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TupleBinding
 parent classSchema can be accessed by an AutoMed application, using a particular
 Protocol.#executeQuery(ASG) to increase modularityActionListener interface
Aggregator
Edge struture and stores this in the database.
EventListener object
EventListener object
StandardFunctionTable)
StandardFunctionTable)
SchemaElement object.
ActionListener via this
 method
 
 The handling code should obtain the object reference of this class from the
 source object of the thrown ActionEvent.
- addListener(ActionListener) - 
Method in class uk.ac.ic.doc.automed.p2p.gui.RecordScroller
 - Register an 
ActionListener object to be notified when the user has
 moved to a new record
 
 The handling code should cast the source object of the ActionEvent
 object to RecordScroller and use the
 getSelectedObject() method to access the currently active
 record
 - addListener(CacheListener) - 
Method in class uk.ac.ic.doc.automed.p2p.PeerCache
 - Add a listener to the cache
 - addListener(P2PListener) - 
Method in class uk.ac.ic.doc.automed.p2p.son.dht.AutoMedDHTImpl
 -  
 - addListener(StateChangedListener) - 
Method in class uk.ac.ic.doc.automed.p2p.state.PeerStateHandler
 - Register an interested listener
 - addListener(DIGLoggerListener) - 
Method in class uk.ac.ic.doc.automed.reasoner.DIGLogger
 -  
 - addListener(CacheListener) - 
Method in interface uk.ac.ic.doc.automed.util.cache.Cacheable
 - Add a listener to the cache
 - addListeners() - 
Method in class uk.ac.ic.doc.automed.p2p.gui.AllSchemasFrame
 -  
 - addListeners() - 
Method in class uk.ac.ic.doc.automed.p2p.gui.MySchemasFrame
 -  
 - addListeners() - 
Method in class uk.ac.ic.doc.automed.p2p.gui.SchemaInfoFrame
 -  
 - addListenerToComponent() - 
Method in class uk.ac.ic.doc.automed.editor.IDTool
 -  
 - addListenerToComponent() - 
Method in class uk.ac.ic.doc.automed.editor.PatternWritingTool
 -  
 - addListenerToComponentInPatternWindow() - 
Method in class uk.ac.ic.doc.automed.editor.PatternWritingTool
 -  
 - addLogReceiverHandler(LogThread) - 
Method in class uk.ac.ic.doc.automed.p2p.son.dht.AutoMedDHTImpl
 - Register a handler for log messages
 - addLookUpWithFilterHandler() - 
Method in class uk.ac.ic.doc.automed.p2p.qproc.planner.QPlannerMain
 - Add a handler to handle look-up with filter function
 - addMain(Object, HTMLObjectListViewer.Descriptor, boolean) - 
Method in class uk.ac.ic.doc.automed.p2p.gui.ObjectBrowser
 - Add a record to the main viewer of the browser
 - addMainClass(Class) - 
Method in class uk.ac.ic.doc.automed.p2p.tree.Root
 -  
 - addmapping - 
Variable in class uk.ac.ic.doc.automed.modelmanagement.mapping.MappingTranslate
 -  
 - addMapping(Edge, HDMGraph) - 
Method in class uk.ac.ic.doc.automed.p2p.qproc.planner.QueryPlannerResult
 -  
 - addMappings(Object, Collection) - 
Method in class uk.ac.ic.doc.automed.p2p.qproc.planner.QueryPlannerResult
 -  
 - addMappings(Object, Collection, boolean) - 
Method in class uk.ac.ic.doc.automed.p2p.qproc.planner.QueryPlannerResult
 -  
 - addMappings(QueryPlannerResult, int, boolean) - 
Method in class uk.ac.ic.doc.automed.p2p.qproc.planner.QueryPlannerResult
 - Copy mappings from one result object to another.
 - addMatchItem(Document, String, List, List, List, List) - 
Static method in class uk.ac.bbk.dcs.automed.pathgen.PathwayGenerator
 -  
 - addMessageHandler(MessageHandler, Tag) - 
Method in class uk.ac.ic.doc.automed.p2p.son.dht.AutoMedDHTImpl
 - Applications should call this method for each type of message that they are
 interested in 
 handling.
 - addMetadata(Object) - 
Method in class uk.ac.ic.doc.automed.p2p.editor.KQueryMain
 - Invoked to add metadata to the metadata editor
 - addMetadata(Object, Object) - 
Method in class uk.ac.ic.doc.automed.util.graph.impl.Graph
 - set a constraint on a node
 - addMissingNodes - 
Variable in class uk.ac.bbk.dcs.automed.hdmstore.HdmStore
 -  
 - addMixedContent(Document, Element) - 
Static method in class uk.ac.bbk.dcs.automed.xml.wrappers.XMLDSSFromXMLSchema
 -  
 - addModel(String, String, String) - 
Method in class uk.ac.ic.doc.automed.p2p.directory.P2PDirectoryRepository
 - Save a model structure to repository
 - addModel(String, String, String, String[]) - 
Method in class uk.ac.ic.doc.automed.p2p.directory.P2PDirectoryRepository
 - An overload method of 
#addModel(name, description, structure) above
 - addModelChangeListener(ModelChangeListener) - 
Method in class uk.ac.ic.doc.automed.reps.Model
 -  
 - addModelsListener(ModelsListener) - 
Static method in class uk.ac.ic.doc.automed.reps.Model
 - Add an instance of any class implementing interface 
 
ModelsListener such that it will be notified of any adding
 or deleting of models that may occur.
 - addModelToMap() - 
Method in class uk.ac.ic.doc.automed.reps.Model
 - Adds a 
Model to the Model HashMap.
 - addModule(AbstractModule) - 
Method in class uk.ac.ic.doc.automed.matching.Filter
 - Appends the specified module to the list of modules of this 
Filter object.
 - addMouseListener(MouseListener) - 
Method in class uk.ac.ic.doc.automed.editor.ComboEditor
 -  
 - addMouseListener(Component, ActionListener) - 
Method in class uk.ac.ic.doc.automed.p2p.gui.ScreenHandler
 -  
 - addMouseMotionListener(Component, ActionListener) - 
Method in class uk.ac.ic.doc.automed.p2p.gui.ScreenHandler
 -  
 - addMouseOverShape(GShape) - 
Method in class uk.ac.ic.doc.automed.p2p.gui.graph.CommonScreenHandler
 -  
 - addMultiparentLinks(Schema) - 
Method in class uk.ac.ic.doc.automed.wrappers.XMLSchemaWrapperFactory
 -  
 - addNestTransform(String, String, XSDOMObject, XSDOMObject) - 
Method in class uk.ac.ic.doc.automed.xmlschema.JTreeTransform
 - Automed transforations to nest an element inside another one, replacing an fk element in the process
 - addNetworkChangeListener(NetworkChangeListener) - 
Method in class uk.ac.ic.doc.automed.reps.Network
 -  
 - addNetworksListener(NetworksListener) - 
Static method in class uk.ac.ic.doc.automed.reps.Network
 -  
 - addNew(Object, boolean) - 
Method in class uk.ac.ic.doc.automed.p2p.gui.RecordScroller
 -  
 - addNewKeyword(GNode, GraphUI) - 
Method in class uk.ac.ic.doc.automed.p2p.editor.KQueryMain.QueryEditorHelper
 - Add a new keyword as a new node in the query graph.
 Draw the k-node, adds to the query graph and draw edges that connect this
 new k-node to all other nodes of the graph.
 - addNewKeyword(GNode, GNode, GraphUI) - 
Method in class uk.ac.ic.doc.automed.p2p.editor.KQueryMain.QueryEditorHelper
 - Add a new keyword node, and connects it to an existing node
 - addNewKeywordEdge(GNode, GNode, GraphUI) - 
Method in class uk.ac.ic.doc.automed.p2p.editor.KQueryMain.QueryEditorHelper
 - Add a k-edge between two existing k-nodes.
 - addNodal(SchemaObject) - 
Method in class uk.ac.ic.doc.automed.modelmanagement.operators.Merge
 - Add a nodal object to the merged schema
 - addNodal(SchemaObject) - 
Method in class uk.ac.ic.doc.automed.modelmanagement.operators.RenameMerge
 - Add a nodal object to the merged schema
 - addNode(String, String) - 
Method in class uk.ac.bbk.dcs.automed.hdmstore.HdmStore
 - Takes a node type and a value and adds to the database
 - addNode(Object) - 
Method in class uk.ac.ic.doc.automed.p2p.gui.graph.DefaultGraphModel
 -  
 - addNode(GNode) - 
Method in class uk.ac.ic.doc.automed.p2p.gui.graph.GraphComponent
 - Add a node to this component
 - addNode(Object) - 
Method in interface uk.ac.ic.doc.automed.util.graph.GraphI
 -  
 - addNode(Object) - 
Method in class uk.ac.ic.doc.automed.util.graph.impl.Graph
 -  
 - addNode(Node) - 
Method in class uk.ac.ic.doc.automed.util.graph.impl.GTree
 -  
 - addNodeNameScheme() - 
Method in class uk.ac.ic.doc.automed.reps.Construct
 - NodeName schemes can only be added to NODAL and LINK-NODAL construct
 types.
 - addNodeNameScheme(boolean) - 
Method in class uk.ac.ic.doc.automed.reps.Construct
 -  
 - addNodeNameScheme(int, int) - 
Method in class uk.ac.ic.doc.automed.reps.Construct
 -  
 - addNodeNameScheme(int, int, boolean) - 
Method in class uk.ac.ic.doc.automed.reps.Construct
 -  
 - addNodeObject(String, String) - 
Method in class uk.ac.ic.doc.automed.util.graph.impl.DataGraph
 - Add a new node object given its name and data type.
 - addNodeObject(String, String) - 
Method in class uk.ac.ic.doc.automed.util.graph.impl.HDMGraph
 - Add a new HDM node object given its AutoMed scheme definition and data
 type.
 - addNodes(GNode[], Graphics) - 
Method in class uk.ac.ic.doc.automed.p2p.gui.graph.EclipseAndANodeComponent
 - Add some more nodes to this component
 - addNodes(GNode[], Graphics) - 
Method in class uk.ac.ic.doc.automed.p2p.gui.graph.GraphComponent
 - Add some more nodes to this component
 - addNodes(GraphComponent, GNode[]) - 
Method in class uk.ac.ic.doc.automed.p2p.gui.graph.GraphUI
 - Add nodes to an existing component
 - addNodes(GraphUI, GraphComponent, GNode[]) - 
Method in class uk.ac.ic.doc.automed.p2p.gui.graph.GraphViz
 - Add nodes to an existing component
 - addNonAuxiliaryModule(AbstractModule) - 
Method in class uk.ac.ic.doc.automed.matching.Aggregator
 - Appends the specified module to the list of non-auxiliary modules of this 
Aggregator
 - addNonDuplicates(ArrayList, boolean) - 
Method in class uk.ac.ic.doc.automed.modelmanagement.operators.RenameMerge
 -  
 - addNonDuplicateS1ToS2(ArrayList) - 
Method in class uk.ac.ic.doc.automed.modelmanagement.operators.Merge
 -  
 - addNonDuplicates2ToMerged(ArrayList) - 
Method in class uk.ac.ic.doc.automed.modelmanagement.operators.Merge
 - Adds any schema objects from s2 that are not derived from s1 to smerged
 - addNonDuplicateS2ToS1(ArrayList) - 
Method in class uk.ac.ic.doc.automed.modelmanagement.operators.Merge
 -  
 - addNumofinstancesRels(AbstractModule, BidirectionalMap) - 
Method in class uk.ac.ic.doc.automed.editor.MatchingTool
 -  
 - addObject(Object) - 
Method in class uk.ac.ic.doc.automed.editor.PatternWritingTool.DynamicTree
 - Add child to the currently selected node.
 - addObject(DefaultMutableTreeNode, Object) - 
Method in class uk.ac.ic.doc.automed.editor.PatternWritingTool.DynamicTree
 -  
 - addObject(DefaultMutableTreeNode, Object, boolean) - 
Method in class uk.ac.ic.doc.automed.editor.PatternWritingTool.DynamicTree
 -  
 - addObject(DefaultMutableTreeNode, Object, int, boolean) - 
Method in class uk.ac.ic.doc.automed.editor.PatternWritingTool.DynamicTree
 -  
 - addObject(Object) - 
Method in class uk.ac.ic.doc.automed.p2p.gui.graph.GTable.TableStruct
 -  
 - addObject(AutoMedObject) - 
Method in class uk.ac.ic.doc.automed.p2p.tree.CollectionSet
 -  
 - addObject(PersistentObject) - 
Method in class uk.ac.ic.doc.automed.p2p.tree.Root
 -  
 - addObject(HDMObject) - 
Method in class uk.ac.ic.doc.automed.util.graph.impl.HDMGraph
 -  
 - addObjectCollection(ObjectCollection) - 
Method in class uk.ac.ic.doc.automed.p2p.tree.Root
 -  
 - addObjectMapping(Edge, ObjectMapping) - 
Method in class uk.ac.ic.doc.automed.p2p.qproc.model.QueryMapping
 - Adds an mapping of a k-edge.
 - addObjectsToModel(List, Model) - 
Method in class uk.ac.ic.doc.automed.p2p.tree.ModelObjectBuilder
 - Add construct objects to an existing model
 - addObjectsToModel(List, Model) - 
Method in class uk.ac.ic.doc.automed.p2p.tree.ObjectBuilder
 - Deprecated. use
             
ModelObjectBuilder.createModel(AutoMedObject objectNode, boolean overwrite)
             instead
 - addObjectsToSchema(List, Schema) - 
Method in class uk.ac.ic.doc.automed.p2p.tree.ObjectBuilder
 - dmle 13/11/2005: change scope to package level
 - addOutgoingEdge(DirectedGraphNode) - 
Method in class uk.ac.bbk.dcs.automed.graph.DirectedGraphNode
 - Adds a node in the set of outgoing edges of the calling node.
 - addPageRankReceiverHandler(Queue) - 
Method in class uk.ac.ic.doc.automed.p2p.son.dht.AutoMedDHTImpl
 - Register a handler for page rank propagation messages
 - addPairToHashMapZ1() - 
Static method in class uk.ac.ic.doc.automed.tml.PathwayOptimiser
 -  
 - addPairToHashMapZ2() - 
Static method in class uk.ac.ic.doc.automed.tml.PathwayOptimiser
 -  
 - addParent(InternalSemanticRelationshipNode) - 
Method in class it.unibo.cs.USI.tools.InternalSemanticRelationshipNode
 -  
 - addParent(Node) - 
Method in class uk.ac.ic.doc.automed.reps.Node
 -  
 - addPathway(Schema[], Schema[]) - 
Static method in class uk.ac.ic.doc.automed.modelmanagement.operators.Operator
 - Compose two mappings
 - addPathway(Object[]) - 
Method in class uk.ac.ic.doc.automed.p2p.directory.P2PDirectoryRepository
 - Add a new pathway definition to the repository
 - addPathwayTranformation(Object[]) - 
Method in class uk.ac.ic.doc.automed.p2p.directory.P2PDirectoryRepository
 - Add a new pathway transformation to the repository
 - addPattern() - 
Method in class uk.ac.ic.doc.automed.editor.PatternWritingTool
 -  
 - addPatternPane(Container, GridBagConstraints) - 
Method in class uk.ac.ic.doc.automed.editor.PatternWritingTool
 -  
 - addPeer(Object[], Properties) - 
Method in class uk.ac.ic.doc.automed.p2p.directory.P2PDirectoryRepository
 - Add a new peer
 - addPeer(String, String) - 
Method in class uk.ac.ic.doc.automed.p2p.directory.P2PDirectoryRepository
 -  
 - addPeer(String, int) - 
Method in class uk.ac.ic.doc.automed.p2p.P2PRegistry
 -  
 - addPeer(DBAccess, String) - 
Static method in class uk.ac.ic.doc.automed.p2p.util.DataToolKit
 - Create a new peer in the peer table This method is invoked only by the
 query planner component to create a new peer information record for each
 new schema object
 - addPeerConfig(String, String) - 
Static method in class uk.ac.ic.doc.automed.p2p.AppToolKit
 - Register a peer configuration to a domain
 - addPeerConfig(String, AppToolKit.NodeConfig) - 
Static method in class uk.ac.ic.doc.automed.p2p.AppToolKit
 - Register a peer configuration to a domain
 - addPeerLocations(HDMObject, boolean, int, Map) - 
Method in class uk.ac.ic.doc.automed.p2p.qproc.planner.QueryPlannerResult
 - Save peer locations to the database.
 - addPeerSchema(String, String) - 
Method in class uk.ac.ic.doc.automed.p2p.directory.P2PDirectoryRepository
 -  
 - addPeerSchema(String[]) - 
Method in class uk.ac.ic.doc.automed.p2p.directory.P2PDirectoryRepository
 -  
 - addPI(String) - 
Method in class uk.ac.ic.doc.automed.wrappers.xsdomobject.Document
 - Add the PI info to the top of the schema file
 - addPKSO(SchemaObject, Object[]) - 
Method in class uk.ac.ic.doc.automed.wrappers.SQLWrapperFactory.SQLTable
 -  
 - addPlausibility(Proposition, double) - 
Method in interface it.unibo.cs.belief.PlausibilityFunction
 - Increases the plausibility of a proposition by a specified value.
