eu.transformproject.provenance.opm.factory

Class OPMFactory

java.lang.Object

eu.transformproject.provenance.opm.factory.OPMFactory

public class OPMFactory
extends java.lang.Object

A factory for creating OPM objects. This is independent from hibernate. The methods manipulating persistent objects assume all their properties values have been correctly updated/created and therefore are available.

Field Summary

Fields

Modifier and Type	Field and Description
static java.util.ArrayList<java.lang.String>	COLORS
static Ontology	DEFAULT_ONTO The default ontology object.
static int	ENTITY_TYPE_SIZE The Constant ENTITY_TYPE_SIZE.
static java.util.HashMap<EntityType,java.lang.Class>	opmClasses The OPM classes.
static java.util.Map<DependenceType,OPMDependenceType>	opmDependenceTypes The OPM dependence types.
static java.util.Map<EntityType,OPMEntityType>	opmEntityTypes The OPM entity types.
static java.lang.String	UNKNOWN_ID The unknown id.
static java.lang.String	UNKNOWN_VALUE The unknown value.

Constructor Summary

Constructors

Constructor and Description
OPMFactory()

Method Summary

Methods

Modifier and Type	Method and Description
static OPMAnnotation	addAnnotation(OPMEntity subjectEntity, Property prop, java.lang.String value) Adds the annotation.
static OPMAnnotation	addAnnotation(OPMEntity subjectEntity, Property prop, java.lang.String value, boolean recreateEntityType)
static OPMAnnotation	addAnnotation(OPMEntity subjectEntity, Property prop, java.lang.String value, OPMEntityType entityType, boolean updateLinks)
static OPMAnnotation	addAnnotation(OPMEntity subjectEntity, java.lang.String iriproperty, Ontologies ontos, java.lang.String value)
static void	addAnnotations(OPMEntity entity, AnnotationSet annotations, Ontologies ontologies) Adds the annotations.
static void	addOPMEntityToGraph(OPMGraph g, OPMEntity entity) Adds the opm entity to graph.
static OPMEntity	clone(OPMEntity e) Clone.
static OPMEntity	clone(OPMEntity e, java.util.HashMap<OPMEntity,OPMEntity> cloneMap) Clone.
static OPMEntityType	clone(OPMEntityType et) Clone.
static OPMAccount	cloneAccount(OPMAccount acc, java.util.HashMap<OPMEntity,OPMEntity> cloneMap) Clone account.
static OPMAgent	cloneAgent(OPMAgent e, java.util.HashMap<OPMEntity,OPMEntity> cloneMap) Clone agent.
static OPMAnnotation	cloneAnnotation(OPMAnnotation ann, java.util.HashMap<OPMEntity,OPMEntity> cloneMap) Clone annotation.
static void	cloneAnnotationOf(OPMEntity e1, OPMAnnotation a) Clone annotation of.
static OPMArtifact	cloneArtifact(OPMArtifact e, java.util.HashMap<OPMEntity,OPMEntity> cloneMap) Clone artifact.
static OPMDependence	cloneDependence(OPMDependence dep) Clone dependence.
static OPMDependence	cloneDependence(OPMDependence dep, java.util.HashMap<OPMEntity,OPMEntity> cloneMap) Clone dependence.
static OPMGraph	cloneGraph(OPMGraph g, java.util.HashMap<OPMEntity,OPMEntity> cloneMap) Clone graph.
static OPMGraph	cloneGraph(OPMGraph g, java.util.HashSet<OPMEntity> includedEntities) Clone graph.
static OPMEntity	cloneOPMEntity(OPMEntity e, java.util.HashMap<OPMEntity,OPMEntity> cloneMap) Clone opm entity.
static OPMProcess	cloneProcess(OPMProcess e, java.util.HashMap<OPMEntity,OPMEntity> cloneMap) Clone process.
