbk.dcs.automed.qproc.annotate.grammars.simpleComp.SimpleComp
 
simpleGenerator() - Method in class uk.ac.bbk.dcs.automed.qproc.annotate.grammars.simpleCompAppend.SimpleCompAppend
 
simpleGenerator() - Method in class uk.ac.bbk.dcs.automed.qproc.annotate.grammars.simpleCompAppendMonus.SimpleCompAppendMonus
 
simpleList() - Method in class uk.ac.bbk.dcs.automed.qproc.annotate.grammars.simpleComp.SimpleComp
 
simpleList() - Method in class uk.ac.bbk.dcs.automed.qproc.annotate.grammars.simpleCompAppend.SimpleCompAppend
 
simpleList() - Method in class uk.ac.bbk.dcs.automed.qproc.annotate.grammars.simpleCompAppendMonus.SimpleCompAppendMonus
 
simpleListTokens() - Method in class uk.ac.bbk.dcs.automed.qproc.annotate.grammars.simpleComp.SimpleComp
 
simpleListTokens() - Method in class uk.ac.bbk.dcs.automed.qproc.annotate.grammars.simpleCompAppend.SimpleCompAppend
 
simpleListTokens() - Method in class uk.ac.bbk.dcs.automed.qproc.annotate.grammars.simpleCompAppendMonus.SimpleCompAppendMonus
 
SimpleMessageHandler - Class in uk.ac.ic.doc.automed.p2p
 
SimpleMessageHandler() - Constructor for class uk.ac.ic.doc.automed.p2p.SimpleMessageHandler
Creates a new instance of SimpleMessageHandler
simpleQuals() - Method in class uk.ac.bbk.dcs.automed.qproc.annotate.grammars.simpleComp.SimpleComp
 
simpleQuals() - Method in class uk.ac.bbk.dcs.automed.qproc.annotate.grammars.simpleCompAppend.SimpleCompAppend
 
simpleQuals() - Method in class uk.ac.bbk.dcs.automed.qproc.annotate.grammars.simpleCompAppendMonus.SimpleCompAppendMonus
 
simpleScheme() - Method in class uk.ac.bbk.dcs.automed.qproc.annotate.grammars.schemes.Schemes
 
simpleScheme() - Method in class uk.ac.bbk.dcs.automed.qproc.annotate.grammars.simpleComp.SimpleComp
 
simpleScheme() - Method in class uk.ac.bbk.dcs.automed.qproc.annotate.grammars.simpleCompAppend.SimpleCompAppend
 
simpleScheme() - Method in class uk.ac.bbk.dcs.automed.qproc.annotate.grammars.simpleCompAppendMonus.SimpleCompAppendMonus
 
simpleSchemeOrSimpleComp() - Method in class uk.ac.bbk.dcs.automed.qproc.annotate.grammars.simpleCompAppend.SimpleCompAppend
 
simpleSchemeOrSimpleComp() - Method in class uk.ac.bbk.dcs.automed.qproc.annotate.grammars.simpleCompAppendMonus.SimpleCompAppendMonus
 
simpleTuple() - Method in class uk.ac.bbk.dcs.automed.qproc.annotate.grammars.simpleComp.SimpleComp
 
simpleTuple() - Method in class uk.ac.bbk.dcs.automed.qproc.annotate.grammars.simpleCompAppend.SimpleCompAppend
 
simpleTuple() - Method in class uk.ac.bbk.dcs.automed.qproc.annotate.grammars.simpleCompAppendMonus.SimpleCompAppendMonus
 
simplifyBasedOnEquijoins(Cell) - Static method in class uk.ac.bbk.dcs.automed.qproc.iql.IQLUtility
Traverses query and replaces certain comprehensions with [].
simplifyBasedOnQualifiers(Cell) - Static method in class uk.ac.bbk.dcs.automed.qproc.iql.IQLUtility
Performs in a bottom-up manner the following simplifications:
simplifyPathway(Pathway) - Method in class uk.ac.bbk.dcs.automed.evolution.schemaModelEvolution.SMEvolution
The current implementation of this method is null.
simplifyPathway(Schema, Schema) - Method in class uk.ac.bbk.dcs.automed.evolution.schemaModelEvolution.SMEvolution
This is over loaded method to simplify the pathway between two schemas.
simplifyPathway(Pathway) - Method in class uk.ac.bbk.dcs.automed.evolution2.schemaEvolution.SchemaEvolution
The current implementation of this method is null.
simplifyPathway(Schema, Schema) - Method in class uk.ac.bbk.dcs.automed.evolution2.schemaEvolution.SchemaEvolution
This is over loaded method to simplify the pathway between two schemas.
simplifyRange(Cell) - Static method in class uk.ac.bbk.dcs.automed.qproc.iql.IQLUtility
 
simplifyUnionIntersect(Cell) - Static method in class uk.ac.bbk.dcs.automed.qproc.iql.IQLUtility
Simplifies the input query so that union Void Void returns Void and intersect Any Any returns Any
Single - Class in uk.ac.bbk.dcs.automed.qproc.functions.collections
 
Single() - Constructor for class uk.ac.bbk.dcs.automed.qproc.functions.collections.Single
 
SINGLE - Static variable in class uk.ac.ic.doc.automed.editor.UserActionClass
 
SINGLE_HANDLER_PER_EVENT - Static variable in class uk.ac.ic.doc.automed.p2p.Constants
assume that only one hander is registered for a network event
SINGLE_HANDLER_PER_EVENT - Static variable in class uk.ac.ic.doc.automed.p2p.directory.P2PDirectory
 
SingleBag - Class in uk.ac.bbk.dcs.automed.qproc.functions.collections
 
SingleBag() - Constructor for class uk.ac.bbk.dcs.automed.qproc.functions.collections.SingleBag
 
SingleSet - Class in uk.ac.bbk.dcs.automed.qproc.functions.collections
 
SingleSet() - Constructor for class uk.ac.bbk.dcs.automed.qproc.functions.collections.SingleSet
 
singleton() - Method in class uk.ac.bbk.dcs.automed.qproc.iql.Cell
Returns the root of an ASG representing an empty list
SINGLETON_METHOD - Static variable in class uk.ac.ic.doc.automed.util.ModuleConnector
 
size() - Method in class uk.ac.bbk.dcs.automed.graph.DirectedGraph
 
size() - Method in class uk.ac.ic.doc.automed.editor.autolayout.AutoLayout
 
size() - Method in class uk.ac.ic.doc.automed.reps.Pathway
Returns the number of Schemas in the pathway.
size() - Method in class uk.ac.ic.doc.automed.tml.TempPathway
 
size() - Method in class uk.ac.ic.doc.automed.util.db.DBResultSet
return the total number of database records
size() - Method in class uk.ac.ic.doc.automed.wrappers.AutoMedTuple
 
SIZE_THRESHOLD - Static variable in class uk.ac.ic.doc.automed.p2p.Constants
true threshold to differentiate b/w single- and multi-fragment UDP trunks
skipTokens(int) - Method in class uk.ac.ic.doc.automed.xml.XMLReader
 
skipTokens(int[]) - Method in class uk.ac.ic.doc.automed.xml.XMLReader
 
skipToNextToken(int) - Method in class uk.ac.ic.doc.automed.xml.XMLReader
 
skipToNextToken(int[]) - Method in class uk.ac.ic.doc.automed.xml.XMLReader
 
SkolemiseEdge - Class in uk.ac.bbk.dcs.automed.xml.functions
Function that produces element UIDs based on the two arguments passed to the function.
SkolemiseEdge() - Constructor for class uk.ac.bbk.dcs.automed.xml.functions.SkolemiseEdge
 
SkolemTypeICase1 - Class in uk.ac.bbk.dcs.automed.xml.experiments.skolem
Class Task Description
SkolemTypeICase1() - Constructor for class uk.ac.bbk.dcs.automed.xml.experiments.skolem.SkolemTypeICase1
 
SkolemTypeICase2 - Class in uk.ac.bbk.dcs.automed.xml.experiments.skolem
Class Task Description
SkolemTypeICase2() - Constructor for class uk.ac.bbk.dcs.automed.xml.experiments.skolem.SkolemTypeICase2
 
SkolemTypeICase3 - Class in uk.ac.bbk.dcs.automed.xml.experiments.skolem
Class Task Description
SkolemTypeICase3() - Constructor for class uk.ac.bbk.dcs.automed.xml.experiments.skolem.SkolemTypeICase3
 
SkolemTypeIICase1 - Class in uk.ac.bbk.dcs.automed.xml.experiments.skolem
Class Task Description
SkolemTypeIICase1() - Constructor for class uk.ac.bbk.dcs.automed.xml.experiments.skolem.SkolemTypeIICase1
 
SkolemTypeIICase2 - Class in uk.ac.bbk.dcs.automed.xml.experiments.skolem
Class Task Description
SkolemTypeIICase2() - Constructor for class uk.ac.bbk.dcs.automed.xml.experiments.skolem.SkolemTypeIICase2
 
SkolemTypeIICase3 - Class in uk.ac.bbk.dcs.automed.xml.experiments.skolem
Class Task Description
SkolemTypeIICase3() - Constructor for class uk.ac.bbk.dcs.automed.xml.experiments.skolem.SkolemTypeIICase3
 
SkolemTypeIIICase1 - Class in uk.ac.bbk.dcs.automed.xml.experiments.skolem
Class Task Description
SkolemTypeIIICase1() - Constructor for class uk.ac.bbk.dcs.automed.xml.experiments.skolem.SkolemTypeIIICase1
 
SkolemTypeIIICase2 - Class in uk.ac.bbk.dcs.automed.xml.experiments.skolem
Class Task Description
SkolemTypeIIICase2() - Constructor for class uk.ac.bbk.dcs.automed.xml.experiments.skolem.SkolemTypeIIICase2
 
SkolemTypeIIICase3 - Class in uk.ac.bbk.dcs.automed.xml.experiments.skolem
Class Task Description
SkolemTypeIIICase3() - Constructor for class uk.ac.bbk.dcs.automed.xml.experiments.skolem.SkolemTypeIIICase3
 
SkolemTypeIIICase4 - Class in uk.ac.bbk.dcs.automed.xml.experiments.skolem
Class Task Description
SkolemTypeIIICase4() - Constructor for class uk.ac.bbk.dcs.automed.xml.experiments.skolem.SkolemTypeIIICase4
 
SkolemTypeIVCase1 - Class in uk.ac.bbk.dcs.automed.xml.experiments.skolem
Class Task Description
SkolemTypeIVCase1() - Constructor for class uk.ac.bbk.dcs.automed.xml.experiments.skolem.SkolemTypeIVCase1
 
SkolemTypeIVCase2 - Class in uk.ac.bbk.dcs.automed.xml.experiments.skolem
Class Task Description
SkolemTypeIVCase2() - Constructor for class uk.ac.bbk.dcs.automed.xml.experiments.skolem.SkolemTypeIVCase2
 
SkolemTypeIVCase3 - Class in uk.ac.bbk.dcs.automed.xml.experiments.skolem
Class Task Description
SkolemTypeIVCase3() - Constructor for class uk.ac.bbk.dcs.automed.xml.experiments.skolem.SkolemTypeIVCase3
 
SkolemTypeIVCase4 - Class in uk.ac.bbk.dcs.automed.xml.experiments.skolem
Class Task Description
SkolemTypeIVCase4() - Constructor for class uk.ac.bbk.dcs.automed.xml.experiments.skolem.SkolemTypeIVCase4
 
SkolemTypeIVCase5 - Class in uk.ac.bbk.dcs.automed.xml.experiments.skolem
Class Task Description
SkolemTypeIVCase5() - Constructor for class uk.ac.bbk.dcs.automed.xml.experiments.skolem.SkolemTypeIVCase5
 
SLASHATTR - Static variable in interface uk.ac.bbk.dcs.automed.qproc.translators.xquery.XQuery2IQLConstants
 
SLSB - Static variable in class uk.ac.bbk.dcs.automed.qproc.iql.QSym
 
SMEvolution - Class in uk.ac.bbk.dcs.automed.evolution.schemaModelEvolution
 
SMEvolution(int, boolean, Schema, Schema) - Constructor for class uk.ac.bbk.dcs.automed.evolution.schemaModelEvolution.SMEvolution
 
SMEvolutionException - Exception in uk.ac.bbk.dcs.automed.evolution.schemaModelEvolution
 
SMEvolutionException(String) - Constructor for exception uk.ac.bbk.dcs.automed.evolution.schemaModelEvolution.SMEvolutionException
 
so - Variable in class uk.ac.ic.doc.automed.wrappers.xsdomobject.XSDOMObject
The schema object initially associated with this object
SOME - Static variable in interface uk.ac.bbk.dcs.automed.qproc.translators.xquery.XQuery2IQLConstants
 
Sort - Class in uk.ac.bbk.dcs.automed.qproc.functions.collections
 
Sort() - Constructor for class uk.ac.bbk.dcs.automed.qproc.functions.collections.Sort
 
sort() - Method in class uk.ac.bbk.dcs.automed.qproc.functions.ModifiedArray
 
SortDistinct - Class in uk.ac.bbk.dcs.automed.qproc.functions.collections
 
SortDistinct() - Constructor for class uk.ac.bbk.dcs.automed.qproc.functions.collections.SortDistinct
 
sorted() - Method in class uk.ac.bbk.dcs.automed.qproc.functions.ModifiedArray
 
source_background_colour - Variable in class uk.ac.ic.doc.automed.wrappers.SQLWrapperFactory
 
SOURCE_PREFIX - Static variable in class uk.ac.ic.doc.automed.wrappers.AutoMedWrapperFactory
String prefixed to AutoMed oriented Model names in order to obtain source oriented Model names.
sourceSchema - Variable in class uk.ac.bbk.dcs.automed.qproc.reformulate.GAVQueryReformulationProvider
 
Span - Class in uk.ac.bbk.dcs.automed.hdmstore
A Span represents one element in a HDM edge.
special - Static variable in class uk.ac.bbk.dcs.automed.qproc.iql.Cell
 
Special - Static variable in class uk.ac.bbk.dcs.automed.qproc.iql.QSym
 
specialConstructor - Variable in exception uk.ac.bbk.dcs.automed.qproc.annotate.grammars.schemes.ParseException
This variable determines which constructor was used to create this object and thereby affects the semantics of the "getMessage" method (see below).
specialConstructor - Variable in exception uk.ac.bbk.dcs.automed.qproc.annotate.grammars.simpleComp.ParseException
This variable determines which constructor was used to create this object and thereby affects the semantics of the "getMessage" method (see below).
specialConstructor - Variable in exception uk.ac.bbk.dcs.automed.qproc.annotate.grammars.simpleCompAppend.ParseException
This variable determines which constructor was used to create this object and thereby affects the semantics of the "getMessage" method (see below).
specialConstructor - Variable in exception uk.ac.bbk.dcs.automed.qproc.annotate.grammars.simpleCompAppendMonus.ParseException
This variable determines which constructor was used to create this object and thereby affects the semantics of the "getMessage" method (see below).
specialConstructor - Variable in exception uk.ac.bbk.dcs.automed.qproc.translators.xquery.ParseException
This variable determines which constructor was used to create this object and thereby affects the semantics of the "getMessage" method (see below).
specialToken - Variable in class uk.ac.bbk.dcs.automed.qproc.annotate.grammars.schemes.Token
This field is used to access special tokens that occur prior to this token, but after the immediately preceding regular (non-special) token.
specialToken - Variable in class uk.ac.bbk.dcs.automed.qproc.annotate.grammars.simpleComp.Token
This field is used to access special tokens that occur prior to this token, but after the immediately preceding regular (non-special) token.
specialToken - Variable in class uk.ac.bbk.dcs.automed.qproc.annotate.grammars.simpleCompAppend.Token
This field is used to access special tokens that occur prior to this token, but after the immediately preceding regular (non-special) token.
specialToken - Variable in class uk.ac.bbk.dcs.automed.qproc.annotate.grammars.simpleCompAppendMonus.Token
This field is used to access special tokens that occur prior to this token, but after the immediately preceding regular (non-special) token.
specialToken - Variable in class uk.ac.bbk.dcs.automed.qproc.translators.xquery.Token
This field is used to access special tokens that occur prior to this token, but after the immediately preceding regular (non-special) token.
Split - Class in uk.ac.bbk.dcs.automed.qproc.functions.string
Look at the corresponding Java API definition.
Split() - Constructor for class uk.ac.bbk.dcs.automed.qproc.functions.string.Split
 
split(String, String, int) - Static method in class uk.ac.ic.doc.automed.Util
A classic-version of split-string method which does NOT support RegExp
split(String, String) - Static method in class uk.ac.ic.doc.automed.Util
Split a delimited string dmle 27/2/2006
splitCDATA(String) - Static method in class uk.ac.ic.doc.automed.xml.XMLSyntax
Thorws XMLSyntaxException if the String is null.
sql - Variable in class uk.ac.ic.doc.automed.wrappers.SQLWrapperFactory
 
SQL_MODEL_FOREIGN_KEY - Static variable in class uk.ac.ic.doc.automed.wrappers.SQLWrapperFactory
 
SQL_MODEL_INDEX - Static variable in class uk.ac.ic.doc.automed.wrappers.SQLWrapperFactory
 
SQL_MODEL_PRIMARY_KEY - Static variable in class uk.ac.ic.doc.automed.wrappers.SQLWrapperFactory
 
SQL_MODEL_TABLE - Static variable in class uk.ac.ic.doc.automed.wrappers.SQLWrapperFactory
The name of the Construct used to represent SQL tables.
SQLFunctions - Class in uk.ac.ic.doc.automed.util.db
 
SQLFunctions() - Constructor for class uk.ac.ic.doc.automed.util.db.SQLFunctions
 
SQLIntegrator - Class in uk.ac.ic.doc.automed.matching
The Integrator of SQL schemas
SQLIntegrator() - Constructor for class uk.ac.ic.doc.automed.matching.SQLIntegrator
 
SQLQuery - Class in uk.ac.ic.doc.automed.wrappers
An SQLQuery expression tree that can be generated by the high level wrapper SQLWrapper and used by a low level wrapper as the basis for generating SQL queries on a relational database.
SQLQuery(AutoMedQueryToken, Object[]) - Constructor for class uk.ac.ic.doc.automed.wrappers.SQLQuery
 
SQLQuery(AutoMedQueryToken, Object) - Constructor for class uk.ac.ic.doc.automed.wrappers.SQLQuery
 
SQLRelationshipExtractor - Class in uk.ac.ic.doc.automed.matching
The class for the extraction of relationships between SQL schema elements.
SQLRelationshipExtractor() - Constructor for class uk.ac.ic.doc.automed.matching.SQLRelationshipExtractor
 
SQLResult - Class in uk.ac.ic.doc.automed.wrappers
Provides a representation of the data associated with a scheme in an AutoMed Schema.
SQLResult(int) - Constructor for class uk.ac.ic.doc.automed.wrappers.SQLResult
return the instance of the scheme which the cursor currently points at, as an ArrayList of Objects.
SQLTranslator - Class in uk.ac.bbk.dcs.automed.wrappers
 
SQLTranslator() - Constructor for class uk.ac.bbk.dcs.automed.wrappers.SQLTranslator
 
SQLWrapper - Class in uk.ac.ic.doc.automed.wrappers
An AutoMed high wrapper for connecting to SQL databases that have a JBDC driver.
SQLWrapper() - Constructor for class uk.ac.ic.doc.automed.wrappers.SQLWrapper
 
SQLWrapper(AccessMethod, String) - Constructor for class uk.ac.ic.doc.automed.wrappers.SQLWrapper
 
SQLWrapperFactory - Class in uk.ac.ic.doc.automed.wrappers
An AutoMed high wrapper factory for creating SQLWrapper instances.
SQLWrapperFactory() - Constructor for class uk.ac.ic.doc.automed.wrappers.SQLWrapperFactory
 
SQLWrapperSKJOptimiser - Class in uk.ac.bbk.dcs.automed.qproc.optimise.optimisers
Removes self-key joins occurring because of the dual layer of schemas that the SQLWrapperFactory class introduces.
SQLWrapperSKJOptimiser(Schema[]) - Constructor for class uk.ac.bbk.dcs.automed.qproc.optimise.optimisers.SQLWrapperSKJOptimiser
Gathers primary key metadata from the schemas given as input.
src - Variable in class uk.ac.bbk.dcs.automed.qproc.OldQueryProcessor
 
SRC_ADDRESS - Static variable in class uk.ac.ic.doc.automed.p2p.communication.ResponseHandler
 
