- AbstractOnto - Class in eu.transformproject.provenance.reasoning
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- AbstractOnto(String) - Constructor for class eu.transformproject.provenance.reasoning.AbstractOnto
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- AbstractOnto(IRI) - Constructor for class eu.transformproject.provenance.reasoning.AbstractOnto
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- AbstractOnto(IRI, String) - Constructor for class eu.transformproject.provenance.reasoning.AbstractOnto
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- AbstractOnto() - Constructor for class eu.transformproject.provenance.reasoning.AbstractOnto
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- AccessibleResourceMetadata - Class in eu.transformproject.provenance.resources
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This class provides a default implementation for describing any king of resources
whose provenance has been capture through this API.
- AccessibleResourceMetadata() - Constructor for class eu.transformproject.provenance.resources.AccessibleResourceMetadata
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- AccessibleResourcesMetadataDB - Class in eu.transformproject.provenance.resources
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This class provide all the necessary methods for updating the accessible
resources described on the opm graphs in tables in the provenance store.
- AccessibleResourcesMetadataDB() - Constructor for class eu.transformproject.provenance.resources.AccessibleResourcesMetadataDB
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- ACCOUNT - Static variable in class eu.transformproject.provenance.service.ProvenanceServer
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- ACCOUNT_URI - Static variable in class eu.transformproject.provenance.service.ProvenanceServer
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- add(String) - Method in class eu.transformproject.provenance.representation.OPMGraphInstantiationSpec
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- add(String, String) - Method in class eu.transformproject.provenance.representation.OPMGraphInstantiationSpec
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- add(String[]) - Method in class eu.transformproject.provenance.representation.OPMGraphInstantiationSpec
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- add(TemplateDeploySpec) - Method in class eu.transformproject.provenance.representation.OPMGraphInstantiationSpec
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- add(TemplateLinkSpec) - Method in class eu.transformproject.provenance.representation.OPMGraphInstantiationSpec
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- add(TemplateEqualSpec) - Method in class eu.transformproject.provenance.representation.OPMGraphInstantiationSpec
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- add(ObservedPath) - Method in class eu.transformproject.provenance.representation.OPMGraphInstantiationSpec
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- add(TemplateGroupExecutionSpec) - Method in class eu.transformproject.provenance.representation.OPMGraphTemplate
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- add(TemplateNodeDeploySpec) - Method in class eu.transformproject.provenance.representation.TemplateDeploySpec
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- add(TemplateGroupDeploySpec) - Method in class eu.transformproject.provenance.representation.TemplateDeploySpec
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- addAnnotation(OPMEntity, String, Ontologies, String) - Static method in class eu.transformproject.provenance.opm.factory.OPMFactory
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- addAnnotation(OPMEntity, Property, String) - Static method in class eu.transformproject.provenance.opm.factory.OPMFactory
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Adds the annotation.
- addAnnotation(OPMEntity, Property, String, boolean) - Static method in class eu.transformproject.provenance.opm.factory.OPMFactory
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- addAnnotation(OPMEntity, Property, String, OPMEntityType, boolean) - Static method in class eu.transformproject.provenance.opm.factory.OPMFactory
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- addAnnotation(String, String) - Method in class eu.transformproject.provenance.representation.AnnotationSet
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- addAnnotation(String, String, String) - Method in class eu.transformproject.provenance.service.ProvenanceServer
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- addAnnotation(OPMEntity, String, String) - Method in class eu.transformproject.provenance.service.ProvenanceServer
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- addAnnotation(String, String, String) - Method in interface eu.transformproject.provenance.service.ProvenanceStorageInterface
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Adds an annotation to an entity or a dependence, owl_prop is the property to annotate which must appear in the ontology profile
(or set of domain-user ontologies) associated to the server, the value associated to the property is value.