static java.util.HashSet<OPMAnnotation>	convertToOPMAnnotations(OPMEntity entity, AnnotationSet annotations, Ontologies ontologies) Convert to opm annotations.
static OPMAnnotation	createAnnotation(OPMEntity entity, Property p, java.lang.String value) Creates a new OPM object.
static OPMDependence	createDependence(OPMEntityNode entityCause, OPMEntityNode entityEffect) Creates a new OPM object.
static OPMDependence	createDependence(OPMEntityNode entityCause, OPMEntityNode entityEffect, java.lang.String id, java.lang.String value, boolean updateLinks) Creates a new OPM object.
static OPMDependence	createDependence(OPMEntityNode entityCause, OPMEntityNode entityEffect, java.lang.String id, java.lang.String value, OPMDependenceType deptype, OPMEntityType entityDependenceType) Creates a new OPM object.
static OPMDependence	createDependence(OPMEntityNode entityCause, OPMEntityNode entityEffect, java.lang.String id, java.lang.String value, OPMDependenceType deptype, OPMEntityType entityDependenceType, boolean linkDepCauseEffect) Creates a new OPM object.
static OPMDependenceType	createDependenceType(DependenceType dt) Creates a new OPM object.
static OPMEntityType	createEntityType(EntityType et) Creates a new OPM object.
static Ontology	createOntology(java.lang.String ontologyName, java.lang.String ontologyId, java.lang.String ontologyVersion) Creates a new OPM object.
static OPMAccount	createOPMAccount(java.lang.String id, java.lang.String value) Creates a new OPM object.
static OPMAccount	createOPMAccount(java.lang.String id, java.lang.String value, OPMEntityType entityAccountType) Creates a new OPM object.
static OPMAgent	createOPMAgent(java.lang.String id, java.lang.String value) Creates a new OPM object.
static OPMAgent	createOPMAgent(java.lang.String id, java.lang.String value, OPMEntityType entityAgentType)
static OPMAnnotation	createOPMAnnotation(java.lang.String id, java.lang.String value) Creates a new OPM object.
static OPMAnnotation	createOPMAnnotation(java.lang.String id, java.lang.String value, OPMEntityType entityAnnotationType) Creates a new OPM object.
static OPMArtifact	createOPMArtifact(java.lang.String id, java.lang.String value) Creates a new OPM object.
static OPMArtifact	createOPMArtifact(java.lang.String id, java.lang.String value, OPMEntityType entityArtifactType)
static OPMEntity	createOPMEntity(EntityType et) Creates a new OPM object.
static OPMEntity	createOPMEntity(EntityType et, java.lang.String id) Creates a new OPM object.
static OPMEntity	createOPMEntity(EntityType et, java.lang.String id, java.lang.String value) Creates a new OPM object.
static OPMEntity	createOPMEntity(EntityType et, java.lang.String id, java.lang.String value, AnnotationSet annots, Ontologies ontos) Creates a new OPM object.
static OPMEntity	createOPMEntity(EntityType et, java.lang.String id, java.lang.String value, AnnotationSet annots, Ontologies ontos, OPMEntityType entityType) Creates a new OPM object.
static OPMEntity	createOPMEntity(OPMEntityType et) Creates a new OPM object.
static OPMEntity	createOPMEntity(OPMEntityType et, java.lang.String id) Creates a new OPM object.