SRCP - Class in uk.ac.ic.doc.rodex.p2p.protocol
SRCP.java

Schema Resource Control Protocol: provides standard interface functions for acquiring schema resources, e.g.
SSDFormat - Class in uk.ac.ic.doc.automed.ssd
The SSDFormat class represents a format of a particular semistructured datasource as a set of SSDPatterns.
SSDFormat(String) - Constructor for class uk.ac.ic.doc.automed.ssd.SSDFormat
 
SSDFunctionTable - Class in uk.ac.ic.doc.automed.wrappers
 
SSDFunctionTable() - Constructor for class uk.ac.ic.doc.automed.wrappers.SSDFunctionTable
 
SSDPattern - Class in uk.ac.ic.doc.automed.ssd
The SSDPattern class represents a pattern used in a particular SSDFormat.
SSDPattern(Pattern) - Constructor for class uk.ac.ic.doc.automed.ssd.SSDPattern
 
SSDPattern(int) - Constructor for class uk.ac.ic.doc.automed.ssd.SSDPattern
 
ssingleton() - Method in class uk.ac.bbk.dcs.automed.qproc.iql.Cell
Returns the root of an ASG representing an empty set
SSMDR - Class in uk.ac.ic.doc.automed
The SSMD library<<
SSMDR() - Constructor for class uk.ac.ic.doc.automed.SSMDR
 
SSMDR_DataSourceName - Static variable in class uk.ac.ic.doc.automed.SSMDR
 
SSMDRException - Exception in uk.ac.ic.doc.automed
The class of exceptions generated by SSMD.
SSMDRException(String) - Constructor for exception uk.ac.ic.doc.automed.SSMDRException
Creates a SSMDException.
standalone - Variable in class uk.ac.ic.doc.automed.editor.Gui
 
StandardFoldFunctionTable - Class in uk.ac.bbk.dcs.automed.qproc.optimise
 
StandardFoldFunctionTable() - Constructor for class uk.ac.bbk.dcs.automed.qproc.optimise.StandardFoldFunctionTable
 
StandardFunctionTable - Class in uk.ac.bbk.dcs.automed.qproc
Class that creates a FunctionTable containing all currently implemented functions.
StandardFunctionTable() - Constructor for class uk.ac.bbk.dcs.automed.qproc.StandardFunctionTable
 
StandardOptimisationProvider - Class in uk.ac.bbk.dcs.automed.qproc.optimise
This class coordinates the application of the logical optimisations.
StandardOptimisationProvider() - Constructor for class uk.ac.bbk.dcs.automed.qproc.optimise.StandardOptimisationProvider
 
StandardOptimisationProvider(Schema, Schema[]) - Constructor for class uk.ac.bbk.dcs.automed.qproc.optimise.StandardOptimisationProvider
 
StandardQueryAnnotationProvider - Class in uk.ac.bbk.dcs.automed.qproc.annotate
This class annotates an input IQL query in the form of an ASG by inserting wrapper objects in the original ASG structure.
StandardQueryAnnotationProvider() - Constructor for class uk.ac.bbk.dcs.automed.qproc.annotate.StandardQueryAnnotationProvider
 
StandardQueryAnnotationProvider(Schema[]) - Constructor for class uk.ac.bbk.dcs.automed.qproc.annotate.StandardQueryAnnotationProvider
Deprecated. use QueryAnnotationFactory to obtain an instance of this class.
standardStroke - Static variable in class uk.ac.ic.doc.automed.editor.DrawArc
 
standardStroke - Static variable in class uk.ac.ic.doc.automed.editor.DrawVertex
 
STAR - Static variable in interface uk.ac.bbk.dcs.automed.qproc.translators.xquery.XQuery2IQLConstants
 
start(String) - Method in class uk.ac.ic.doc.automed.xml.XMLReader
 
start(InputSource) - Method in class uk.ac.ic.doc.automed.xml.XMLReader
 
start() - Method in class uk.ac.ic.doc.automed.xml.XMLWriter
Output will be appended to the (initially empty) returned supplied StringBuffer
start(OutputStream) - Method in class uk.ac.ic.doc.automed.xml.XMLWriter
Output will be written to your supplied OutputStream using the encoding as returned by getEncoding()
start(Writer) - Method in class uk.ac.ic.doc.automed.xml.XMLWriter
Output will be written to your supplied Writer.
START_DOCUMENT - Static variable in interface uk.ac.ic.doc.automed.xml.XMLifyConstants
 
START_ELEMENT - Static variable in interface uk.ac.ic.doc.automed.xml.XMLifyConstants
 
start_production() - Method in class uk.ac.bbk.dcs.automed.qproc.iql.EnvParser
Indicates start production.
start_production() - Method in class uk.ac.bbk.dcs.automed.qproc.iql.QParser
Indicates start production.
start_state() - Method in class uk.ac.bbk.dcs.automed.qproc.iql.EnvParser
Indicates start state.
start_state() - Method in class uk.ac.bbk.dcs.automed.qproc.iql.QParser
Indicates start state.
startApplyInSpine - Variable in class uk.ac.bbk.dcs.automed.qproc.evaluate.Evaluator
 
startBuiltIn - Variable in class uk.ac.bbk.dcs.automed.qproc.evaluate.Evaluator
 
startDocument() - Method in class uk.ac.bbk.dcs.automed.xml.wrappers.XMLDSSSAX
 
startDocument() - Method in class uk.ac.ic.doc.automed.xml.XMLReader
 
startElement(String, String, String, Attributes) - Method in class uk.ac.bbk.dcs.automed.xml.wrappers.XMLDSSSAX
 
startElement(String, AttributeList) - Method in class uk.ac.ic.doc.automed.xml.XMLReader
 
startEval - Variable in class uk.ac.bbk.dcs.automed.qproc.evaluate.Evaluator
 
startProcess(ID, String, String) - Method in class uk.ac.ic.doc.automed.p2p.overlay.OverlayController
Start a DHT host with a pre-configured ID
startRL - Variable in class uk.ac.bbk.dcs.automed.qproc.evaluate.Evaluator
 
startThread() - Method in class uk.ac.ic.doc.automed.util.thread.AsynchThread
Start (rather resume) a thread's operation
startThread() - Method in class uk.ac.ic.doc.automed.util.thread.TimedThread
Start (rather resume) a thread's operation
startWHNF - Variable in class uk.ac.bbk.dcs.automed.qproc.evaluate.Evaluator
 
STAT_COLLECTOR_ADDRESS_AND_PORT - Static variable in class uk.ac.ic.doc.automed.p2p.overlay.OverlayController
 
STATE_HELLO_COMPLETE - Static variable in class uk.ac.ic.doc.automed.p2p.state.PeerStateHandler
 
STATE_HELLO_INIT - Static variable in class uk.ac.ic.doc.automed.p2p.state.PeerStateHandler
 
STATE_INIT - Static variable in class uk.ac.ic.doc.automed.p2p.state.PeerStateHandler
 
STATE_JOINED_GLOBAL - Static variable in class uk.ac.ic.doc.automed.p2p.state.PeerStateHandler
 
STATE_JOINED_LOCAL - Static variable in class uk.ac.ic.doc.automed.p2p.state.PeerStateHandler
 
STATE_REGISTER_GLOBAL - Static variable in class uk.ac.ic.doc.automed.p2p.state.PeerStateHandler
 
STATE_STAND_ALONE - Static variable in class uk.ac.ic.doc.automed.p2p.state.PeerStateHandler
 
StateChangedException - Exception in uk.ac.ic.doc.automed.p2p.state
 
StateChangedException(String, Throwable) - Constructor for exception uk.ac.ic.doc.automed.p2p.state.StateChangedException
Creates a new instance of StateChangedException
StateChangedException(String) - Constructor for exception uk.ac.ic.doc.automed.p2p.state.StateChangedException
 
StateChangedListener - Interface in uk.ac.ic.doc.automed.p2p.state
 
stateHandler - Variable in class uk.ac.ic.doc.automed.p2p.gui.LoginFrame
 
staticFlag - Static variable in class uk.ac.bbk.dcs.automed.qproc.annotate.grammars.schemes.SimpleCharStream
 
staticFlag - Static variable in class uk.ac.bbk.dcs.automed.qproc.annotate.grammars.simpleComp.SimpleCharStream
 
staticFlag - Static variable in class uk.ac.bbk.dcs.automed.qproc.annotate.grammars.simpleCompAppend.SimpleCharStream
 
staticFlag - Static variable in class uk.ac.bbk.dcs.automed.qproc.annotate.grammars.simpleCompAppendMonus.SimpleCharStream
 
staticFlag - Static variable in class uk.ac.bbk.dcs.automed.qproc.translators.xquery.SimpleCharStream
 
StatisticsModule - Class in uk.ac.ic.doc.automed.matching.modules.bidirectionalmap
The module that compares the schema elements based on statistic information of the appearance of special characters on their instances
StatisticsModule(SchemaElement[], SchemaElement[]) - Constructor for class uk.ac.ic.doc.automed.matching.modules.bidirectionalmap.StatisticsModule
Constructs a StatisticsModule to compare the specified schema elements in the input arrays.
StatisticsModule(SchemaElementPair[]) - Constructor for class uk.ac.ic.doc.automed.matching.modules.bidirectionalmap.StatisticsModule
 
StatisticsModule(ArrayList, ArrayList) - Constructor for class uk.ac.ic.doc.automed.matching.modules.bidirectionalmap.StatisticsModule
Constructs a StatisticsModule to compare the specified schema elements in the input lists.
StatisticsModule - Class in uk.ac.ic.doc.automed.matching.modules.intervals
The module that compares the schema elements based on statistic information of the appearance of special characters on their instances
StatisticsModule(SchemaElementPair[]) - Constructor for class uk.ac.ic.doc.automed.matching.modules.intervals.StatisticsModule
 
StatisticsModule - Class in uk.ac.ic.doc.automed.matching.modules.probability.binary
The module that compares the schema elements based on statistic information of the appearance of special characters on their instances
StatisticsModule(SchemaElementPair[]) - Constructor for class uk.ac.ic.doc.automed.matching.modules.probability.binary.StatisticsModule
 
StatisticsModule - Class in uk.ac.ic.doc.automed.matching.modules.probability.senary
The module that compares the schema elements based on statistic information of the appearance of special characters on their instances
StatisticsModule(SchemaElementPair[]) - Constructor for class uk.ac.ic.doc.automed.matching.modules.probability.senary.StatisticsModule
 
STATUS - Static variable in class uk.ac.ic.doc.automed.p2p.protocol.P2PConstants
 
stopAll() - Method in class uk.ac.ic.doc.automed.p2p.AutoMedMessagingHelper
 
stopped() - Method in class uk.ac.ic.doc.automed.editor.MatchingTool
 
stopThread() - Method in class uk.ac.ic.doc.automed.util.thread.AsynchThread
Stop (rather pause) a thread
stopThread() - Method in class uk.ac.ic.doc.automed.util.thread.TimedThread
Stop (rather pause) a thread
STORED_TYPE - Static variable in class uk.ac.ic.doc.automed.reps.Schema
All details about the constructs of STORED_TYPE schemas are held in the repository, and this type my exist in isolation..
STR - Class in uk.ac.ic.doc.automed
The STR library.
STR() - Constructor for class uk.ac.ic.doc.automed.STR
 
STR_DataSourceName - Static variable in class uk.ac.ic.doc.automed.STR
 
STRException - Exception in uk.ac.ic.doc.automed
The class of exceptions generated by STR.
STRException(String) - Constructor for exception uk.ac.ic.doc.automed.STRException
Creates a STRException.
STRING - Static variable in class uk.ac.bbk.dcs.automed.qproc.iql.TypeConstants
 
string - Static variable in class uk.ac.ic.doc.automed.reps.Syntax.Token
 
STRING - Static variable in class uk.ac.ic.doc.automed.wrappers.AutoMedQuery
 
STRING - Static variable in class uk.ac.ic.doc.automed.wrappers.AutoMedType
Type to represent an arbitrary length string in the unicode character set.
STRING_TOKEN - Static variable in class uk.ac.ic.doc.automed.wrappers.AutoMedQuery
 
StringFunctionTable - Class in uk.ac.bbk.dcs.automed.qproc.functions.string
FunctionTable containing string-related IQL functions.
StringFunctionTable() - Constructor for class uk.ac.bbk.dcs.automed.qproc.functions.string.StringFunctionTable
 
StringHash - Interface in uk.ac.ic.doc.automed.util.hashing
StringHash.java
StringHashFactory - Class in uk.ac.ic.doc.automed.util.hashing
StringHashProvider.java

stringSafe(String) - Static method in class uk.ac.ic.doc.automed.reps.Syntax
 
STRINGTOKEN - Static variable in interface uk.ac.bbk.dcs.automed.qproc.translators.xquery.XQuery2IQLConstants
 
stringToObject(String, Class) - Static method in class uk.ac.ic.doc.automed.Util
 
stringType - Static variable in class uk.ac.bbk.dcs.automed.qproc.iql.Cell
 
stripUIDs(Document) - Static method in class uk.ac.bbk.dcs.automed.xml.utilities.UIDUtility
This method takes as input an XML document in DOM format, duplicates it, then strips the uids from the duplicated DOM.
STRMethodTest - Class in uk.ac.ic.doc.automed
 
STRMethodTest() - Constructor for class uk.ac.ic.doc.automed.STRMethodTest
 
STRTOKEN - Static variable in interface uk.ac.bbk.dcs.automed.qproc.annotate.grammars.schemes.SchemesConstants
 
STRTOKEN - Static variable in interface uk.ac.bbk.dcs.automed.qproc.annotate.grammars.simpleComp.SimpleCompConstants
 
STRTOKEN - Static variable in interface uk.ac.bbk.dcs.automed.qproc.annotate.grammars.simpleCompAppend.SimpleCompAppendConstants
 
STRTOKEN - Static variable in interface uk.ac.bbk.dcs.automed.qproc.annotate.grammars.simpleCompAppendMonus.SimpleCompAppendMonusConstants
 
StrToken - Static variable in class uk.ac.bbk.dcs.automed.qproc.iql.QSym
 
structure - Variable in class uk.ac.ic.doc.automed.p2p.directory.ModelDescription
 
structure - Variable in class uk.ac.ic.doc.automed.p2p.directory.SchemaDescription
 
SubClassOf - Static variable in class uk.ac.bbk.dcs.automed.rdfs.RDFSConstants
 
SubCollection - Class in uk.ac.bbk.dcs.automed.qproc.functions.collections
 
SubCollection() - Constructor for class uk.ac.bbk.dcs.automed.qproc.functions.collections.SubCollection
 
SubPropertyOf - Static variable in class uk.ac.bbk.dcs.automed.rdfs.RDFSConstants
 
Subset - Class in uk.ac.ic.doc.automed.matching.relationships
The Subset class represents the subset semantic relationship between SchemaElement objects.
Subset() - Constructor for class uk.ac.ic.doc.automed.matching.relationships.Subset
 
subsetOf(Set, Set) - Static method in class uk.ac.ic.doc.automed.util.SetUtil
 
Substring - Class in uk.ac.bbk.dcs.automed.qproc.functions.string
Returns a substring of the input string based on the two other integer arguments.
Substring() - Constructor for class uk.ac.bbk.dcs.automed.qproc.functions.string.Substring
 
substring2(String, String, String) - Static method in class uk.ac.bbk.dcs.automed.evolution2.EvolutionUtility
 
substring3(String, String, String) - Static method in class uk.ac.bbk.dcs.automed.evolution2.EvolutionUtility
 
Subsumption - Class in uk.ac.ic.doc.automed.matching.relationships
The Subsumption class represents the subsumption semantic relationship between SchemaElement objects.
Subsumption() - Constructor for class uk.ac.ic.doc.automed.matching.relationships.Subsumption
 
subsumptions - Variable in class uk.ac.ic.doc.automed.matching.Integrator
 
subtract(AutoMedFloat) - Method in class uk.ac.ic.doc.automed.wrappers.AutoMedFloat
Return the difference of two AutoMedFloats.
subtract(AutoMedInteger) - Method in class uk.ac.ic.doc.automed.wrappers.AutoMedInteger
Return the difference of two AutoMedIntegers.
subtractDate(Date, Date) - Static method in class uk.ac.ic.doc.automed.util.DateUtil
Subtract Date1 from Date2 to return the result as an array of numbers of hours, minutes, and seconds
subtractList(List, List) - Method in class uk.ac.ic.doc.rodex.qproc.MiniConQueryRewriter
 
Sum - Class in uk.ac.bbk.dcs.automed.qproc.functions.collections
 
Sum() - Constructor for class uk.ac.bbk.dcs.automed.qproc.functions.collections.Sum
 
Superset - Class in uk.ac.ic.doc.automed.matching.relationships
The Superset class represents the superset semantic relationship between SchemaElement objects.
Superset() - Constructor for class uk.ac.ic.doc.automed.matching.relationships.Superset
 
sval - Variable in class uk.ac.ic.doc.automed.reps.Syntax.Token
 
swap(int, int) - Method in class uk.ac.bbk.dcs.automed.qproc.functions.ModifiedArray
 
SwitchTo(int) - Method in class uk.ac.bbk.dcs.automed.qproc.annotate.grammars.schemes.SchemesTokenManager
 
SwitchTo(int) - Method in class uk.ac.bbk.dcs.automed.qproc.annotate.grammars.simpleComp.SimpleCompTokenManager
 
SwitchTo(int) - Method in class uk.ac.bbk.dcs.automed.qproc.annotate.grammars.simpleCompAppend.SimpleCompAppendTokenManager
 
SwitchTo(int) - Method in class uk.ac.bbk.dcs.automed.qproc.annotate.grammars.simpleCompAppendMonus.SimpleCompAppendMonusTokenManager
 
SwitchTo(int) - Method in class uk.ac.bbk.dcs.automed.qproc.translators.xquery.XQuery2IQLTokenManager
 
SYMBOL_TOKEN - Static variable in class uk.ac.ic.doc.automed.wrappers.AutoMedQuery
 
symbolHeight - Variable in class uk.ac.ic.doc.automed.editor.DrawVertex
 
symbolWidth - Variable in class uk.ac.ic.doc.automed.editor.DrawVertex
 
syncWithRepository() - Static method in class uk.ac.ic.doc.automed.reps.Transformation
 
Syntax - Class in uk.ac.ic.doc.automed.editor
 
Syntax() - Constructor for class uk.ac.ic.doc.automed.editor.Syntax
 
Syntax - Class in uk.ac.ic.doc.automed.reps
 
Syntax() - Constructor for class uk.ac.ic.doc.automed.reps.Syntax
 
Syntax.Token - Class in uk.ac.ic.doc.automed.reps
 
Syntax.Tokenizer - Class in uk.ac.ic.doc.automed.reps
 
Syntax.Tokenizer(Reader) - Constructor for class uk.ac.ic.doc.automed.reps.Syntax.Tokenizer
 
SyntaxException - Exception in uk.ac.ic.doc.automed.editor
 
SyntaxException(String, int) - Constructor for exception uk.ac.ic.doc.automed.editor.SyntaxException
 
SyntaxException - Exception in uk.ac.ic.doc.automed.reps
 
SyntaxException(String) - Constructor for exception uk.ac.ic.doc.automed.reps.SyntaxException
 
SyntaxException(String, Exception) - Constructor for exception uk.ac.ic.doc.automed.reps.SyntaxException
 
SyntaxException(String, int, String, String) - Constructor for exception uk.ac.ic.doc.automed.reps.SyntaxException
 
synthSuffix - Static variable in class uk.ac.bbk.dcs.automed.xml.XMLConstants
 
SysConsToken - Static variable in class uk.ac.bbk.dcs.automed.qproc.iql.QSym
 
sysConstructor - Static variable in class uk.ac.bbk.dcs.automed.qproc.iql.Cell
 
SYSTEM - Static variable in class uk.ac.ic.doc.automed.editor.UserActionClass
 
sysvariable - Static variable in class uk.ac.bbk.dcs.automed.qproc.iql.Cell
 
SYSVARTOKEN - Static variable in interface uk.ac.bbk.dcs.automed.qproc.annotate.grammars.simpleComp.SimpleCompConstants
 
SYSVARTOKEN - Static variable in interface uk.ac.bbk.dcs.automed.qproc.annotate.grammars.simpleCompAppend.SimpleCompAppendConstants
 
SYSVARTOKEN - Static variable in interface uk.ac.bbk.dcs.automed.qproc.annotate.grammars.simpleCompAppendMonus.SimpleCompAppendMonusConstants
 