 - addPrecisionRels(AbstractModule, BidirectionalMap) - 
Method in class uk.ac.ic.doc.automed.editor.MatchingTool
 -  
 - addPrefix(String, String) - 
Static method in class uk.ac.ic.doc.automed.Util
 - Adds the prefix to the beginning of each line in message
 - addPrefix(String, String) - 
Static method in class uk.ac.ic.doc.automed.xml.XMLSyntax
 -  
 - addPrimaryKeyData(List) - 
Method in class uk.ac.bbk.dcs.automed.qproc.optimise.optimisers.RelationalMetadata
 -  
 - addProcessed(Object) - 
Method in class uk.ac.ic.doc.automed.p2p.util.topk.RecordStream
 - record a row that has successfully processed by the top-k algorithm
 - addProperties(Schema, Graph, GraphElementFactory) - 
Method in class uk.ac.ic.doc.automed.wrappers.RDFSWrapperFactory
 -  
 - addProperty(Schema, SchemaObject) - 
Method in class uk.ac.ic.doc.automed.modelmanagement.modelgen.HDMToRDFS
 - Add a property
 - addProperty(SchemaObject, int) - 
Method in class uk.ac.ic.doc.automed.reps.RDFOutputter
 - Process an property of a complex type from the XMLSchema
 - addPropertyChangedListener(ActionListener) - 
Method in class uk.ac.ic.doc.automed.p2p.gui.PropertyEditor
 - Users of this class interested in handling changes to property must
 register an ActionListener object through this method.
 - addPropertyObjects(GShape, String, Collection, int, ActionListener) - 
Method in class uk.ac.ic.doc.automed.p2p.gui.graph.GraphViz
 -  
 - addPublisherControls() - 
Method in class uk.ac.ic.doc.automed.p2p.editor.KQueryMain
 - user data publisher controls
 - addQuery(ASG, Object) - 
Method in interface uk.ac.ic.doc.automed.qproc.cache.IQueryCache
 - Store reference to the 
AbstractQueryProcessor object that processes this query
 so that we can in a later stage use the query analysis with query result
 to build a semantic cache entry for the query
.
 - addQueryMapping(QueryMapping) - 
Method in class uk.ac.ic.doc.automed.p2p.qproc.planner.QueryPlannerResult
 - Add one query mapping to the result.
 - addQueryMappings(Collection) - 
Method in class uk.ac.ic.doc.automed.p2p.qproc.planner.QueryPlannerResult
 - Add a collection of query mappings to the result.
 - addQueryResult(String, Object) - 
Method in interface uk.ac.ic.doc.automed.qproc.cache.IQueryCache
 - Add a new query to cache.
 - addQuerySchemaObjectsToConditions(ArrayList) - 
Method in class uk.ac.ic.doc.automed.tml.TML
 -  
 - addQuerySchemas(Schema[]) - 
Method in class uk.ac.ic.doc.automed.p2p.editor.KQueryAnalysisTool
 - Add new schemas to the schema list
 - addRangeDef(String, AutoMedType[][]) - 
Method in class uk.ac.ic.doc.automed.qproc.QueryRewriterResult
 -  
 - addRecursiveNode(SchemaObject) - 
Method in class uk.ac.ic.doc.automed.modelmanagement.modelgen.HighLevelToHDM
 - Add an HDM mapping for an XML recursive structure
 - addReferenceScheme(Construct) - 
Method in class uk.ac.ic.doc.automed.reps.Construct
 -  
 - addReferenceScheme(Construct, boolean) - 
Method in class uk.ac.ic.doc.automed.reps.Construct
 -  
 - addReferenceScheme(Construct, int, int) - 
Method in class uk.ac.ic.doc.automed.reps.Construct
 -  
 - addReferenceScheme(Construct, int, int, boolean) - 
Method in class uk.ac.ic.doc.automed.reps.Construct
 -  
 - addRefObject(Construct, SchemaObject) - 
Method in class uk.ac.ic.doc.automed.modelmanagement.matchmodel.MatchObject
 - Add a
 - addRelationship() - 
Method in class uk.ac.ic.doc.automed.editor.MatchingTool.MyTableModel
 -  
 - addRelationship(Schema, SchemaObject) - 
Method in class uk.ac.ic.doc.automed.modelmanagement.modelgen.HDMToEER
 - Add a relationship
 - addRelationship(Schema, SchemaObject) - 
Method in class uk.ac.ic.doc.automed.modelmanagement.modelgen.HDMToER
 - Add a relationship
 - addRelationshipItem - 
Variable in class uk.ac.ic.doc.automed.editor.MatchingTool
 -  
 - addReloadHook(Method) - 
Static method in class uk.ac.ic.doc.automed.DSR
 -  
 - addRels(SimilarSchemaElementPair[], BidirectionalMap, ArrayList) - 
Method in class uk.ac.ic.doc.automed.editor.MatchingTool
 -  
 - addRemainderQuery(ASG, ASG) - 
Method in class uk.ac.ic.doc.automed.qproc.QueryRewriterResult
 - Add a remainder rewriting of a rewriting
 - addRequestListener(RequestListener) - 
Method in class uk.ac.ic.doc.automed.p2p.AutoMedPeer
 - Register a 
RequestListener object for client requests
 - addRequestListener(RequestListener) - 
Method in class uk.ac.ic.doc.automed.p2p.directory.P2PDirectory
 - Register a 
RequestListener object to client requests
 - addRequestListener(RequestListener) - 
Method in class uk.ac.ic.doc.automed.p2p.DirectoryServicePeer
 - Register a 
RequestListener object to client requests
 - address - 
Variable in class uk.ac.ic.doc.automed.p2p.messages.applicationlayer.HelloMsg
 -  
 - ADDRESS - 
Static variable in class uk.ac.ic.doc.automed.p2p.protocol.P2PConstants
 -  
 - addResult(String, String) - 
Method in class uk.ac.ic.doc.automed.p2p.messages.applicationlayer.TellBrokerQuery
 -  
 - addResultQuery(ASG, List, int) - 
Method in class uk.ac.ic.doc.automed.qproc.QueryRewriterResult
 -  
 - addResults(List, List) - 
Method in class uk.ac.ic.doc.automed.p2p.messages.applicationlayer.TellBrokerQuery
 -  
 - addRootType(ComplexType) - 
Method in class uk.ac.ic.doc.automed.wrappers.xsdomobject.Document
 - Add a single root type
 - addRootTypes(ArrayList) - 
Method in class uk.ac.ic.doc.automed.wrappers.xsdomobject.Document
 - Add some root types
 - addRow(String[], String) - 
Method in class uk.ac.ic.doc.automed.p2p.directory.P2PDirectoryRepository
 - Add a row of String-type values into table without checking for
 uniqueness.
 - addRow(Object[], String) - 
Method in class uk.ac.ic.doc.automed.p2p.directory.P2PDirectoryRepository
 - An overloading method of 
P2PDirectoryRepository.addRow(String[] row, String tableName)
 which works with row of values of mixed types
 - addRow(Vector) - 
Method in class uk.ac.ic.doc.automed.p2p.gui.graph.GTable
 -  
 - addRow(Vector, Graphics) - 
Method in class uk.ac.ic.doc.automed.p2p.gui.graph.TableComponent
 - Add a new row to the table
 - addRow(Object) - 
Method in class uk.ac.ic.doc.automed.p2p.gui.ObjectSetSelector.MyTableModel
 - add a new row to the table
 - addSchema(String, String, String) - 
Method in class uk.ac.ic.doc.automed.p2p.directory.P2PDirectoryRepository
 -  
 - addSchema(String[]) - 
Method in class uk.ac.ic.doc.automed.p2p.directory.P2PDirectoryRepository
 -  
 - addSchemaChangeListener(SchemaChangeListener) - 
Method in class uk.ac.ic.doc.automed.reps.Schema
 -  
 - AddSchemaObjectToPanel(SchemaObject, String) - 
Method in class uk.ac.ic.doc.automed.editor.PatternWritingTool
 -  
 - AddSchemaObjectToPanel(SchemaObject, String, String, SchemaObject) - 
Method in class uk.ac.ic.doc.automed.editor.PatternWritingTool
 -  
 - addSchemaPane(Container, GridBagConstraints) - 
Method in class uk.ac.ic.doc.automed.editor.PatternWritingTool
 - /*      GUI : YATTA SCHEMA PART    
/
 - addSchemasListener(SchemasListener) - 
Static method in class uk.ac.ic.doc.automed.reps.Schema
 - Add an instance of any class implementing interface 
SchemasListener
 such that it will be notified of any adding or deleting of schemas that may
 occur.
 - addSchemaToMap() - 
Method in class uk.ac.ic.doc.automed.reps.Schema
 - Adds a 
Schema object to the schema HashMap.
 - addSchemeBrackets(String) - 
Static method in class uk.ac.bbk.dcs.automed.qproc.iql.IQLUtility
 -  
 - addSchemePos(Object) - 
Method in class uk.ac.ic.doc.automed.util.graph.impl.Edge
 -  
 - addSchemePos(Object) - 
Method in class uk.ac.ic.doc.automed.util.graph.impl.HDMObject
 -  
 - addSchemeProfile(String, String, String) - 
Method in class uk.ac.ic.doc.automed.p2p.directory.P2PDirectoryRepository
 - Add schema-model-peer association
 - addSelected(Object) - 
Method in class uk.ac.ic.doc.automed.p2p.editor.KQueryAnalysisTool.QueryDisplayHandler
 -  
 - addSelectedMapping(String, String, String, String) - 
Method in class uk.ac.ic.doc.automed.p2p.editor.KQueryMainHelper
 - register a selected mapping as the user operates on the mapping table
 - addShape(GShape, String, boolean) - 
Method in class uk.ac.ic.doc.automed.p2p.gui.graph.GraphUI
 - Draw a user shape on the canvas
 - addSIDTablePane(Container) - 
Method in class uk.ac.ic.doc.automed.editor.IDTool
 -  
 - addSimpleElement(Schema, SchemaObject, SchemaObject, SchemaObject) - 
Method in class uk.ac.ic.doc.automed.modelmanagement.modelgen.HDMToXMLSchema
 - Add a child element and a link to it's parent complex type
 - addSimpleElement(SchemaObject, ComplexType) - 
Method in class uk.ac.ic.doc.automed.wrappers.xsdomobject.AutoMedToXSDOM
 - Add simple elements to their respective complex types
 - addSimpleElement(SchemaObject, int) - 
Method in class uk.ac.ic.doc.automed.xmlschema.output.XMLOutputter
 - Add simple elements to their respective complex types
 - addSMergedObjectsToS2(ArrayList) - 
Method in class uk.ac.ic.doc.automed.modelmanagement.operators.Merge
 - Now create a pathway from s2 to smerged
 - addSourcePane(Container, GridBagConstraints) - 
Method in class uk.ac.ic.doc.automed.editor.PatternWritingTool
 - /*      GUI : DATA SOURCE PART    
/
 - addSubGraph(DirectedGraph) - 
Method in class uk.ac.bbk.dcs.automed.graph.DirectedGraph
 - Adds a subGraph in the set of subGraphs.
 - addSubset(Schema, SchemaObject) - 
Method in class uk.ac.ic.doc.automed.modelmanagement.modelgen.HDMToEER
 - Add a subset
 - addSupressedTokenType(int) - 
Method in class uk.ac.ic.doc.automed.xml.XMLReader
 -  
 - addSupressedTokenTypes(int[]) - 
Method in class uk.ac.ic.doc.automed.xml.XMLReader
 -  
 - addTable(Schema, SchemaObject) - 
Method in class uk.ac.ic.doc.automed.modelmanagement.modelgen.HDMToRelational
 - Add a relational table to Automed
 - addTable(Schema, SchemaObject) - 
Method in class uk.ac.ic.doc.automed.modelmanagement.modelgen.HDMToSQL
 - Add a relational table to Automed
 - addText(Node, XMLDSSGraphElement) - 
Method in class uk.ac.bbk.dcs.automed.xml.sra.old.xmldssGraph.XMLDSSGraph
 -  
 - addText(String) - 
Method in class uk.ac.ic.doc.automed.p2p.gui.TextConsole
 -  
 - addText(char) - 
Method in class uk.ac.ic.doc.automed.p2p.gui.TextConsole
 -  
 - addToFromClause(String, String) - 
Method in class uk.ac.bbk.dcs.automed.wrappers.IQL2SQLTranslator
 -  
 - addToFromClause(String) - 
Method in class uk.ac.bbk.dcs.automed.wrappers.IQL2SQLTranslator
 -  
 - addToGraph(JComponent) - 
Method in class uk.ac.ic.doc.automed.p2p.gui.graph.GraphViz
 - Add a GUI component to a location next to the graph UI (the same part as
 the main Graph interface)
 - addToIOTime(long) - 
Method in class uk.ac.bbk.dcs.automed.xml.sra.SRAStatistics
 -  
 - addToken(int, String, Object) - 
Method in class uk.ac.ic.doc.automed.xml.XMLReader
 -  
 - addToList(Object[], List) - 
Static method in class uk.ac.ic.doc.automed.p2p.util.DataToolKit
 - Add an array to a list
 - addToModel(GraphUI, GraphComponent) - 
Method in class uk.ac.ic.doc.automed.p2p.gui.graph.GraphViz
 -  
 - addToModel(GraphUI, GShape[]) - 
Method in class uk.ac.ic.doc.automed.p2p.gui.graph.GraphViz
 -  
 - addToModel(GraphUI, GShape) - 
Method in class uk.ac.ic.doc.automed.p2p.gui.graph.GraphViz
 - Update the graph model of a Graph UI with a new shape.
 - addToModel(DefaultGraphModel, GNode) - 
Method in class uk.ac.ic.doc.automed.p2p.gui.graph.GraphViz
 -  
 - addToModel(DefaultGraphModel, GEdge) - 
Method in class uk.ac.ic.doc.automed.p2p.gui.graph.GraphViz
 -  
 - addToModel(DefaultGraphModel, GraphComponent) - 
Method in class uk.ac.ic.doc.automed.p2p.gui.graph.GraphViz
 -  
 - addToNegPostString(String) - 
Method in class uk.ac.ic.doc.automed.tml.TML
 -  
 - addToNegPreString(String) - 
Method in class uk.ac.ic.doc.automed.tml.TML
 -  
 - addToPosPostString(String) - 
Method in class uk.ac.ic.doc.automed.tml.TML
 -  
 - addToPosPreString(String) - 
Method in class uk.ac.ic.doc.automed.tml.TML
 -  
 - addToSelectClause(String, String) - 
Method in class uk.ac.bbk.dcs.automed.wrappers.IQL2SQLTranslator
 -  
 - addToShapeContext(GShape, GShape) - 
Method in class uk.ac.ic.doc.automed.p2p.gui.graph.GraphUI
 -  
 - addToShapeContext(GraphUI, GShape, GShape) - 
Method in class uk.ac.ic.doc.automed.p2p.gui.graph.GraphViz
 -  
 - addToViewMap(SchemeInfo, Cell, Map, int) - 
Static method in class uk.ac.bbk.dcs.automed.qproc.reformulate.AtomicViewMap
 -  
 - addToViewMap(Map, ViewKey, Cell, int) - 
Static method in class uk.ac.bbk.dcs.automed.qproc.reformulate.InverseRulesAlgorithm
 -  
 - addToWhereClause(String) - 
Method in class uk.ac.bbk.dcs.automed.wrappers.IQL2SQLTranslator
 -  
 - addToWhereClause(AutoMedQueryToken, SQLQuery, SQLQuery) - 
Method in class uk.ac.ic.doc.automed.wrappers.SQLWrapper.ASGtoSQL
 -  
 - addToWhereClause(SQLQuery, SQLQuery) - 
Method in class uk.ac.ic.doc.automed.wrappers.SQLWrapper.ASGtoSQL
 -  
 - addToWhereClause(SQLQuery) - 
Method in class uk.ac.ic.doc.automed.wrappers.SQLWrapper.ASGtoSQL
 -  
 - addToWorkBench(JComponent, String) - 
Method in class uk.ac.ic.doc.automed.p2p.gui.graph.GraphViz
 - Add a new component to the workbench under a new tab
 - addToWorkBench(JComponent, String, int) - 
Method in class uk.ac.ic.doc.automed.p2p.gui.graph.GraphViz
 -  
 - addToWorkBench(JComponent, String, String) - 
Method in class uk.ac.ic.doc.automed.p2p.gui.graph.GraphViz
 -  
 - addTransformation(AutoMedObject) - 
Method in class uk.ac.ic.doc.automed.p2p.tree.AbstractNetwork
 -  
 - addTree(TreeNode) - 
Method in class uk.ac.bbk.dcs.automed.graph.Forest
 - Adds a tree to the forest.
