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A

AbstractOnto - Class in eu.transformproject.provenance.reasoning
 
AbstractOnto(String) - Constructor for class eu.transformproject.provenance.reasoning.AbstractOnto
 
AbstractOnto(IRI) - Constructor for class eu.transformproject.provenance.reasoning.AbstractOnto
 
AbstractOnto(IRI, String) - Constructor for class eu.transformproject.provenance.reasoning.AbstractOnto
 
AbstractOnto() - Constructor for class eu.transformproject.provenance.reasoning.AbstractOnto
 
AccessibleResourceMetadata - Class in eu.transformproject.provenance.resources
This class provides a default implementation for describing any king of resources whose provenance has been capture through this API.
AccessibleResourceMetadata() - Constructor for class eu.transformproject.provenance.resources.AccessibleResourceMetadata
 
AccessibleResourcesMetadataDB - Class in eu.transformproject.provenance.resources
This class provide all the necessary methods for updating the accessible resources described on the opm graphs in tables in the provenance store.
AccessibleResourcesMetadataDB() - Constructor for class eu.transformproject.provenance.resources.AccessibleResourcesMetadataDB
 
ACCOUNT - Static variable in class eu.transformproject.provenance.service.ProvenanceServer
 
ACCOUNT_URI - Static variable in class eu.transformproject.provenance.service.ProvenanceServer
 
add(String) - Method in class eu.transformproject.provenance.representation.OPMGraphInstantiationSpec
 
add(String, String) - Method in class eu.transformproject.provenance.representation.OPMGraphInstantiationSpec
 
add(String[]) - Method in class eu.transformproject.provenance.representation.OPMGraphInstantiationSpec
 
add(TemplateDeploySpec) - Method in class eu.transformproject.provenance.representation.OPMGraphInstantiationSpec
 
add(TemplateLinkSpec) - Method in class eu.transformproject.provenance.representation.OPMGraphInstantiationSpec
 
add(TemplateEqualSpec) - Method in class eu.transformproject.provenance.representation.OPMGraphInstantiationSpec
 
add(ObservedPath) - Method in class eu.transformproject.provenance.representation.OPMGraphInstantiationSpec
 
add(TemplateGroupExecutionSpec) - Method in class eu.transformproject.provenance.representation.OPMGraphTemplate
 
add(TemplateNodeDeploySpec) - Method in class eu.transformproject.provenance.representation.TemplateDeploySpec
 
add(TemplateGroupDeploySpec) - Method in class eu.transformproject.provenance.representation.TemplateDeploySpec
 
addAnnotation(OPMEntity, String, Ontologies, String) - Static method in class eu.transformproject.provenance.opm.factory.OPMFactory
 
addAnnotation(OPMEntity, Property, String) - Static method in class eu.transformproject.provenance.opm.factory.OPMFactory
Adds the annotation.
addAnnotation(OPMEntity, Property, String, boolean) - Static method in class eu.transformproject.provenance.opm.factory.OPMFactory
 
addAnnotation(OPMEntity, Property, String, OPMEntityType, boolean) - Static method in class eu.transformproject.provenance.opm.factory.OPMFactory
 
addAnnotation(String, String) - Method in class eu.transformproject.provenance.representation.AnnotationSet
 
addAnnotation(String, String, String) - Method in class eu.transformproject.provenance.service.ProvenanceServer
 
addAnnotation(OPMEntity, String, String) - Method in class eu.transformproject.provenance.service.ProvenanceServer
 
addAnnotation(String, String, String) - Method in interface eu.transformproject.provenance.service.ProvenanceStorageInterface
Adds an annotation to an entity or a dependence, owl_prop is the property to annotate which must appear in the ontology profile (or set of domain-user ontologies) associated to the server, the value associated to the property is value.
addAnnotation(String, String, String, String) - Method in class eu.transformproject.provenance.storage.ProvenanceDBStorage
 
addAnnotation(OPMEntity, String, String) - Method in class eu.transformproject.provenance.storage.ProvenancePersistenceManager
 