SysVarToken - Static variable in class uk.ac.bbk.dcs.automed.qproc.iql.QSym
 

T

TABLE - Static variable in class uk.ac.ic.doc.automed.wrappers.SQLQuery
 
table - Variable in class uk.ac.ic.doc.automed.wrappers.SQLWrapperFactory
 
TABLE_ALIAS - Static variable in class uk.ac.ic.doc.automed.wrappers.SQLQuery
 
TablePanel - Class in uk.ac.ic.doc.automed.p2p.gui
 
TablePanel(JTable, JButton[], String) - Constructor for class uk.ac.ic.doc.automed.p2p.gui.TablePanel
 
tables - Variable in class uk.ac.ic.doc.automed.matching.SQLRelationshipExtractor
 
tableSchemeLength - Variable in class uk.ac.ic.doc.automed.wrappers.SQLWrapperFactory
 
tag() - Method in class uk.ac.bbk.dcs.automed.qproc.iql.Cell
Returns the Cell's tag
targetSchemata - Variable in class uk.ac.bbk.dcs.automed.qproc.reformulate.GAVQueryReformulationProvider
 
tc - Variable in class uk.ac.bbk.dcs.automed.qproc.OldQueryProcessor
 
TCPClient - Class in uk.ac.ic.doc.automed.p2p.communication
 
TCPClient(String, int, RequestListener, int) - Constructor for class uk.ac.ic.doc.automed.p2p.communication.TCPClient
 
TCPClient(RequestListener, int) - Constructor for class uk.ac.ic.doc.automed.p2p.communication.TCPClient
 
TCPServer - Class in uk.ac.ic.doc.automed.p2p.communication
 
TCPServer(int, RequestListener, int, int, int) - Constructor for class uk.ac.ic.doc.automed.p2p.communication.TCPServer
Creates a new instance of UDPServer
TELL - Static variable in class uk.ac.ic.doc.automed.p2p.protocol.P2PConstants
performative
TELL_BROKER - Static variable in class uk.ac.ic.doc.automed.p2p.protocol.P2PConstants
 
TellBrokerQuery - Class in uk.ac.ic.doc.automed.p2p.messages.applicationlayer
 
TellBrokerQuery() - Constructor for class uk.ac.ic.doc.automed.p2p.messages.applicationlayer.TellBrokerQuery
 
TellBrokerQuery(List, List) - Constructor for class uk.ac.ic.doc.automed.p2p.messages.applicationlayer.TellBrokerQuery
 
TellBrokerQuery(AbstractMessage) - Constructor for class uk.ac.ic.doc.automed.p2p.messages.applicationlayer.TellBrokerQuery
 
TempPathway - Class in uk.ac.ic.doc.automed.tml
This class represents a temporary pathway used solely for the purpose of pathway optimisation.
TempQueryProcessor - Class in uk.ac.bbk.dcs.automed.qproc
The new query processor class provides query reformulation for three techniques - GAV, LAV and BAV.
TempQueryProcessor() - Constructor for class uk.ac.bbk.dcs.automed.qproc.TempQueryProcessor
Create an instance of the Query Processor.
TempTML - Class in uk.ac.ic.doc.automed.tml
This class represents a temporary TML in a TempPathway.
terminateMsgProcess(String, String) - Method in class uk.ac.ic.doc.automed.p2p.AutoMedMessagingHelper
Terminate an active messaging process
Test - Class in uk.ac.bbk.dcs.automed.xml.experiments.crime
Class Task Description
Test() - Constructor for class uk.ac.bbk.dcs.automed.xml.experiments.crime.Test
 
test() - Method in class uk.ac.ic.doc.automed.p2p.directory.P2PDirectoryRepository
 
test_AddDate(String, String, long) - Method in class uk.ac.ic.doc.automed.p2p.directory.P2PDirectoryRepository
Test adding date values
test_GetDate() - Method in class uk.ac.ic.doc.automed.p2p.directory.P2PDirectoryRepository
Test getting date
TestDBProcess - Class in uk.ac.ic.doc.automed.tests.p2p
 
TestDBProcess() - Constructor for class uk.ac.ic.doc.automed.tests.p2p.TestDBProcess
 
testIdenticalSchemas(Schema, Schema) - Method in class uk.ac.ic.doc.automed.tml.TempPathway
 
text() - Method in class uk.ac.bbk.dcs.automed.qproc.iql.Cell
Returns the string representation of the object contained in the Cell
Text - Static variable in class uk.ac.bbk.dcs.automed.qproc.iql.EnvSym
 
text - Static variable in class uk.ac.bbk.dcs.automed.xml.XMLConstants
 
text - Variable in class uk.ac.ic.doc.automed.editor.DrawVertex
 
TextEditor - Class in uk.ac.ic.doc.automed.editor
Cell editor class for cache table.
TextEditor() - Constructor for class uk.ac.ic.doc.automed.editor.TextEditor
 
TextEditor(JTable) - Constructor for class uk.ac.ic.doc.automed.editor.TextEditor
 
textHeight - Variable in class uk.ac.ic.doc.automed.editor.DrawVertex
 
textOBID() - Method in class uk.ac.bbk.dcs.automed.qproc.iql.Cell
 
textQuery() - Method in class uk.ac.bbk.dcs.automed.xml.wrappers.DOMWrapper
 
textQuery() - Method in class uk.ac.bbk.dcs.automed.xml.wrappers.NXDBWrapper
 
textQuery() - Method in class uk.ac.bbk.dcs.automed.xml.wrappers.SAXWrapper
 
textQuery() - Method in class uk.ac.bbk.dcs.automed.xml.wrappers.XMLWrapper
 
textWidth - Variable in class uk.ac.ic.doc.automed.editor.DrawVertex
 
tgts - Variable in class uk.ac.bbk.dcs.automed.qproc.OldQueryProcessor
 
THEN - Static variable in interface uk.ac.bbk.dcs.automed.qproc.translators.xquery.XQuery2IQLConstants
 
thePeer - Static variable in class uk.ac.ic.doc.automed.p2p.AutoMedPeer
 
thickness - Static variable in class uk.ac.ic.doc.automed.editor.DrawArc
 
thickness - Static variable in class uk.ac.ic.doc.automed.editor.DrawVertex
 
thickStroke - Static variable in class uk.ac.ic.doc.automed.editor.DrawArc
 
thickStroke - Static variable in class uk.ac.ic.doc.automed.editor.DrawVertex
 
thinStroke - Static variable in class uk.ac.ic.doc.automed.editor.DrawVertex
 
Threadable - Interface in uk.ac.ic.doc.automed.util.thread
 
TIME - Static variable in class uk.ac.ic.doc.automed.wrappers.AutoMedQuery
 
TIME - Static variable in class uk.ac.ic.doc.automed.wrappers.AutoMedType
Type to represent a time (on a particular day)
TIME_TOKEN - Static variable in class uk.ac.ic.doc.automed.wrappers.AutoMedQuery
 
TimedThread - Class in uk.ac.ic.doc.automed.util.thread
 
TimedThread(String, int, long, Threadable, boolean) - Constructor for class uk.ac.ic.doc.automed.util.thread.TimedThread
Creates a new instance of TimedThread
TimedThread(String, long, Threadable, boolean) - Constructor for class uk.ac.ic.doc.automed.util.thread.TimedThread
An overloading constructor for instant running of a thread object
TimedThread(long, Threadable, boolean) - Constructor for class uk.ac.ic.doc.automed.util.thread.TimedThread
An overloading constructor for instant running of a thread object
TimedThread(Threadable, boolean) - Constructor for class uk.ac.ic.doc.automed.util.thread.TimedThread
An overloading constructor for instant running of a thread object
timeOut - Variable in class uk.ac.ic.doc.automed.p2p.communication.AbstractServer
 
timeSpent - Static variable in class uk.ac.bbk.dcs.automed.qproc.functions.collections.Flatmap
 
title(String) - Static method in class uk.ac.bbk.dcs.automed.xml.utilities.PrintUtility
Prints a line of stars, then the input title centered inside a line of stars, then another line of stars.
TML - Class in uk.ac.ic.doc.automed.tml
This class represents a Transformation in TML notation.
TML(Transformation) - Constructor for class uk.ac.ic.doc.automed.tml.TML
 
TML(SchemaObject) - Constructor for class uk.ac.ic.doc.automed.tml.TML
 
TML(TML) - Constructor for class uk.ac.ic.doc.automed.tml.TML
 
TML(int, Schema, Schema, SchemaObject, SchemaObject, String, String) - Constructor for class uk.ac.ic.doc.automed.tml.TML
 
TO_SCHEMA - Static variable in class uk.ac.ic.doc.automed.p2p.protocol.P2PConstants
 
toActionString(int) - Method in class uk.ac.ic.doc.automed.tml.TML
 
toArray() - Method in class uk.ac.ic.doc.automed.editor.autolayout.ExpandedHashMap
 
toArrayOfSpringObjects() - Method in class uk.ac.ic.doc.automed.editor.autolayout.ExpandedHashMap
 
toASG(LinkedList) - Static method in class uk.ac.bbk.dcs.automed.hdmstore.EdgeElement
Convert a LinkedList of edge elements and convert to an ASG
toASG(LinkedList, boolean) - Static method in class uk.ac.bbk.dcs.automed.hdmstore.EdgeElement
Convert a LinkedList of edge elements and convert to an ASG If is true return elements as a list, otherwise as a tuple (so that the ASG returned is a list of tuples)
toASGCollection(ArrayList, String) - Static method in class uk.ac.bbk.dcs.automed.qproc.iql.ASG
Generates an ASG list from an ArrayList.
toASGList(ArrayList) - Static method in class uk.ac.bbk.dcs.automed.qproc.iql.ASG
Generates an ASG list from an ArrayList.
toASGTuple(ArrayList) - Static method in class uk.ac.bbk.dcs.automed.qproc.iql.ASG
Generates an ASG tuple from an ArrayList.
toAutoLayoutERObjectArray() - Method in class uk.ac.ic.doc.automed.editor.autolayout.ExpandedArrayList
 
toAutoLayoutSchemaObjectArray() - Method in class uk.ac.ic.doc.automed.editor.autolayout.ExpandedArrayList
 
ToDateTime - Class in uk.ac.bbk.dcs.automed.qproc.functions.typeConversion
Class Task Description
ToDateTime() - Constructor for class uk.ac.bbk.dcs.automed.qproc.functions.typeConversion.ToDateTime
 
toExtendedString() - Method in class uk.ac.ic.doc.rodex.qproc.QuerySubGoal
Output a String representation of the sub goal with schema name (if any)
ToFloat - Class in uk.ac.bbk.dcs.automed.qproc.functions.typeConversion
Class Task Description
ToFloat() - Constructor for class uk.ac.bbk.dcs.automed.qproc.functions.typeConversion.ToFloat
 
ToInteger - Class in uk.ac.bbk.dcs.automed.qproc.functions.typeConversion
Class Task Description
ToInteger() - Constructor for class uk.ac.bbk.dcs.automed.qproc.functions.typeConversion.ToInteger
 
toIntegerArray(AutoMedType[][]) - Static method in class uk.ac.ic.doc.automed.util.NumberToolkit
Convert a 2-dimensional AutoMedIntegerType array to integer
toInternalString() - Method in class uk.ac.ic.doc.rodex.qproc.QuerySubGoal
Output a String representation of the sub-goal using sub-goal's unique id instead of the scheme name string
toIQLString() - Method in class uk.ac.ic.doc.rodex.qproc.QueryFunction
 
toIQLString() - Method in class uk.ac.ic.doc.rodex.qproc.QuerySubGoal
Output a String representation of the sub goal with schema name (if any) toIQLString() = "{x,y} ->" + toString()
token - Variable in class uk.ac.bbk.dcs.automed.qproc.annotate.grammars.schemes.Schemes
 
Token - Class in uk.ac.bbk.dcs.automed.qproc.annotate.grammars.schemes
Describes the input token stream.
Token() - Constructor for class uk.ac.bbk.dcs.automed.qproc.annotate.grammars.schemes.Token
 
token - Variable in class uk.ac.bbk.dcs.automed.qproc.annotate.grammars.simpleComp.SimpleComp
 
Token - Class in uk.ac.bbk.dcs.automed.qproc.annotate.grammars.simpleComp
Describes the input token stream.
Token() - Constructor for class uk.ac.bbk.dcs.automed.qproc.annotate.grammars.simpleComp.Token
 
token - Variable in class uk.ac.bbk.dcs.automed.qproc.annotate.grammars.simpleCompAppend.SimpleCompAppend
 
Token - Class in uk.ac.bbk.dcs.automed.qproc.annotate.grammars.simpleCompAppend
Describes the input token stream.
Token() - Constructor for class uk.ac.bbk.dcs.automed.qproc.annotate.grammars.simpleCompAppend.Token
 
token - Variable in class uk.ac.bbk.dcs.automed.qproc.annotate.grammars.simpleCompAppendMonus.SimpleCompAppendMonus
 
Token - Class in uk.ac.bbk.dcs.automed.qproc.annotate.grammars.simpleCompAppendMonus
Describes the input token stream.
Token() - Constructor for class uk.ac.bbk.dcs.automed.qproc.annotate.grammars.simpleCompAppendMonus.Token
 
Token - Class in uk.ac.bbk.dcs.automed.qproc.translators.xquery
Describes the input token stream.
Token() - Constructor for class uk.ac.bbk.dcs.automed.qproc.translators.xquery.Token
 
token - Variable in class uk.ac.bbk.dcs.automed.qproc.translators.xquery.XQuery2IQL
 
token_source - Variable in class uk.ac.bbk.dcs.automed.qproc.annotate.grammars.schemes.Schemes
 
token_source - Variable in class uk.ac.bbk.dcs.automed.qproc.annotate.grammars.simpleComp.SimpleComp
 
token_source - Variable in class uk.ac.bbk.dcs.automed.qproc.annotate.grammars.simpleCompAppend.SimpleCompAppend
 
token_source - Variable in class uk.ac.bbk.dcs.automed.qproc.annotate.grammars.simpleCompAppendMonus.SimpleCompAppendMonus
 
token_source - Variable in class uk.ac.bbk.dcs.automed.qproc.translators.xquery.XQuery2IQL
 
tokenImage - Variable in exception uk.ac.bbk.dcs.automed.qproc.annotate.grammars.schemes.ParseException
This is a reference to the "tokenImage" array of the generated parser within which the parse error occurred.
tokenImage - Static variable in interface uk.ac.bbk.dcs.automed.qproc.annotate.grammars.schemes.SchemesConstants
 
tokenImage - Variable in exception uk.ac.bbk.dcs.automed.qproc.annotate.grammars.simpleComp.ParseException
This is a reference to the "tokenImage" array of the generated parser within which the parse error occurred.
tokenImage - Static variable in interface uk.ac.bbk.dcs.automed.qproc.annotate.grammars.simpleComp.SimpleCompConstants
 
tokenImage - Variable in exception uk.ac.bbk.dcs.automed.qproc.annotate.grammars.simpleCompAppend.ParseException
This is a reference to the "tokenImage" array of the generated parser within which the parse error occurred.
tokenImage - Static variable in interface uk.ac.bbk.dcs.automed.qproc.annotate.grammars.simpleCompAppend.SimpleCompAppendConstants
 
tokenImage - Variable in exception uk.ac.bbk.dcs.automed.qproc.annotate.grammars.simpleCompAppendMonus.ParseException
This is a reference to the "tokenImage" array of the generated parser within which the parse error occurred.
tokenImage - Static variable in interface uk.ac.bbk.dcs.automed.qproc.annotate.grammars.simpleCompAppendMonus.SimpleCompAppendMonusConstants
 
tokenImage - Variable in exception uk.ac.bbk.dcs.automed.qproc.translators.xquery.ParseException
This is a reference to the "tokenImage" array of the generated parser within which the parse error occurred.
tokenImage - Static variable in interface uk.ac.bbk.dcs.automed.qproc.translators.xquery.XQuery2IQLConstants
 
tokenize(String) - Static method in class uk.ac.ic.doc.automed.Util
Returns the tokens in s (as defined by default StringTokenizer) as an array
TokenMgrError - Error in uk.ac.bbk.dcs.automed.qproc.annotate.grammars.schemes
 
TokenMgrError() - Constructor for error uk.ac.bbk.dcs.automed.qproc.annotate.grammars.schemes.TokenMgrError
 
TokenMgrError(String, int) - Constructor for error uk.ac.bbk.dcs.automed.qproc.annotate.grammars.schemes.TokenMgrError
 
TokenMgrError(boolean, int, int, int, String, char, int) - Constructor for error uk.ac.bbk.dcs.automed.qproc.annotate.grammars.schemes.TokenMgrError
 
TokenMgrError - Error in uk.ac.bbk.dcs.automed.qproc.annotate.grammars.simpleComp
 
TokenMgrError() - Constructor for error uk.ac.bbk.dcs.automed.qproc.annotate.grammars.simpleComp.TokenMgrError
 
TokenMgrError(String, int) - Constructor for error uk.ac.bbk.dcs.automed.qproc.annotate.grammars.simpleComp.TokenMgrError
 
TokenMgrError(boolean, int, int, int, String, char, int) - Constructor for error uk.ac.bbk.dcs.automed.qproc.annotate.grammars.simpleComp.TokenMgrError
 
TokenMgrError - Error in uk.ac.bbk.dcs.automed.qproc.annotate.grammars.simpleCompAppend
 
TokenMgrError() - Constructor for error uk.ac.bbk.dcs.automed.qproc.annotate.grammars.simpleCompAppend.TokenMgrError
 
TokenMgrError(String, int) - Constructor for error uk.ac.bbk.dcs.automed.qproc.annotate.grammars.simpleCompAppend.TokenMgrError
 
TokenMgrError(boolean, int, int, int, String, char, int) - Constructor for error uk.ac.bbk.dcs.automed.qproc.annotate.grammars.simpleCompAppend.TokenMgrError
 
TokenMgrError - Error in uk.ac.bbk.dcs.automed.qproc.annotate.grammars.simpleCompAppendMonus
 
TokenMgrError() - Constructor for error uk.ac.bbk.dcs.automed.qproc.annotate.grammars.simpleCompAppendMonus.TokenMgrError
 
TokenMgrError(String, int) - Constructor for error uk.ac.bbk.dcs.automed.qproc.annotate.grammars.simpleCompAppendMonus.TokenMgrError
 
TokenMgrError(boolean, int, int, int, String, char, int) - Constructor for error uk.ac.bbk.dcs.automed.qproc.annotate.grammars.simpleCompAppendMonus.TokenMgrError
 
TokenMgrError - Error in uk.ac.bbk.dcs.automed.qproc.translators.xquery
 
TokenMgrError() - Constructor for error uk.ac.bbk.dcs.automed.qproc.translators.xquery.TokenMgrError
 
TokenMgrError(String, int) - Constructor for error uk.ac.bbk.dcs.automed.qproc.translators.xquery.TokenMgrError
 
TokenMgrError(boolean, int, int, int, String, char, int) - Constructor for error uk.ac.bbk.dcs.automed.qproc.translators.xquery.TokenMgrError
 
toLaTeX() - Method in class uk.ac.ic.doc.automed.reps.Pathway
Returns the Pathway in a form that may rendered by the hdm.sty LaTeX package.
toLaTeX() - Method in class uk.ac.ic.doc.automed.reps.SchemaObject
Returns the SchemaObject in a form that may rendered by the hdm.sty LaTeX package.
toLaTeX(Schema) - Method in class uk.ac.ic.doc.automed.reps.Transformation
Returns the transformation in a form that may rendered by the hdm.sty LaTeX package.
toolMenu - Variable in class uk.ac.ic.doc.automed.editor.Gui
 