- addAnnotation(String, String, String, String) - Method in class eu.transformproject.provenance.storage.ProvenanceDBStorage
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- addAnnotation(OPMEntity, String, String) - Method in class eu.transformproject.provenance.storage.ProvenancePersistenceManager
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- addAnnotation(String, String, String) - Method in class eu.transformproject.provenance.storage.ProvenancePersistenceManager
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- addAnnotation(OPMEntity, Property, String) - Method in class eu.transformproject.provenance.storage.ProvenancePersistenceManager
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- addAnnotations(OPMEntity, AnnotationSet, Ontologies) - Static method in class eu.transformproject.provenance.opm.factory.OPMFactory
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Adds the annotations.
- addAnnotations(String, AnnotationSet) - Method in class eu.transformproject.provenance.service.ProvenanceServer
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- addAnnotations(String, AnnotationSet) - Method in interface eu.transformproject.provenance.service.ProvenanceStorageInterface
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- addAnnotations(String, AnnotationSet) - Method in class eu.transformproject.provenance.storage.ProvenancePersistenceManager
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- addCausalDependence(String, String, String) - Method in class eu.transformproject.provenance.service.ProvenanceServer
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- addCausalDependence(String, String) - Method in class eu.transformproject.provenance.service.ProvenanceServer
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- addCausalDependence(OPMEntityNode, OPMEntityNode) - Method in class eu.transformproject.provenance.service.ProvenanceServer
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- addCausalDependence(String, String, String) - Method in interface eu.transformproject.provenance.service.ProvenanceStorageInterface
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Defines a causal dependence from the entity uriEntityDest to uriEntityCause in the graph idGraph.
- addCausalDependence(String, String) - Method in interface eu.transformproject.provenance.service.ProvenanceStorageInterface
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As the previous method but the causal dependences to create must correspond with one of the five defined in \cite{Moreau2010}.
- addCausalDependence(String, String, String) - Method in class eu.transformproject.provenance.storage.ProvenancePersistenceManager
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- addCausalDependence(String, String) - Method in class eu.transformproject.provenance.storage.ProvenancePersistenceManager
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- addCausalDependence(OPMEntityNode, OPMEntityNode) - Method in class eu.transformproject.provenance.storage.ProvenancePersistenceManager
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- addCause(String, String, String, String) - Method in class eu.transformproject.provenance.storage.ProvenanceDBStorage
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- addEffect(String, String, String, String) - Method in class eu.transformproject.provenance.storage.ProvenanceDBStorage
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- addLinks(OPMEntityNode, OPMGraph, ArrayList<TemplateGroupDeploymentDesc>) - Method in class eu.transformproject.provenance.representation.TemplateDeploySpec
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- addLinks(OPMEntityNode, OPMGraph, ArrayList<TemplateGroupDeploymentDesc>, HashMap<TemplateGroupDeploymentDesc, Integer>) - Method in class eu.transformproject.provenance.representation.TemplateDeploySpec
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- addLinksBetweenTemplates(OPMGraph) - Method in class eu.transformproject.provenance.representation.InstantiationDesc
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- addLogHandler() - Static method in class eu.transformproject.provenance.service.ProvenanceAdmin
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- addNode(OPMEntityNode, OPMEntityNode) - Method in class eu.transformproject.provenance.representation.TemplateDeploymentDesc
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- addNode(OPMEntityNode, OPMEntityNode) - Method in class eu.transformproject.provenance.representation.TemplateGroupDeploymentDesc
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- addNode(OPMEntityNode, boolean) - Static method in class eu.transformproject.provenance.utils.SVGWriter
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- addNode(OPMEntityNode, boolean) - Static method in class eu.transformproject.provenance.utils.SVGWriter_old
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- addOnto(IRI) - Method in class eu.transformproject.provenance.reasoning.inProvStore.UpdatableOntologies
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- addOnto(boolean, IRI) - Method in class eu.transformproject.provenance.reasoning.inProvStore.UpdatableOntologies
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- addOnto(String, IRI) - Method in class eu.transformproject.provenance.reasoning.inProvStore.UpdatableOntologies
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- addOnto(boolean, String, IRI) - Method in class eu.transformproject.provenance.reasoning.inProvStore.UpdatableOntologies
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- addOnto(IRI) - Method in class eu.transformproject.provenance.reasoning.Ontologies
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- addOnto(String, IRI) - Method in class eu.transformproject.provenance.reasoning.Ontologies
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- addOnto(IRI) - Method in class eu.transformproject.provenance.reasoning.Ontologies_old
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- addOnto(String, IRI) - Method in class eu.transformproject.provenance.reasoning.Ontologies_old
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- addOPMEntityToGraph(OPMGraph, OPMEntity) - Static method in class eu.transformproject.provenance.opm.factory.OPMFactory
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Adds the opm entity to graph.