 - addTypeObjectsToModel(List, Model) - 
Method in class uk.ac.ic.doc.automed.p2p.tree.ModelObjectBuilder
 - Add type hierarchy of this model
 - addTypeScheme() - 
Method in class uk.ac.ic.doc.automed.reps.Construct
 - Type schemes work the same way as lable schemes
 Link-Nodal
 Defaults to isKey = false, 1..1
 - addTypeScheme(boolean) - 
Method in class uk.ac.ic.doc.automed.reps.Construct
 -  
 - addTypeScheme(int, int) - 
Method in class uk.ac.ic.doc.automed.reps.Construct
 -  
 - addTypeScheme(int, int, boolean) - 
Method in class uk.ac.ic.doc.automed.reps.Construct
 -  
 - addTypeToCTH(TypeHierarchy, TypeHierarchy.TypeObject) - 
Method in class uk.ac.ic.doc.automed.reps.TypeHierarchy
 - This recursive function is used during the merge process to add
 - addTypeToHierarchy(int, String, int, int) - 
Method in class uk.ac.ic.doc.automed.reps.TypeHierarchy
 - Add a type from the repository to the hierarchy
 - addTypeToHierarchy(String, String, String) - 
Method in class uk.ac.ic.doc.automed.reps.TypeHierarchy
 - Add a new type to the hierarchy and the repository.
 - addUniqueRow(String[], String) - 
Method in class uk.ac.ic.doc.automed.p2p.directory.P2PDirectoryRepository
 -  
 - addUniqueRowFromNoneKeyColumns(String[], String[], String) - 
Method in class uk.ac.ic.doc.automed.p2p.directory.P2PDirectoryRepository
 - An overloading method of
 
P2PDirectoryRepository.addUniqueRow(String[] row, String tableName) 
 that check uniqueness based on all provided column values rather than the
 key
 - addUniqueRowFromNoneKeyColumns(Object[], String[], String) - 
Method in class uk.ac.ic.doc.automed.p2p.directory.P2PDirectoryRepository
 - An overloading method of
 
P2PDirectoryRepository.addUniqueRowFromNoneKeyColumns(Object[] row, String[] columns,
 String tableName) that operates on an array of row values of mixed
 types
 - addUserControls() - 
Method in class uk.ac.ic.doc.automed.p2p.editor.KQueryMain
 -  
 - addViewSet(List) - 
Method in class uk.ac.ic.doc.automed.qproc.QueryRewriterResult
 -  
 - addWhereClauseItem(String, String) - 
Method in class uk.ac.bbk.dcs.automed.xml.wrappers.IQL2XQuery
 -  
 - addXMLDSS(String, Document, String) - 
Static method in class uk.ac.bbk.dcs.automed.xml.wrappers.NXDBSchemaManager
 -  
 - addXMLSchemaObjectsToHashTables() - 
Method in class uk.ac.ic.doc.automed.wrappers.xsdomobject.AutoMedToXSDOM
 - Add all the XMLSchema objects to the appropriate hash tables
 - addXSDOMComplexType(DefaultMutableTreeNode) - 
Method in class uk.ac.ic.doc.automed.editor.XMLSchemaEditor
 - Get the XML Schema structure from the tree in the GUI in case it's changed.
 - adjacents - 
Variable in class uk.ac.ic.doc.automed.editor.EditorPanel
 -  
 - adjacents - 
Variable in class uk.ac.ic.doc.automed.reps.Node
 -  
 - adjustBeginLineColumn(int, int) - 
Method in class uk.ac.bbk.dcs.automed.qproc.annotate.grammars.schemes.SimpleCharStream
 - Method to adjust line and column numbers for the start of a token.
 - adjustBeginLineColumn(int, int) - 
Method in class uk.ac.bbk.dcs.automed.qproc.annotate.grammars.simpleComp.SimpleCharStream
 - Method to adjust line and column numbers for the start of a token.
 - adjustBeginLineColumn(int, int) - 
Method in class uk.ac.bbk.dcs.automed.qproc.annotate.grammars.simpleCompAppend.SimpleCharStream
 - Method to adjust line and column numbers for the start of a token.
 - adjustBeginLineColumn(int, int) - 
Method in class uk.ac.bbk.dcs.automed.qproc.annotate.grammars.simpleCompAppendMonus.SimpleCharStream
 - Method to adjust line and column numbers for the start of a token.
 - adjustBeginLineColumn(int, int) - 
Method in class uk.ac.bbk.dcs.automed.qproc.annotate.grammars.simpleCompMember.SimpleCharStream
 - Method to adjust line and column numbers for the start of a token.
 - adjustBeginLineColumn(int, int) - 
Method in class uk.ac.bbk.dcs.automed.qproc.annotate.grammars.sql.SimpleCharStream
 - Method to adjust line and column numbers for the start of a token.
 - adjustBeginLineColumn(int, int) - 
Static method in class uk.ac.bbk.dcs.automed.qproc.translators.sql.SimpleCharStream
 - Method to adjust line and column numbers for the start of a token.
 - adjustBeginLineColumn(int, int) - 
Method in class uk.ac.bbk.dcs.automed.qproc.translators.xquery.SimpleCharStream
 - Method to adjust line and column numbers for the start of a token.
 - ADVANCED_ALGORITHM - 
Static variable in class uk.ac.ic.doc.automed.tml.PathwayOptimiser
 -  
 - AdvancedQueryGetter - Class in uk.ac.ic.doc.automed.p2p
 -  
 - AdvancedQueryGetter(AutoMedPeer) - 
Constructor for class uk.ac.ic.doc.automed.p2p.AdvancedQueryGetter
 -  
 - advanceToNextElement() - 
Method in class uk.ac.ic.doc.automed.reasoner.DefaultDIGQueryResponseIterator
 -  
 - ADVERTISE - 
Static variable in class uk.ac.ic.doc.automed.p2p.protocol.P2PConstants
 - performative
 - advertiseContact(String) - 
Method in class uk.ac.ic.doc.automed.p2p.protocol.NSP
 - Peer->DSP: Advertise a DHT contact in the domain
 - advertiseContact(DirectoryServicePeer, String) - 
Method in class uk.ac.ic.doc.automed.p2p.protocol.NSP
 - DSP/child->DSP: a child DSP advertise a DHT contact to its parent
 - advertiseKeywords(String, Map) - 
Method in class uk.ac.ic.doc.automed.p2p.protocol.SICP
 - Peer->DSP: advertise the keywords to the DSP to be stored there
 - advertisePath - 
Variable in class uk.ac.ic.doc.automed.p2p.gui.AllSchemasFrame
 -  
 - advertisePathway(String) - 
Method in class uk.ac.ic.doc.automed.p2p.protocol.SICP
 - Peer->DSP: advertise pathway to a schema to the DSP
 - advertisePathwayAbstract(AbstractMessage, ResponseHandler) - 
Method in class uk.ac.ic.doc.automed.p2p.protocol.SICP
 - Peer->DS: advertise pathway abstraction/b> to the directory service for
 routing
- advertiseSchema(String) - 
Method in class uk.ac.ic.doc.automed.p2p.SchemaAdvertiser
 -  
 - advertiseSchemaList(AbstractMessage, ResponseHandler) - 
Method in class uk.ac.ic.doc.automed.p2p.protocol.REXEProtocol
 - Peer<-Peer: Peer responds to another peer with a schema list
 - advertizePath() - 
Method in class uk.ac.ic.doc.automed.p2p.gui.AllSchemasFrame
 -  
 - advertizePath(SchemaDescription) - 
Method in class uk.ac.ic.doc.automed.p2p.gui.PeerApplication
 -  
 - AestheticRootLayout - Class in uk.ac.ic.doc.automed.editor.layout
 -  
 - AestheticRootLayout(Gui, Object[]) - 
Constructor for class uk.ac.ic.doc.automed.editor.layout.AestheticRootLayout
 -  
 - aestheticRootLayout(Gui, Object[]) - 
Static method in class uk.ac.ic.doc.automed.editor.layout.AestheticRootLayout
 -  
 - after - 
Variable in class uk.ac.ic.doc.automed.editor.PatternWritingTool
 -  
 - afterEv - 
Variable in class uk.ac.ic.doc.automed.p2p.qproc.SMRQueryProcessor
 -  
 - afterLO - 
Variable in class uk.ac.ic.doc.automed.p2p.qproc.SMRQueryProcessor
 -  
 - afterQAFP - 
Variable in class uk.ac.ic.doc.automed.p2p.qproc.SMRQueryProcessor
 -  
 - afterQR - 
Variable in class uk.ac.ic.doc.automed.p2p.qproc.SMRQueryProcessor
 -  
 - afterSubmit - 
Variable in class uk.ac.ic.doc.automed.p2p.qproc.SMRQueryProcessor
 -  
 - afterTranslation - 
Variable in class uk.ac.ic.doc.automed.p2p.qproc.SMRQueryProcessor
 -  
 - afterVU - 
Variable in class uk.ac.ic.doc.automed.p2p.qproc.SMRQueryProcessor
 -  
 - aggregate() - 
Method in class uk.ac.bbk.dcs.automed.qproc.annotate.grammars.sql.IQLForSQLQueryParser
 -  
 - aggregatedPairs - 
Variable in class uk.ac.ic.doc.automed.matching.Aggregator
 -  
 - aggregateFunctions - 
Variable in class uk.ac.bbk.dcs.automed.wrappers.IQL2SQLTranslator
 - Contains IQL aggregate functions and their SQL counterparts.
 - aggregateFunctions - 
Variable in class uk.ac.bbk.dcs.automed.xml.wrappers.IQL2XQuery
 - Contains the IQL aggregate functions and their SQL counterparts.
 - aggregateIQLFunction - 
Variable in class uk.ac.bbk.dcs.automed.wrappers.IQLTranslator
 -  
 - aggregateQuery - 
Variable in class uk.ac.bbk.dcs.automed.wrappers.IQLTranslator
 -  
 - AGGREGATETOKEN - 
Static variable in interface uk.ac.bbk.dcs.automed.qproc.annotate.grammars.sql.IQLForSQLQueryParserConstants
 -  
 - AggregationFunctionTable - Class in uk.ac.bbk.dcs.automed.qproc.functions.aggregation
 - Class that creates a FunctionTable containing all currently implemented functions.
 - AggregationFunctionTable() - 
Constructor for class uk.ac.bbk.dcs.automed.qproc.functions.aggregation.AggregationFunctionTable
 -  
 - Aggregator - Class in uk.ac.ic.doc.automed.matching
 - The class that represents the Aggregator component in the schema matching architecture.
 - Aggregator(SchemaElementPair[]) - 
Constructor for class uk.ac.ic.doc.automed.matching.Aggregator
 - Constructs the 
Aggregator for the specified compatible pairs of elements.
 - ahandleLookUp() - 
Method in class uk.ac.ic.doc.automed.p2p.editor.KQueryMain
 - Look-up the keywords that are selected on the publish mapping gui
 - ahandlePublishMetadata() - 
Method in class uk.ac.ic.doc.automed.p2p.editor.KQueryMain
 - Publish schema definition to the P2P repository using the user's selected
 keywords
 - ahandler - 
Variable in class uk.ac.ic.doc.automed.p2p.editor.KQueryMain
 -  
 - algMap - 
Static variable in class uk.ac.ic.doc.automed.p2p.qproc.reformulate.ReformulationAlgorithmFactory
 -  
 - algo - 
Variable in class uk.ac.ic.doc.automed.p2p.rank.RankSchemaObject.RankSOMemory
 -  
 - algoClasses - 
Static variable in class uk.ac.ic.doc.automed.p2p.qproc.planner.QPlannerFactory
 -  
 - algoClassNames - 
Static variable in class uk.ac.ic.doc.automed.p2p.qproc.planner.QPlannerFactory
 -  
 - ALGORITHM - 
Static variable in class uk.ac.ic.doc.automed.p2p.son.SMRControllerChord
 -  
 - ALGORITHM_NAME - 
Static variable in class uk.ac.ic.doc.automed.p2p.routing.CresendoProvider
 -  
 - algorithms - 
Static variable in class uk.ac.ic.doc.automed.p2p.qproc.reformulate.ReformulationAlgorithmFactory
 -  
 - aliasKeyword - 
Variable in class uk.ac.bbk.dcs.automed.wrappers.IQL2SQLTranslator
 -  
 - aliasNumber - 
Variable in class uk.ac.ic.doc.automed.wrappers.SQLWrapper.ASGtoSQL
 -  
 - ALL - 
Static variable in class uk.ac.ic.doc.automed.editor.MatchingTool
 -  
 - ALL - 
Static variable in class uk.ac.ic.doc.automed.matching.SchemaElement
 -  
 - ALL - 
Static variable in interface uk.ac.ic.doc.automed.reasoner.DIGVocabulary.Language
 -  
 - ALL_CONCEPT_NAMES - 
Static variable in interface uk.ac.ic.doc.automed.reasoner.DIGVocabulary.Ask
 -  
 - ALL_DIFFERENT - 
Static variable in interface uk.ac.ic.doc.automed.reasoner.DIGVocabulary.Tell
 -  
 - ALL_INDIVIDUALS - 
Static variable in interface uk.ac.ic.doc.automed.reasoner.DIGVocabulary.Ask
 -  
 - ALL_ROLE_NAMES - 
Static variable in interface uk.ac.ic.doc.automed.reasoner.DIGVocabulary.Ask
 -  
 - allConstraintObjects - 
Variable in class uk.ac.ic.doc.automed.modelmanagement.modelgen.HDMToEER
 -  
 - allConstraintObjects - 
Variable in class uk.ac.ic.doc.automed.modelmanagement.modelgen.HDMToHighLevel
 -  
 - allConstraintObjects - 
Variable in class uk.ac.ic.doc.automed.modelmanagement.modelgen.HDMToRDFS
 -  
 - allConstraintObjects - 
Variable in class uk.ac.ic.doc.automed.modelmanagement.modelgen.HDMToRelational
 -  
 - allConstraintObjects - 
Variable in class uk.ac.ic.doc.automed.modelmanagement.modelgen.HighLevelToHDM
 -  
 - allConstraintObjects - 
Variable in class uk.ac.ic.doc.automed.modelmanagement.operators.Operator
 - The base class for the MM operators
 - allEdgeObjects - 
Variable in class uk.ac.ic.doc.automed.modelmanagement.modelgen.HDMToEER
 -  
 - allEdgeObjects - 
Variable in class uk.ac.ic.doc.automed.modelmanagement.modelgen.HDMToHighLevel
 -  
 - allEdgeObjects - 
Variable in class uk.ac.ic.doc.automed.modelmanagement.modelgen.HDMToRDFS
 -  
 - allEdgeObjects - 
Variable in class uk.ac.ic.doc.automed.modelmanagement.modelgen.HDMToRelational
 -  
 - allElementRelsInPathAre11(SRAElementRelMappingItem, Map) - 
Method in class uk.ac.bbk.dcs.automed.xml.sra.SRAPhase1
 -  
 - allLinkNodalObjects - 
Variable in class uk.ac.ic.doc.automed.modelmanagement.modelgen.HighLevelToHDM
 -  
 - allLinkNodalObjects - 
Variable in class uk.ac.ic.doc.automed.modelmanagement.operators.Operator
 -  
 - allLinkObjects - 
Variable in class uk.ac.ic.doc.automed.modelmanagement.modelgen.HighLevelToHDM
 -  
 - allLinkObjects - 
Variable in class uk.ac.ic.doc.automed.modelmanagement.operators.Operator
 -  
 - allNetworks - 
Static variable in class uk.ac.ic.doc.automed.reps.Network
 -  
 - allNodalObjects - 
Variable in class uk.ac.ic.doc.automed.modelmanagement.modelgen.HighLevelToHDM
 -  
 - allNodalObjects - 
Variable in class uk.ac.ic.doc.automed.modelmanagement.operators.Operator
 -  
 - allNodeObjects - 
Variable in class uk.ac.ic.doc.automed.modelmanagement.modelgen.HDMToEER
 -  
 - allNodeObjects - 
Variable in class uk.ac.ic.doc.automed.modelmanagement.modelgen.HDMToHighLevel
 -  
 - allNodeObjects - 
Variable in class uk.ac.ic.doc.automed.modelmanagement.modelgen.HDMToRDFS
 -  
 - allNodeObjects - 
Variable in class uk.ac.ic.doc.automed.modelmanagement.modelgen.HDMToRelational
 -  
 - allNodes - 
Static variable in class uk.ac.ic.doc.automed.reps.Node
 -  
 - allowedValues - 
Variable in class uk.ac.ic.doc.automed.p2p.gui.SimplePropertyObject
 -  
 - allowedValues - 
Variable in class uk.ac.ic.doc.automed.util.Parameter
 -  
 - allSchemaObjects - 
Variable in class uk.ac.ic.doc.automed.modelmanagement.modelgen.HighLevelToHDM
 -  
 - allSchemaObjects - 
Variable in class uk.ac.ic.doc.automed.reps.RelationalOutputter
 - A list of all the Schema Objects of type 'sql' in this schema
 - allSchemas - 
Variable in class uk.ac.ic.doc.automed.p2p.gui.PeerApplication
 -  
 - AllSchemasFrame - Class in uk.ac.ic.doc.automed.p2p.gui
 -  
 - AllSchemasFrame(PeerApplication) - 
Constructor for class uk.ac.ic.doc.automed.p2p.gui.AllSchemasFrame
 -  
 - allTargetPathElemsMissingFromSource(SRAElementRelMappingItem, Map) - 
Method in class uk.ac.bbk.dcs.automed.xml.sra.SRAPhase1
 -  
 - allTrans - 
Static variable in class uk.ac.ic.doc.automed.reps.Transformation
 -  
 - allVariables - 
Variable in class uk.ac.ic.doc.automed.wrappers.SQLWrapperFactory.SQLTable
 -  
 - allXMLSchemaObjects - 
Variable in class uk.ac.ic.doc.automed.xmlschema.XMLSchemaBuilder
 - All the XMLSchema Objects
 - ALPHA - 
Static variable in class uk.ac.ic.doc.automed.p2p.qproc.funcs.rank.RankQual
 -  
 - alpha - 
Static variable in class uk.ac.ic.doc.automed.p2p.qproc.KRange
 -  
 - alphabet - 
Static variable in class uk.ac.ic.doc.automed.p2p.util.RandomCharacter
 -  
 - altDrawer - 
Variable in class uk.ac.ic.doc.automed.p2p.gui.graph.GShape
 -  
 - altDrawing - 
Variable in class uk.ac.ic.doc.automed.p2p.gui.graph.GShape
 -  
 - alternation - 
Static variable in class uk.ac.ic.doc.automed.reps.Syntax.Token
 -  
 - alwaysFalse(Cell, Cell) - 
Method in class uk.ac.bbk.dcs.automed.qproc.optimise.optimisers.EmptyJoinOptimiser
 -  
 - am - 
Variable in class uk.ac.ic.doc.automed.reps.Schema
 -  
 - am - 
Variable in class uk.ac.ic.doc.automed.wrappers.AutoMedWrapper
 -  
 - AM_XMLDSS_ATTRIBUTES - 
Static variable in class uk.ac.bbk.dcs.automed.xml.XMLConstants
 -  
 - AM_XMLDSS_DTD_CARDINALITY - 
Static variable in class uk.ac.bbk.dcs.automed.xml.XMLConstants
 -  
 - AM_XMLDSS_ID - 
Static variable in class uk.ac.bbk.dcs.automed.xml.XMLConstants
 -  
 - AM_XMLDSS_XSD_PRIMITIVE_TYPE - 
Static variable in class uk.ac.bbk.dcs.automed.xml.XMLConstants
 -  
 - amid - 
Variable in class uk.ac.ic.doc.automed.AccessMethodPropertyRow
 -  
 - amid - 
Variable in class uk.ac.ic.doc.automed.reps.AccessMethod
 -  
 - amidExistsInAccessMethod(int) - 
Static method in class uk.ac.ic.doc.automed.STR
 - Checks if a particular access method identifier (AMID) exists in the STR.