Tools4DW - Class in uk.ac.bbk.dcs.automed.dataWarehousing.util
 
Tools4DW() - Constructor for class uk.ac.bbk.dcs.automed.dataWarehousing.util.Tools4DW
 
toPrintString() - Method in class uk.ac.ic.doc.automed.tml.TML
 
toSchema - Variable in class uk.ac.ic.doc.automed.p2p.protocol.Request.Pathway
 
toSchemaObjectArray() - Method in class uk.ac.ic.doc.automed.editor.autolayout.ExpandedArrayList
 
toString() - Method in class uk.ac.bbk.dcs.automed.dataWarehousing.dlt.Lineage
 
toString() - Method in class uk.ac.bbk.dcs.automed.qproc.annotate.grammars.schemes.Token
Returns the image.
toString() - Method in class uk.ac.bbk.dcs.automed.qproc.annotate.grammars.simpleComp.Token
Returns the image.
toString() - Method in class uk.ac.bbk.dcs.automed.qproc.annotate.grammars.simpleCompAppend.Token
Returns the image.
toString() - Method in class uk.ac.bbk.dcs.automed.qproc.annotate.grammars.simpleCompAppendMonus.Token
Returns the image.
ToString - Class in uk.ac.bbk.dcs.automed.qproc.functions.typeConversion
Class Task Description
ToString() - Constructor for class uk.ac.bbk.dcs.automed.qproc.functions.typeConversion.ToString
 
toString() - Method in class uk.ac.bbk.dcs.automed.qproc.iql.ASG
 
toString() - Method in class uk.ac.bbk.dcs.automed.qproc.iql.Cell
 
toString() - Method in class uk.ac.bbk.dcs.automed.qproc.iql.SchemeInfo
deprecated use #getSchemeString(boolean) instead
toString() - Method in class uk.ac.bbk.dcs.automed.qproc.reformulate.ViewKey
 
toString() - Method in class uk.ac.bbk.dcs.automed.qproc.translators.xquery.Token
Returns the image.
toString() - Method in class uk.ac.bbk.dcs.automed.xml.xmldssGraph.XMLDSSGraphAttribute
 
toString() - Method in class uk.ac.bbk.dcs.automed.xml.xmldssGraph.XMLDSSGraphElement
 
toString() - Method in class uk.ac.bbk.dcs.automed.xml.xmldssGraph.XMLDSSGraphText
 
toString() - Method in class uk.ac.ic.doc.automed.editor.autolayout.AutoLayout
 
toString() - Method in class uk.ac.ic.doc.automed.editor.Gui.EditorFrame
 
toString() - Method in class uk.ac.ic.doc.automed.matching.BidirectionalDegree
 
toString() - Method in class uk.ac.ic.doc.automed.matching.Instance
 
toString() - Method in class uk.ac.ic.doc.automed.matching.modules.bidirectionalmap.Cluster
 
toString() - Method in class uk.ac.ic.doc.automed.matching.modules.ElementVectorRepresentation
 
toString() - Method in class uk.ac.ic.doc.automed.matching.Range
 
toString() - Method in class uk.ac.ic.doc.automed.matching.relationships.Compatibility
 
toString() - Method in class uk.ac.ic.doc.automed.matching.relationships.Disjointness
 
toString() - Method in class uk.ac.ic.doc.automed.matching.relationships.Equivalence
 
toString() - Method in class uk.ac.ic.doc.automed.matching.relationships.Incompatibility
 
toString() - Method in class uk.ac.ic.doc.automed.matching.relationships.Overlapness
 
toString() - Method in class uk.ac.ic.doc.automed.matching.relationships.SemanticRelationship
 
toString() - Method in class uk.ac.ic.doc.automed.matching.relationships.Subset
 
toString() - Method in class uk.ac.ic.doc.automed.matching.relationships.Superset
 
toString() - Method in class uk.ac.ic.doc.automed.matching.SchemaElement
Returns a string representation of this SchemaElement object.
toString() - Method in class uk.ac.ic.doc.automed.matching.SchemaElementPair
 
toString() - Method in class uk.ac.ic.doc.automed.matching.SchemaElementPairRelationship
 
toString() - Method in class uk.ac.ic.doc.automed.matching.SimilarSchemaElementPair
 
toString() - Method in class uk.ac.ic.doc.automed.matching.UncertainSchemaElementPair
 
toString(Object) - Method in class uk.ac.ic.doc.automed.p2p.directory.ModelDescription
 
toString(Object) - Static method in class uk.ac.ic.doc.automed.p2p.directory.PeerDescription
 
toString(Object) - Method in class uk.ac.ic.doc.automed.p2p.directory.SchemaDescription
 
toString() - Method in class uk.ac.ic.doc.automed.p2p.messages.abstractlayer.AbstractMessage
 
toString() - Method in class uk.ac.ic.doc.automed.p2p.messages.applicationlayer.TellBrokerQuery
 
toString(Object) - Static method in class uk.ac.ic.doc.automed.p2p.PathwayDescription
 
toString() - Method in class uk.ac.ic.doc.automed.p2p.PeerCache
 
toString() - Method in class uk.ac.ic.doc.automed.p2p.protocol.Request
 
toString() - Method in class uk.ac.ic.doc.automed.p2p.tree.AbstractNetwork
 
toString() - Method in class uk.ac.ic.doc.automed.p2p.tree.TreeNode
 
toString() - Method in class uk.ac.ic.doc.automed.reps.Construct
 
toString() - Method in class uk.ac.ic.doc.automed.reps.Model
 
toString() - Method in class uk.ac.ic.doc.automed.reps.Network
 
toString() - Method in class uk.ac.ic.doc.automed.reps.Node
 
toString() - Method in class uk.ac.ic.doc.automed.reps.Pathway
 
toString() - Method in class uk.ac.ic.doc.automed.reps.PersistentKey
 
toString() - Method in class uk.ac.ic.doc.automed.reps.Schema
 
toString() - Method in class uk.ac.ic.doc.automed.reps.SchemaObject
Ensures that instances of this class print in the "correct" AutoMed scheme notation
toString() - Method in class uk.ac.ic.doc.automed.reps.Syntax.Token
 
toString() - Method in class uk.ac.ic.doc.automed.reps.Transformation
 
toString() - Method in class uk.ac.ic.doc.automed.tml.TML
 
toString() - Method in class uk.ac.ic.doc.automed.util.cache.CacheItem
 
toString() - Method in class uk.ac.ic.doc.automed.util.db.DBRecord
Print fields and values
toString() - Method in class uk.ac.ic.doc.automed.util.db.DBRecordWithConstraints
print debug string
toString() - Method in class uk.ac.ic.doc.automed.util.persist.PersistentKey
Output the key's id
toString() - Method in class uk.ac.ic.doc.automed.wrappers.AutoMedBoolean
Return a string representation of this AutoMedBoolean.
toString() - Method in class uk.ac.ic.doc.automed.wrappers.AutoMedFloat
Return a string representation of this AutoMedFloat.
toString() - Method in class uk.ac.ic.doc.automed.wrappers.AutoMedInteger
Return a string representation of this AutoMedInteger.
toString() - Method in class uk.ac.ic.doc.automed.wrappers.AutoMedQueryToken
 
toString() - Method in class uk.ac.ic.doc.automed.wrappers.AutoMedResult
Produce a string representation of the result set, where {} indicates a set of values, and [] a list of values
toString(StringBuffer) - Method in class uk.ac.ic.doc.automed.wrappers.AutoMedResult
Produce a string representation of the result set in a StringBuffer.
toString() - Method in class uk.ac.ic.doc.automed.wrappers.AutoMedString
Return a string representation of this AutoMedString.
toString() - Method in class uk.ac.ic.doc.automed.wrappers.AutoMedTime
Return a string representation of this AutoMedTime using ISO format.
toString(StringBuffer) - Method in class uk.ac.ic.doc.automed.wrappers.AutoMedTuple
Produce a string representation of the result set, where {} indicates a set of values, and [] a list of values
toString() - Method in class uk.ac.ic.doc.automed.wrappers.AutoMedTuple
Produce a string representation of the AutoMedTuple
toString() - Method in class uk.ac.ic.doc.automed.wrappers.AutoMedType
Return a string representation of this AutoMedType.
toString() - Method in class uk.ac.ic.doc.automed.wrappers.SQLQuery
Convert this SQLQuery into a text equivalent.
toString() - Method in class uk.ac.ic.doc.automed.wrappers.xsdomobject.XSDOMObject
 
toString() - Method in class uk.ac.ic.doc.automed.xml.XMLToken
 
toString() - Method in class uk.ac.ic.doc.rodex.qproc.MiniConQueryRewriter.MiniConDescription
Convert MCD's content to string
toString() - Method in class uk.ac.ic.doc.rodex.qproc.QueryFunction
 
toString() - Method in class uk.ac.ic.doc.rodex.qproc.QuerySubGoal
Output a String representation of the sub goal
toString() - Method in class uk.ac.ic.doc.rodex.qproc.QueryVariable
Return a String representation of the query variable
toString() - Method in class uk.ac.ic.doc.rodex.reps.AttributeDomain
 
toStringOBID() - Method in class uk.ac.bbk.dcs.automed.qproc.iql.ASG
Use only for printing purposes in debug settings: works just like ASG.toString(), but schemes has an OBID suffix.
toStringType() - Method in class uk.ac.bbk.dcs.automed.qproc.iql.Cell
 
totalEnd - Variable in class uk.ac.bbk.dcs.automed.qproc.functions.internal.CallToWrapper
 
totalEvaluateCalls - Variable in class uk.ac.bbk.dcs.automed.qproc.evaluate.Evaluator
 
totalStart - Variable in class uk.ac.bbk.dcs.automed.qproc.functions.internal.CallToWrapper
 
totalTimeSpent - Static variable in class uk.ac.bbk.dcs.automed.qproc.functions.internal.CallToWrapper
 
totalWHNFCalls - Variable in class uk.ac.bbk.dcs.automed.qproc.evaluate.Evaluator
 
totalWrapperCalls - Static variable in class uk.ac.bbk.dcs.automed.qproc.functions.internal.CallToWrapper
 
toUnicodeString(String) - Static method in class uk.ac.ic.doc.automed.p2p.util.Util
Get the Unicode representation of a String
TRAN_ACTION_ADD - Static variable in interface uk.ac.ic.doc.automed.Constants
Deprecated. Transformation action "add"
TRAN_ACTION_CONTRACT - Static variable in interface uk.ac.ic.doc.automed.Constants
Deprecated. Transformation action "contract"
TRAN_ACTION_DELETE - Static variable in interface uk.ac.ic.doc.automed.Constants
Deprecated. Transformation action "delete"
TRAN_ACTION_EXTEND - Static variable in interface uk.ac.ic.doc.automed.Constants
Deprecated. Transformation action "extend"
TRAN_ACTION_IDENT - Static variable in interface uk.ac.ic.doc.automed.Constants
Deprecated. Transformation action "ident"
TRAN_ACTION_MAXIMUM - Static variable in interface uk.ac.ic.doc.automed.Constants
Deprecated.  
TRAN_ACTION_MINIMUM - Static variable in interface uk.ac.ic.doc.automed.Constants
Deprecated.  
TRAN_ACTION_RENAME - Static variable in interface uk.ac.ic.doc.automed.Constants
Deprecated. Transformation action "rename"
trans - Variable in class uk.ac.ic.doc.automed.reps.Pathway
 
TransactSQLWrapper - Class in uk.ac.ic.doc.automed.wrappers
A lower level wrapper for the conforming to the AutoMed SQL high level wrapper for TransactSQL SQL databases.
TransactSQLWrapper(AccessMethod, String) - Constructor for class uk.ac.ic.doc.automed.wrappers.TransactSQLWrapper
Generate a new wrapper instance from information held in the repository about how to access a data source.
TransactSQLWrapper() - Constructor for class uk.ac.ic.doc.automed.wrappers.TransactSQLWrapper
 
TransactSQLWrapperFactory - Class in uk.ac.ic.doc.automed.wrappers
A lower level wrapper factory for TransactSQL databases (i.e.
TransactSQLWrapperFactory() - Constructor for class uk.ac.ic.doc.automed.wrappers.TransactSQLWrapperFactory
 
transformation - Static variable in class uk.ac.ic.doc.automed.reps.Syntax.Token
 
Transformation - Class in uk.ac.ic.doc.automed.reps
The Transformation class describes a single premitive transformation that connects a pair of schemas.
Transformation(int, int, int, int, int, String, String, boolean) - Constructor for class uk.ac.ic.doc.automed.reps.Transformation
Instantiates a transformation.
TRANSFORMATION_ADDED - Static variable in class uk.ac.ic.doc.automed.reps.SchemaChangeEvent
 
TRANSFORMATION_REMOVED - Static variable in class uk.ac.ic.doc.automed.reps.SchemaChangeEvent
 
TransformationAbstraction - Class in uk.ac.ic.doc.automed.reps
TransformationAbstraction.java Represents only an abstraction of the transformation
TransformationAbstraction(Transformation) - Constructor for class uk.ac.ic.doc.automed.reps.TransformationAbstraction
Creates a new instance of TransformationAbstraction
TransformationAbstractionBuilder - Class in uk.ac.ic.doc.automed.p2p.tree
 
TransformationAbstractionBuilder(Root) - Constructor for class uk.ac.ic.doc.automed.p2p.tree.TransformationAbstractionBuilder
Creates a new instance of SchemaObjectBuilder
transformationAdded(SchemaChangeEvent) - Method in class uk.ac.ic.doc.automed.editor.Gui.EditorFrame
 
transformationAdded(SchemaChangeEvent) - Method in interface uk.ac.ic.doc.automed.reps.SchemaChangeListener
 
transformationRemoved(SchemaChangeEvent) - Method in class uk.ac.ic.doc.automed.editor.Gui.EditorFrame
 
transformationRemoved(SchemaChangeEvent) - Method in interface uk.ac.ic.doc.automed.reps.SchemaChangeListener
 
TransformationsIssuer - Class in uk.ac.bbk.dcs.automed.xml.relational
This class reads an input XML file that describe two types of transformations:
TransformationsIssuer(String) - Constructor for class uk.ac.bbk.dcs.automed.xml.relational.TransformationsIssuer
 
TransformToHDM(String, int) - Method in class uk.ac.ic.doc.automed.reps.HighLevelToHDM
Transform any high level scehma into an HDM oriented one
TransfStep - Class in uk.ac.bbk.dcs.automed.dataWarehousing.dlt
Write a description of class TransformationStep here.
TransfStep() - Constructor for class uk.ac.bbk.dcs.automed.dataWarehousing.dlt.TransfStep
Constructor for objects of class TransformationStep
TransfStep(String, String, ArrayList, boolean[], String, boolean, boolean) - Constructor for class uk.ac.bbk.dcs.automed.dataWarehousing.dlt.TransfStep
 
TransfStep(Transformation) - Constructor for class uk.ac.bbk.dcs.automed.dataWarehousing.dlt.TransfStep
 
translate(ASG) - Method in class uk.ac.bbk.dcs.automed.wrappers.IQLTranslator
 
translate(Cell) - Method in class uk.ac.bbk.dcs.automed.wrappers.IQLTranslator
 
translate(Cell) - Method in class uk.ac.bbk.dcs.automed.xml.wrappers.IQL2XQuery
 
translate(Document) - Method in class uk.ac.bbk.dcs.automed.xml.wrappers.XMLDSSDOMFromXSD
 
translate(double, double) - Method in class uk.ac.ic.doc.automed.editor.autolayout.DPoint
 
translatePath(LinkedList, String) - Method in class uk.ac.bbk.dcs.automed.qproc.translators.xquery.XQuery2IQL
 
translateResult(ASG) - Method in interface uk.ac.bbk.dcs.automed.qproc.translators.Translator
 
translateResult(ASG) - Method in class uk.ac.bbk.dcs.automed.qproc.translators.xquery.XQuery2IQL
 
translateToQueryText(StringBuffer) - Method in class uk.ac.ic.doc.automed.wrappers.SQLQuery
Insert into a StringBuffer the text equivalent of this SQLQuery.
TranslationException - Exception in uk.ac.bbk.dcs.automed.wrappers
An exception relating to translating IQL to other query languages.
TranslationException(String) - Constructor for exception uk.ac.bbk.dcs.automed.wrappers.TranslationException
 
TranslationException(String, Exception) - Constructor for exception uk.ac.bbk.dcs.automed.wrappers.TranslationException
Creates an TranslationException when it is acting as a wrapper for other Exceptions.
Translator - Interface in uk.ac.bbk.dcs.automed.qproc.translators
Interface for translators of high-level query languages for use on top of IQL.
Translator - Class in uk.ac.bbk.dcs.automed.wrappers
 
Translator() - Constructor for class uk.ac.bbk.dcs.automed.wrappers.Translator
 
transStatus - Variable in class uk.ac.ic.doc.automed.reps.Pathway
 
tree - Variable in class uk.ac.ic.doc.automed.editor.PatternWritingTool.DynamicTree
 
tree - Variable in class uk.ac.ic.doc.automed.p2p.tree.ObjectBuilder
 
TREE_PATH_FLAVOR - Static variable in class uk.ac.ic.doc.automed.xmlschema.tree.TreeDropTarget
 
TreeBuilder - Class in uk.ac.ic.doc.automed.p2p.tree
 
TreeBuilder(Element) - Constructor for class uk.ac.ic.doc.automed.p2p.tree.TreeBuilder
 
TreeBuilder(Document) - Constructor for class uk.ac.ic.doc.automed.p2p.tree.TreeBuilder
 
TreeDragSource - Class in uk.ac.ic.doc.automed.xmlschema.tree
 
TreeDragSource(JTree, int) - Constructor for class uk.ac.ic.doc.automed.xmlschema.tree.TreeDragSource
 
TreeDropTarget - Class in uk.ac.ic.doc.automed.xmlschema.tree
 
TreeDropTarget(JTree, JTextArea, XMLSchemaEditor) - Constructor for class uk.ac.ic.doc.automed.xmlschema.tree.TreeDropTarget
 
treeModel - Variable in class uk.ac.ic.doc.automed.editor.PatternWritingTool.DynamicTree
 
TreeNode - Class in uk.ac.bbk.dcs.automed.graph
Class that abstracts the node of a tree structure.
TreeNode(String) - Constructor for class uk.ac.bbk.dcs.automed.graph.TreeNode
 
TreeNode - Class in uk.ac.ic.doc.automed.p2p.tree
 
TreeNode(Object) - Constructor for class uk.ac.ic.doc.automed.p2p.tree.TreeNode
 
TUPLE - Static variable in class uk.ac.ic.doc.automed.wrappers.AutoMedType
Type to represent a tuple of atomic types
tx - Variable in class uk.ac.ic.doc.automed.editor.DefaultDrawLinkNodalVertex
 
ty - Variable in class uk.ac.ic.doc.automed.editor.DefaultDrawLinkNodalVertex
 
TYP_CACHE - Static variable in class uk.ac.ic.doc.automed.reps.DataSource
 
TYP_SOURCE - Static variable in class uk.ac.ic.doc.automed.reps.DataSource
 
type() - Method in class uk.ac.bbk.dcs.automed.hdmstore.Edge
Get the edge type
type() - Method in class uk.ac.bbk.dcs.automed.hdmstore.Span
Get the type
type() - Method in class uk.ac.bbk.dcs.automed.qproc.annotate.grammars.schemes.Schemes
 
type() - Method in class uk.ac.bbk.dcs.automed.qproc.annotate.grammars.simpleComp.SimpleComp
 
type() - Method in class uk.ac.bbk.dcs.automed.qproc.annotate.grammars.simpleCompAppend.SimpleCompAppend
 
type() - Method in class uk.ac.bbk.dcs.automed.qproc.annotate.grammars.simpleCompAppendMonus.SimpleCompAppendMonus
 
TYPE - Static variable in class uk.ac.ic.doc.automed.p2p.protocol.P2PConstants
 
type - Variable in class uk.ac.ic.doc.automed.reps.Syntax.Token
 
type - Variable in class uk.ac.ic.doc.automed.wrappers.xsdomobject.XSDOMObject
The type of the object.
type - Variable in class uk.ac.ic.doc.automed.xml.XMLToken
 
TYPE_ALTERNATION - Static variable in class uk.ac.ic.doc.automed.reps.Scheme
Deprecated. see Construct.CLASS_ALTERNATION
TYPE_APPLY - Static variable in class uk.ac.ic.doc.rodex.qproc.ASGExplore
 
TYPE_BUCKET - Static variable in class uk.ac.ic.doc.rodex.qproc.QueryRewriteProcessor
 
TYPE_CONS_CONSTRUCTOR - Static variable in class uk.ac.ic.doc.rodex.qproc.ASGExplore
 
TYPE_CONSTANT - Static variable in class uk.ac.ic.doc.rodex.qproc.ASGExplore
 
TYPE_CONSTRUCT - Static variable in class uk.ac.ic.doc.automed.reps.Scheme
Scheme type of construct scheme
TYPE_CONSTRUCTOR - Static variable in class uk.ac.ic.doc.rodex.qproc.ASGExplore
 
TYPE_EXTRA - Static variable in class uk.ac.ic.doc.rodex.p2p.messages.applicationlayer.SchemaAccessibility
 
TYPE_INTRA - Static variable in class uk.ac.ic.doc.rodex.p2p.messages.applicationlayer.SchemaAccessibility
 
TYPE_INVERSE_RULE - Static variable in class uk.ac.ic.doc.rodex.qproc.QueryRewriteProcessor
 