static OPMEntity	createOPMEntity(OPMEntityType et, java.lang.String id, java.lang.String value) Creates a new OPM object.
static OPMEntity	createOPMEntity(java.lang.String type) Creates a new OPM object.
static OPMEntity	createOPMEntity(java.lang.String type, java.lang.String id) Creates a new OPM object.
static OPMEntity	createOPMEntity(java.lang.String type, java.lang.String id, java.lang.String value) Creates a new OPM object.
static OPMEntity	createOPMEntity(java.lang.String type, java.lang.String id, java.lang.String value, AnnotationSet annots, Ontologies ontos) Creates a new OPM object.
static OPMGraph	createOPMGraph() Creates a new OPM object.
static OPMGraph	createOPMGraph(java.lang.String id, java.lang.String value) Creates a new OPM object.
static OPMGraph	createOPMGraph(java.lang.String id, java.lang.String value, OPMEntityType entityGraphType) Creates a new OPM object.
static OPMProcess	createOPMProcess(java.lang.String id, java.lang.String value) Creates a new OPM object.
static OPMProcess	createOPMProcess(java.lang.String id, java.lang.String value, OPMEntityType entityProcessType)
static ProcessStatus	createProcessStatus(java.lang.String processStatus, java.lang.String desc) Creates a new OPM object.
static Property	createProperty(Ontology ontology, java.lang.String iriproperty) Creates a new OPM object.
static java.lang.String	generateSVG(OPMGraph g) Generate svg.
static java.lang.String	generateSVG(OPMGraph g, java.util.HashMap<java.lang.String,java.lang.String> acronyms)
static java.lang.String	generateSVG(OPMGraph g, java.util.HashSet<java.lang.String> entitiesURITohighligh, ProvenanceServer server, java.util.HashMap<java.lang.String,java.lang.String> acronyms) Generate svg.
static DependenceType	getDependenceType(OPMEntityNode entityCause, OPMEntityNode entityEffect)
static EntityType	getEntityType(OPMEntityNode etemplate) Gets the entity type.
static java.util.Collection<? extends OPMEntity>	getRelatedEntities(OPMEntity e, java.util.HashSet<java.lang.String> entityURIs, ProvenanceServer provenanceServer) Gets the related entities.
static java.util.Collection<? extends OPMEntity>	getRelatedEntities(OPMEntity e, java.util.HashSet<java.lang.String> entityURIs, ProvenanceServer provenanceServer, java.util.HashSet<OPMEntity> reviewed) Gets the related entities.
static void	initializeopmDependenceTypes(java.util.Map<DependenceType,OPMDependenceType> dependenceTypeMap) Initialize the OPM dependence types.
static void	initializeopmEntityTypes(java.util.Map<EntityType,OPMEntityType> entityTypeMap) Initialize the OPM entity types.
static java.util.HashMap<OPMEntity,OPMEntity>	mergeIn_withmapping(OPMGraph g1, OPMGraph g2, java.util.HashMap<OPMEntity,OPMEntity> currMapping, boolean updateGraphLinks) Merge in_withmapping.
static OPMGraph	mergeIn(OPMGraph g1, OPMGraph g2, boolean updateGraphLinks) Merge in.
static OPMEntity	simpleClone(OPMEntity e)
static OPMEntity	simpleClone(OPMEntity e, boolean addAnnotations) Simple clone.
static java.lang.String	toDOT(OPMGraph g, java.util.HashSet<java.lang.String> entitiesURITohighligh, ProvenanceServer server, java.util.HashMap<java.lang.String,java.lang.String> accronyms) To dot.
static java.lang.String	toString(OPMGraph g) To string.