 - amMatchObjects - 
Variable in class uk.ac.ic.doc.automed.modelmanagement.modelgen.HDMToXMLSchema
 -  
 - AMP - 
Static variable in class uk.ac.ic.doc.automed.p2p.wrappers.GoogleScholarWrapper
 -  
 - amr - 
Variable in class uk.ac.ic.doc.automed.wrappers.AutoMedTuple
 -  
 - analyse() - 
Method in class uk.ac.ic.doc.automed.p2p.qproc.KRange
 -  
 - analysed - 
Variable in class uk.ac.ic.doc.automed.p2p.qproc.KRange
 -  
 - analyseFlowCycle(LevelledGTree, List, List, Edge, boolean) - 
Method in class uk.ac.ic.doc.automed.p2p.qproc.optimise.CapacitatedNetworkFlowOptimiser
 - Analyse the tree T after being added with an extra reduced cost edge to
 form a cycle.
 - analyseIntegration(QueryPlannerResult) - 
Method in class uk.ac.ic.doc.automed.p2p.editor.KQueryAnalysisTool
 -  
 - analyseSearch(QueryPlannerResult) - 
Method in class uk.ac.ic.doc.automed.p2p.editor.KQueryAnalysisTool
 - Update the user view with a new query planner result
 - ancestorDescendantCase(Schema, SRAElementRelMappingItem, Map, SchemaObject, Map, Set) - 
Method in class uk.ac.bbk.dcs.automed.xml.sra.SRAPhase1
 -  
 - ANCESTORS - 
Static variable in interface uk.ac.ic.doc.automed.reasoner.DIGVocabulary.Ask
 -  
 - And - Class in uk.ac.bbk.dcs.automed.qproc.functions.logical
 -  
 - And() - 
Constructor for class uk.ac.bbk.dcs.automed.qproc.functions.logical.And
 -  
 - AND - 
Static variable in interface uk.ac.bbk.dcs.automed.qproc.translators.xquery.XQuery2IQLConstants
 -  
 - AND(String) - 
Method in class uk.ac.ic.doc.automed.p2p.editor.KQueryAnalysisTool.Grouping
 -  
 - AND - 
Static variable in interface uk.ac.ic.doc.automed.reasoner.DIGVocabulary.Language
 -  
 - AND - 
Static variable in class uk.ac.ic.doc.automed.wrappers.SQLQuery
 - SQL logical AND binary operator for use within WHERE expressions
 - andKeyword - 
Variable in class uk.ac.bbk.dcs.automed.wrappers.IQL2SQLTranslator
 -  
 - angle - 
Variable in class uk.ac.ic.doc.automed.p2p.gui.graph.GEdge
 -  
 - annotate(Cell, boolean, QueryProcessorConfiguration) - 
Method in class uk.ac.bbk.dcs.automed.qproc.annotate.QueryAnnotationProviderStandard
 -  
 - annotate() - 
Method in class uk.ac.bbk.dcs.automed.qproc.iql.ASG
 -  
 - annotate(Cell, boolean) - 
Method in class uk.ac.bbk.dcs.automed.qproc.iql.Cell
 -  
 - annotate(ASG, Schema[], QueryProcessorConfiguration) - 
Method in class uk.ac.bbk.dcs.automed.qproc.QueryProcessor
 -  
 - annotatedArea - 
Variable in class uk.ac.ic.doc.automed.editor.IQLTool
 -  
 - annotateHelp(Cell, boolean, boolean) - 
Method in class uk.ac.bbk.dcs.automed.qproc.annotate.QueryAnnotationProviderStandard
 -  
 - annotateQuery(Cell, QueryProcessorConfiguration) - 
Method in class uk.ac.bbk.dcs.automed.qproc.annotate.QueryAnnotationProviderStandard
 -  
 - annotateWithIDs(Cell) - 
Method in class uk.ac.bbk.dcs.automed.qproc.annotate.QueryAnnotationProviderStandard
 -  
 - annotateWrapperCallsWithIDs(Cell) - 
Method in class uk.ac.bbk.dcs.automed.qproc.annotate.QueryAnnotationProviderStandard
 -  
 - annotation - 
Variable in class uk.ac.bbk.dcs.automed.qproc.iql.Cell
 -  
 - ANNOTATION_COMP_ARG - 
Static variable in class uk.ac.bbk.dcs.automed.qproc.iql.CellAnnotationConstants
 - Cell is a comp, but not the root
 - ANNOTATION_COMP_ROOT - 
Static variable in class uk.ac.bbk.dcs.automed.qproc.iql.CellAnnotationConstants
 - Cell is the root of a comprehension
 - ANNOTATION_KWQUERY_ACTIVE - 
Static variable in class uk.ac.bbk.dcs.automed.qproc.iql.CellAnnotationConstants
 - Applied to a scheme cell to indicate that it is being processed by a 
 target peer
 - ANNOTATION_OPT_DO_NOT_UNNEST - 
Static variable in class uk.ac.bbk.dcs.automed.qproc.iql.CellAnnotationConstants
 - Hint to optimisers so as not to unnest the comprehension whose root is annotated like this.
 - ANNOTATION_OTHER - 
Static variable in class uk.ac.bbk.dcs.automed.qproc.iql.CellAnnotationConstants
 - Not a comp.
 - ANNOTATION_PARALLELISATION_LEVEL_FOUR - 
Static variable in class uk.ac.bbk.dcs.automed.qproc.iql.CellAnnotationConstants
 - All functions with arity > 1 (+ all lower levels).
 - ANNOTATION_PARALLELISATION_LEVEL_ONE - 
Static variable in class uk.ac.bbk.dcs.automed.qproc.iql.CellAnnotationConstants
 - Basic collection functions
 - ANNOTATION_PARALLELISATION_LEVEL_THREE - 
Static variable in class uk.ac.bbk.dcs.automed.qproc.iql.CellAnnotationConstants
 - Arithmetic and comparison functions (+ all lower levels).
 - ANNOTATION_PARALLELISATION_LEVEL_TWO - 
Static variable in class uk.ac.bbk.dcs.automed.qproc.iql.CellAnnotationConstants
 - Comprehensions (+ all lower levels).
 - ANNOTATION_PARALLELISATION_LEVEL_ZERO - 
Static variable in class uk.ac.bbk.dcs.automed.qproc.iql.CellAnnotationConstants
 - No threading
 - annotationID - 
Variable in class uk.ac.bbk.dcs.automed.qproc.iql.Cell
 -  
 - annotationTime - 
Variable in class uk.ac.bbk.dcs.automed.qproc.QueryProcessor
 -  
 - anonClass - 
Variable in class uk.ac.ic.doc.automed.wrappers.ICOWLDLWrapperFactory
 -  
 - ANY - 
Static variable in class uk.ac.ic.doc.automed.editor.CommandLineDriver
 -  
 - any - 
Variable in class uk.ac.ic.doc.automed.editor.PatternWritingTool
 -  
 - ANY - 
Static variable in class uk.ac.ic.doc.automed.p2p.gui.graph.CommonScreenHandler.InteractiveState
 -  
 - ANY - 
Static variable in class uk.ac.ic.doc.automed.p2p.protocol.P2PConstants
 -  
 - ANY - 
Static variable in class uk.ac.ic.doc.automed.p2p.qproc.QProcConstants
 -  
 - app - 
Variable in class uk.ac.ic.doc.automed.p2p.commands.ExecuteP2PFlowCommand
 -  
 - app - 
Variable in class uk.ac.ic.doc.automed.p2p.qproc.commands.WrapSchemaCommand
 -  
 - AppConstants - Class in uk.ac.ic.doc.automed
 - Use constants in individual classes instead, such as
Construct .CLASS_MINIMUM instead of CONSTRUCT_CLASS_MINIMUM
 - AppConstants() - 
Constructor for class uk.ac.ic.doc.automed.AppConstants
 -  
 - AppContext - Class in uk.ac.ic.doc.automed.p2p
 -  
 - AppContext() - 
Constructor for class uk.ac.ic.doc.automed.p2p.AppContext
 -  
 - appContext - 
Variable in class uk.ac.ic.doc.automed.p2p.gui.graph.GraphViz
 -  
 - appearances - 
Variable in class uk.ac.ic.doc.automed.matching.Instance
 -  
 - appearsInSchemeOf(SchemaObjectI) - 
Method in interface uk.ac.ic.doc.automed.p2p.reps.SchemaObjectI
 -  
 - appearsInSchemeOf(SchemaObject) - 
Method in class uk.ac.ic.doc.automed.reps.SchemaObject
 - Determines whether or not the schema object appears anywhere in the scheme
 of another schema object.
 - appearsInSchemeOf(SchemaObjectI) - 
Method in class uk.ac.ic.doc.automed.util.graph.impl.HDMObject
 - Returns true if the scheme definition of this HDM object
 contains at least one scheme element of another HDM object.
 - append() - 
Method in class uk.ac.bbk.dcs.automed.qproc.annotate.grammars.simpleCompAppend.SimpleCompAppend
 -  
 - APPEND - 
Static variable in interface uk.ac.bbk.dcs.automed.qproc.annotate.grammars.simpleCompAppend.SimpleCompAppendConstants
 -  
 - Append - Class in uk.ac.bbk.dcs.automed.qproc.functions.collections
 -  
 - Append() - 
Constructor for class uk.ac.bbk.dcs.automed.qproc.functions.collections.Append
 -  
 - appendArg(Object) - 
Method in class uk.ac.ic.doc.automed.p2p.qproc.funcs.Function
 - Add a new argument to this function
 - appendChild(DocumentImpl, String, String, String) - 
Method in class uk.ac.bbk.dcs.automed.xml.materialisation.XMLDSSDOMMaterialiser
 -  
 - appendChildElement(Document, Node, String) - 
Static method in class uk.ac.bbk.dcs.automed.xml.wrappers.XMLDSSFromXMLSchema
 -  
 - appendChildText(Document, Node) - 
Static method in class uk.ac.bbk.dcs.automed.xml.wrappers.XMLDSSFromXMLSchema
 -  
 - appendDigitToName(String) - 
Static method in class uk.ac.ic.doc.automed.reps.Schema
 - Appends a digit to the given name.
 - appendDigitToName(String) - 
Static method in class uk.ac.ic.doc.automed.reps.Transformation
 - Appends a digit to the given name.
 - appendGenerator(ASG, Cell) - 
Static method in class uk.ac.bbk.dcs.automed.qproc.iql.IQLUtility
 - append a geneartot to an existing ASG
 - appendGenerator(List, String, String, String, String) - 
Static method in class uk.ac.ic.doc.automed.p2p.util.IQLToolKit
 - Create a new generator from a binary HDM query scheme and append it
 to each query in an existing collection.
 
 Also add the the second variable to the head of each query in the
 collection.
 - appendGenerator(List, String[], String[], Object) - 
Static method in class uk.ac.ic.doc.automed.p2p.util.IQLToolKit
 - Create a new generator from a binary HDM query scheme and append it
 to each query in an existing collection.
 
 Also add the the second variable to the head of each query in the
 collection.
 - appendGenerator(Collection, String[], Cell) - 
Static method in class uk.ac.ic.doc.automed.p2p.util.IQLToolKit
 -  
 - appendGenerator(ASG, List) - 
Static method in class uk.ac.ic.doc.automed.p2p.util.IQLToolKit
 -  
 - appendGenerator(ASG, String[], Cell) - 
Static method in class uk.ac.ic.doc.automed.p2p.util.IQLToolKit
 -  
 - appendGenerator(ASG, List, ASG) - 
Static method in class uk.ac.ic.doc.automed.p2p.util.IQLToolKit
 - Append a generator, whose RHS is an ASG query, to an existing query.
 - appendHeadVar(Collection, String) - 
Static method in class uk.ac.ic.doc.automed.p2p.util.IQLToolKit
 - Add a new head variable to the each of the query in a query collection.
 - appendMapElements(Document, Element, Map) - 
Method in class uk.ac.ic.doc.automed.p2p.messages.abstractlayer.AbstractMessage
 -  
 - appendmonus() - 
Method in class uk.ac.bbk.dcs.automed.qproc.annotate.grammars.simpleCompAppendMonus.SimpleCompAppendMonus
 -  
 - APPENDMONUS - 
Static variable in interface uk.ac.bbk.dcs.automed.qproc.annotate.grammars.simpleCompAppendMonus.SimpleCompAppendMonusConstants
 -  
 - appendQuery(TellBrokerQuery) - 
Method in class uk.ac.ic.doc.automed.p2p.messages.applicationlayer.TellBrokerQuery
 -  
 - appendTextChild(DocumentImpl, String, String) - 
Method in class uk.ac.bbk.dcs.automed.xml.materialisation.XMLDSSDOMMaterialiser
 -  
 - AppFactory - Class in uk.ac.ic.doc.automed.p2p.apps
 -  
 - AppFactory() - 
Constructor for class uk.ac.ic.doc.automed.p2p.apps.AppFactory
 -  
 - appHandler - 
Variable in class uk.ac.ic.doc.automed.p2p.gui.graph.events.EventQueueManager
 -  
 - application - 
Variable in class uk.ac.ic.doc.automed.p2p.gui.InputDialog
 -  
 - application - 
Variable in class uk.ac.ic.doc.automed.p2p.gui.LoginFrame
 -  
 - application - 
Variable in class uk.ac.ic.doc.automed.p2p.gui.MainFrame
 -  
 - ApplicationMessage - Interface in uk.ac.ic.doc.automed.p2p.messages.applicationlayer
 -  
 - ApplicationPropertyException - Exception in uk.ac.ic.doc.automed.p2p
 -  
 - ApplicationPropertyException() - 
Constructor for exception uk.ac.ic.doc.automed.p2p.ApplicationPropertyException
 -  
 - ApplicationPropertyException(String) - 
Constructor for exception uk.ac.ic.doc.automed.p2p.ApplicationPropertyException
 -  
 - ApplicationPropertyException(Throwable) - 
Constructor for exception uk.ac.ic.doc.automed.p2p.ApplicationPropertyException
 -  
 - ApplicationPropertyException(String, Throwable) - 
Constructor for exception uk.ac.ic.doc.automed.p2p.ApplicationPropertyException
 -  
 - appListeners - 
Variable in class uk.ac.ic.doc.automed.p2p.gui.graph.events.EventQueueManager
 -  
 - apply(Cell) - 
Method in class uk.ac.bbk.dcs.automed.qproc.optimise.FoldNilRule
 -  
 - apply(Cell) - 
Method in class uk.ac.bbk.dcs.automed.qproc.optimise.optimisers.ChooseOptimiser
 - Applies rules in a bottom-to-top fashion.