TYPE_MAXIMUM - Static variable in class uk.ac.ic.doc.automed.reps.Scheme
 
TYPE_MINICON - Static variable in class uk.ac.ic.doc.rodex.qproc.QueryRewriteProcessor
 
TYPE_MINICON_ADAPTIVE - Static variable in class uk.ac.ic.doc.rodex.qproc.QueryRewriteProcessor
 
TYPE_MINICON_DISTRIBUTED - Static variable in class uk.ac.ic.doc.rodex.qproc.QueryRewriteProcessor
 
TYPE_MINICON_NONCONJUNCTIVE - Static variable in class uk.ac.ic.doc.rodex.qproc.QueryRewriteProcessor
 
TYPE_MINIMUM - Static variable in class uk.ac.ic.doc.automed.reps.Scheme
 
TYPE_NAME - Static variable in class uk.ac.ic.doc.automed.reps.Scheme
Scheme type of construct scheme
TYPE_RANGE_BASED - Static variable in class uk.ac.ic.doc.rodex.qproc.QueryRewriteProcessor
 
TYPE_SCHEME - Static variable in class uk.ac.ic.doc.rodex.qproc.ASGExplore
 
TYPE_SEQUENCE - Static variable in class uk.ac.ic.doc.automed.reps.Scheme
Deprecated. see Construct.CLASS_SEQUENCE
typeCheck(ASG) - Method in class uk.ac.bbk.dcs.automed.qproc.iql.TypeChecker
 
typeCheck(ASG) - Method in class uk.ac.bbk.dcs.automed.qproc.OldQueryProcessor
 
TypeChecker - Class in uk.ac.bbk.dcs.automed.qproc.iql
 
TypeChecker() - Constructor for class uk.ac.bbk.dcs.automed.qproc.iql.TypeChecker
 
TypeConstants - Class in uk.ac.bbk.dcs.automed.qproc.iql
 
TypeConstants() - Constructor for class uk.ac.bbk.dcs.automed.qproc.iql.TypeConstants
 
TypeConversionFunctionTable - Class in uk.ac.bbk.dcs.automed.qproc.functions.typeConversion
Class Task Description
TypeConversionFunctionTable() - Constructor for class uk.ac.bbk.dcs.automed.qproc.functions.typeConversion.TypeConversionFunctionTable
 
TypeException - Exception in uk.ac.bbk.dcs.automed.qproc.iql
Class Task Description
TypeException(String) - Constructor for exception uk.ac.bbk.dcs.automed.qproc.iql.TypeException
 
TypeException(String, Exception) - Constructor for exception uk.ac.bbk.dcs.automed.qproc.iql.TypeException
Creates a TypeException when it is acting as a wrapper for other Exceptions.
typeExists(String) - Method in class uk.ac.ic.doc.automed.reps.TypeHierarchy
Check whether @param typeName exists
TypeHierarchy - Class in uk.ac.ic.doc.automed.reps
 
TypeHierarchy(int) - Constructor for class uk.ac.ic.doc.automed.reps.TypeHierarchy
Creates a new instance of typeHierarchy for serialisation
TypeHierarchy.TypeObject - Class in uk.ac.ic.doc.automed.reps
The type object class This class stored information about type objects in a type hierarchy Using the notation in the technical reports on types: hdmEquiv is =, parentName is <
TypeHierarchy.TypeObject(int, int, String, int, int, String, String) - Constructor for class uk.ac.ic.doc.automed.reps.TypeHierarchy.TypeObject
Construcutor for a new TypeObject
typeList - Variable in class uk.ac.bbk.dcs.automed.qproc.functions.BuiltInFunction
 
TypeMismatchException - Exception in uk.ac.ic.doc.automed.reps
The class of exceptions generated by the uk.ac.ic.doc.automed.reps package.
TypeMismatchException(String) - Constructor for exception uk.ac.ic.doc.automed.reps.TypeMismatchException
 

U

UDPClient - Class in uk.ac.ic.doc.automed.p2p.communication
 
UDPClient(String, int, RequestListener, byte[]) - Constructor for class uk.ac.ic.doc.automed.p2p.communication.UDPClient
Creates a new instance of UDPClient
UDPClient(RequestListener) - Constructor for class uk.ac.ic.doc.automed.p2p.communication.UDPClient
 
UDPClient(String, int, RequestListener) - Constructor for class uk.ac.ic.doc.automed.p2p.communication.UDPClient
Creates a new instance of UDPClient
UDPOutOfSyncException - Exception in uk.ac.ic.doc.automed.p2p.communication
 
UDPOutOfSyncException() - Constructor for exception uk.ac.ic.doc.automed.p2p.communication.UDPOutOfSyncException
 
UDPOutOfSyncException(String) - Constructor for exception uk.ac.ic.doc.automed.p2p.communication.UDPOutOfSyncException
 
UDPOutOfSyncException(Throwable) - Constructor for exception uk.ac.ic.doc.automed.p2p.communication.UDPOutOfSyncException
 
UDPOutOfSyncException(String, Throwable) - Constructor for exception uk.ac.ic.doc.automed.p2p.communication.UDPOutOfSyncException
 
UDPServer - Class in uk.ac.ic.doc.automed.p2p.communication
 
UDPServer(int, RequestListener, int, int, int) - Constructor for class uk.ac.ic.doc.automed.p2p.communication.UDPServer
Creates a new instance of UDPServer
UIDUtility - Class in uk.ac.bbk.dcs.automed.xml.utilities
This class contains various methods related to the XML unique identifiers (UIDs) used in the AutoMed XML toolkit
UIDUtility() - Constructor for class uk.ac.bbk.dcs.automed.xml.utilities.UIDUtility
 
uk - package uk
 
uk.ac - package uk.ac
 
uk.ac.bbk - package uk.ac.bbk
 
uk.ac.bbk.dcs - package uk.ac.bbk.dcs
 
uk.ac.bbk.dcs.automed - package uk.ac.bbk.dcs.automed
 
uk.ac.bbk.dcs.automed.dataWarehousing - package uk.ac.bbk.dcs.automed.dataWarehousing
 
uk.ac.bbk.dcs.automed.dataWarehousing.dlt - package uk.ac.bbk.dcs.automed.dataWarehousing.dlt
 
uk.ac.bbk.dcs.automed.dataWarehousing.util - package uk.ac.bbk.dcs.automed.dataWarehousing.util
 
uk.ac.bbk.dcs.automed.evolution - package uk.ac.bbk.dcs.automed.evolution
 
uk.ac.bbk.dcs.automed.evolution.dataEvolution - package uk.ac.bbk.dcs.automed.evolution.dataEvolution
 
uk.ac.bbk.dcs.automed.evolution.schemaModelEvolution - package uk.ac.bbk.dcs.automed.evolution.schemaModelEvolution
 
uk.ac.bbk.dcs.automed.evolution1 - package uk.ac.bbk.dcs.automed.evolution1
 
uk.ac.bbk.dcs.automed.evolution2 - package uk.ac.bbk.dcs.automed.evolution2
 
uk.ac.bbk.dcs.automed.evolution2.dataEvolution - package uk.ac.bbk.dcs.automed.evolution2.dataEvolution
 
uk.ac.bbk.dcs.automed.evolution2.modelEvolution - package uk.ac.bbk.dcs.automed.evolution2.modelEvolution
 
uk.ac.bbk.dcs.automed.evolution2.schemaEvolution - package uk.ac.bbk.dcs.automed.evolution2.schemaEvolution
 
uk.ac.bbk.dcs.automed.graph - package uk.ac.bbk.dcs.automed.graph
 
uk.ac.bbk.dcs.automed.hdmstore - package uk.ac.bbk.dcs.automed.hdmstore
 
uk.ac.bbk.dcs.automed.qproc - package uk.ac.bbk.dcs.automed.qproc
 
uk.ac.bbk.dcs.automed.qproc.annotate - package uk.ac.bbk.dcs.automed.qproc.annotate
 
uk.ac.bbk.dcs.automed.qproc.annotate.grammars - package uk.ac.bbk.dcs.automed.qproc.annotate.grammars
 
uk.ac.bbk.dcs.automed.qproc.annotate.grammars.schemes - package uk.ac.bbk.dcs.automed.qproc.annotate.grammars.schemes
 
uk.ac.bbk.dcs.automed.qproc.annotate.grammars.simpleComp - package uk.ac.bbk.dcs.automed.qproc.annotate.grammars.simpleComp
 
uk.ac.bbk.dcs.automed.qproc.annotate.grammars.simpleCompAppend - package uk.ac.bbk.dcs.automed.qproc.annotate.grammars.simpleCompAppend
 
uk.ac.bbk.dcs.automed.qproc.annotate.grammars.simpleCompAppendMonus - package uk.ac.bbk.dcs.automed.qproc.annotate.grammars.simpleCompAppendMonus
 
uk.ac.bbk.dcs.automed.qproc.evaluate - package uk.ac.bbk.dcs.automed.qproc.evaluate
 
uk.ac.bbk.dcs.automed.qproc.functions - package uk.ac.bbk.dcs.automed.qproc.functions
 
uk.ac.bbk.dcs.automed.qproc.functions.arithmetic - package uk.ac.bbk.dcs.automed.qproc.functions.arithmetic
 
uk.ac.bbk.dcs.automed.qproc.functions.collections - package uk.ac.bbk.dcs.automed.qproc.functions.collections
 
uk.ac.bbk.dcs.automed.qproc.functions.comparison - package uk.ac.bbk.dcs.automed.qproc.functions.comparison
 
uk.ac.bbk.dcs.automed.qproc.functions.date - package uk.ac.bbk.dcs.automed.qproc.functions.date
 
uk.ac.bbk.dcs.automed.qproc.functions.internal - package uk.ac.bbk.dcs.automed.qproc.functions.internal
 
uk.ac.bbk.dcs.automed.qproc.functions.logical - package uk.ac.bbk.dcs.automed.qproc.functions.logical
 
uk.ac.bbk.dcs.automed.qproc.functions.string - package uk.ac.bbk.dcs.automed.qproc.functions.string
 
uk.ac.bbk.dcs.automed.qproc.functions.typeConversion - package uk.ac.bbk.dcs.automed.qproc.functions.typeConversion
 
uk.ac.bbk.dcs.automed.qproc.iql - package uk.ac.bbk.dcs.automed.qproc.iql
 
uk.ac.bbk.dcs.automed.qproc.optimise - package uk.ac.bbk.dcs.automed.qproc.optimise
 
uk.ac.bbk.dcs.automed.qproc.optimise.optimisers - package uk.ac.bbk.dcs.automed.qproc.optimise.optimisers
 
uk.ac.bbk.dcs.automed.qproc.reformulate - package uk.ac.bbk.dcs.automed.qproc.reformulate
 
uk.ac.bbk.dcs.automed.qproc.translators - package uk.ac.bbk.dcs.automed.qproc.translators
 
uk.ac.bbk.dcs.automed.qproc.translators.xquery - package uk.ac.bbk.dcs.automed.qproc.translators.xquery
 
uk.ac.bbk.dcs.automed.rdfs - package uk.ac.bbk.dcs.automed.rdfs
 
uk.ac.bbk.dcs.automed.wrappers - package uk.ac.bbk.dcs.automed.wrappers
 
uk.ac.bbk.dcs.automed.xml - package uk.ac.bbk.dcs.automed.xml
 
uk.ac.bbk.dcs.automed.xml.experiments - package uk.ac.bbk.dcs.automed.xml.experiments
 
uk.ac.bbk.dcs.automed.xml.experiments.crime - package uk.ac.bbk.dcs.automed.xml.experiments.crime
 
uk.ac.bbk.dcs.automed.xml.experiments.other - package uk.ac.bbk.dcs.automed.xml.experiments.other
 
uk.ac.bbk.dcs.automed.xml.experiments.other.set0 - package uk.ac.bbk.dcs.automed.xml.experiments.other.set0
 
uk.ac.bbk.dcs.automed.xml.experiments.other.set1 - package uk.ac.bbk.dcs.automed.xml.experiments.other.set1
 
uk.ac.bbk.dcs.automed.xml.experiments.other.set2 - package uk.ac.bbk.dcs.automed.xml.experiments.other.set2
 
uk.ac.bbk.dcs.automed.xml.experiments.other.set3 - package uk.ac.bbk.dcs.automed.xml.experiments.other.set3
 
uk.ac.bbk.dcs.automed.xml.experiments.skolem - package uk.ac.bbk.dcs.automed.xml.experiments.skolem
 
uk.ac.bbk.dcs.automed.xml.experiments.subclass - package uk.ac.bbk.dcs.automed.xml.experiments.subclass
 
uk.ac.bbk.dcs.automed.xml.experiments.subclass.set1 - package uk.ac.bbk.dcs.automed.xml.experiments.subclass.set1
 
uk.ac.bbk.dcs.automed.xml.experiments.subclassANDskolem - package uk.ac.bbk.dcs.automed.xml.experiments.subclassANDskolem
 
uk.ac.bbk.dcs.automed.xml.experiments.thesis - package uk.ac.bbk.dcs.automed.xml.experiments.thesis
 
uk.ac.bbk.dcs.automed.xml.experiments.ws - package uk.ac.bbk.dcs.automed.xml.experiments.ws
 
uk.ac.bbk.dcs.automed.xml.functions - package uk.ac.bbk.dcs.automed.xml.functions
 
uk.ac.bbk.dcs.automed.xml.materialisation - package uk.ac.bbk.dcs.automed.xml.materialisation
 
uk.ac.bbk.dcs.automed.xml.relational - package uk.ac.bbk.dcs.automed.xml.relational
 
uk.ac.bbk.dcs.automed.xml.utilities - package uk.ac.bbk.dcs.automed.xml.utilities
 
uk.ac.bbk.dcs.automed.xml.wrappers - package uk.ac.bbk.dcs.automed.xml.wrappers
 
uk.ac.bbk.dcs.automed.xml.xmldssGraph - package uk.ac.bbk.dcs.automed.xml.xmldssGraph
 
uk.ac.ic - package uk.ac.ic
 
uk.ac.ic.doc - package uk.ac.ic.doc
 
uk.ac.ic.doc.automed - package uk.ac.ic.doc.automed
 
uk.ac.ic.doc.automed.editor - package uk.ac.ic.doc.automed.editor
 
uk.ac.ic.doc.automed.editor.autolayout - package uk.ac.ic.doc.automed.editor.autolayout
 
uk.ac.ic.doc.automed.editor.drawables - package uk.ac.ic.doc.automed.editor.drawables
 
uk.ac.ic.doc.automed.editor.layout - package uk.ac.ic.doc.automed.editor.layout
 
uk.ac.ic.doc.automed.matching - package uk.ac.ic.doc.automed.matching
 
uk.ac.ic.doc.automed.matching.modules - package uk.ac.ic.doc.automed.matching.modules
 
uk.ac.ic.doc.automed.matching.modules.bidirectionalmap - package uk.ac.ic.doc.automed.matching.modules.bidirectionalmap
 
uk.ac.ic.doc.automed.matching.modules.intervals - package uk.ac.ic.doc.automed.matching.modules.intervals
 
uk.ac.ic.doc.automed.matching.modules.probability - package uk.ac.ic.doc.automed.matching.modules.probability
 
uk.ac.ic.doc.automed.matching.modules.probability.binary - package uk.ac.ic.doc.automed.matching.modules.probability.binary
 
uk.ac.ic.doc.automed.matching.modules.probability.senary - package uk.ac.ic.doc.automed.matching.modules.probability.senary
 
uk.ac.ic.doc.automed.matching.relationships - package uk.ac.ic.doc.automed.matching.relationships
 
uk.ac.ic.doc.automed.p2p - package uk.ac.ic.doc.automed.p2p
 
uk.ac.ic.doc.automed.p2p.communication - package uk.ac.ic.doc.automed.p2p.communication
 
uk.ac.ic.doc.automed.p2p.directory - package uk.ac.ic.doc.automed.p2p.directory
 
uk.ac.ic.doc.automed.p2p.gui - package uk.ac.ic.doc.automed.p2p.gui
 
uk.ac.ic.doc.automed.p2p.messages - package uk.ac.ic.doc.automed.p2p.messages
 
uk.ac.ic.doc.automed.p2p.messages.abstractlayer - package uk.ac.ic.doc.automed.p2p.messages.abstractlayer
 
uk.ac.ic.doc.automed.p2p.messages.applicationlayer - package uk.ac.ic.doc.automed.p2p.messages.applicationlayer
 
uk.ac.ic.doc.automed.p2p.overlay - package uk.ac.ic.doc.automed.p2p.overlay
 
uk.ac.ic.doc.automed.p2p.protocol - package uk.ac.ic.doc.automed.p2p.protocol
 
uk.ac.ic.doc.automed.p2p.state - package uk.ac.ic.doc.automed.p2p.state
 
uk.ac.ic.doc.automed.p2p.tree - package uk.ac.ic.doc.automed.p2p.tree
 
uk.ac.ic.doc.automed.p2p.util - package uk.ac.ic.doc.automed.p2p.util
 
uk.ac.ic.doc.automed.qproc - package uk.ac.ic.doc.automed.qproc
 
uk.ac.ic.doc.automed.qproc.cache - package uk.ac.ic.doc.automed.qproc.cache
 
uk.ac.ic.doc.automed.qproc.eval - package uk.ac.ic.doc.automed.qproc.eval
 
uk.ac.ic.doc.automed.qproc.functions - package uk.ac.ic.doc.automed.qproc.functions
 
uk.ac.ic.doc.automed.qproc.functions.internal - package uk.ac.ic.doc.automed.qproc.functions.internal
 
uk.ac.ic.doc.automed.qproc.opti - package uk.ac.ic.doc.automed.qproc.opti
 
uk.ac.ic.doc.automed.qproc.refo - package uk.ac.ic.doc.automed.qproc.refo
 
uk.ac.ic.doc.automed.reps - package uk.ac.ic.doc.automed.reps
 
uk.ac.ic.doc.automed.reps.pathway - package uk.ac.ic.doc.automed.reps.pathway
 
uk.ac.ic.doc.automed.ssd - package uk.ac.ic.doc.automed.ssd
 
uk.ac.ic.doc.automed.tests - package uk.ac.ic.doc.automed.tests
 
uk.ac.ic.doc.automed.tests.p2p - package uk.ac.ic.doc.automed.tests.p2p
 
uk.ac.ic.doc.automed.tml - package uk.ac.ic.doc.automed.tml
 
uk.ac.ic.doc.automed.util - package uk.ac.ic.doc.automed.util
 
uk.ac.ic.doc.automed.util.cache - package uk.ac.ic.doc.automed.util.cache
 
uk.ac.ic.doc.automed.util.db - package uk.ac.ic.doc.automed.util.db
 
uk.ac.ic.doc.automed.util.hashing - package uk.ac.ic.doc.automed.util.hashing
 
uk.ac.ic.doc.automed.util.persist - package uk.ac.ic.doc.automed.util.persist
 
uk.ac.ic.doc.automed.util.queue - package uk.ac.ic.doc.automed.util.queue
 
uk.ac.ic.doc.automed.util.thread - package uk.ac.ic.doc.automed.util.thread
 
uk.ac.ic.doc.automed.wrappers - package uk.ac.ic.doc.automed.wrappers
 
uk.ac.ic.doc.automed.wrappers.ssdfunctions - package uk.ac.ic.doc.automed.wrappers.ssdfunctions
 
uk.ac.ic.doc.automed.wrappers.xsdomobject - package uk.ac.ic.doc.automed.wrappers.xsdomobject
 
uk.ac.ic.doc.automed.xml - package uk.ac.ic.doc.automed.xml
 
uk.ac.ic.doc.automed.xmlschema - package uk.ac.ic.doc.automed.xmlschema
 
uk.ac.ic.doc.automed.xmlschema.output - package uk.ac.ic.doc.automed.xmlschema.output
 
uk.ac.ic.doc.automed.xmlschema.tree - package uk.ac.ic.doc.automed.xmlschema.tree
 
uk.ac.ic.doc.rodex - package uk.ac.ic.doc.rodex
 
uk.ac.ic.doc.rodex.p2p - package uk.ac.ic.doc.rodex.p2p
 
uk.ac.ic.doc.rodex.p2p.gui - package uk.ac.ic.doc.rodex.p2p.gui
 
uk.ac.ic.doc.rodex.p2p.messages - package uk.ac.ic.doc.rodex.p2p.messages
 
uk.ac.ic.doc.rodex.p2p.messages.applicationlayer - package uk.ac.ic.doc.rodex.p2p.messages.applicationlayer
 
uk.ac.ic.doc.rodex.p2p.protocol - package uk.ac.ic.doc.rodex.p2p.protocol
 
uk.ac.ic.doc.rodex.qproc - package uk.ac.ic.doc.rodex.qproc
 
uk.ac.ic.doc.rodex.reps - package uk.ac.ic.doc.rodex.reps
 
UML_COLOUR - Static variable in class uk.ac.ic.doc.automed.wrappers.UMLWrapperFactory
 