Methods inherited from class java.lang.Object

equals, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Field Detail

DEFAULT_ONTO

public static Ontology DEFAULT_ONTO

The default ontology object.

UNKNOWN_ID

public static java.lang.String UNKNOWN_ID

The unknown id.

UNKNOWN_VALUE

public static java.lang.String UNKNOWN_VALUE

The unknown value.

ENTITY_TYPE_SIZE

public static final int ENTITY_TYPE_SIZE

The Constant ENTITY_TYPE_SIZE.

COLORS

public static java.util.ArrayList<java.lang.String> COLORS

opmEntityTypes

public static java.util.Map<EntityType,OPMEntityType> opmEntityTypes

The OPM entity types.

opmDependenceTypes

public static java.util.Map<DependenceType,OPMDependenceType> opmDependenceTypes

The OPM dependence types.

opmClasses

public static java.util.HashMap<EntityType,java.lang.Class> opmClasses

The OPM classes.

Constructor Detail

OPMFactory

public OPMFactory()

Method Detail

initializeopmEntityTypes

public static void initializeopmEntityTypes(java.util.Map<EntityType,OPMEntityType> entityTypeMap)

Initialize the OPM entity types.

Parameters:

entityTypeMap: - the entity type map

initializeopmDependenceTypes

public static void initializeopmDependenceTypes(java.util.Map<DependenceType,OPMDependenceType> dependenceTypeMap)

Initialize the OPM dependence types.

Parameters:

dependenceTypeMap - the dependence type map

createEntityType

public static OPMEntityType createEntityType(EntityType et)

Creates a new OPM object.

Parameters:

et: - the entity type of the object to create

Returns:

the OPM entity type

createDependenceType

public static OPMDependenceType createDependenceType(DependenceType dt)

Creates a new OPM object.

Parameters:

dt: - the dependence type of the object to create

Returns:

the OPM dependence type

createOPMEntity

public static OPMEntity createOPMEntity(java.lang.String type,
                        java.lang.String id,
                        java.lang.String value,
                        AnnotationSet annots,
                        Ontologies ontos)

Creates a new OPM object.

Parameters:

type - the type

id - the id

value - the value

annots - the annots

Returns:

the OPM entity

createOPMEntity

public static OPMEntity createOPMEntity(java.lang.String type,
                        java.lang.String id,
                        java.lang.String value)

Creates a new OPM object.

Parameters:

type - the type

id - the id

value - the value

Returns:

the OPM entity

createOPMEntity

public static OPMEntity createOPMEntity(java.lang.String type,
                        java.lang.String id)

Creates a new OPM object.

Parameters:

type - the type

id - the id

Returns:

the OPM entity

createOPMEntity

public static OPMEntity createOPMEntity(java.lang.String type)

Creates a new OPM object.

Parameters:

type - the type

Returns:

the OPM entity

createOPMEntity

public static OPMEntity createOPMEntity(EntityType et,
                        java.lang.String id,
                        java.lang.String value)

Creates a new OPM object.

Parameters:

et - the et

id - the id

value - the value

Returns:

the OPM entity

createOPMEntity

public static OPMEntity createOPMEntity(OPMEntityType et,
                        java.lang.String id,
                        java.lang.String value)
                                 throws java.lang.Exception

Creates a new OPM object.

Parameters:

et - the et

id - the id

value - the value

Returns:

the OPM entity

Throws:

java.lang.Exception

createOPMEntity

public static OPMEntity createOPMEntity(EntityType et,
                        java.lang.String id)

Creates a new OPM object.

Parameters:

et - the et

id - the id

Returns:

the OPM entity

createOPMEntity

public static OPMEntity createOPMEntity(OPMEntityType et,
                        java.lang.String id)
                                 throws java.lang.Exception

Creates a new OPM object.

Parameters:

et - the et

id - the id

Returns:

the OPM entity

Throws:

java.lang.Exception

createOPMEntity

public static OPMEntity createOPMEntity(EntityType et)

Creates a new OPM object.

Parameters:

et - the et

Returns:

the OPM entity

createOPMEntity

public static OPMEntity createOPMEntity(OPMEntityType et)
                                 throws java.lang.Exception

Creates a new OPM object.

Parameters:

et - the et

Returns:

the OPM entity

Throws:

java.lang.Exception

createOPMEntity

public static OPMEntity createOPMEntity(EntityType et,
                        java.lang.String id,
                        java.lang.String value,
                        AnnotationSet annots,
                        Ontologies ontos)

Creates a new OPM object.

Parameters:

et - the et

id - the id

value - the value

annots - the annots

Returns:

the OPM entity

Throws:

java.lang.Exception

createOPMEntity

public static OPMEntity createOPMEntity(EntityType et,
                        java.lang.String id,
                        java.lang.String value,
                        AnnotationSet annots,
                        Ontologies ontos,
                        OPMEntityType entityType)
                                 throws java.lang.Exception

Creates a new OPM object.