- addOPMEntityToGraph(OPMGraph, OPMEntity) - Method in class eu.transformproject.provenance.service.ProvenanceServer
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- addOPMEntityToGraph(OPMGraph, OPMEntity) - Method in class eu.transformproject.provenance.storage.ProvenancePersistenceManager
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- addRDFTypeAnnotation(String, Ontologies, String) - Method in class eu.transformproject.provenance.representation.OPMGraphTemplate
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- addTemplateDeployment(TemplateDeploymentDesc) - Method in class eu.transformproject.provenance.representation.InstantiationDesc
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- AGENT - Static variable in class eu.transformproject.provenance.service.ProvenanceServer
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- AGENT_URI - Static variable in class eu.transformproject.provenance.service.ProvenanceServer
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- aggregateResultsForMultiSourceQuery(String, String, Object[], Object, Date) - Method in interface eu.transformproject.provenance.ws.ProvenanceWS_middleware_Interface
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aggregateResultsForMultiSourceQuery, annotates the aggregation result process at the moment it finishes.
- aggregateResultsForMultiSourceQuery(String, String, Object[], Object, Date) - Method in class eu.transformproject.provenance.ws.ProvenanceWS_MiddlewareTool
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- agregateLocalQueryECResults(String, int, List, Date) - Method in class eu.transformproject.provenance.ws.ProvenanceWS_QueryTool
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- agregateLocalQueryECResults(String, int, List, Date) - Method in interface eu.transformproject.provenance.ws.ProvenanceWS_QueryTool_Interface
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agregateLocalQueryECResults.
- allowAnnotationUpdating(OPMEntity) - Method in class eu.transformproject.provenance.service.ProvenanceServer
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- allowDependenceUpdating(OPMEntityNode) - Method in class eu.transformproject.provenance.service.ProvenanceServer
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- analizeMultiSourceQuery(String, String[], String, Date) - Method in interface eu.transformproject.provenance.ws.ProvenanceWS_middleware_Interface
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analizeMultiSourceQuery, annotates the process of analyzing multisource queries at the moment the analysis has finished.
- analizeMultiSourceQuery(String, String[], String, Date) - Method in class eu.transformproject.provenance.ws.ProvenanceWS_MiddlewareTool
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- ANNOTATION - Static variable in class eu.transformproject.provenance.service.ProvenanceServer
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- ANNOTATION_TABLE_PLACEHOLDER - Static variable in class eu.transformproject.provenance.query.ProvenanceQueryBasic
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- ANNOTATION_URI - Static variable in class eu.transformproject.provenance.service.ProvenanceServer
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- AnnotationSet - Class in eu.transformproject.provenance.representation
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Class AnnotationSet.
- AnnotationSet() - Constructor for class eu.transformproject.provenance.representation.AnnotationSet
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- ARTIFACT - Static variable in class eu.transformproject.provenance.service.ProvenanceServer
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- ARTIFACT_URI - Static variable in class eu.transformproject.provenance.service.ProvenanceServer
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- asDoc() - Method in class eu.transformproject.provenance.service.ProvenanceStore
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- associateToAccount(String, String) - Method in class eu.transformproject.provenance.service.ProvenanceServer
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- associateToAccount(String, String) - Method in interface eu.transformproject.provenance.service.ProvenanceStorageInterface
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Specify an account for which an specific OPM entity can be viewed.
- associateToAccount(String, String) - Method in class eu.transformproject.provenance.storage.ProvenancePersistenceManager
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- AUTOINCFIELD_PLACEHOLDER - Static variable in class eu.transformproject.provenance.query.ProvenanceQueryBasic
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