UML_MODEL_ASSOCIATION - Static variable in class uk.ac.ic.doc.automed.wrappers.UMLWrapperFactory
 
UML_MODEL_ATTRIBUTE - Static variable in class uk.ac.ic.doc.automed.wrappers.UMLWrapperFactory
 
UML_MODEL_CLASS - Static variable in class uk.ac.ic.doc.automed.wrappers.UMLWrapperFactory
 
UML_MODEL_GENERALISATION - Static variable in class uk.ac.ic.doc.automed.wrappers.UMLWrapperFactory
 
UML_MODEL_NAME - Static variable in class uk.ac.ic.doc.automed.wrappers.UMLWrapperFactory
Constants
UML_MODEL_PREFIX - Static variable in class uk.ac.ic.doc.automed.wrappers.UMLWrapperFactory
 
UMLWrapper - Class in uk.ac.ic.doc.automed.wrappers
 
UMLWrapper() - Constructor for class uk.ac.ic.doc.automed.wrappers.UMLWrapper
Creates a new, empty instance of UMLWrapper
UMLWrapper(AccessMethod, String) - Constructor for class uk.ac.ic.doc.automed.wrappers.UMLWrapper
This constructor is used when querying the schema
UMLWrapperFactory - Class in uk.ac.ic.doc.automed.wrappers
 
UMLWrapperFactory() - Constructor for class uk.ac.ic.doc.automed.wrappers.UMLWrapperFactory
Creates a new instance of UMLWrapperFactory
uMRedirection(Gui, Object[]) - Static method in class uk.ac.ic.doc.automed.editor.Gui
Performs a unique mandatory redirection
uMRedirection(SchemaObject, SchemaObject) - Method in class uk.ac.ic.doc.automed.reps.HDMTransformations
Unique Mandatory redirection
UNARY_CLASS - Static variable in class uk.ac.ic.doc.automed.wrappers.AutoMedQuery
 
UncertainSchemaElementPair - Class in uk.ac.ic.doc.automed.matching
The class representing a pair of schema elements and its uncertain semantic relationship.
UncertainSchemaElementPair(SchemaElement, SchemaElement, MassPotential) - Constructor for class uk.ac.ic.doc.automed.matching.UncertainSchemaElementPair
Constructs a UncertainSchemaElementPair object.
UncertainSchemaElementPair(SchemaElementPair, MassPotential) - Constructor for class uk.ac.ic.doc.automed.matching.UncertainSchemaElementPair
Constructs a UncertainSchemaElementPair object.
UnderScore - Static variable in class uk.ac.bbk.dcs.automed.qproc.iql.QSym
 
UnexpectedTokenException - Exception in uk.ac.ic.doc.automed.editor
 
UnexpectedTokenException(int, int, Syntax.Token) - Constructor for exception uk.ac.ic.doc.automed.editor.UnexpectedTokenException
 
UnexpectedTokenException(int, int, int, Syntax.Token) - Constructor for exception uk.ac.ic.doc.automed.editor.UnexpectedTokenException
 
UnexpectedTokenException - Exception in uk.ac.ic.doc.automed.reps
Deprecated. Use SyntaxException instead
UnexpectedTokenException(String) - Constructor for exception uk.ac.ic.doc.automed.reps.UnexpectedTokenException
Deprecated.  
UnexpectedTokenException(int, int, Syntax.Token) - Constructor for exception uk.ac.ic.doc.automed.reps.UnexpectedTokenException
Deprecated.  
UnexpectedTokenException(int, int, int, Syntax.Token) - Constructor for exception uk.ac.ic.doc.automed.reps.UnexpectedTokenException
Deprecated.  
unify() - Method in class uk.ac.bbk.dcs.automed.qproc.iql.ASG
 
UninstantiatedElementException - Exception in uk.ac.ic.doc.automed.matching
 
UninstantiatedElementException(String) - Constructor for exception uk.ac.ic.doc.automed.matching.UninstantiatedElementException
 
UninstantiatedElementException() - Constructor for exception uk.ac.ic.doc.automed.matching.UninstantiatedElementException
 
UninstantiatedException - Exception in uk.ac.ic.doc.automed.matching
 
UninstantiatedException(String) - Constructor for exception uk.ac.ic.doc.automed.matching.UninstantiatedException
 
UninstantiatedException() - Constructor for exception uk.ac.ic.doc.automed.matching.UninstantiatedException
 
UninstantiatedException(String, Throwable) - Constructor for exception uk.ac.ic.doc.automed.matching.UninstantiatedException
 
Union - Class in uk.ac.bbk.dcs.automed.qproc.functions.collections
 
Union() - Constructor for class uk.ac.bbk.dcs.automed.qproc.functions.collections.Union
 
union(Schema) - Method in class uk.ac.ic.doc.automed.reps.Schema
Return an Schema (su) containing the union of SchemaObjects in this schema (s1) and the schema passed as a parameter (s2).
UNION - Static variable in class uk.ac.ic.doc.automed.wrappers.SQLQuery
SQL UNION binary operator
unionByName(Schema) - Method in class uk.ac.ic.doc.automed.reps.Schema
Return an SchemaObject array containing the union by name between this schema (s1) and the schema passed as a parameter (s2).
unlockAllObjects() - Static method in class uk.ac.ic.doc.automed.editor.autolayout.AutoLayoutERObject
 
UnnestOptimiser - Class in uk.ac.bbk.dcs.automed.qproc.optimise.optimisers
Unnests comprehensions.
UnnestOptimiser() - Constructor for class uk.ac.bbk.dcs.automed.qproc.optimise.optimisers.UnnestOptimiser
 
UNPARSED_ENTITY_DECL - Static variable in interface uk.ac.ic.doc.automed.xml.XMLifyConstants
 
unparsedEntityDecl(String, String, String, String) - Method in class uk.ac.ic.doc.automed.xml.XMLReader
 
unregister() - Method in class uk.ac.ic.doc.automed.p2p.AutoMedPeer
Notify directory server that this peer is logged out
UNREGISTER_PEER - Static variable in class uk.ac.ic.doc.automed.p2p.protocol.P2PConstants
Context: un-registering peer
UnregisterPeerMessageHandler - Class in uk.ac.ic.doc.automed.p2p
 
UnregisterPeerMessageHandler(AutoMedPeer) - Constructor for class uk.ac.ic.doc.automed.p2p.UnregisterPeerMessageHandler
Creates a new instance of KeepAliveMessageHandler
UnsuccessfulReplyException - Exception in uk.ac.ic.doc.automed.p2p
 
UnsuccessfulReplyException() - Constructor for exception uk.ac.ic.doc.automed.p2p.UnsuccessfulReplyException
 
UnsuccessfulReplyException(String, String) - Constructor for exception uk.ac.ic.doc.automed.p2p.UnsuccessfulReplyException
 
UnsuccessfulReplyException(AbstractMessage) - Constructor for exception uk.ac.ic.doc.automed.p2p.UnsuccessfulReplyException
 
UnsuccessfulReplyException(String, Throwable) - Constructor for exception uk.ac.ic.doc.automed.p2p.UnsuccessfulReplyException
 
unvisit() - Method in class uk.ac.bbk.dcs.automed.graph.DirectedGraphNode
Marks the calling node as unvisited
UPDATE - Static variable in exception uk.ac.ic.doc.automed.IntegrityException
Exception caused by an operation doing some sort of update on an exisinting object in the repository.
UPDATE_DATA - Static variable in class uk.ac.ic.doc.automed.p2p.protocol.P2PConstants
Context: update peer data
updateCache(String, ASG, ASG) - Method in class uk.ac.ic.doc.automed.wrappers.AutoMedWrapper
Update query cache as queries are executed over the data source.
UpdateDataMessageHandler - Class in uk.ac.ic.doc.automed.p2p
 
UpdateDataMessageHandler(AutoMedPeer) - Constructor for class uk.ac.ic.doc.automed.p2p.UpdateDataMessageHandler
Creates a new instance of UpdateDataMessageHandler
updateFields() - Method in class uk.ac.ic.doc.automed.editor.GUITool
 
updateFields() - Method in class uk.ac.ic.doc.automed.editor.IQLTool
 
updateFields() - Method in class uk.ac.ic.doc.automed.editor.MatchingTool
 
updateFields() - Method in class uk.ac.ic.doc.automed.editor.PathwayOptimiserTool
 
updateFields() - Method in class uk.ac.ic.doc.automed.editor.ReportException
 
updateFields() - Method in class uk.ac.ic.doc.automed.editor.WrapperTool
 
updateFields() - Method in class uk.ac.ic.doc.automed.editor.XMLSchemaEditor
 
updateFields() - Method in class uk.ac.ic.doc.rodex.p2p.gui.CacheViewerFrame
Implements GUITool abstract methods
UpdateLineColumn(char) - Method in class uk.ac.bbk.dcs.automed.qproc.annotate.grammars.schemes.SimpleCharStream
 
UpdateLineColumn(char) - Method in class uk.ac.bbk.dcs.automed.qproc.annotate.grammars.simpleComp.SimpleCharStream
 
UpdateLineColumn(char) - Method in class uk.ac.bbk.dcs.automed.qproc.annotate.grammars.simpleCompAppend.SimpleCharStream
 
UpdateLineColumn(char) - Method in class uk.ac.bbk.dcs.automed.qproc.annotate.grammars.simpleCompAppendMonus.SimpleCharStream
 
UpdateLineColumn(char) - Method in class uk.ac.bbk.dcs.automed.qproc.translators.xquery.SimpleCharStream
 
updatePeer(String, String, String, String) - Method in class uk.ac.ic.doc.automed.p2p.directory.P2PDirectory
Update peer status
updatePeer(String, String) - Method in class uk.ac.ic.doc.automed.p2p.directory.P2PDirectory
Update peer using name and url
updatePeer(String, String) - Method in class uk.ac.ic.doc.automed.p2p.directory.P2PDirectoryRepository
 
updatePeer(String, String, String, String) - Method in class uk.ac.ic.doc.automed.p2p.directory.P2PDirectoryRepository
Overloaded method to update peer status
updatePeer(String, String) - Method in class uk.ac.ic.doc.automed.p2p.MessageHandler
 
updatePeerAddress(String, String, String) - Method in class uk.ac.ic.doc.automed.p2p.directory.P2PDirectory
Update peer's address with a new address
updatePeerAddress(String, String, String) - Method in class uk.ac.ic.doc.automed.p2p.directory.P2PDirectoryRepository
Change peer's address to a new one (peer belongs specific domain)
updatePeersStatus(String, String, String, String) - Method in class uk.ac.ic.doc.automed.p2p.directory.P2PDirectoryRepository
Change inactive peers into flush peers at hold-time
updateSchemaObjectNameHashMap() - Method in class uk.ac.ic.doc.automed.reps.Schema
Update this Schema's hashmap of how each SchemaObject in the schema is named.
updateSchemaRef(Cell, Schema) - Method in class uk.ac.bbk.dcs.automed.qproc.reformulate.CompositeViewMap
Forces the schema reference for a Cell tree to the given schema.
updateSchemaRef(Cell, Schema) - Static method in class uk.ac.bbk.dcs.automed.qproc.reformulate.ReformulationUtility
Forces the schema reference for a Cell tree to the given schema.
updateSchemeInfo(SchemeInfo, Schema) - Static method in class uk.ac.bbk.dcs.automed.qproc.reformulate.ReformulationUtility
Update a Scheme info by contacting low-level SchemaObject API.
updateSchemeInfo(Cell, Schema) - Static method in class uk.ac.bbk.dcs.automed.qproc.reformulate.ReformulationUtility
Helper method for ReformulationUtility.updateSchemeInfo(SchemeInfo, Schema).
updateSSDPatterns() - Method in class uk.ac.ic.doc.automed.ssd.SSDFormat
 
updateWrapperSchemaMap(Schema[]) - Method in class uk.ac.bbk.dcs.automed.qproc.annotate.StandardQueryAnnotationProvider
 
UPPER_BOUND - Static variable in class uk.ac.bbk.dcs.automed.qproc.GQP
Deprecated.  
UpperCase - Class in uk.ac.bbk.dcs.automed.qproc.functions.string
Turns the input string into uppercase.
UpperCase() - Constructor for class uk.ac.bbk.dcs.automed.qproc.functions.string.UpperCase
 
url - Variable in class uk.ac.ic.doc.automed.p2p.directory.PeerDescription
 
url - Variable in class uk.ac.ic.doc.automed.wrappers.AutoMedWrapper
 
usage() - Static method in class uk.ac.bbk.dcs.automed.hdmstore.HdmStoreCmd
Show the useage message
use(String) - Method in class uk.ac.bbk.dcs.automed.hdmstore.HdmStore
Use the named HDM store - subsequent calls to this HdmStore will use this store as default
USE_CACHE_ONLY - Static variable in interface uk.ac.ic.doc.automed.qproc.cache.CachePolicy
 
USE_LIVE_DATA_ONLY - Static variable in interface uk.ac.ic.doc.automed.qproc.cache.CachePolicy
 
user - Variable in class uk.ac.ic.doc.automed.util.db.DBAccess
 
UserAction - Class in uk.ac.ic.doc.automed.editor
 
UserAction() - Constructor for class uk.ac.ic.doc.automed.editor.UserAction
 
UserActionClass - Class in uk.ac.ic.doc.automed.editor
 
UserActionClass(Action) - Constructor for class uk.ac.ic.doc.automed.editor.UserActionClass
 
userActionNodeReidentify(Gui, Object[]) - Static method in class uk.ac.ic.doc.automed.reps.HDMTransformations
The user action to do a node reidentify
userActionRemoveRecursion(Gui, Object[]) - Static method in class uk.ac.ic.doc.automed.reps.HDMTransformations
The user action to do a node reidentify
UserActionResult - Class in uk.ac.ic.doc.automed.editor
 
UserActionResult() - Constructor for class uk.ac.ic.doc.automed.editor.UserActionResult
 
userName - Static variable in class uk.ac.ic.doc.automed.MDR
 
USERNAME - Static variable in class uk.ac.ic.doc.automed.p2p.protocol.P2PConstants
 
username - Variable in class uk.ac.ic.doc.automed.wrappers.AutoMedWrapper
 
Util - Class in uk.ac.ic.doc.automed.matching
 
Util() - Constructor for class uk.ac.ic.doc.automed.matching.Util
 
Util - Class in uk.ac.ic.doc.automed.p2p.util
 
Util() - Constructor for class uk.ac.ic.doc.automed.p2p.util.Util
 
Util - Class in uk.ac.ic.doc.automed
 
Util() - Constructor for class uk.ac.ic.doc.automed.Util
 
Util - Class in uk.ac.ic.doc.rodex.qproc
 
Utility - Class in uk.ac.ic.doc.automed.reps
Class offering utility methods for accessing a SchemaObject's scheme.
Utility() - Constructor for class uk.ac.ic.doc.automed.reps.Utility
 

V

validateConstraints(Gui, Object[]) - Static method in class uk.ac.ic.doc.automed.editor.Gui
Validate the constraints in an HDM schema
validateConstraints(Schema) - Method in class uk.ac.ic.doc.automed.reps.HighLevelToHDM
This method verifies that the HDM constraints added to this schema are valid
validateReply(AbstractMessage, String) - Method in class uk.ac.ic.doc.automed.p2p.MessageHandler
 
validateSchema(String) - Method in class uk.ac.bbk.dcs.automed.xml.wrappers.XMLSchemaValidator
 
VALIDATING - Static variable in class uk.ac.bbk.dcs.automed.xml.wrappers.XMLWrapperFactory
A feature stating whether the parser of the XML file should validate the file against the accompanying XML Schema/DTD.
validQuery(ASG) - Method in class uk.ac.bbk.dcs.automed.hdmstore.HdmWrapper
check that the given ASG is a valid query
value() - Method in class uk.ac.bbk.dcs.automed.hdmstore.Span
Get the value
VALUE - Static variable in class uk.ac.ic.doc.automed.p2p.protocol.P2PConstants
 
VALUE - Static variable in class uk.ac.ic.doc.automed.p2p.tree.TreeNode
 
Value - Class in uk.ac.ic.doc.automed.p2p.tree
 
Value(String) - Constructor for class uk.ac.ic.doc.automed.p2p.tree.Value
 
Value(Object) - Constructor for class uk.ac.ic.doc.automed.p2p.tree.Value
 
VALUE_CLASS - Static variable in class uk.ac.ic.doc.automed.wrappers.AutoMedQuery
A class of token that represents an atomic value in an expression
VALUE_EQUALS - Static variable in interface uk.ac.bbk.dcs.automed.qproc.translators.xquery.XQuery2IQLConstants
 
VALUE_GREATER_THAN - Static variable in interface uk.ac.bbk.dcs.automed.qproc.translators.xquery.XQuery2IQLConstants
 
VALUE_GREATER_THAN_EQUALS - Static variable in interface uk.ac.bbk.dcs.automed.qproc.translators.xquery.XQuery2IQLConstants
 
VALUE_LESS_THAN - Static variable in interface uk.ac.bbk.dcs.automed.qproc.translators.xquery.XQuery2IQLConstants
 
VALUE_LESS_THAN_EQUALS - Static variable in interface uk.ac.bbk.dcs.automed.qproc.translators.xquery.XQuery2IQLConstants
 
VALUE_NOT_EQUALS - Static variable in interface uk.ac.bbk.dcs.automed.qproc.translators.xquery.XQuery2IQLConstants
 
ValueList - Class in uk.ac.ic.doc.automed.p2p.tree
 
ValueList(String) - Constructor for class uk.ac.ic.doc.automed.p2p.tree.ValueList
 
values - Variable in class uk.ac.ic.doc.automed.p2p.tree.MainObjectClasses
 
varAsMap - Variable in class uk.ac.bbk.dcs.automed.wrappers.IQLTranslator
Contains mapping between variables and the AS SQL names of the constructs that the variables point to.
varConsMap - Variable in class uk.ac.bbk.dcs.automed.wrappers.IQLTranslator
Contains mapping between variables and SQL constructs.
variable() - Method in class uk.ac.bbk.dcs.automed.qproc.annotate.grammars.simpleComp.SimpleComp
 
variable() - Method in class uk.ac.bbk.dcs.automed.qproc.annotate.grammars.simpleCompAppend.SimpleCompAppend
 
variable() - Method in class uk.ac.bbk.dcs.automed.qproc.annotate.grammars.simpleCompAppendMonus.SimpleCompAppendMonus
 
variable - Static variable in class uk.ac.bbk.dcs.automed.qproc.iql.Cell
 
varOrCons() - Method in class uk.ac.bbk.dcs.automed.qproc.annotate.grammars.schemes.Schemes
 
varOrCons() - Method in class uk.ac.bbk.dcs.automed.qproc.annotate.grammars.simpleComp.SimpleComp
 
varOrCons() - Method in class uk.ac.bbk.dcs.automed.qproc.annotate.grammars.simpleCompAppend.SimpleCompAppend
 
varOrCons() - Method in class uk.ac.bbk.dcs.automed.qproc.annotate.grammars.simpleCompAppendMonus.SimpleCompAppendMonus
 
VARTOKEN - Static variable in interface uk.ac.bbk.dcs.automed.qproc.annotate.grammars.schemes.SchemesConstants
 
VARTOKEN - Static variable in interface uk.ac.bbk.dcs.automed.qproc.annotate.grammars.simpleComp.SimpleCompConstants
 
VARTOKEN - Static variable in interface uk.ac.bbk.dcs.automed.qproc.annotate.grammars.simpleCompAppend.SimpleCompAppendConstants
 
VARTOKEN - Static variable in interface uk.ac.bbk.dcs.automed.qproc.annotate.grammars.simpleCompAppendMonus.SimpleCompAppendMonusConstants
 
VarToken - Static variable in class uk.ac.bbk.dcs.automed.qproc.iql.EnvSym
 
VarToken - Static variable in class uk.ac.bbk.dcs.automed.qproc.iql.QSym
 
VARTOKEN - Static variable in interface uk.ac.bbk.dcs.automed.qproc.translators.xquery.XQuery2IQLConstants
 
Vectors - Class in uk.ac.ic.doc.automed.matching.modules.bidirectionalmap
 
Vectors(List) - Constructor for class uk.ac.ic.doc.automed.matching.modules.bidirectionalmap.Vectors
 
VERBOSE - Static variable in class uk.ac.bbk.dcs.automed.hdmstore.Debug
 
viewAnalysers - Variable in class uk.ac.ic.doc.rodex.qproc.MiniConQueryRewriter
 
ViewKey - Class in uk.ac.bbk.dcs.automed.qproc.reformulate
Implements the key functionality for the atomic and composite views.
ViewKey(SchemeInfo) - Constructor for class uk.ac.bbk.dcs.automed.qproc.reformulate.ViewKey
 
viewmap - Variable in class uk.ac.bbk.dcs.automed.qproc.reformulate.GAVQueryReformulationProvider
Viewmap contains the constructs of the source schema in the LHS and the IQL view of each construct of the LHS in the RHS.
views - Variable in class uk.ac.ic.doc.rodex.qproc.QueryRewriter
 
views - Variable in class uk.ac.ic.doc.rodex.qproc.QueryRewriterResult
 
VIRTUAL_TYPE - Static variable in class uk.ac.ic.doc.automed.reps.Schema
No details are held in the repository about VIRTUAL_TYPE schemas, other than the name of schema.
VirtualSchemaEvolution - Class in uk.ac.bbk.dcs.automed.evolution.schemaModelEvolution
 
VirtualSchemaEvolution(boolean, Schema, Schema) - Constructor for class uk.ac.bbk.dcs.automed.evolution.schemaModelEvolution.VirtualSchemaEvolution
 
VirtualSchemaEvolution - Class in uk.ac.bbk.dcs.automed.evolution1
 
visited() - Method in class uk.ac.bbk.dcs.automed.graph.DirectedGraphNode
Marks the calling node as visited.