Parameters:

et - the et

id - the id

value - the value

annots - the annots

Returns:

the OPM entity

Throws:

java.lang.Exception

createOPMArtifact

public static OPMArtifact createOPMArtifact(java.lang.String id,
                            java.lang.String value)

Creates a new OPM object.

Parameters:

id - the id

value - the value

Returns:

the OPM artifact

createOPMArtifact

public static OPMArtifact createOPMArtifact(java.lang.String id,
                            java.lang.String value,
                            OPMEntityType entityArtifactType)
                                     throws java.lang.Exception

Throws:

java.lang.Exception

createOPMProcess

public static OPMProcess createOPMProcess(java.lang.String id,
                          java.lang.String value)

Creates a new OPM object.

Parameters:

id - the id

value - the value

Returns:

the OPM process

createOPMProcess

public static OPMProcess createOPMProcess(java.lang.String id,
                          java.lang.String value,
                          OPMEntityType entityProcessType)
                                   throws java.lang.Exception

Throws:

java.lang.Exception

createOPMAgent

public static OPMAgent createOPMAgent(java.lang.String id,
                      java.lang.String value)

Creates a new OPM object.

Parameters:

id - the id

value - the value

Returns:

the OPM agent

createOPMAgent

public static OPMAgent createOPMAgent(java.lang.String id,
                      java.lang.String value,
                      OPMEntityType entityAgentType)
                               throws java.lang.Exception

Throws:

java.lang.Exception

createOPMAccount

public static OPMAccount createOPMAccount(java.lang.String id,
                          java.lang.String value)

Creates a new OPM object.

Parameters:

id - the id

value - the value

Returns:

the OPM account

createOPMAccount

public static OPMAccount createOPMAccount(java.lang.String id,
                          java.lang.String value,
                          OPMEntityType entityAccountType)
                                   throws java.lang.Exception

Creates a new OPM object.

Parameters:

id - the id

value - the value

Returns:

the OPM account

Throws:

java.lang.Exception

createOPMGraph

public static OPMGraph createOPMGraph(java.lang.String id,
                      java.lang.String value)

Creates a new OPM object.

Parameters:

id - the id

value - the value

Returns:

the OPM graph

createOPMGraph

public static OPMGraph createOPMGraph(java.lang.String id,
                      java.lang.String value,
                      OPMEntityType entityGraphType)
                               throws java.lang.Exception

Creates a new OPM object.

Parameters:

id - the id

value - the value

Returns:

the OPM graph

Throws:

java.lang.Exception

createOPMAnnotation

public static OPMAnnotation createOPMAnnotation(java.lang.String id,
                                java.lang.String value)

Creates a new OPM object.

Parameters:

id - the id

value - the value

Returns:

the OPM annotation

createOPMAnnotation

public static OPMAnnotation createOPMAnnotation(java.lang.String id,
                                java.lang.String value,
                                OPMEntityType entityAnnotationType)
                                         throws java.lang.Exception

Creates a new OPM object.

Parameters:

id - the id

value - the value

Returns:

the OPM annotation

Throws:

java.lang.Exception

createOPMGraph

public static OPMGraph createOPMGraph()

Creates a new OPM object.

Returns:

the OPM graph

addOPMEntityToGraph

public static void addOPMEntityToGraph(OPMGraph g,
                       OPMEntity entity)

Adds the opm entity to graph.

Parameters:

g - the g

entity - the entity

createOntology

public static Ontology createOntology(java.lang.String ontologyName,
                      java.lang.String ontologyId,
                      java.lang.String ontologyVersion)

Creates a new OPM object.

Parameters:

ontologyName - the ontology name

ontologyId - the ontology id

ontologyVersion - the ontology version

Returns:

the ontology

createProperty

public static Property createProperty(Ontology ontology,
                      java.lang.String iriproperty)

Creates a new OPM object.

Parameters:

ontology - the ontology

iriproperty - the iriproperty

Returns:

the property

createDependence

public static OPMDependence createDependence(OPMEntityNode entityCause,
                             OPMEntityNode entityEffect)
                                      throws java.lang.Exception

Creates a new OPM object.