 - apply(Cell) - 
Method in class uk.ac.bbk.dcs.automed.qproc.optimise.optimisers.CollectionOperatorReorganiser
 -  
 - apply(Cell) - 
Method in class uk.ac.bbk.dcs.automed.qproc.optimise.PatternRule
 -  
 - apply(Cell) - 
Method in interface uk.ac.bbk.dcs.automed.qproc.optimise.Rule
 -  
 - apply(Schema, Map, Map, SchemaObject, Document, Document, Map, Map, Map, Map, Set) - 
Method in class uk.ac.bbk.dcs.automed.xml.sra.SRAPhase1
 -  
 - apply - 
Variable in class uk.ac.ic.doc.automed.editor.TransformationTool
 -  
 - applyAddTransformation(Schema, Element, boolean) - 
Method in class uk.ac.bbk.dcs.automed.pathgen.PathwayGeneratorBAV
 -  
 - applyAddTransformation(Schema, String, String, boolean) - 
Method in class uk.ac.bbk.dcs.automed.pathgen.PathwayGeneratorBAVRelational
 -  
 - applyAddTransformation(Schema, String, String, boolean, Map, Map) - 
Static method in class uk.ac.bbk.dcs.automed.pathgen.PathwayGeneratorXMLDSSUtility
 -  
 - applyAddTransformation(Construct, Object[], String, String) - 
Method in class uk.ac.ic.doc.automed.reps.Schema
 - Returns the 
Schema which is the result of applying an ADD
 transformation.
 - applyAddTransformation(Construct, AutoMedType, Object[], String, String) - 
Method in class uk.ac.ic.doc.automed.reps.Schema
 -  
 - applyAddTransformation(Construct, Object[], String, String, String) - 
Method in class uk.ac.ic.doc.automed.reps.Schema
 - Returns the 
Schema which is the result of applying an ADD
 transformation.
 - applyAddTransformation(Construct, String, String, String) - 
Method in class uk.ac.ic.doc.automed.reps.Schema
 -  
 - applyContractTransformation(Schema, Element, boolean) - 
Method in class uk.ac.bbk.dcs.automed.pathgen.PathwayGeneratorBAV
 -  
 - applyContractTransformation(Schema, String, String, boolean) - 
Method in class uk.ac.bbk.dcs.automed.pathgen.PathwayGeneratorBAVRelational
 -  
 - applyContractTransformation(Schema, String, String, boolean, Map, Map) - 
Static method in class uk.ac.bbk.dcs.automed.pathgen.PathwayGeneratorXMLDSSUtility
 -  
 - applyContractTransformation(SchemaObject, String, String) - 
Method in class uk.ac.ic.doc.automed.reps.Schema
 - Returns the 
Schema which is the result of applying a
 CONTRACT transformation.
 - applyContractTransformation(SchemaObject, String, String, String) - 
Method in class uk.ac.ic.doc.automed.reps.Schema
 - Returns the 
Schema which is the result of applying a
 CONTRACT transformation.
 - applyDeleteTransformation(Schema, Element, boolean) - 
Method in class uk.ac.bbk.dcs.automed.pathgen.PathwayGeneratorBAV
 -  
 - applyDeleteTransformation(Schema, String, String, boolean) - 
Method in class uk.ac.bbk.dcs.automed.pathgen.PathwayGeneratorBAVRelational
 -  
 - applyDeleteTransformation(Schema, String, String, boolean, Map, Map) - 
Static method in class uk.ac.bbk.dcs.automed.pathgen.PathwayGeneratorXMLDSSUtility
 -  
 - applyDeleteTransformation(SchemaObject, String, String) - 
Method in class uk.ac.ic.doc.automed.reps.Schema
 - Returns the 
Schema which is the result of applying a DELETE
 transformation.
 - applyDeleteTransformation(SchemaObject, String, String, String) - 
Method in class uk.ac.ic.doc.automed.reps.Schema
 - Returns the 
Schema which is the result of applying a DELETE
 transformation.
 - applyDisjointnessTransformations(SchemaObject, SchemaObject[], HashMap, HashMap, SchemaObject, SchemaObject[], HashMap, HashMap, SchemaElementPair[]) - 
Method in class uk.ac.ic.doc.automed.matching.SQLIntegrator
 -  
 - applyEquivalence(Schema, SchemaObject, List) - 
Method in class uk.ac.ic.doc.automed.modelmanagement.matchmodel.TransformModel
 - Find and apply an equivalence.
 - applyExtendTransformation(Schema, Element, boolean) - 
Method in class uk.ac.bbk.dcs.automed.pathgen.PathwayGeneratorBAV
 -  
 - applyExtendTransformation(Schema, String, String, boolean) - 
Method in class uk.ac.bbk.dcs.automed.pathgen.PathwayGeneratorBAVRelational
 -  
 - applyExtendTransformation(Schema, String, String, boolean, Map, Map) - 
Static method in class uk.ac.bbk.dcs.automed.pathgen.PathwayGeneratorXMLDSSUtility
 -  
 - applyExtendTransformation(Schema, SchemaObject, ArrayList) - 
Static method in class uk.ac.ic.doc.automed.matching.Integrator
 -  
 - applyExtendTransformation(Construct, Object[], String, String) - 
Method in class uk.ac.ic.doc.automed.reps.Schema
 - Returns the 
Schema which is the result of applying an EXTEND
 transformation.
 - applyExtendTransformation(Construct, AutoMedType, Object[], String, String) - 
Method in class uk.ac.ic.doc.automed.reps.Schema
 -  
 - applyExtendTransformation(Construct, String, String, String) - 
Method in class uk.ac.ic.doc.automed.reps.Schema
 -  
 - applyExtendTransformation(Construct, Object[], String, String, String) - 
Method in class uk.ac.ic.doc.automed.reps.Schema
 - Returns the 
Schema which is the result of applying an EXTEND
 transformation.
 - applyGrowthMapping(Schema) - 
Method in class uk.ac.ic.doc.automed.modelmanagement.mapping.MappingTranslate
 -  
 - applyGrowthTransformation(Schema, String) - 
Method in class uk.ac.ic.doc.automed.modelmanagement.mapping.MappingTranslate
 - Create the transformations for this mapping
 - applyIdent(Object[]) - 
Static method in class uk.ac.ic.doc.automed.editor.Gui
 -  
 - applyIdentTransformation(Schema) - 
Method in class uk.ac.ic.doc.automed.reps.Schema
 - Links this schema to another schema which should have exactly the
 same structure, i.e.
 - applyMany2ManyTransformation(Schema, List, List, String, boolean) - 
Method in class uk.ac.bbk.dcs.automed.pathgen.PathwayGeneratorMatch
 -  
 - applyMany2ManyTransformation(Schema, List, List, boolean) - 
Method in class uk.ac.bbk.dcs.automed.pathgen.PathwayGeneratorMatchRelational
 -  
 - applyMany2ManyTransformation(Schema, List, List, boolean) - 
Method in class uk.ac.bbk.dcs.automed.pathgen.PathwayGeneratorMatchXMLDSS
 -  
 - applyMany2OneTransformation(Schema, List, Element, String, boolean) - 
Method in class uk.ac.bbk.dcs.automed.pathgen.PathwayGeneratorMatch
 -  
 - applyMany2OneTransformation(Schema, List, Element, boolean) - 
Method in class uk.ac.bbk.dcs.automed.pathgen.PathwayGeneratorMatchRelational
 -  
 - applyMany2OneTransformation(Schema, List, Element, boolean) - 
Method in class uk.ac.bbk.dcs.automed.pathgen.PathwayGeneratorMatchXMLDSS
 -  
 - applyOne2ManyTransformation(Schema, Element, List, String, boolean) - 
Method in class uk.ac.bbk.dcs.automed.pathgen.PathwayGeneratorMatch
 -  
 - applyOne2ManyTransformation(Schema, Element, List, boolean) - 
Method in class uk.ac.bbk.dcs.automed.pathgen.PathwayGeneratorMatchRelational
 -  
 - applyOne2ManyTransformation(Schema, Element, List, boolean) - 
Method in class uk.ac.bbk.dcs.automed.pathgen.PathwayGeneratorMatchXMLDSS
 -  
 - applyOne2OneTransformation(Schema, Element, Element, String, boolean) - 
Method in class uk.ac.bbk.dcs.automed.pathgen.PathwayGeneratorMatch
 -  
 - applyOne2OneTransformation(Schema, Element, Element, boolean) - 
Method in class uk.ac.bbk.dcs.automed.pathgen.PathwayGeneratorMatchRelational
 -  
 - applyOne2OneTransformation(Schema, Element, Element, boolean) - 
Method in class uk.ac.bbk.dcs.automed.pathgen.PathwayGeneratorMatchXMLDSS
 -  
 - applyOverlapnessTransformations(SchemaObject, SchemaObject[], HashMap, HashMap, SchemaObject, SchemaObject[], HashMap, HashMap, SchemaElementPair[]) - 
Method in class uk.ac.ic.doc.automed.matching.SQLIntegrator
 -  
 - applyPathway(Transformation[], Schema) - 
Static method in class uk.ac.bbk.dcs.automed.evolution.EvolutionUtility
 - This method applies an array of transformations passed to the passed schema and returns the final schema.
 - applyPathwayTransformation(Schema, Transformation, Schema, Schema) - 
Static method in class uk.ac.bbk.dcs.automed.evolution.EvolutionUtility
 - This method applies a single transformation to the passed schema and returns the newly created schema.
 - applyPatternRules(PatternRule[], Cell) - 
Method in class uk.ac.bbk.dcs.automed.qproc.optimise.optimisers.ComprehensionDistributor
 - Applies rules that split generators such as "gen $x ($y ++ $z)".
 - applyPattIntersectB(Cell) - 
Method in class uk.ac.bbk.dcs.automed.qproc.optimise.optimisers.CollectionOperatorReorganiser
 -  
 - applyPattOneMonusOnePlus(Cell) - 
Method in class uk.ac.bbk.dcs.automed.qproc.optimise.optimisers.CollectionOperatorReorganiser
 -  
 - applyPattOneMonusTwoPlus(Cell) - 
Method in class uk.ac.bbk.dcs.automed.qproc.optimise.optimisers.CollectionOperatorReorganiser
 -  
 - applyPattOnePlusOneMonusOnePlus(Cell) - 
Method in class uk.ac.bbk.dcs.automed.qproc.optimise.optimisers.CollectionOperatorReorganiser
 -  
 - applyPattPlusB(Cell) - 
Method in class uk.ac.bbk.dcs.automed.qproc.optimise.optimisers.CollectionOperatorReorganiser
 -  
 - applyPattThreeIntersect(Cell) - 
Method in class uk.ac.bbk.dcs.automed.qproc.optimise.optimisers.CollectionOperatorReorganiser
 -  
 - applyPattThreeMonus(Cell) - 
Method in class uk.ac.bbk.dcs.automed.qproc.optimise.optimisers.CollectionOperatorReorganiser
 -  
 - applyPattThreePlus(Cell) - 
Method in class uk.ac.bbk.dcs.automed.qproc.optimise.optimisers.CollectionOperatorReorganiser
 -  
 - applyPattThreeUnion(Cell) - 
Method in class uk.ac.bbk.dcs.automed.qproc.optimise.optimisers.CollectionOperatorReorganiser
 -  
 - applyPattTwoIntersectA(Cell) - 
Method in class uk.ac.bbk.dcs.automed.qproc.optimise.optimisers.CollectionOperatorReorganiser
 -  
 - applyPattTwoMonus(Cell) - 
Method in class uk.ac.bbk.dcs.automed.qproc.optimise.optimisers.CollectionOperatorReorganiser
 -  
 - applyPattTwoMonusOnePlus(Cell) - 
Method in class uk.ac.bbk.dcs.automed.qproc.optimise.optimisers.CollectionOperatorReorganiser
 -  
 - applyPattTwoPlusA(Cell) - 
Method in class uk.ac.bbk.dcs.automed.qproc.optimise.optimisers.CollectionOperatorReorganiser
 -  
 - applyPattTwoPlusOneMonus(Cell) - 
Method in class uk.ac.bbk.dcs.automed.qproc.optimise.optimisers.CollectionOperatorReorganiser
 -  
 - applyPattTwoUnionA(Cell) - 
Method in class uk.ac.bbk.dcs.automed.qproc.optimise.optimisers.CollectionOperatorReorganiser
 -  
 - applyPattUnionB(Cell) - 
Method in class uk.ac.bbk.dcs.automed.qproc.optimise.optimisers.CollectionOperatorReorganiser
 -  
 - applyRenameTransformation(Schema, Element, boolean) - 
Method in class uk.ac.bbk.dcs.automed.pathgen.PathwayGeneratorBAV
 -  
 - applyRenameTransformation(Schema, String, String, boolean) - 
Method in class uk.ac.bbk.dcs.automed.pathgen.PathwayGeneratorBAVRelational
 -  
 - applyRenameTransformation(Schema, String, String, boolean) - 
Static method in class uk.ac.bbk.dcs.automed.pathgen.PathwayGeneratorXMLDSSUtility
 -  
 - applyRenameTransformation(SchemaObject, Object[]) - 
Method in class uk.ac.ic.doc.automed.reps.Schema
 - Returns the 
Schema which is the result of applying a RENAME
 transformation.
 - applyRenameTransformation(SchemaObject, Object[], String) - 
Method in class uk.ac.ic.doc.automed.reps.Schema
 - Returns the 
Schema which is the result of applying a RENAME
 transformation.
 - applyRetract(Object[]) - 
Static method in class uk.ac.ic.doc.automed.editor.Gui
 -  
 - applyRuleA(Cell) - 
Method in class uk.ac.bbk.dcs.automed.qproc.optimise.optimisers.EmptyJoinOptimiser
 -  
 - applyRuleB(Cell) - 
Method in class uk.ac.bbk.dcs.automed.qproc.optimise.optimisers.EmptyJoinOptimiser
 -  
 - applyRules(Cell) - 
Method in class uk.ac.bbk.dcs.automed.qproc.optimise.optimisers.ChooseOptimiser
 - Appies the three ChooseOptimiser rules, each rule has its own predicates.
 - applyRules(Cell) - 
Method in class uk.ac.bbk.dcs.automed.qproc.optimise.optimisers.CollectionOperatorReorganiser
 -  
 - applyrules(Cell) - 
Method in class uk.ac.bbk.dcs.automed.qproc.optimise.optimisers.CollectionSimplification
 -  
 - applyRules(PatternRule[], Cell) - 
Method in class uk.ac.bbk.dcs.automed.qproc.optimise.optimisers.ComprehensionDistributor
 -  
 - applySCA(String) - 
Static method in class uk.ac.bbk.dcs.automed.xml.sca.SchemaConformanceAlgorithm
 -  
 - applyShrinkMapping(Schema) - 
Method in class uk.ac.ic.doc.automed.modelmanagement.mapping.MappingTranslate
 -  
 - applyShrinkTransformation(Schema, String) - 
Method in class uk.ac.ic.doc.automed.modelmanagement.mapping.MappingTranslate
 - Create the transformations for this mapping
 - applyThreshold(double) - 
Method in interface it.unibo.cs.belief.MassPotential
 - Deletes all mass assignments under the specified value.
 - applyThreshold(double) - 
Method in class it.unibo.cs.belief.TreeMassPotential
 -  
 - applyTransformation(Schema, Element, boolean) - 
Method in class uk.ac.bbk.dcs.automed.pathgen.PathwayGenerator
 -  
 - applyTransformation(Schema, Element, boolean) - 
Method in class uk.ac.bbk.dcs.automed.pathgen.PathwayGeneratorBAV
 -  
 - applyTransformation(Schema, Element, boolean) - 
Method in class uk.ac.bbk.dcs.automed.pathgen.PathwayGeneratorCleansing
 -  
 - applyTransformation(Schema, Element, boolean) - 
Method in class uk.ac.bbk.dcs.automed.pathgen.PathwayGeneratorMatch
 -  
 - applyTransformation(Transformation, int, int) - 
Method in class uk.ac.ic.doc.automed.reps.Schema
 - Apply the given transformation to the contents of the schema.