addAnnotation(String, String, String) - Method in class eu.transformproject.provenance.storage.ProvenancePersistenceManager
 
addAnnotation(OPMEntity, Property, String) - Method in class eu.transformproject.provenance.storage.ProvenancePersistenceManager
 
addAnnotations(OPMEntity, AnnotationSet, Ontologies) - Static method in class eu.transformproject.provenance.opm.factory.OPMFactory
Adds the annotations.
addAnnotations(String, AnnotationSet) - Method in class eu.transformproject.provenance.service.ProvenanceServer
 
addAnnotations(String, AnnotationSet) - Method in interface eu.transformproject.provenance.service.ProvenanceStorageInterface
 
addAnnotations(String, AnnotationSet) - Method in class eu.transformproject.provenance.storage.ProvenancePersistenceManager
 
addCausalDependence(String, String, String) - Method in class eu.transformproject.provenance.service.ProvenanceServer
 
addCausalDependence(String, String) - Method in class eu.transformproject.provenance.service.ProvenanceServer
 
addCausalDependence(OPMEntityNode, OPMEntityNode) - Method in class eu.transformproject.provenance.service.ProvenanceServer
 
addCausalDependence(String, String, String) - Method in interface eu.transformproject.provenance.service.ProvenanceStorageInterface
Defines a causal dependence from the entity uriEntityDest to uriEntityCause in the graph idGraph.
addCausalDependence(String, String) - Method in interface eu.transformproject.provenance.service.ProvenanceStorageInterface
As the previous method but the causal dependences to create must correspond with one of the five defined in \cite{Moreau2010}.
addCausalDependence(String, String, String) - Method in class eu.transformproject.provenance.storage.ProvenancePersistenceManager
 
addCausalDependence(String, String) - Method in class eu.transformproject.provenance.storage.ProvenancePersistenceManager
 
addCausalDependence(OPMEntityNode, OPMEntityNode) - Method in class eu.transformproject.provenance.storage.ProvenancePersistenceManager
 
addCause(String, String, String, String) - Method in class eu.transformproject.provenance.storage.ProvenanceDBStorage
 
addEffect(String, String, String, String) - Method in class eu.transformproject.provenance.storage.ProvenanceDBStorage
 
addLinks(OPMEntityNode, OPMGraph, ArrayList<TemplateGroupDeploymentDesc>) - Method in class eu.transformproject.provenance.representation.TemplateDeploySpec
 
addLinks(OPMEntityNode, OPMGraph, ArrayList<TemplateGroupDeploymentDesc>, HashMap<TemplateGroupDeploymentDesc, Integer>) - Method in class eu.transformproject.provenance.representation.TemplateDeploySpec
 
addLinksBetweenTemplates(OPMGraph) - Method in class eu.transformproject.provenance.representation.InstantiationDesc
 
addLogHandler() - Static method in class eu.transformproject.provenance.service.ProvenanceAdmin
 
addNode(OPMEntityNode, OPMEntityNode) - Method in class eu.transformproject.provenance.representation.TemplateDeploymentDesc
 
addNode(OPMEntityNode, OPMEntityNode) - Method in class eu.transformproject.provenance.representation.TemplateGroupDeploymentDesc
 
addNode(OPMEntityNode, boolean) - Static method in class eu.transformproject.provenance.utils.SVGWriter
 
addNode(OPMEntityNode, boolean) - Static method in class eu.transformproject.provenance.utils.SVGWriter_old
 
addOnto(IRI) - Method in class eu.transformproject.provenance.reasoning.inProvStore.UpdatableOntologies
 
addOnto(boolean, IRI) - Method in class eu.transformproject.provenance.reasoning.inProvStore.UpdatableOntologies
 
addOnto(String, IRI) - Method in class eu.transformproject.provenance.reasoning.inProvStore.UpdatableOntologies
 
addOnto(boolean, String, IRI) - Method in class eu.transformproject.provenance.reasoning.inProvStore.UpdatableOntologies
 
addOnto(IRI) - Method in class eu.transformproject.provenance.reasoning.Ontologies
 