Parameters:

entityCause - the entity cause

entityEffect - the entity effect

Returns:

the OPM dependence

Throws:

java.lang.Exception - the exception

getDependenceType

public static DependenceType getDependenceType(OPMEntityNode entityCause,
                               OPMEntityNode entityEffect)
                                        throws java.lang.Exception

Throws:

java.lang.Exception

createDependence

public static OPMDependence createDependence(OPMEntityNode entityCause,
                             OPMEntityNode entityEffect,
                             java.lang.String id,
                             java.lang.String value,
                             boolean updateLinks)
                                      throws java.lang.Exception

Creates a new OPM object.

Parameters:

entityCause - the entity cause

entityEffect - the entity effect

id - the id

value - the value

Returns:

the OPM dependence

Throws:

java.lang.Exception - the exception

createDependence

public static OPMDependence createDependence(OPMEntityNode entityCause,
                             OPMEntityNode entityEffect,
                             java.lang.String id,
                             java.lang.String value,
                             OPMDependenceType deptype,
                             OPMEntityType entityDependenceType)
                                      throws java.lang.Exception

Creates a new OPM object.

Parameters:

entityCause - the entity cause

entityEffect - the entity effect

id - the id

value - the value

Returns:

the OPM dependence

Throws:

java.lang.Exception - the exception

createDependence

public static OPMDependence createDependence(OPMEntityNode entityCause,
                             OPMEntityNode entityEffect,
                             java.lang.String id,
                             java.lang.String value,
                             OPMDependenceType deptype,
                             OPMEntityType entityDependenceType,
                             boolean linkDepCauseEffect)
                                      throws java.lang.Exception

Creates a new OPM object.

Parameters:

entityCause - the entity cause

entityEffect - the entity effect

id - the id

value - the value

Returns:

the OPM dependence

Throws:

java.lang.Exception - the exception

addAnnotation

public static OPMAnnotation addAnnotation(OPMEntity subjectEntity,
                          java.lang.String iriproperty,
                          Ontologies ontos,
                          java.lang.String value)
                                   throws java.lang.Exception

Throws:

java.lang.Exception

addAnnotation

public static OPMAnnotation addAnnotation(OPMEntity subjectEntity,
                          Property prop,
                          java.lang.String value)

Adds the annotation.

Parameters:

subjectEntity - the subject entity

prop - the prop

value - the value

Returns:

the oPM annotation

addAnnotation

public static OPMAnnotation addAnnotation(OPMEntity subjectEntity,
                          Property prop,
                          java.lang.String value,
                          boolean recreateEntityType)

addAnnotation

public static OPMAnnotation addAnnotation(OPMEntity subjectEntity,
                          Property prop,
                          java.lang.String value,
                          OPMEntityType entityType,
                          boolean updateLinks)

toString

public static java.lang.String toString(OPMGraph g)

To string.

Parameters:

g - the g

Returns:

the string

cloneGraph

public static OPMGraph cloneGraph(OPMGraph g,
                  java.util.HashMap<OPMEntity,OPMEntity> cloneMap)
                           throws java.lang.Exception

Clone graph.

Parameters:

g - the g

cloneMap - the clone map

Returns:

the oPM graph

Throws:

java.lang.Exception - the exception

cloneGraph

public static OPMGraph cloneGraph(OPMGraph g,
                  java.util.HashSet<OPMEntity> includedEntities)
                           throws java.lang.Exception

Clone graph.

Parameters:

g - the g

includedEntities - the included entities

Returns:

the oPM graph

Throws:

java.lang.Exception - the exception

mergeIn

public static OPMGraph mergeIn(OPMGraph g1,
               OPMGraph g2,
               boolean updateGraphLinks)
                        throws java.lang.Exception

Merge in.