 - applyTransformationsForDisjointnessRestructuring(SchemaObject, SchemaObject, SchemaObject[], SchemaObject[], HashMap, HashMap, SchemaObject, SchemaObject, SchemaObject[], SchemaObject[], HashMap, HashMap) - 
Method in class uk.ac.ic.doc.automed.matching.SQLIntegrator
 -  
 - applyTransformationsForNameConflictRemoval(SchemaObject, SchemaObject, SchemaObject[], SchemaObject[], HashMap, HashMap, SchemaObject, SchemaObject, SchemaObject[], SchemaObject[], HashMap, HashMap) - 
Method in class uk.ac.ic.doc.automed.matching.SQLIntegrator
 -  
 - applyTransformationsForOverlapnessRestructuring(SchemaObject, SchemaObject, SchemaObject[], SchemaObject[], HashMap, HashMap, SchemaObject, SchemaObject, SchemaObject[], SchemaObject[], HashMap, HashMap) - 
Method in class uk.ac.ic.doc.automed.matching.SQLIntegrator
 -  
 - applyTransformationsForSubsumptionRestructuring(SchemaObject, SchemaObject[], HashMap, HashMap, SchemaObject, SchemaObject[], HashMap, HashMap) - 
Method in class uk.ac.ic.doc.automed.matching.SQLIntegrator
 -  
 - appQueue - 
Variable in class uk.ac.ic.doc.automed.p2p.gui.graph.events.EventQueueManager
 -  
 - AppToolKit - Class in uk.ac.ic.doc.automed.p2p
 -  
 - AppToolKit() - 
Constructor for class uk.ac.ic.doc.automed.p2p.AppToolKit
 - Creates a new instance of AppToolKit
 - AppToolKit.NodeConfig - Class in uk.ac.ic.doc.automed.p2p
 - Inner class to define a server configuration
 - AppToolKit.NodeConfig(String, String, String, int, int, int, int, int) - 
Constructor for class uk.ac.ic.doc.automed.p2p.AppToolKit.NodeConfig
 -  
 - AppToolKit.NodeConfig(String, Properties) - 
Constructor for class uk.ac.ic.doc.automed.p2p.AppToolKit.NodeConfig
 - Alternatively, we can create a config object with loads of properties
 
 
 and then use getter methods to access them.
 - arcDrawable - 
Variable in class uk.ac.ic.doc.automed.reps.Construct
 -  
 - area - 
Variable in class uk.ac.ic.doc.automed.p2p.gui.TextConsole
 -  
 - areAllRelational(List) - 
Method in class uk.ac.bbk.dcs.automed.qproc.optimise.optimisers.EmptyJoinOptimiser
 -  
 - areAllToLayoutObjLocked() - 
Method in class uk.ac.ic.doc.automed.editor.autolayout.AutoLayoutERObject
 -  
 - areRelated(SchemaObject[], SchemaObject[], SemanticRelationship, boolean) - 
Method in class uk.ac.ic.doc.automed.matching.Integrator
 - Returns a list of 
SchemaElementPair arrays with all the combinations of related schema elements.
 - areRelativesMaximal() - 
Method in class uk.ac.ic.doc.automed.reps.Network
 -  
 - areSchemasIntegrated() - 
Method in class uk.ac.ic.doc.automed.editor.MatchingTool
 -  
 - arg - 
Variable in class uk.ac.bbk.dcs.automed.qproc.annotate.grammars.sql.IQLForSQLQueryParser.JJCalls
 -  
 - arg - 
Variable in class uk.ac.bbk.dcs.automed.qproc.evaluate.EvaluatorEvaluateThread
 -  
 - arg - 
Variable in class uk.ac.bbk.dcs.automed.qproc.evaluate.EvaluatorWHNFThread
 -  
 - arg - 
Variable in class uk.ac.bbk.dcs.automed.qproc.translators.sql.SQL2IQL.JJCalls
 -  
 - arg - 
Variable in class uk.ac.bbk.dcs.automed.qproc.translators.xquery.XQuery2IQL.JJCalls
 -  
 - arg1 - 
Variable in class uk.ac.bbk.dcs.automed.qproc.optimise.optimisers.CollectionOperatorReorganiser
 -  
 - arg2 - 
Variable in class uk.ac.bbk.dcs.automed.qproc.optimise.optimisers.CollectionOperatorReorganiser
 -  
 - argCID - 
Variable in class uk.ac.ic.doc.automed.reps.ConstructScheme
 -  
 - argConstruct - 
Variable in class uk.ac.ic.doc.automed.reps.ConstructScheme
 -  
 - args - 
Variable in class uk.ac.ic.doc.automed.p2p.qproc.funcs.Function
 -  
 - arithFuncs - 
Static variable in class uk.ac.ic.doc.automed.p2p.gui.expressionBuilder.FunctionBuilder
 -  
 - arithmeticFunction() - 
Method in class uk.ac.bbk.dcs.automed.qproc.translators.xquery.XQuery2IQL
 -  
 - arithmeticFunctions - 
Variable in class uk.ac.bbk.dcs.automed.xml.wrappers.IQL2XQuery
 - Contains the IQL arithmetic functions and their SQL counterparts.
 - ArithmeticFunctionTable - Class in uk.ac.bbk.dcs.automed.qproc.functions.arithmetic
 - Class that creates a FunctionTable containing all currently implemented functions.
 - ArithmeticFunctionTable() - 
Constructor for class uk.ac.bbk.dcs.automed.qproc.functions.arithmetic.ArithmeticFunctionTable
 -  
 - arithmeticOp() - 
Static method in class uk.ac.bbk.dcs.automed.qproc.translators.sql.SQL2IQL
 -  
 - arithmOp() - 
Method in class uk.ac.bbk.dcs.automed.qproc.translators.xquery.XQuery2IQL
 -  
 - arithmOpMap - 
Variable in class uk.ac.bbk.dcs.automed.qproc.translators.xquery.XQuery2IQL
 -  
 - arity - 
Variable in class uk.ac.bbk.dcs.automed.qproc.functions.BuiltInFunction
 -  
 - arity - 
Variable in class uk.ac.bbk.dcs.automed.qproc.optimise.FoldFunction
 -  
 - array - 
Variable in class uk.ac.ic.doc.automed.editor.autolayout.Queue
 -  
 - array - 
Variable in class uk.ac.ic.doc.automed.p2p.gui.RecordScroller
 -  
 - ArrayKeyMap - Class in uk.ac.ic.doc.automed.util
 -  
 - ArrayKeyMap(int) - 
Constructor for class uk.ac.ic.doc.automed.util.ArrayKeyMap
 -  
 - ArrayObjectList - Class in uk.ac.ic.doc.automed.util
 -  
 - ArrayObjectList(int) - 
Constructor for class uk.ac.ic.doc.automed.util.ArrayObjectList
 -  
 - ARROW - 
Static variable in class uk.ac.ic.doc.automed.p2p.editor.KQueryMain.ExecuteMouseDragListener
 -  
 - arrowSize - 
Static variable in class uk.ac.ic.doc.automed.editor.drawables.DrawERGeneralisationArc
 -  
 - arrowSize - 
Static variable in class uk.ac.ic.doc.automed.editor.drawables.DrawRDFSSubClassArc
 -  
 - arrowSize - 
Static variable in class uk.ac.ic.doc.automed.editor.drawables.DrawRecursiveArc
 -  
 - arrowSize - 
Static variable in class uk.ac.ic.doc.automed.editor.drawables.DrawUMLGeneralisationArc
 -  
 - arrowSize - 
Static variable in class uk.ac.ic.doc.automed.editor.drawables.DrawXSArc
 -  
 - AS - 
Static variable in interface uk.ac.bbk.dcs.automed.qproc.translators.xquery.XQuery2IQLConstants
 -  
 - ASC - 
Static variable in class uk.ac.ic.doc.automed.modelmanagement.modeldef.SQLModelDef
 - String used to represent ASC indexes in schemes
 - ASG - Class in uk.ac.bbk.dcs.automed.qproc.iql
 - Every IQL query is internally represented as an Abstract Syntax Graph (ASG).
 - ASG() - 
Constructor for class uk.ac.bbk.dcs.automed.qproc.iql.ASG
 -  
 - ASG(Cell) - 
Constructor for class uk.ac.bbk.dcs.automed.qproc.iql.ASG
 -  
 - ASG(Cell, boolean) - 
Constructor for class uk.ac.bbk.dcs.automed.qproc.iql.ASG
 - Creates a new ASG object.
 - ASG(String) - 
Constructor for class uk.ac.bbk.dcs.automed.qproc.iql.ASG
 -  
 - ASG(File) - 
Constructor for class uk.ac.bbk.dcs.automed.qproc.iql.ASG
 -  
 - ASG_COLLECTION_SIZE_ITEMS - 
Static variable in class uk.ac.bbk.dcs.automed.qproc.functions.internal.CallToWrapper
 - Used if 
#getCollectionSize(ASG, int) is to return the number of items in the collection
 - ASG_COLLECTION_SIZE_ITEMS - 
Static variable in class uk.ac.bbk.dcs.automed.qproc.iql.Cell
 -  
 - ASG_COLLECTION_SIZE_ITEMS - 
Static variable in class uk.ac.bbk.dcs.automed.qproc.iql.IQLUtility
 - Used if 
#getCollectionSize(ASG, int) is to return the number of
 items in the collection
 - ASG_COLLECTION_SIZE_ITEMS_TIMES_TUPLE_TYPE - 
Static variable in class uk.ac.bbk.dcs.automed.qproc.functions.internal.CallToWrapper
 - Used if 
#getCollectionSize(ASG, int) is to return the number of items in the collection, times the tuple type.
 - ASG_COLLECTION_SIZE_ITEMS_TIMES_TUPLE_TYPE - 
Static variable in class uk.ac.bbk.dcs.automed.qproc.iql.Cell
 -  
 - ASG_COLLECTION_SIZE_ITEMS_TIMES_TUPLE_TYPE - 
Static variable in class uk.ac.bbk.dcs.automed.qproc.iql.IQLUtility
 - Used if 
#getCollectionSize(ASG, int) is to return the number of
 items in the collection, times the tuple type.
 - asgArea - 
Variable in class uk.ac.ic.doc.automed.editor.IQLTool
 -  
 - ASGComprehension - Class in uk.ac.bbk.dcs.automed.qproc.iql
 - Deprecated. This class will be decommissioned. Methods of this class have been moved to ASG
 - ASGComprehension() - 
Constructor for class uk.ac.bbk.dcs.automed.qproc.iql.ASGComprehension
 - Deprecated. methods of this class have been moved to ASG - this class will be decommissioned
 - ASGComprehension(Cell) - 
Constructor for class uk.ac.bbk.dcs.automed.qproc.iql.ASGComprehension
 - Deprecated. methods of this class have been moved to ASG - this class will be decommissioned
 - ASGExplore - Class in utils
 -  
 - ASGExplore() - 
Constructor for class utils.ASGExplore
 -  
 - asgfile - 
Variable in class uk.ac.ic.doc.automed.modelmanagement.modeldef.ASGFileModelDef
 -  
 - ASGFileModelDef - Class in uk.ac.ic.doc.automed.modelmanagement.modeldef
 -  
 - ASGFileModelDef() - 
Constructor for class uk.ac.ic.doc.automed.modelmanagement.modeldef.ASGFileModelDef
 - Creates a new instance of CSVWrapperFactory
 - ASGFileWrapper - Class in uk.ac.ic.doc.automed.wrappers
 - ASGFileWrapper.java
 - ASGFileWrapper() - 
Constructor for class uk.ac.ic.doc.automed.wrappers.ASGFileWrapper
 - Creates a new, empty instance of XMLSchemaWrapper
 - ASGFileWrapper(AccessMethod, String) - 
Constructor for class uk.ac.ic.doc.automed.wrappers.ASGFileWrapper
 - This constructor is used when querying the schema
 - ASGFileWrapperFactory - Class in uk.ac.ic.doc.automed.wrappers
 - ASGFileWrapperFactory.java
 - ASGFileWrapperFactory() - 
Constructor for class uk.ac.ic.doc.automed.wrappers.ASGFileWrapperFactory
 - Creates a new instance of ASGFileWrapperFactory
 - ASGMetadataException - Exception in uk.ac.ic.doc.automed.qproc
 - ASGMetadataException.java
 - ASGMetadataException(String) - 
Constructor for exception uk.ac.ic.doc.automed.qproc.ASGMetadataException
 - Creates an ASGMetadataException when there has been no
 Exception that caused the error to discovered.
 - ASGMetadataException(String, Exception) - 
Constructor for exception uk.ac.ic.doc.automed.qproc.ASGMetadataException
 - Creates an NotFoundException when it is acting as
 a wrapper for other Exceptions.
 - ASGObjectBuilder - Class in uk.ac.ic.doc.automed.p2p.tree
 -  
 - ASGObjectBuilder(Root) - 
Constructor for class uk.ac.ic.doc.automed.p2p.tree.ASGObjectBuilder
 - Creates a new instance of SchemaObjectBuilder
 - ASGResult - Class in uk.ac.bbk.dcs.automed.qproc.iql
 - The ASGResult class represents a stream of data being returned from a
 data source.
 - ASGResult(QueryProcessor) - 
Constructor for class uk.ac.bbk.dcs.automed.qproc.iql.ASGResult
 - Pass in a 
QueryProcessor that has been already had
 QueryProcessor.processIncrementally(uk.ac.bbk.dcs.automed.qproc.iql.ASG, uk.ac.ic.doc.automed.reps.Schema, uk.ac.ic.doc.automed.reps.Schema[], java.lang.String, uk.ac.bbk.dcs.automed.qproc.QueryProcessorConfiguration) called, and 
 create a ASGResult to contain the result coming back
 - ASGResult(ASG, Schema, Schema[], String, QueryProcessorConfiguration) - 
Constructor for class uk.ac.bbk.dcs.automed.qproc.iql.ASGResult
 - Set up a new 
QueryProcessor inside a ASGResult.
 - ASGResultSet - Class in uk.ac.ic.doc.automed.p2p.qproc
 - Represents an ASG result set that has methods for easy manipulation of the
 
 results (much like an iterator)
 - ASGResultSet(ASG) - 
Constructor for class uk.ac.ic.doc.automed.p2p.qproc.ASGResultSet
 - Create an instance of the result set, initialising it using a query
 - asgResultSetMap - 
Static variable in class uk.ac.ic.doc.automed.wrappers.SQLWrapper
 - Caches 
ResultSet objects during incremental evaluation of query
 - ASGResultTable - Class in uk.ac.ic.doc.automed.p2p.gui
 -  
 - ASGResultTable() - 
Constructor for class uk.ac.ic.doc.automed.p2p.gui.ASGResultTable
 -  
 - ASGResultTable(boolean) - 
Constructor for class uk.ac.ic.doc.automed.p2p.gui.ASGResultTable
 -  
 - ASGToSearchQuery(ASG) - 
Method in class uk.ac.ic.doc.automed.p2p.wrappers.GoogleScholarWrapper
 - Convert an ASG query to a SearchQuery object by basically converting the
 query predicates into the appropriate GET parameters
 - ASK - 
Static variable in class uk.ac.ic.doc.automed.p2p.protocol.P2PConstants
 - performative
 - askDHTContacts() - 
Method in class uk.ac.ic.doc.automed.p2p.protocol.NSP
 - Peer->DSP: ask for a list of initial contacts
 - askDomainContacts() - 
Method in class uk.ac.ic.doc.automed.p2p.protocol.NSP
 - Peer->DSP: a peer ask its DSP for a map of all contacts of all high-level
 domains
 - askDomainContacts(DirectoryServicePeer) - 
Method in class uk.ac.ic.doc.automed.p2p.protocol.NSP
 - DSP(child)->DSP: A DSP ask its parent DSP a list of higher-level domain
 contacts
 - askDomainKeywords(String) - 
Method in class uk.ac.ic.doc.automed.p2p.protocol.SICP
 - Peer->DSP: ask a dsp for the keyword map of this domain
 
 if schema is specified then return keywords for a specific schema otherwise
 return all keywords
 - askPathwayToSourceAbstract(PeerDescription, String) - 
Method in class uk.ac.ic.doc.automed.p2p.protocol.SICP
 - DS->Peer: Directory service ask peer for pathways abstraction
 - askPeerDescription(String, String) - 
Method in class uk.ac.ic.doc.automed.p2p.protocol.SICP
 - Peer->DSP: ask for the description of a peer
 - askPeerSchemaAssociation(String) - 
Method in class uk.ac.ic.doc.automed.p2p.protocol.SICP
 - Peer -> DSP: similar to {#requestPeerSchemaAssociations(String peer, String
 schema)} Ask the dsp for a list of peer-to-schema associations but return
 the first one that is found
 - askPeerSchemaAssociations(String, String) - 
Method in class uk.ac.ic.doc.automed.p2p.protocol.SICP
 - Peer -> DSP: Ask the dsp for a list of peer-to-schema associations.