W

waffle(String) - Method in class uk.ac.bbk.dcs.automed.hdmstore.Debug
Write a verbose level message
WAIT_BEFORE_ACCESS - Static variable in class uk.ac.ic.doc.automed.p2p.overlay.OverlayController
 
WAIT_NEXT_RECEIVE - Static variable in class uk.ac.ic.doc.automed.p2p.Constants
Time to wait (in millisecs) for receival of next fragment in the same trunk (used in UDP transmission involved package fragmentation)
WAIT_NEXT_SEND - Static variable in class uk.ac.ic.doc.automed.p2p.Constants
Time to wait (in millisecs) for next send of fragment in the same trunk (used in UDP transmission involved package fragmentation)
waitBeforeAccess() - Static method in class uk.ac.ic.doc.automed.p2p.overlay.OverlayController
Wait a bit before access (call this method before each call to put() inside a loop)
warn(String) - Static method in class uk.ac.ic.doc.automed.util.Logger
 
WARNING - Static variable in interface uk.ac.ic.doc.automed.xml.XMLifyConstants
 
warning(SAXParseException) - Method in class uk.ac.ic.doc.automed.xml.XMLReader
 
wasVisited() - Method in class uk.ac.bbk.dcs.automed.graph.DirectedGraphNode
 
weakHeadNF(Cell) - Method in class uk.ac.bbk.dcs.automed.qproc.evaluate.Evaluator
Evaluates the input ASG to weak head normal form.
WHERE - Static variable in interface uk.ac.bbk.dcs.automed.qproc.translators.xquery.XQuery2IQLConstants
 
WHERE - Static variable in class uk.ac.ic.doc.automed.wrappers.SQLQuery
The only field should contain a logical operator or a comparison
whereExpr(LinkedList) - Method in class uk.ac.bbk.dcs.automed.qproc.translators.xquery.XQuery2IQL
 
WHITESPACE_COLLAPSE - Static variable in class uk.ac.bbk.dcs.automed.xml.wrappers.XMLWrapperFactory
A feature stating that after the processing implied by replace, contiguous sequences of #x20's are collapsed to a single #x20, and leading and trailing #x20's are removed.
WHITESPACE_REPLACE - Static variable in class uk.ac.bbk.dcs.automed.xml.wrappers.XMLWrapperFactory
A feature stating that all occurrences of #x9 (tab), #xA (line feed) and #xD (carriage return) are replaced with #x20 (space).
whnfTimeSpent - Variable in class uk.ac.bbk.dcs.automed.qproc.evaluate.Evaluator
 
window - Variable in class uk.ac.ic.doc.automed.editor.GUITool
 
wLayout - Variable in class uk.ac.ic.doc.automed.editor.GUITool
 
wrap(PeerDescription) - Method in class uk.ac.ic.doc.automed.p2p.gui.PeerApplication
Store the details of a PeerDescription as an AccessMethod in the local repository.
wrap() - Method in class uk.ac.ic.doc.automed.p2p.gui.SchemaInfoFrame
Store the details from the P2PRegistry as an AccessMethod in the local repository.
WrapInterproOutput - Class in uk.ac.bbk.dcs.automed.xml.experiments.ws
 
WrapInterproOutput() - Constructor for class uk.ac.bbk.dcs.automed.xml.experiments.ws.WrapInterproOutput
 
WRAPPERTOKEN - Static variable in interface uk.ac.bbk.dcs.automed.qproc.annotate.grammars.schemes.SchemesConstants
 
WRAPPERTOKEN - Static variable in interface uk.ac.bbk.dcs.automed.qproc.annotate.grammars.simpleComp.SimpleCompConstants
 
WRAPPERTOKEN - Static variable in interface uk.ac.bbk.dcs.automed.qproc.annotate.grammars.simpleCompAppend.SimpleCompAppendConstants
 
WRAPPERTOKEN - Static variable in interface uk.ac.bbk.dcs.automed.qproc.annotate.grammars.simpleCompAppendMonus.SimpleCompAppendMonusConstants
 
WrapperTool - Class in uk.ac.ic.doc.automed.editor
A WrapperTool instance provides a window in which as user may enter the details required to create an AccessMethod describing a data source, and then calls an AutoMedWrapper class to create a source oriented schema in the AutoMed repository that represents the data source.
WrapperTool(Gui) - Constructor for class uk.ac.ic.doc.automed.editor.WrapperTool
 
WrapUniProtOutput - Class in uk.ac.bbk.dcs.automed.xml.experiments.ws
 
WrapUniProtOutput() - Constructor for class uk.ac.bbk.dcs.automed.xml.experiments.ws.WrapUniProtOutput
 
write(OutputStream, int) - Method in class uk.ac.ic.doc.automed.reps.AccessMethod
 
write(OutputStream) - Method in class uk.ac.ic.doc.automed.reps.Construct
 
write(PrintWriter) - Method in class uk.ac.ic.doc.automed.reps.Construct
 
write(OutputStream) - Method in class uk.ac.ic.doc.automed.reps.ConstructScheme
 
write(PrintWriter) - Method in class uk.ac.ic.doc.automed.reps.ConstructScheme
 
write(OutputStream) - Method in class uk.ac.ic.doc.automed.reps.Model
 
write(PrintWriter) - Method in class uk.ac.ic.doc.automed.reps.Model
 
write() - Method in class uk.ac.ic.doc.automed.reps.Pathway
Write out the series of transformations found in this pathway to the standard output in a human readable form
write(OutputStream) - Method in class uk.ac.ic.doc.automed.reps.Pathway
 
write(PrintWriter, String) - Method in class uk.ac.ic.doc.automed.reps.Pathway
 
write(OutputStream, int) - Method in class uk.ac.ic.doc.automed.reps.Pathway
 
write() - Method in class uk.ac.ic.doc.automed.reps.Schema
Write to the standard out a text representation of this Schema object, in a form suitable for human interpretation, and suitable for being used as the input to #read()
write(OutputStream) - Method in class uk.ac.ic.doc.automed.reps.Schema
 
write(OutputStream, int) - Method in class uk.ac.ic.doc.automed.reps.Schema
 
write(PrintWriter) - Method in class uk.ac.ic.doc.automed.reps.Schema
 
write(OutputStream) - Method in class uk.ac.ic.doc.automed.reps.SchemaObject
 
write(PrintWriter) - Method in class uk.ac.ic.doc.automed.reps.SchemaObject
 
write() - Method in class uk.ac.ic.doc.automed.reps.Transformation
 
write(OutputStream) - Method in class uk.ac.ic.doc.automed.reps.Transformation
 
write(PrintWriter) - Method in class uk.ac.ic.doc.automed.reps.Transformation
 
write(PrintWriter, String) - Method in class uk.ac.ic.doc.automed.reps.Transformation
 
WRITE_DELAY - Static variable in class uk.ac.ic.doc.automed.util.db.Constants
default write_delay value for HSQLDB
writeAttribute(String, boolean) - Method in class uk.ac.ic.doc.automed.xml.XMLWriter
 
writeAttribute(String, byte) - Method in class uk.ac.ic.doc.automed.xml.XMLWriter
 
writeAttribute(String, char) - Method in class uk.ac.ic.doc.automed.xml.XMLWriter
 
writeAttribute(String, double) - Method in class uk.ac.ic.doc.automed.xml.XMLWriter
 
writeAttribute(String, int) - Method in class uk.ac.ic.doc.automed.xml.XMLWriter
 
writeAttribute(String, float) - Method in class uk.ac.ic.doc.automed.xml.XMLWriter
 
writeAttribute(String, long) - Method in class uk.ac.ic.doc.automed.xml.XMLWriter
 
writeAttribute(String, short) - Method in class uk.ac.ic.doc.automed.xml.XMLWriter
 
writeAttribute(String, Object) - Method in class uk.ac.ic.doc.automed.xml.XMLWriter
 
writeAttribute(String, String) - Method in class uk.ac.ic.doc.automed.xml.XMLWriter
 
writeCDATA(String) - Method in class uk.ac.ic.doc.automed.xml.XMLWriter
 
writeCharData(String) - Method in class uk.ac.ic.doc.automed.xml.XMLWriter
 
writeDOM(Document, File) - Static method in class uk.ac.bbk.dcs.automed.xml.utilities.XMLUtilities
 
writeDOM(Node, File) - Static method in class uk.ac.bbk.dcs.automed.xml.utilities.XMLUtilities
 
writeDOM(Document, String) - Static method in class uk.ac.bbk.dcs.automed.xml.utilities.XMLUtilities
Serializes the input DOM representation into file "url".
writeDOM(Document, String, String) - Static method in class uk.ac.bbk.dcs.automed.xml.utilities.XMLUtilities
Serializes the input DOM representation into file "fileName" in path "filePath".
writeInFile(AbstractMessage) - Static method in class uk.ac.ic.doc.automed.p2p.util.Util
 
writeSimilarSchemaElementPairs(String, SimilarSchemaElementPair[]) - Static method in class uk.ac.ic.doc.automed.matching.SimilarSchemaElementPair
 
writeToRepository() - Method in class uk.ac.ic.doc.automed.tml.TempPathway
 
writeToRepository(boolean) - Method in class uk.ac.ic.doc.automed.tml.TempPathway
Write an optimised pathway to the repository
WRONG_FORMAT - Static variable in class uk.ac.ic.doc.automed.p2p.protocol.P2PConstants
 

X

x - Variable in class uk.ac.ic.doc.automed.editor.autolayout.DPoint
 
xInset - Static variable in class uk.ac.ic.doc.automed.editor.DrawVertex
 
XML_COLOUR - Static variable in class uk.ac.ic.doc.automed.wrappers.XMLSchemaWrapperFactory
 
XML_MODEL_CONS - Static variable in class uk.ac.ic.doc.automed.wrappers.XMLSchemaWrapperFactory
 
XML_MODEL_PREFIX - Static variable in class uk.ac.ic.doc.automed.wrappers.XMLSchemaWrapperFactory
 
XML_SCHEMA_COLOUR - Static variable in class uk.ac.ic.doc.automed.wrappers.XMLSchemaWrapperFactory
 
XML_SCHEMA_ICON_ATTRIBUTE - Static variable in class uk.ac.ic.doc.automed.wrappers.XMLSchemaWrapperFactory
 
XML_SCHEMA_ICON_COLLAPSED - Static variable in class uk.ac.ic.doc.automed.wrappers.XMLSchemaWrapperFactory
 
XML_SCHEMA_ICON_DERIVED_TYPE - Static variable in class uk.ac.ic.doc.automed.wrappers.XMLSchemaWrapperFactory
 
XML_SCHEMA_ICON_DIRECTORY - Static variable in class uk.ac.ic.doc.automed.wrappers.XMLSchemaWrapperFactory
Icon filenames
XML_SCHEMA_ICON_ELEMENT - Static variable in class uk.ac.ic.doc.automed.wrappers.XMLSchemaWrapperFactory
 
XML_SCHEMA_ICON_EXPANDED - Static variable in class uk.ac.ic.doc.automed.wrappers.XMLSchemaWrapperFactory
 
XML_SCHEMA_ICON_KEYREF - Static variable in class uk.ac.ic.doc.automed.wrappers.XMLSchemaWrapperFactory
 
XML_SCHEMA_ICON_PRIMARY_KEY - Static variable in class uk.ac.ic.doc.automed.wrappers.XMLSchemaWrapperFactory
 
XML_SCHEMA_INTEGER - Static variable in class uk.ac.ic.doc.automed.wrappers.XMLSchemaWrapperFactory
 
XML_SCHEMA_MODEL_ATTRIBUTE - Static variable in class uk.ac.ic.doc.automed.wrappers.XMLSchemaWrapperFactory
 
XML_SCHEMA_MODEL_COMPLEX_ELEMENT - Static variable in class uk.ac.ic.doc.automed.wrappers.XMLSchemaWrapperFactory
 
XML_SCHEMA_MODEL_DEFAULT_KEY - Static variable in class uk.ac.ic.doc.automed.wrappers.XMLSchemaWrapperFactory
 
XML_SCHEMA_MODEL_FK_SUFFIX - Static variable in class uk.ac.ic.doc.automed.wrappers.XMLSchemaWrapperFactory
 
XML_SCHEMA_MODEL_KEYREF - Static variable in class uk.ac.ic.doc.automed.wrappers.XMLSchemaWrapperFactory
 
XML_SCHEMA_MODEL_NAME - Static variable in class uk.ac.ic.doc.automed.wrappers.XMLSchemaWrapperFactory
Constants
XML_SCHEMA_MODEL_PARENT - Static variable in class uk.ac.ic.doc.automed.wrappers.XMLSchemaWrapperFactory
 
XML_SCHEMA_MODEL_PK_SUFFIX - Static variable in class uk.ac.ic.doc.automed.wrappers.XMLSchemaWrapperFactory
 
XML_SCHEMA_MODEL_PREFIX - Static variable in class uk.ac.ic.doc.automed.wrappers.XMLSchemaWrapperFactory
 
XML_SCHEMA_MODEL_PRIMARY_KEY - Static variable in class uk.ac.ic.doc.automed.wrappers.XMLSchemaWrapperFactory
 
XML_SCHEMA_MODEL_ROOT - Static variable in class uk.ac.ic.doc.automed.wrappers.XMLSchemaWrapperFactory
 
XML_SCHEMA_MODEL_SIMPLE_ELEMENT - Static variable in class uk.ac.ic.doc.automed.wrappers.XMLSchemaWrapperFactory
 
XML_SCHEMA_MODEL_TYPE_SUFFIX - Static variable in class uk.ac.ic.doc.automed.wrappers.XMLSchemaWrapperFactory
 
XML_SCHEMA_PI - Static variable in class uk.ac.ic.doc.automed.wrappers.XMLSchemaWrapperFactory
 
XML_SCHEMA_UNBOUNDED - Static variable in class uk.ac.ic.doc.automed.wrappers.XMLSchemaWrapperFactory
 
XML_VALUE_DELIMITER - Static variable in class uk.ac.ic.doc.automed.p2p.protocol.P2PConstants
 
XMLConstants - Class in uk.ac.bbk.dcs.automed.xml
 
XMLConstants() - Constructor for class uk.ac.bbk.dcs.automed.xml.XMLConstants
 
XMLDSSDOM - Class in uk.ac.bbk.dcs.automed.xml.wrappers
The XMLDataSourceSchema class represents the DataSource Schema of an XML file using DOM.
XMLDSSDOMFromXSD - Class in uk.ac.bbk.dcs.automed.xml.wrappers
Parses an XML Schema and creates the corresponding XMLDSS in DOM format.
XMLDSSDOMFromXSD(String, String, boolean) - Constructor for class uk.ac.bbk.dcs.automed.xml.wrappers.XMLDSSDOMFromXSD
 
XMLDSSDOMFromXSD(String, String) - Constructor for class uk.ac.bbk.dcs.automed.xml.wrappers.XMLDSSDOMFromXSD
 
XMLDSSDOMMaterialiser - Class in uk.ac.bbk.dcs.automed.xml.materialisation
 
XMLDSSDOMMaterialiser(Schema, Schema[], String, String, QueryProcessorConfiguration) - Constructor for class uk.ac.bbk.dcs.automed.xml.materialisation.XMLDSSDOMMaterialiser
 
xmldssExtractionMethod - Variable in class uk.ac.bbk.dcs.automed.xml.wrappers.XMLWrapperFactory
 
XMLDSSFromAMSchema - Class in uk.ac.bbk.dcs.automed.xml.wrappers
Class that creates a DOM XMLDSS schema from an underlying AutoMed XMLDSS schema.
XMLDSSFromAMSchema() - Constructor for class uk.ac.bbk.dcs.automed.xml.wrappers.XMLDSSFromAMSchema
 
XMLDSSFromDTD - Class in uk.ac.bbk.dcs.automed.xml.wrappers
 
XMLDSSFromDTD() - Constructor for class uk.ac.bbk.dcs.automed.xml.wrappers.XMLDSSFromDTD
 
XMLDSSFromRDB - Class in uk.ac.bbk.dcs.automed.xml.relational
Create graph

XMLDSSFromRDB(String, String, String, String, String, String) - Constructor for class uk.ac.bbk.dcs.automed.xml.relational.XMLDSSFromRDB
 
XMLDSSFromXMLSchema - Class in uk.ac.bbk.dcs.automed.xml.wrappers
Parses an XML Schema and creates the corresponding XMLDSS in DOM format.
XMLDSSGraph - Class in uk.ac.bbk.dcs.automed.xml.xmldssGraph
Class Task Description
XMLDSSGraph(Document) - Constructor for class uk.ac.bbk.dcs.automed.xml.xmldssGraph.XMLDSSGraph
 
XMLDSSGraphAttribute - Class in uk.ac.bbk.dcs.automed.xml.xmldssGraph
Class Task Description
XMLDSSGraphElement - Class in uk.ac.bbk.dcs.automed.xml.xmldssGraph
Class Task Description
XMLDSSGraphException - Exception in uk.ac.bbk.dcs.automed.xml.xmldssGraph
Class Task Description
XMLDSSGraphException(String) - Constructor for exception uk.ac.bbk.dcs.automed.xml.xmldssGraph.XMLDSSGraphException
 
XMLDSSGraphException(String, Exception) - Constructor for exception uk.ac.bbk.dcs.automed.xml.xmldssGraph.XMLDSSGraphException
Creates an XMLException when it is acting as a wrapper for other Exceptions.
XMLDSSGraphText - Class in uk.ac.bbk.dcs.automed.xml.xmldssGraph
Class Task Description
XMLDSSMaterialiser - Class in uk.ac.bbk.dcs.automed.xml.materialisation
Class Task Description
XMLDSSMaterialiser(Schema, Schema[], String, String, QueryProcessorConfiguration) - Constructor for class uk.ac.bbk.dcs.automed.xml.materialisation.XMLDSSMaterialiser
 
XMLDSSNXDB - Class in uk.ac.bbk.dcs.automed.xml.wrappers
Class Task Description
XMLDSSRestructurer - Class in uk.ac.bbk.dcs.automed.xml.xmldssGraph
Class that automatically integrates two fully conformed AutoMed XML DataSource Schemas S1 and S2.
XMLDSSRestructurer(Schema, Document, Schema, Document) - Constructor for class uk.ac.bbk.dcs.automed.xml.xmldssGraph.XMLDSSRestructurer
 
XMLDSSSAX - Class in uk.ac.bbk.dcs.automed.xml.wrappers
The XMLDataSourceSchema class represents the DataSource Schema of an XML file using SAX.
XMLDSSSAXMaterialiser - Class in uk.ac.bbk.dcs.automed.xml.materialisation
Class Task Description
XMLDSSSAXMaterialiser() - Constructor for class uk.ac.bbk.dcs.automed.xml.materialisation.XMLDSSSAXMaterialiser
 
XMLException - Exception in uk.ac.bbk.dcs.automed.xml
An exception relating to the XML package.
XMLException(String) - Constructor for exception uk.ac.bbk.dcs.automed.xml.XMLException
 