addOnto(String, IRI) - Method in class eu.transformproject.provenance.reasoning.Ontologies
 
addOnto(IRI) - Method in class eu.transformproject.provenance.reasoning.Ontologies_old
 
addOnto(String, IRI) - Method in class eu.transformproject.provenance.reasoning.Ontologies_old
 
addOPMEntityToGraph(OPMGraph, OPMEntity) - Static method in class eu.transformproject.provenance.opm.factory.OPMFactory
Adds the opm entity to graph.
addOPMEntityToGraph(OPMGraph, OPMEntity) - Method in class eu.transformproject.provenance.service.ProvenanceServer
 
addOPMEntityToGraph(OPMGraph, OPMEntity) - Method in class eu.transformproject.provenance.storage.ProvenancePersistenceManager
 
addRDFTypeAnnotation(String, Ontologies, String) - Method in class eu.transformproject.provenance.representation.OPMGraphTemplate
 
addTemplateDeployment(TemplateDeploymentDesc) - Method in class eu.transformproject.provenance.representation.InstantiationDesc
 
AGENT - Static variable in class eu.transformproject.provenance.service.ProvenanceServer
 
AGENT_URI - Static variable in class eu.transformproject.provenance.service.ProvenanceServer
 
aggregateResultsForMultiSourceQuery(String, String, Object[], Object, Date) - Method in interface eu.transformproject.provenance.ws.ProvenanceWS_middleware_Interface
aggregateResultsForMultiSourceQuery, annotates the aggregation result process at the moment it finishes.
aggregateResultsForMultiSourceQuery(String, String, Object[], Object, Date) - Method in class eu.transformproject.provenance.ws.ProvenanceWS_MiddlewareTool
 
agregateLocalQueryECResults(String, int, List, Date) - Method in class eu.transformproject.provenance.ws.ProvenanceWS_QueryTool
 
agregateLocalQueryECResults(String, int, List, Date) - Method in interface eu.transformproject.provenance.ws.ProvenanceWS_QueryTool_Interface
agregateLocalQueryECResults.
allowAnnotationUpdating(OPMEntity) - Method in class eu.transformproject.provenance.service.ProvenanceServer
 
allowDependenceUpdating(OPMEntityNode) - Method in class eu.transformproject.provenance.service.ProvenanceServer
 
analizeMultiSourceQuery(String, String[], String, Date) - Method in interface eu.transformproject.provenance.ws.ProvenanceWS_middleware_Interface
analizeMultiSourceQuery, annotates the process of analyzing multisource queries at the moment the analysis has finished.
analizeMultiSourceQuery(String, String[], String, Date) - Method in class eu.transformproject.provenance.ws.ProvenanceWS_MiddlewareTool
 
ANNOTATION - Static variable in class eu.transformproject.provenance.service.ProvenanceServer
 
ANNOTATION_TABLE_PLACEHOLDER - Static variable in class eu.transformproject.provenance.query.ProvenanceQueryBasic
 
ANNOTATION_URI - Static variable in class eu.transformproject.provenance.service.ProvenanceServer
 
AnnotationSet - Class in eu.transformproject.provenance.representation
Class AnnotationSet.
AnnotationSet() - Constructor for class eu.transformproject.provenance.representation.AnnotationSet
 
ARTIFACT - Static variable in class eu.transformproject.provenance.service.ProvenanceServer
 
ARTIFACT_URI - Static variable in class eu.transformproject.provenance.service.ProvenanceServer
 
asDoc() - Method in class eu.transformproject.provenance.service.ProvenanceStore
 
associateToAccount(String, String) - Method in class eu.transformproject.provenance.service.ProvenanceServer
 
associateToAccount(String, String) - Method in interface eu.transformproject.provenance.service.ProvenanceStorageInterface
Specify an account for which an specific OPM entity can be viewed.
associateToAccount(String, String) - Method in class eu.transformproject.provenance.storage.ProvenancePersistenceManager
 
AUTOINCFIELD_PLACEHOLDER - Static variable in class eu.transformproject.provenance.query.ProvenanceQueryBasic
 
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