Parameters:

g1 - the g1

g2 - the g2

Returns:

the oPM graph

Throws:

java.lang.Exception - the exception

mergeIn_withmapping

public static java.util.HashMap<OPMEntity,OPMEntity> mergeIn_withmapping(OPMGraph g1,
                                                         OPMGraph g2,
                                                         java.util.HashMap<OPMEntity,OPMEntity> currMapping,
                                                         boolean updateGraphLinks)
                                                                  throws java.lang.Exception

Merge in_withmapping.

Parameters:

g1 - the g1

g2 - the g2

currMapping - the curr mapping

Returns:

the hash map

Throws:

java.lang.Exception - the exception

simpleClone

public static OPMEntity simpleClone(OPMEntity e,
                    boolean addAnnotations)
                             throws java.lang.Exception

Simple clone.

Parameters:

e - the e

Returns:

the OPM entity

Throws:

java.lang.Exception

simpleClone

public static OPMEntity simpleClone(OPMEntity e)
                             throws java.lang.Exception

Throws:

java.lang.Exception

cloneAnnotationOf

public static void cloneAnnotationOf(OPMEntity e1,
                     OPMAnnotation a)

Clone annotation of.

Parameters:

e1 - the e1

a - the a

clone

public static OPMEntity clone(OPMEntity e)
                       throws java.lang.Exception

Clone.

Parameters:

e - the e

Returns:

the oPM entity

Throws:

java.lang.Exception - the exception

clone

public static OPMEntity clone(OPMEntity e,
              java.util.HashMap<OPMEntity,OPMEntity> cloneMap)
                       throws java.lang.Exception

Clone.

Parameters:

e - the e

cloneMap - the clone map

Returns:

the oPM entity

Throws:

java.lang.Exception - the exception

cloneArtifact

public static OPMArtifact cloneArtifact(OPMArtifact e,
                        java.util.HashMap<OPMEntity,OPMEntity> cloneMap)
                                 throws java.lang.Exception

Clone artifact.

Parameters:

e - the e

cloneMap - the clone map

Returns:

the oPM artifact

Throws:

java.lang.Exception - the exception

cloneAgent

public static OPMAgent cloneAgent(OPMAgent e,
                  java.util.HashMap<OPMEntity,OPMEntity> cloneMap)
                           throws java.lang.Exception

Clone agent.

Parameters:

e - the e

cloneMap - the clone map

Returns:

the oPM agent

Throws:

java.lang.Exception - the exception

cloneProcess

public static OPMProcess cloneProcess(OPMProcess e,
                      java.util.HashMap<OPMEntity,OPMEntity> cloneMap)
                               throws java.lang.Exception

Clone process.

Parameters:

e - the e

cloneMap - the clone map

Returns:

the oPM process

Throws:

java.lang.Exception - the exception

cloneOPMEntity

public static OPMEntity cloneOPMEntity(OPMEntity e,
                       java.util.HashMap<OPMEntity,OPMEntity> cloneMap)
                                throws java.lang.Exception

Clone opm entity.

Parameters:

e - the e

cloneMap - the clone map

Returns:

the oPM entity

Throws:

java.lang.Exception - the exception

clone

public static OPMEntityType clone(OPMEntityType et)

Clone.

Parameters:

et - the et

Returns:

the oPM entity type

cloneAccount

public static OPMAccount cloneAccount(OPMAccount acc,
                      java.util.HashMap<OPMEntity,OPMEntity> cloneMap)
                               throws java.lang.Exception

Clone account.

Parameters:

acc - the acc

cloneMap - the clone map

Returns:

the oPM account

Throws:

java.lang.Exception - the exception

cloneAnnotation

public static OPMAnnotation cloneAnnotation(OPMAnnotation ann,
                            java.util.HashMap<OPMEntity,OPMEntity> cloneMap)
                                     throws java.lang.Exception

Clone annotation.

Parameters:

ann - the ann

cloneMap - the clone map

Returns:

the oPM annotation

Throws:

java.lang.Exception - the exception

cloneDependence

public static OPMDependence cloneDependence(OPMDependence dep)
                                     throws java.lang.Exception

Clone dependence.