XMLException(String, Exception) - Constructor for exception uk.ac.bbk.dcs.automed.xml.XMLException
Creates an XMLException when it is acting as a wrapper for other Exceptions.
XMLException - Exception in uk.ac.ic.doc.automed.xml
 
XMLException(String) - Constructor for exception uk.ac.ic.doc.automed.xml.XMLException
 
xmlExtension - Static variable in class uk.ac.bbk.dcs.automed.xml.XMLConstants
 
XMLFileFilter - Class in uk.ac.ic.doc.automed.wrappers
A convenience implementation of FileFilter that filters out all files except for those type extensions that it knows about.
XMLFileFilter() - Constructor for class uk.ac.ic.doc.automed.wrappers.XMLFileFilter
Creates a file filter.
XMLFileFilter(String) - Constructor for class uk.ac.ic.doc.automed.wrappers.XMLFileFilter
Creates a file filter that accepts files with the given extension.
XMLFileFilter(String, String) - Constructor for class uk.ac.ic.doc.automed.wrappers.XMLFileFilter
Creates a file filter that accepts the given file type.
XMLFileFilter(String[]) - Constructor for class uk.ac.ic.doc.automed.wrappers.XMLFileFilter
Creates a file filter from the given string array.
XMLFileFilter(String[], String) - Constructor for class uk.ac.ic.doc.automed.wrappers.XMLFileFilter
Creates a file filter from the given string array and description.
XMLFunctionTable - Class in uk.ac.bbk.dcs.automed.xml.functions
FunctionTable containing XML-related IQL functions.
XMLFunctionTable() - Constructor for class uk.ac.bbk.dcs.automed.xml.functions.XMLFunctionTable
 
XmlHandler - Class in uk.ac.ic.doc.automed.p2p.util
 
XmlHandler() - Constructor for class uk.ac.ic.doc.automed.p2p.util.XmlHandler
 
XMLifyConstants - Interface in uk.ac.ic.doc.automed.xml
 
XMLifyConstants.IgnoreNextElementException - Exception in uk.ac.ic.doc.automed.xml
 
XMLifyConstants.IgnoreNextElementException() - Constructor for exception uk.ac.ic.doc.automed.xml.XMLifyConstants.IgnoreNextElementException
 
XMLMaterialisationException - Exception in uk.ac.bbk.dcs.automed.xml.materialisation
An exception relating to the XML package.
XMLMaterialisationException(String) - Constructor for exception uk.ac.bbk.dcs.automed.xml.materialisation.XMLMaterialisationException
 
XMLMaterialisationException(String, Exception) - Constructor for exception uk.ac.bbk.dcs.automed.xml.materialisation.XMLMaterialisationException
Creates an XMLException when it is acting as a wrapper for other Exceptions.
XMLNotFoundException - Exception in uk.ac.bbk.dcs.automed.xml
An exception relating to something not found in an XML context.
XMLNotFoundException(String) - Constructor for exception uk.ac.bbk.dcs.automed.xml.XMLNotFoundException
 
XMLNotFoundException(String, Exception) - Constructor for exception uk.ac.bbk.dcs.automed.xml.XMLNotFoundException
Creates an XMLNotFoundException when it is acting as a wrapper for other Exceptions.
XMLOutputter - Class in uk.ac.ic.doc.automed.xmlschema.output
 
XMLOutputter(Document, Schema, String) - Constructor for class uk.ac.ic.doc.automed.xmlschema.output.XMLOutputter
Creates a new instance of XMLOutputter
XMLQPConfiguration - Class in uk.ac.bbk.dcs.automed.xml
 
XMLQPConfiguration() - Constructor for class uk.ac.bbk.dcs.automed.xml.XMLQPConfiguration
 
XMLReader - Class in uk.ac.ic.doc.automed.xml
 
XMLReader() - Constructor for class uk.ac.ic.doc.automed.xml.XMLReader
 
XMLReader(int) - Constructor for class uk.ac.ic.doc.automed.xml.XMLReader
 
XMLReaderException - Exception in uk.ac.ic.doc.automed.xml
 
XMLReaderException(String) - Constructor for exception uk.ac.ic.doc.automed.xml.XMLReaderException
 
XMLRestructurer - Class in uk.ac.bbk.dcs.automed.xml
Class that automatically integrates two fully conformed AutoMed XML DataSource Schemas S1 and S2.
XMLRestructurer(Schema, Document, Schema, Document, Document) - Constructor for class uk.ac.bbk.dcs.automed.xml.XMLRestructurer
 
XMLRestructuringException - Exception in uk.ac.bbk.dcs.automed.xml
Class Task Description
XMLRestructuringException(String) - Constructor for exception uk.ac.bbk.dcs.automed.xml.XMLRestructuringException
 
XMLRestructuringException(String, Exception) - Constructor for exception uk.ac.bbk.dcs.automed.xml.XMLRestructuringException
 
XMLSchemaBuilder - Class in uk.ac.ic.doc.automed.xmlschema
 
XMLSchemaBuilder(Schema) - Constructor for class uk.ac.ic.doc.automed.xmlschema.XMLSchemaBuilder
Creates a new instance of XMLSchemaBuilder based on schema
XMLSchemaEditor - Class in uk.ac.ic.doc.automed.editor
 
XMLSchemaEditor() - Constructor for class uk.ac.ic.doc.automed.editor.XMLSchemaEditor
Creates new form XMLSchemaEditor
XMLSchemaEditor(Schema, Document) - Constructor for class uk.ac.ic.doc.automed.editor.XMLSchemaEditor
Creates new XMLSchemaEditor if we have the doc and schema already
XMLSchemaOutputter - Class in uk.ac.ic.doc.automed.reps
 
XMLSchemaOutputter(Document) - Constructor for class uk.ac.ic.doc.automed.reps.XMLSchemaOutputter
Creates a new instance of XMLSchemaOutputter
XMLSchemaOutputter - Class in uk.ac.ic.doc.automed.xmlschema.output
 
XMLSchemaOutputter(String) - Constructor for class uk.ac.ic.doc.automed.xmlschema.output.XMLSchemaOutputter
Creates a new instance of XMLSchemaOutputter
XMLSchemaToXSDOM() - Method in class uk.ac.ic.doc.automed.reps.AutoMedToXSDOM
 
XMLSchemaValidator - Class in uk.ac.bbk.dcs.automed.xml.wrappers
Class Task Description
XMLSchemaValidator() - Constructor for class uk.ac.bbk.dcs.automed.xml.wrappers.XMLSchemaValidator
 
XMLSchemaWrapper - Class in uk.ac.ic.doc.automed.wrappers
 
XMLSchemaWrapper() - Constructor for class uk.ac.ic.doc.automed.wrappers.XMLSchemaWrapper
Creates a new, empty instance of XMLSchemaWrapper
XMLSchemaWrapper(AccessMethod, String) - Constructor for class uk.ac.ic.doc.automed.wrappers.XMLSchemaWrapper
This constructor is used when querying the schema
XMLSchemaWrapperFactory - Class in uk.ac.ic.doc.automed.wrappers
 
XMLSchemaWrapperFactory() - Constructor for class uk.ac.ic.doc.automed.wrappers.XMLSchemaWrapperFactory
Creates a new instance of XMLSchemaWrapperFactory
XMLSyntax - Class in uk.ac.ic.doc.automed.xml
 
XMLSyntax() - Constructor for class uk.ac.ic.doc.automed.xml.XMLSyntax
 
XMLSyntaxException - Exception in uk.ac.ic.doc.automed.xml
 
XMLSyntaxException(String) - Constructor for exception uk.ac.ic.doc.automed.xml.XMLSyntaxException
 
XMLToken - Class in uk.ac.ic.doc.automed.xml
 
XMLToken(Locator, int, String, Object) - Constructor for class uk.ac.ic.doc.automed.xml.XMLToken
 
XMLUtilities - Class in uk.ac.bbk.dcs.automed.xml.utilities
Implements useful operation on nodes.
XMLUtilities() - Constructor for class uk.ac.bbk.dcs.automed.xml.utilities.XMLUtilities
 
XMLWrapper - Class in uk.ac.bbk.dcs.automed.xml.wrappers
XMLWrapper class is a wrapper class for the AutoMed Repository.
XMLWrapperFactory - Class in uk.ac.bbk.dcs.automed.xml.wrappers
XMLWrapperFactory class.
XMLWrapperFactory() - Constructor for class uk.ac.bbk.dcs.automed.xml.wrappers.XMLWrapperFactory
Creates a new XMLWrapperFactory and sets the model name.
XMLWriter - Class in uk.ac.ic.doc.automed.xml
 
XMLWriter() - Constructor for class uk.ac.ic.doc.automed.xml.XMLWriter
 
XMLWriterException - Exception in uk.ac.ic.doc.automed.xml
 
XMLWriterException(String) - Constructor for exception uk.ac.ic.doc.automed.xml.XMLWriterException
 
xpathForAttributeQuery(Document, String, String) - Method in class uk.ac.bbk.dcs.automed.xml.wrappers.XMLWrapper
 
xpathForElementQuery(Document, String) - Method in class uk.ac.bbk.dcs.automed.xml.wrappers.XMLWrapper
 
xpathForTextQuery(Document, String) - Method in class uk.ac.bbk.dcs.automed.xml.wrappers.XMLWrapper
 
XPathSelector - Class in uk.ac.ic.doc.automed.xmlschema.output
 
XPathSelector(String, String) - Constructor for class uk.ac.ic.doc.automed.xmlschema.output.XPathSelector
Creates a new instance of XPathSelector
XPathSelector(String, String, String) - Constructor for class uk.ac.ic.doc.automed.xmlschema.output.XPathSelector
Creates a new instance of XPathSelector for a keyref with a refers element
XQuery2IQL - Class in uk.ac.bbk.dcs.automed.qproc.translators.xquery
 
XQuery2IQL(StringReader, Document) - Constructor for class uk.ac.bbk.dcs.automed.qproc.translators.xquery.XQuery2IQL
 
XQuery2IQL(InputStream) - Constructor for class uk.ac.bbk.dcs.automed.qproc.translators.xquery.XQuery2IQL
 
XQuery2IQL(Reader) - Constructor for class uk.ac.bbk.dcs.automed.qproc.translators.xquery.XQuery2IQL
 
XQuery2IQL(XQuery2IQLTokenManager) - Constructor for class uk.ac.bbk.dcs.automed.qproc.translators.xquery.XQuery2IQL
 
XQuery2IQLConstants - Interface in uk.ac.bbk.dcs.automed.qproc.translators.xquery
 
XQuery2IQLTokenManager - Class in uk.ac.bbk.dcs.automed.qproc.translators.xquery
 
XQuery2IQLTokenManager(SimpleCharStream) - Constructor for class uk.ac.bbk.dcs.automed.qproc.translators.xquery.XQuery2IQLTokenManager
 
XQuery2IQLTokenManager(SimpleCharStream, int) - Constructor for class uk.ac.bbk.dcs.automed.qproc.translators.xquery.XQuery2IQLTokenManager
 
XSDOMObject - Class in uk.ac.ic.doc.automed.wrappers.xsdomobject
 
XSDOMObject() - Constructor for class uk.ac.ic.doc.automed.wrappers.xsdomobject.XSDOMObject
Creates a new instance of XSDOMObject

Y

y - Variable in class uk.ac.ic.doc.automed.editor.autolayout.DPoint
 
YATTA_MODEL_ROOTNODE - Static variable in class uk.ac.ic.doc.automed.wrappers.YattaWrapperFactory
 
YATTA_MODEL_ROOTORYATTA - Static variable in class uk.ac.ic.doc.automed.wrappers.YattaWrapperFactory
 
YATTA_MODEL_SEQUENCE - Static variable in class uk.ac.ic.doc.automed.wrappers.YattaWrapperFactory
 
YATTA_MODEL_YATTANODE - Static variable in class uk.ac.ic.doc.automed.wrappers.YattaWrapperFactory
 
YattaDrawLinkNodalLink - Class in uk.ac.ic.doc.automed.editor.drawables
 
YattaDrawLinkNodalLink(EditorPanel, Positionable, Positionable[]) - Constructor for class uk.ac.ic.doc.automed.editor.drawables.YattaDrawLinkNodalLink
 
YattaDrawSequence - Class in uk.ac.ic.doc.automed.editor.drawables
 
YattaDrawSequence(EditorPanel, Positionable[]) - Constructor for class uk.ac.ic.doc.automed.editor.drawables.YattaDrawSequence
 
YattaDrawSequence(EditorPanel, Positionable, Positionable[]) - Constructor for class uk.ac.ic.doc.automed.editor.drawables.YattaDrawSequence
 
YattaQuery - Class in uk.ac.ic.doc.automed.wrappers
 
YattaQuery(Object[], String) - Constructor for class uk.ac.ic.doc.automed.wrappers.YattaQuery
 
YattaQueryResult - Class in uk.ac.ic.doc.automed.wrappers
 
YattaQueryResult(int) - Constructor for class uk.ac.ic.doc.automed.wrappers.YattaQueryResult
 
YattaWrapper - Class in uk.ac.ic.doc.automed.wrappers
A YATTA wrapper for semistructured data source.
YattaWrapper() - Constructor for class uk.ac.ic.doc.automed.wrappers.YattaWrapper
 
YattaWrapper(AccessMethod, String) - Constructor for class uk.ac.ic.doc.automed.wrappers.YattaWrapper
 
YattaWrapperFactory - Class in uk.ac.ic.doc.automed.wrappers
A YattaWrapperFactory class able to produce YattaWrapper instances, together with any data (schema, ssdformat, etc.) that the wrapper requires to be present in the repository.
YattaWrapperFactory() - Constructor for class uk.ac.ic.doc.automed.wrappers.YattaWrapperFactory
 
yInset - Static variable in class uk.ac.ic.doc.automed.editor.DrawVertex
 
YOUR_ADDRESS - Static variable in class uk.ac.ic.doc.automed.p2p.protocol.P2PConstants
 
yourAddress - Variable in class uk.ac.ic.doc.rodex.p2p.messages.applicationlayer.HelloMsg
 

Z

zeroOffset - Static variable in class uk.ac.ic.doc.automed.editor.DrawVertex
 

_

_action_table - Static variable in class uk.ac.bbk.dcs.automed.qproc.iql.EnvParser
Parse-action table.
_action_table - Static variable in class uk.ac.bbk.dcs.automed.qproc.iql.QParser
Parse-action table.
_annProvider - Variable in class uk.ac.bbk.dcs.automed.qproc.OldQueryProcessor
 
_cache - Static variable in class uk.ac.bbk.dcs.automed.qproc.QueryProcessor
 
_cacheOn - Variable in class uk.ac.bbk.dcs.automed.qproc.QueryProcessor
 
_containmentQuery - Variable in class uk.ac.ic.doc.rodex.qproc.QueryRewriterResult
 
_dataSourceSchemas - Variable in class uk.ac.bbk.dcs.automed.xml.materialisation.Materialiser
 
_dataSourceSchemas - Variable in class uk.ac.bbk.dcs.automed.xml.materialisation.XMLDSSMaterialiser
 
_evalProvider - Variable in class uk.ac.bbk.dcs.automed.qproc.OldQueryProcessor
 
_file - Variable in class uk.ac.bbk.dcs.automed.xml.materialisation.Materialiser
 
_file - Variable in class uk.ac.bbk.dcs.automed.xml.materialisation.XMLDSSMaterialiser
 
_ft - Variable in class uk.ac.bbk.dcs.automed.qproc.evaluate.Evaluator
 
_globalSchema - Variable in class uk.ac.bbk.dcs.automed.xml.materialisation.Materialiser
 
_globalSchema - Variable in class uk.ac.bbk.dcs.automed.xml.materialisation.XMLDSSMaterialiser
 
_instanceCache - Static variable in class uk.ac.bbk.dcs.automed.qproc.reformulate.AtomicViewMap
 
_instanceCache - Static variable in class uk.ac.bbk.dcs.automed.qproc.reformulate.CompositeViewMap
 
_logger - Variable in class uk.ac.bbk.dcs.automed.qproc.QueryProcessor
 
_logger - Static variable in class uk.ac.bbk.dcs.automed.qproc.reformulate.AtomicViewMap
 
_logger - Static variable in class uk.ac.bbk.dcs.automed.qproc.reformulate.CompositeViewMap
 
_logger - Variable in class uk.ac.bbk.dcs.automed.qproc.reformulate.QueryReformulator
 
_logger - Variable in class uk.ac.bbk.dcs.automed.qproc.TempQueryProcessor
 
_logger - Variable in class uk.ac.bbk.dcs.automed.xml.materialisation.Materialiser
 
_logger - Variable in class uk.ac.bbk.dcs.automed.xml.materialisation.XMLDSSMaterialiser
 
_logger - Variable in class uk.ac.bbk.dcs.automed.xml.wrappers.XMLWrapperFactory
 
_name - Variable in class uk.ac.bbk.dcs.automed.qproc.reformulate.AtomicViewMap
 
_name - Variable in class uk.ac.bbk.dcs.automed.qproc.reformulate.CompositeViewMap
 
_optProvider - Variable in class uk.ac.bbk.dcs.automed.qproc.OldQueryProcessor
 
_outputQuery - Variable in class uk.ac.ic.doc.rodex.qproc.QueryRewriterResult
 
_production_table - Static variable in class uk.ac.bbk.dcs.automed.qproc.iql.EnvParser
Production table.
_production_table - Static variable in class uk.ac.bbk.dcs.automed.qproc.iql.QParser
Production table.
_qa - Variable in class uk.ac.ic.doc.rodex.qproc.QueryRewriter
 
_qp - Variable in class uk.ac.bbk.dcs.automed.xml.materialisation.Materialiser
 
_qp - Variable in class uk.ac.bbk.dcs.automed.xml.materialisation.XMLDSSMaterialiser
 
_qpc - Variable in class uk.ac.bbk.dcs.automed.qproc.evaluate.Evaluator
 
_qpc - Variable in class uk.ac.bbk.dcs.automed.qproc.reformulate.AtomicViewMap
 
_qpc - Variable in class uk.ac.bbk.dcs.automed.qproc.reformulate.CompositeViewMap
 
_qpc - Variable in class uk.ac.bbk.dcs.automed.xml.materialisation.Materialiser
 
_qpc - Variable in class uk.ac.bbk.dcs.automed.xml.materialisation.XMLDSSMaterialiser
 
_qpCache - Variable in class uk.ac.bbk.dcs.automed.qproc.evaluate.Evaluator
 
_reduce_table - Static variable in class uk.ac.bbk.dcs.automed.qproc.iql.EnvParser
reduce_goto table.
_reduce_table - Static variable in class uk.ac.bbk.dcs.automed.qproc.iql.QParser
reduce_goto table.
_refProvider - Variable in class uk.ac.bbk.dcs.automed.qproc.OldQueryProcessor
 
_remainderQuery - Variable in class uk.ac.ic.doc.rodex.qproc.QueryRewriterResult
 
_resultObjs - Variable in class uk.ac.ic.doc.rodex.qproc.QueryRewriterResult
 
_resultQuery - Variable in class uk.ac.ic.doc.rodex.qproc.QueryRewriterResult
 
_resultStr - Variable in class uk.ac.ic.doc.rodex.qproc.QueryRewriterResult
 
_schemaUIDDoc - Variable in class uk.ac.bbk.dcs.automed.xml.materialisation.Materialiser
 
_schemaUIDDoc - Variable in class uk.ac.bbk.dcs.automed.xml.materialisation.XMLDSSMaterialiser
 
_sicp - Variable in class uk.ac.ic.doc.rodex.p2p.Peer
 
_sourceSchema - Variable in class uk.ac.bbk.dcs.automed.qproc.reformulate.AtomicViewMap
 
_sourceSchema - Variable in class uk.ac.bbk.dcs.automed.qproc.reformulate.CompositeViewMap
 
_targetSchema - Variable in class uk.ac.bbk.dcs.automed.qproc.reformulate.AtomicViewMap
 
_targetSchema - Variable in class uk.ac.bbk.dcs.automed.qproc.reformulate.CompositeViewMap
 
_useGenericRoot - Variable in class uk.ac.bbk.dcs.automed.xml.materialisation.Materialiser
 
_useGenericRoot - Variable in class uk.ac.bbk.dcs.automed.xml.materialisation.XMLDSSMaterialiser
 
_viewMap - Variable in class uk.ac.bbk.dcs.automed.qproc.reformulate.AtomicViewMap
 
_viewMap - Variable in class uk.ac.bbk.dcs.automed.qproc.reformulate.CompositeViewMap
 

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