 - askPeersImplementingSchema(String, Collection) - 
Method in class uk.ac.ic.doc.automed.p2p.protocol.SICP
 - Find all peers that implement a public schema which are not in a given set
 of peers (optional)
 - askRelatedKeywords(String) - 
Method in class uk.ac.ic.doc.automed.p2p.protocol.SICP
 - Peer->DSP: ask a dsp for the related keywords of a keyword
 - ASKS - 
Static variable in interface uk.ac.ic.doc.automed.reasoner.DIGVocabulary
 -  
 - askSchemaList(String, PeerProcessDescription) - 
Method in class uk.ac.ic.doc.automed.p2p.protocol.SICP
 - Peer->Peer: Peer asks another peer for a schema list
 - askToExecuteWorkflow(PeerProcessDescription, P2PWorkflow, boolean) - 
Method in class uk.ac.ic.doc.automed.p2p.protocol.REXEProtocol
 - Peer->Peer: a peer asking another peer to execute a workflow
 - askToPublishSchema(String, String, PeerProcessDescription) - 
Method in class uk.ac.ic.doc.automed.p2p.protocol.REXEProtocol
 - Peer->Peer: Peer asks another peer to publish a schema to the directory
 service
 - askToWrapSchema(String, PeerProcessDescription) - 
Method in class uk.ac.ic.doc.automed.p2p.protocol.SICP
 - Peer->Peer: Peer asks another peer to wrap a schema from the directroy
 service
 - asPref - 
Variable in class uk.ac.bbk.dcs.automed.wrappers.IQL2SQLTranslator
 - If true, then use the AS keyword for variables in the SELECT CLAUSE
 - assemblePackets(Vector, int) - 
Static method in class uk.ac.ic.doc.automed.p2p.util.Util
 - Assemble UDP fragments together
 - assertProtocol(String) - 
Static method in class uk.ac.ic.doc.automed.reps.Protocol
 - Returns the 
Protocol with a certain name, creating it if
 it does not already exist..
 - assertRow(int, String, String) - 
Static method in class uk.ac.ic.doc.automed.AccessMethodPropertyRow
 -  
 - assertRow(int, String, String) - 
Static method in class uk.ac.ic.doc.automed.ConstructConstraintRow
 -  
 - assertRow(int, int, int, Integer, String) - 
Static method in class uk.ac.ic.doc.automed.ConstructPropertyRow
 -  
 - assertRow(int, String, String) - 
Static method in class uk.ac.ic.doc.automed.ConstructTypeRow
 -  
 - assertRow(int, int, String, int, int) - 
Static method in class uk.ac.ic.doc.automed.ObjectRow
 -  
 - assertRow(int, int, String, int) - 
Static method in class uk.ac.ic.doc.automed.ObjectRow
 -  
 - assertRow(int, int, int, Integer, String) - 
Static method in class uk.ac.ic.doc.automed.SchemaObjectPropertyRow
 -  
 - assertRow(int, String, String) - 
Static method in class uk.ac.ic.doc.automed.SchemaPropertyRow
 -  
 - assertRow(int, String, int, int) - 
Static method in class uk.ac.ic.doc.automed.SchemaRow
 -  
 - assertRow(int, int, int) - 
Static method in class uk.ac.ic.doc.automed.SchemeRow
 -  
 - assertRow(int, int, String, String) - 
Static method in class uk.ac.ic.doc.automed.TransformationPropertyRow
 -  
 - assertRow(String, int, int, int, int, String, String) - 
Static method in class uk.ac.ic.doc.automed.TransformationRow
 -  
 - assertType(String, String) - 
Method in class uk.ac.ic.doc.automed.reps.TypeHierarchy
 - Make sure @param typeName is in the type hierarchy.
 - ASSIGN - 
Static variable in interface uk.ac.bbk.dcs.automed.qproc.translators.xquery.XQuery2IQLConstants
 -  
 - assign(RecordStream) - 
Method in class uk.ac.ic.doc.automed.p2p.util.topk.JNode
 - Set this variable to be assigned and also update the upper bound score of
 the input stream bound to this variable based on the score of the current
 tuple.
 - assigned - 
Variable in class uk.ac.ic.doc.automed.p2p.util.topk.JNode
 -  
 - assignNextMatch(JNode) - 
Method in class uk.ac.ic.doc.automed.p2p.util.topk.JStar
 - Shift and assign the variable pointer to the next tuple in the stream which
 is to be processed.
 Return true if it is a valid assignment, or
 false if otherwise.
 - assignSLIs(Document) - 
Static method in class uk.ac.bbk.dcs.automed.xml.utilities.UIDUtility
 - Assigns SLIs to the schema document supplied.
 - assignSocket(Socket) - 
Method in class uk.ac.ic.doc.automed.p2p.communication.AbstractDaemon
 - Assigns a socket to a Worker.
 - assignSocket(Socket) - 
Method in class uk.ac.ic.doc.automed.p2p.communication.TCPServer
 - Assigns a socket to a Worker.
 - assignUID(TreeNode) - 
Method in class uk.ac.bbk.dcs.automed.xml.relational.XMLDSSFromRDB
 -  
 - assignUIDs(Forest) - 
Method in class uk.ac.bbk.dcs.automed.xml.relational.XMLDSSFromRDB
 -  
 - association - 
Variable in class uk.ac.ic.doc.automed.modelmanagement.modeldef.UMLModelDef
 -  
 - asString(Document) - 
Static method in class uk.ac.ic.doc.automed.p2p.util.XmlHandler
 -  
 - AsynchThread - Class in uk.ac.ic.doc.automed.util.thread
 -  
 - AsynchThread(String, Threadable) - 
Constructor for class uk.ac.ic.doc.automed.util.thread.AsynchThread
 - Creates a new instance of TimedThread
 - at(int) - 
Method in class uk.ac.bbk.dcs.automed.qproc.functions.ModifiedArray
 -  
 - AT - 
Static variable in interface uk.ac.bbk.dcs.automed.qproc.translators.xquery.XQuery2IQLConstants
 -  
 - AT - 
Static variable in class uk.ac.ic.doc.automed.wrappers.BibTeXWrapper
 -  
 - AT_LEAST_ONE - 
Static variable in class uk.ac.ic.doc.automed.editor.CommandLineDriver
 -  
 - atDebugLevel(int) - 
Static method in class uk.ac.ic.doc.automed.editor.XMLSchemaEditor
 - Determine is debug is at or above a certain level.
 - atDebugLevel(int) - 
Static method in class uk.ac.ic.doc.automed.STR
 - Return true if the debug level set by 
STR.setDebugLevel(int) is at
 least at a certain level.
 - atDebugLevel(int) - 
Static method in class uk.ac.ic.doc.automed.util.Debugger
 - Return true if the debug level set by 
Debugger.setDebugLevel(int) is
 at least at a certain level.
 - atDebugLevel(int) - 
Static method in class uk.ac.ic.doc.automed.wrappers.AutoMedWrapper
 - Determine is debug is at or above a certain level.
 - ATLEAST - 
Static variable in interface uk.ac.ic.doc.automed.reasoner.DIGVocabulary.Language
 -  
 - atm - 
Variable in class uk.ac.ic.doc.automed.editor.WrapperTool
 -  
 - ATMOST - 
Static variable in interface uk.ac.ic.doc.automed.reasoner.DIGVocabulary.Language
 -  
 - atMost1TargetPathElementRelIs1n(SRAElementRelMappingItem, Map) - 
Method in class uk.ac.bbk.dcs.automed.xml.sra.SRAPhase1
 -  
 - atomic - 
Variable in class uk.ac.ic.doc.automed.editor.PatternWritingTool
 -  
 - atomic - 
Variable in class uk.ac.ic.doc.automed.matching.RelationshipExtractor
 -  
 - atomic - 
Static variable in class uk.ac.ic.doc.automed.matching.SchemaElement
 -  
 - atomicList - 
Variable in class uk.ac.ic.doc.automed.editor.PatternWritingTool
 -  
 - AtomicViewMap - Class in uk.ac.bbk.dcs.automed.qproc.reformulate
 - This class creates atomic views from the Automed Transformations.
 - AtomicViewMap(Schema, Schema, QueryProcessorConfiguration, int) - 
Constructor for class uk.ac.bbk.dcs.automed.qproc.reformulate.AtomicViewMap
 - Constructs a new 
AtomicViewMap object for the input source and target schemas, then populates it.
 - atSectionDebugLevel(int, int) - 
Static method in class uk.ac.ic.doc.automed.STR
 - Tests whether the section of code has been set to at least the debug level
 specified.
 - atSectionDebugLevel(int, int) - 
Static method in class uk.ac.ic.doc.automed.util.Debugger
 - Tests whether the section of code has been set to at least the
 debug level specified.
 - atShape - 
Variable in class uk.ac.ic.doc.automed.p2p.gui.graph.GraphComponent
 -  
 - att - 
Variable in class uk.ac.ic.doc.automed.wrappers.XMLSchemaWrapper
 -  
 - attachedElements - 
Variable in class uk.ac.ic.doc.automed.matching.SchemaElement
 -  
 - attachParent(AutoLayoutTreeObject, int) - 
Static method in class uk.ac.ic.doc.automed.editor.autolayout.AutoLayoutTreeObject
 - Attaches the specified node to its children, setting offsets.
 - attNum - 
Static variable in class uk.ac.bbk.dcs.automed.xml.wrappers.XMLDSSFromXMLSchema
 -  
 - attrCons - 
Variable in class uk.ac.bbk.dcs.automed.xml.sra.old.xmldssGraph.XMLDSSRestructurer
 -  
 - attrCons - 
Variable in class uk.ac.bbk.dcs.automed.xml.sra.old.XMLRestructurer
 - Constructs needed for transformations.
 - attrCons - 
Variable in class uk.ac.bbk.dcs.automed.xml.sra.SchemaRestructuringAlgorithm
 -  
 - ATTRIB_DATATYPE - 
Static variable in class uk.ac.ic.doc.automed.p2p.son.index.Indexer
 -  
 - ATTRIB_K2NODE - 
Static variable in class uk.ac.ic.doc.automed.p2p.son.index.Indexer
 -  
 - ATTRIB_MODEL - 
Static variable in class uk.ac.ic.doc.automed.p2p.son.index.Indexer
 -  
 - ATTRIB_NAME - 
Static variable in class uk.ac.ic.doc.automed.p2p.son.index.Indexer
 -  
 - ATTRIB_PEER - 
Static variable in class uk.ac.ic.doc.automed.p2p.son.index.Indexer
 -  
 - ATTRIB_POS - 
Static variable in class uk.ac.ic.doc.automed.p2p.son.index.Indexer
 -  
 - ATTRIB_RANGE - 
Static variable in class uk.ac.ic.doc.automed.p2p.son.index.Indexer
 -  
 - attribute - 
Variable in class uk.ac.bbk.dcs.automed.owl.TranslateRelationalSchemaToOWLLite
 -  
 - attribute - 
Variable in class uk.ac.bbk.dcs.automed.xml.wrappers.XMLWrapperFactory
 -  
 - attribute - 
Static variable in class uk.ac.bbk.dcs.automed.xml.XMLConstants
 -  
 - attribute - 
Variable in class uk.ac.ic.doc.automed.modelmanagement.modeldef.BibTeXModelDef
 -  
 - attribute - 
Variable in class uk.ac.ic.doc.automed.modelmanagement.modeldef.EERModelDef
 -  
 - attribute - 
Variable in class uk.ac.ic.doc.automed.modelmanagement.modeldef.ERModelDef
 -  
 - attribute - 
Variable in class uk.ac.ic.doc.automed.modelmanagement.modeldef.UMLModelDef
 -  
 - attribute - 
Variable in class uk.ac.ic.doc.automed.modelmanagement.modeldef.XMLSchemaModelDef
 -  
 - attribute - 
Variable in class uk.ac.ic.doc.automed.modelmanagement.modelgen.HDMToEER
 -  
 - attribute - 
Variable in class uk.ac.ic.doc.automed.modelmanagement.modelgen.HDMToER
 -  
 - attribute - 
Variable in class uk.ac.ic.doc.automed.modelmanagement.modelgen.HDMToXMLSchema
 -  
 - ATTRIBUTE - 
Static variable in interface uk.ac.ic.doc.automed.reasoner.DIGVocabulary.Language
 -  
 - attribute - 
Variable in class uk.ac.ic.doc.automed.wrappers.BibTeXWrapperFactory
 -  
 - attribute - 
Variable in class uk.ac.ic.doc.automed.wrappers.XMLSchemaWrapperFactory
 -  
 - Attribute - Class in uk.ac.ic.doc.automed.wrappers.xsdomobject
 -  
 - Attribute(String, String, boolean) - 
Constructor for class uk.ac.ic.doc.automed.wrappers.xsdomobject.Attribute
 - Creates a new instance of Attribute
 - attribute - 
Variable in class uk.ac.ic.doc.automed.wrappers.xsdomobject.AutoMedToXSDOM
 -  
 - attribute - 
Variable in class uk.ac.ic.doc.automed.xmlschema.JTreeTransform
 -  
 - attribute - 
Variable in class uk.ac.ic.doc.automed.xmlschema.output.XMLOutputter
 -  
 - attribute2Element(Schema, XMLDSSGraph, String, String, String, int, int) - 
Method in class uk.ac.bbk.dcs.automed.xml.sra.old.xmldssGraph.XMLDSSRestructurer
 -  
 - attribute2Element(Schema, Element, String, int, String, Element) - 
Method in class uk.ac.bbk.dcs.automed.xml.sra.old.XMLRestructurer
 -  
 - attribute2Element(Schema, Element, String, int, String, Element) - 
Method in class uk.ac.bbk.dcs.automed.xml.sra.SRAPhase2Extended
 -  
 - attribute2ElementTransf(Schema, Element, Element, String, String, int, Map, SchemaObject, SchemaObject) - 
Method in class uk.ac.bbk.dcs.automed.xml.sra.SRAPhase2Basic
 -  
 - attribute2ElementUsingSubClassesOrSuperClass(Schema, String, String, Map, List, int, int) - 
Method in class uk.ac.bbk.dcs.automed.xml.sra.old.XMLRestructurer
 -  
 - attribute2ElementUsingSubClassesOrSuperClass(Schema, String, String, Map, List, int, int) - 
Method in class uk.ac.bbk.dcs.automed.xml.sra.SRAPhase2Extended
 -  
 - attributeColumns - 
Variable in class uk.ac.ic.doc.automed.xml.XMLWriter
 -  
 - attributeConstructName - 
Static variable in class uk.ac.ic.doc.automed.reps.Utility
 -  
 - AttributeDomain - Class in uk.ac.ic.doc.automed.reps
 - AttributeDomain.java
 Represents an attribute's domain
 - AttributeDomain(String, int, int, int) - 
Constructor for class uk.ac.ic.doc.automed.reps.AttributeDomain
 - Creates a new instance of AttributeDomain
 - AttributeDomain(String, Range, int) - 
Constructor for class uk.ac.ic.doc.automed.reps.AttributeDomain
 -  
 - attributeEdges - 
Variable in class uk.ac.ic.doc.automed.modelmanagement.modelgen.HDMToEER
 -  
 - attributeEdges - 
Variable in class uk.ac.ic.doc.automed.modelmanagement.modelgen.HDMToER
 -  
 - AttributeJaccardExistenceModule - Class in uk.ac.ic.doc.automed.matching.modules.probability.binary
 - The module that compares the schema elements by examining if they have common instances
 - AttributeJaccardExistenceModule(SchemaElementPair[]) - 
Constructor for class uk.ac.ic.doc.automed.matching.modules.probability.binary.AttributeJaccardExistenceModule
 -  
 - AttributeJaccardNameModule - Class in uk.ac.ic.doc.automed.matching.modules.probability.binary
 - The module that compares the names of the schema elements
 - AttributeJaccardNameModule(SchemaElementPair[]) - 
Constructor for class uk.ac.ic.doc.automed.matching.modules.probability.binary.AttributeJaccardNameModule
 -  
 - attributeLabels - 
Variable in class uk.ac.ic.doc.automed.editor.drawables.DrawUMLClassVertex
 -  
 - attributeNames - 
Variable in class uk.ac.ic.doc.automed.xml.XMLWriter
 -  
 - attributeNodes - 
Variable in class uk.ac.ic.doc.automed.modelmanagement.modelgen.HDMToEER
 -  
 - attributeNodes - 
Variable in class uk.ac.ic.doc.automed.modelmanagement.modelgen.HDMToER
 -  
 - AttributePrecisionModule - Class in uk.ac.ic.doc.automed.matching.modules.probability.binary
 - The module that compares the schema elements by examining the precision of their instances
 - AttributePrecisionModule(SchemaElementPair[]) - 
Constructor for class uk.ac.ic.doc.automed.matching.modules.probability.binary.AttributePrecisionModule
 -  
 - attributes - 
Variable in class uk.ac.bbk.dcs.automed.xml.sra.old.xmldssGraph.XMLDSSGraphElement
 -  
 - attributes - 
Variable in class uk.ac.ic.doc.automed.editor.drawables.DrawRDBTableVertex
 -  
 - attributes - 
Static variable in class uk.ac.ic.doc.automed.p2p.wrappers.GoogleScholarWrapperFactory
 -  
 - attributeType - 
Variable in class uk.ac.ic.doc.automed.wrappers.AutoMedResult
 -  
 - atype - 
Variable in class uk.ac.ic.doc.automed.editor.PatternWritingTool
 -  
 - authenticate() - 
Method in class uk.ac.ic.doc.automed.p2p.AuthenticationHelper
 - Authenticate an automed peer to the network
 - authenticate() - 
Method in class uk.ac.ic.doc.automed.p2p.AutoMedPeer
 - Authenticate using the authentication helper
 - authentication - 
Variable in class uk.ac.ic.doc.automed.p2p.messages.applicationlayer.HelloMsg
 -  
 - AUTHENTICATION - 
Static variable in class uk.ac.ic.doc.automed.p2p.protocol.P2PConstants
 -  
 - AuthenticationException - Exception in uk.ac.ic.doc.automed.p2p
 -  
 - AuthenticationException(String) - 
Constructor for exception uk.ac.ic.doc.automed.p2p.AuthenticationException
 - Creates a new instance of HandlerNotFoundException
 - AuthenticationException(String, Throwable) - 
Constructor for exception uk.ac.ic.doc.automed.p2p.AuthenticationException
 - Creates a new instance of HandlerNotFoundException
 - AuthenticationHelper - Class in uk.ac.ic.doc.automed.p2p
 -  
 - AuthenticationHelper(AutoMedPeer) - 
Constructor for class uk.ac.ic.doc.automed.p2p.AuthenticationHelper
 - Creates a new instance of AuthenticationHelper
 - AuthenticationTuple - Class in uk.ac.ic.doc.automed.p2p.messages.applicationlayer
 - AuthenticationTuple.java
 Represents authentication tuple - AuthenticationTuple(String, String, String) - 
Constructor for class uk.ac.ic.doc.automed.p2p.messages.applicationlayer.AuthenticationTuple
 - Creates a new instance of AuthenticationTuple
 - authHelper - 
Variable in class uk.ac.ic.doc.automed.p2p.AutoMedPeer
 -  
 - authors - 
Variable in class uk.ac.ic.doc.automed.p2p.wrappers.GoogleScholarWrapper.GSPubRec
 -  
 - AUTO_COUNT - 
Static variable in class uk.ac.ic.doc.automed.p2p.gui.graph.GShape
 -  
 - autoCommit - 
Static variable in class uk.ac.ic.doc.automed.p2p.directory.P2PDirectoryRepository
 -  
 - autoCommit - 
Variable in class uk.ac.ic.doc.automed.util.db.DBAccess
 -  
 - AutoLayout - Class in uk.ac.ic.doc.automed.editor.autolayout
 -  
 - AutoLayout(AutoLayoutSchemaObject) - 
Constructor for class uk.ac.ic.doc.automed.editor.autolayout.AutoLayout
 - Creates a new instance of AutoLayout
 - AutoLayoutERObj - 
Static variable in class uk.ac.ic.doc.automed.editor.autolayout.NewObjectsClass
 -  
 - AutoLayoutERObject - Class in uk.ac.ic.doc.automed.editor.autolayout
 -  
 - AutoLayoutERObject(Positionable) - 
Constructor for class uk.ac.ic.doc.automed.editor.autolayout.AutoLayoutERObject
 -  
 - AutoLayoutPositionable - Class in uk.ac.ic.doc.automed.editor.autolayout
 - Base class for ale others AutoLayout* classes.