Parameters:

dep - the dep

Returns:

the oPM dependence

Throws:

java.lang.Exception - the exception

cloneDependence

public static OPMDependence cloneDependence(OPMDependence dep,
                            java.util.HashMap<OPMEntity,OPMEntity> cloneMap)
                                     throws java.lang.Exception

Clone dependence.

Parameters:

dep - the dep

cloneMap - the clone map

Returns:

the oPM dependence

Throws:

java.lang.Exception - the exception

createProcessStatus

public static ProcessStatus createProcessStatus(java.lang.String processStatus,
                                java.lang.String desc)

Creates a new OPM object.

Parameters:

processStatus - the process status

desc - the desc

Returns:

the process status

createAnnotation

public static OPMAnnotation createAnnotation(OPMEntity entity,
                             Property p,
                             java.lang.String value)

Creates a new OPM object.

Parameters:

entity - the entity

p - the p

value - the value

Returns:

the OPM annotation

convertToOPMAnnotations

public static java.util.HashSet<OPMAnnotation> convertToOPMAnnotations(OPMEntity entity,
                                                       AnnotationSet annotations,
                                                       Ontologies ontologies)

Convert to opm annotations.

Parameters:

entity - the entity

annotations - the annotations

ontologies - the ontologies

Returns:

the hash set

getEntityType

public static EntityType getEntityType(OPMEntityNode etemplate)

Gets the entity type.

Parameters:

etemplate - the etemplate

Returns:

the entity type

addAnnotations

public static void addAnnotations(OPMEntity entity,
                  AnnotationSet annotations,
                  Ontologies ontologies)

Adds the annotations.

Parameters:

entity - the entity

annotations - the annotations

ontologies - the ontologies

toDOT

public static java.lang.String toDOT(OPMGraph g,
                     java.util.HashSet<java.lang.String> entitiesURITohighligh,
                     ProvenanceServer server,
                     java.util.HashMap<java.lang.String,java.lang.String> accronyms)
                              throws java.lang.Exception

To dot.

Parameters:

g - the g

entitiesURITohighligh - the entities uri tohighligh

server - the server

Returns:

the string

Throws:

java.lang.Exception - the exception

generateSVG

public static java.lang.String generateSVG(OPMGraph g)
                                    throws java.lang.Exception

Generate svg.

Parameters:

g - the g

Returns:

the string

Throws:

java.lang.Exception - the exception

generateSVG

public static java.lang.String generateSVG(OPMGraph g,
                           java.util.HashMap<java.lang.String,java.lang.String> acronyms)
                                    throws java.lang.Exception

Throws:

java.lang.Exception

generateSVG

public static java.lang.String generateSVG(OPMGraph g,
                           java.util.HashSet<java.lang.String> entitiesURITohighligh,
                           ProvenanceServer server,
                           java.util.HashMap<java.lang.String,java.lang.String> acronyms)
                                    throws java.lang.Exception

Generate svg.

Parameters:

g - the g

entitiesURITohighligh - the entities uri tohighligh

server - the server

Returns:

the string

Throws:

java.lang.Exception - the exception

getRelatedEntities

public static java.util.Collection<? extends OPMEntity> getRelatedEntities(OPMEntity e,
                                                           java.util.HashSet<java.lang.String> entityURIs,
                                                           ProvenanceServer provenanceServer)

Gets the related entities.

Parameters:

e - the e

entityURIs - the entity uri is

provenanceServer - the provenance server

Returns:

the related entities

getRelatedEntities

public static java.util.Collection<? extends OPMEntity> getRelatedEntities(OPMEntity e,
                                                           java.util.HashSet<java.lang.String> entityURIs,
                                                           ProvenanceServer provenanceServer,
                                                           java.util.HashSet<OPMEntity> reviewed)

Gets the related entities.

Parameters:

e - the e

entityURIs - the entity ur is

provenanceServer - the provenance server

reviewed - the reviewed

Returns:

the related entities