 - AutoLayoutPositionable(Positionable) - 
Constructor for class uk.ac.ic.doc.automed.editor.autolayout.AutoLayoutPositionable
 - Creates a new instance of AutoLayoutPositionable
 - AutoLayoutPositionable - 
Static variable in class uk.ac.ic.doc.automed.editor.autolayout.NewObjectsClass
 -  
 - autoLayoutPositionablesTable - 
Static variable in class uk.ac.ic.doc.automed.editor.autolayout.AutoLayoutPositionable
 - HashMap which map SchemaObjects to AutoLayput* objects.
 - AutoLayoutSchemaObject - Class in uk.ac.ic.doc.automed.editor.autolayout
 -  
 - AutoLayoutSchemaObject(Positionable) - 
Constructor for class uk.ac.ic.doc.automed.editor.autolayout.AutoLayoutSchemaObject
 - Creates a new instance of AutoLayoutPositionableect
 - AutoLayoutSchemaObject - 
Static variable in class uk.ac.ic.doc.automed.editor.autolayout.NewObjectsClass
 -  
 - AutoLayoutSpringObject - Class in uk.ac.ic.doc.automed.editor.autolayout
 - Class to implement Kamada and Kawai's spring algorithm described in
 Information Processing Letters Volume 31, Issue 1, Pages 1-56.
 - AutoLayoutSpringObject(Positionable) - 
Constructor for class uk.ac.ic.doc.automed.editor.autolayout.AutoLayoutSpringObject
 - Creates a new instance of AutoLayoutSpringObject
 - AutoLayoutSpringObject - 
Static variable in class uk.ac.ic.doc.automed.editor.autolayout.NewObjectsClass
 -  
 - AutoLayoutTreeObject - Class in uk.ac.ic.doc.automed.editor.autolayout
 - Class to implement tree autolayout algorithm.
 - AutoLayoutTreeObject(Positionable) - 
Constructor for class uk.ac.ic.doc.automed.editor.autolayout.AutoLayoutTreeObject
 -  
 - AutoLayoutTreeObject(Positionable, AutoLayoutTreeObject, AutoLayoutTreeObject, AutoLayoutTreeObject) - 
Constructor for class uk.ac.ic.doc.automed.editor.autolayout.AutoLayoutTreeObject
 - Creates a new instance of AutoLayoutTreeObjectect
 - AutoLayoutTreeObject - 
Static variable in class uk.ac.ic.doc.automed.editor.autolayout.NewObjectsClass
 -  
 - autoMatch(Schema) - 
Method in class uk.ac.ic.doc.automed.modelmanagement.matchmodel.MatchModel
 -  
 - automed - 
Variable in class uk.ac.bbk.dcs.automed.modelmanagement.BBKSQLModelDef
 -  
 - automed - 
Variable in class uk.ac.ic.doc.automed.modelmanagement.modeldef.SQLModelDef
 -  
 - automed - 
Variable in class uk.ac.ic.doc.automed.wrappers.SQLWrapperFactory
 -  
 - automed_background_colour - 
Static variable in class uk.ac.bbk.dcs.automed.modelmanagement.BBKSQLModelDef
 -  
 - automed_background_colour - 
Static variable in class uk.ac.ic.doc.automed.modelmanagement.modeldef.SQLModelDef
 -  
 - automed_column - 
Variable in class uk.ac.bbk.dcs.automed.modelmanagement.BBKSQLModelDef
 -  
 - automed_column - 
Variable in class uk.ac.bbk.dcs.automed.wrappers.BBKSQLWrapperFactory
 -  
 - automed_column - 
Variable in class uk.ac.ic.doc.automed.modelmanagement.modeldef.SQLModelDef
 -  
 - automed_column - 
Variable in class uk.ac.ic.doc.automed.wrappers.SQLWrapperFactory
 -  
 - automed_constraint_colour - 
Variable in class uk.ac.bbk.dcs.automed.modelmanagement.BBKSQLModelDef
 -  
 - automed_constraint_colour - 
Variable in class uk.ac.ic.doc.automed.modelmanagement.modeldef.SQLModelDef
 -  
 - AUTOMED_DIR - 
Static variable in class uk.ac.ic.doc.automed.util.db.DBToolKit
 - .automed directory
 - automed_foreign_key - 
Variable in class uk.ac.bbk.dcs.automed.modelmanagement.BBKSQLModelDef
 -  
 - automed_foreign_key - 
Variable in class uk.ac.bbk.dcs.automed.wrappers.BBKSQLWrapperFactory
 -  
 - automed_foreign_key - 
Variable in class uk.ac.ic.doc.automed.modelmanagement.modeldef.SQLModelDef
 -  
 - automed_foreign_key - 
Variable in class uk.ac.ic.doc.automed.wrappers.SQLWrapperFactory
 -  
 - automed_index - 
Variable in class uk.ac.bbk.dcs.automed.modelmanagement.BBKSQLModelDef
 -  
 - automed_index - 
Variable in class uk.ac.bbk.dcs.automed.wrappers.BBKSQLWrapperFactory
 -  
 - automed_index - 
Variable in class uk.ac.ic.doc.automed.modelmanagement.modeldef.SQLModelDef
 -  
 - automed_index - 
Variable in class uk.ac.ic.doc.automed.wrappers.SQLWrapperFactory
 -  
 - automed_notnull_constraint - 
Variable in class uk.ac.bbk.dcs.automed.modelmanagement.BBKSQLModelDef
 -  
 - automed_notnull_constraint - 
Variable in class uk.ac.ic.doc.automed.modelmanagement.modeldef.SQLModelDef
 -  
 - automed_notnull_constraint - 
Variable in class uk.ac.ic.doc.automed.wrappers.SQLWrapperFactory
 -  
 - AUTOMED_OBJECTS - 
Static variable in class uk.ac.ic.doc.automed.p2p.protocol.P2PConstants
 -  
 - automed_primary_key - 
Variable in class uk.ac.bbk.dcs.automed.modelmanagement.BBKSQLModelDef
 -  
 - automed_primary_key - 
Variable in class uk.ac.bbk.dcs.automed.wrappers.BBKSQLWrapperFactory
 -  
 - automed_primary_key - 
Variable in class uk.ac.ic.doc.automed.modelmanagement.modeldef.SQLModelDef
 -  
 - automed_primary_key - 
Variable in class uk.ac.ic.doc.automed.wrappers.SQLWrapperFactory
 -  
 - AUTOMED_QUERY - 
Static variable in class uk.ac.ic.doc.automed.p2p.son.dht.messaging.Tag
 -  
 - AUTOMED_QUERY_RESULT - 
Static variable in class uk.ac.ic.doc.automed.p2p.son.dht.messaging.Tag
 -  
 - AUTOMED_SQL_MODEL_COLUMN - 
Static variable in class uk.ac.bbk.dcs.automed.modelmanagement.BBKSQLModelDef
 -  
 - AUTOMED_SQL_MODEL_COLUMN - 
Static variable in class uk.ac.ic.doc.automed.modelmanagement.modeldef.SQLModelDef
 - The name of the 
Construct used to represent columns in
 the AutoMed oriented model.
 - AUTOMED_SQL_MODEL_FOREIGN_KEY - 
Static variable in class uk.ac.bbk.dcs.automed.modelmanagement.BBKSQLModelDef
 -  
 - AUTOMED_SQL_MODEL_FOREIGN_KEY - 
Static variable in class uk.ac.ic.doc.automed.modelmanagement.modeldef.SQLModelDef
 - The name of the 
Construct used to represent foreign keys in
 the AutoMed oriented model.
 - AUTOMED_SQL_MODEL_INDEX - 
Static variable in class uk.ac.bbk.dcs.automed.modelmanagement.BBKSQLModelDef
 -  
 - AUTOMED_SQL_MODEL_INDEX - 
Static variable in class uk.ac.ic.doc.automed.modelmanagement.modeldef.SQLModelDef
 - The name of the 
Construct used to represent indexes in
 the AutoMed oriented model.
 - AUTOMED_SQL_MODEL_NOTNULL_CONSTRAINT - 
Static variable in class uk.ac.bbk.dcs.automed.modelmanagement.BBKSQLModelDef
 -  
 - AUTOMED_SQL_MODEL_NOTNULL_CONSTRAINT - 
Static variable in class uk.ac.ic.doc.automed.modelmanagement.modeldef.SQLModelDef
 - The name of the 
Construct used to represent not null constraints in
 the AutoMed oriented model.
 - AUTOMED_SQL_MODEL_PRIMARY_KEY - 
Static variable in class uk.ac.bbk.dcs.automed.modelmanagement.BBKSQLModelDef
 -  
 - AUTOMED_SQL_MODEL_PRIMARY_KEY - 
Static variable in class uk.ac.ic.doc.automed.modelmanagement.modeldef.SQLModelDef
 - The name of the 
Construct used to represent primary keys in
 the AutoMed oriented model.
 - AUTOMED_SQL_MODEL_TABLE - 
Static variable in class uk.ac.bbk.dcs.automed.modelmanagement.BBKSQLModelDef
 -  
 - AUTOMED_SQL_MODEL_TABLE - 
Static variable in class uk.ac.ic.doc.automed.modelmanagement.modeldef.SQLModelDef
 - The name of the 
Construct used to represent tables in the
 AutoMed oriented model.
 - automed_table - 
Variable in class uk.ac.bbk.dcs.automed.modelmanagement.BBKSQLModelDef
 -  
 - automed_table - 
Variable in class uk.ac.bbk.dcs.automed.wrappers.BBKSQLWrapperFactory
 -  
 - automed_table - 
Variable in class uk.ac.ic.doc.automed.modelmanagement.modeldef.SQLModelDef
 -  
 - automed_table - 
Variable in class uk.ac.ic.doc.automed.wrappers.SQLWrapperFactory
 -  
 - AUTOMED_USER_DIR - 
Static variable in class uk.ac.ic.doc.automed.p2p.AppToolKit
 -  
 - automedArea - 
Variable in class uk.ac.ic.doc.automed.editor.RepositoryTool
 -  
 - automedArea - 
Variable in class uk.ac.ic.doc.automed.editor.WrapperTool
 -  
 - AutoMedBoolean - Class in uk.ac.ic.doc.automed.wrappers
 - Provides generic representation boolean values.
 - AutoMedBoolean(boolean) - 
Constructor for class uk.ac.ic.doc.automed.wrappers.AutoMedBoolean
 - Create a new AutoMedBoolean
 - AutoMedBoolean(String) - 
Constructor for class uk.ac.ic.doc.automed.wrappers.AutoMedBoolean
 - Create a new AutoMedBoolean from a String value.
 - AutoMedBoolean() - 
Constructor for class uk.ac.ic.doc.automed.wrappers.AutoMedBoolean
 - Create a new AutoMedBoolean that is null in value.
 - automedButt - 
Variable in class uk.ac.ic.doc.automed.editor.WrapperTool
 -  
 - automedColumn - 
Variable in class uk.ac.ic.doc.automed.wrappers.SQLWrapperFactory.SQLTable
 -  
 - AutoMedDHTImpl - Class in uk.ac.ic.doc.automed.p2p.son.dht
 -  
 - AutoMedDHTImpl(DHTConfiguration, ID) - 
Constructor for class uk.ac.ic.doc.automed.p2p.son.dht.AutoMedDHTImpl
 -  
 - AutoMedDHTImpl(short, short, DHTConfiguration, ID) - 
Constructor for class uk.ac.ic.doc.automed.p2p.son.dht.AutoMedDHTImpl
 -  
 - AutoMedDHTImpl(DHTConfiguration, RoutingService) - 
Constructor for class uk.ac.ic.doc.automed.p2p.son.dht.AutoMedDHTImpl
 -  
 - AutoMedDHTImpl.PutAndIndexMessageHandler - Class in uk.ac.ic.doc.automed.p2p.son.dht
 - Extended 
PutMessageHandler to support indexing - AutoMedDHTImpl.PutAndIndexMessageHandler(RoutingService) - 
Constructor for class uk.ac.ic.doc.automed.p2p.son.dht.AutoMedDHTImpl.PutAndIndexMessageHandler
 -  
 - AutoMedDHTProvider - Class in uk.ac.ic.doc.automed.p2p.son.dht
 -  
 - AutoMedDHTProvider() - 
Constructor for class uk.ac.ic.doc.automed.p2p.son.dht.AutoMedDHTProvider
 -  
 - AutoMedException - Exception in uk.ac.ic.doc.automed
 - The class root of all AutoMed generated exceptions.
 - AutoMedException(String) - 
Constructor for exception uk.ac.ic.doc.automed.AutoMedException
 -  
 - AutoMedException() - 
Constructor for exception uk.ac.ic.doc.automed.AutoMedException
 -  
 - AutoMedException(Throwable) - 
Constructor for exception uk.ac.ic.doc.automed.AutoMedException
 -  
 - AutoMedException(String, Throwable) - 
Constructor for exception uk.ac.ic.doc.automed.AutoMedException
 -  
 - AutoMedFloat - Class in uk.ac.ic.doc.automed.wrappers
 - Provides generic representation of floating values with abritrary
 precision.
 - AutoMedFloat(String) - 
Constructor for class uk.ac.ic.doc.automed.wrappers.AutoMedFloat
 - Create a new AutoMedFloat from text, creating a null value if the
 text cannon be parsed.
 - AutoMedFloat(float, int) - 
Constructor for class uk.ac.ic.doc.automed.wrappers.AutoMedFloat
 - Create a new AutoMedFloat from a 32 bit floating point value.
 - AutoMedFloat(double, int) - 
Constructor for class uk.ac.ic.doc.automed.wrappers.AutoMedFloat
 - Create a new AutoMedFloat from a 64 bit floating point value.
 - AutoMedFloat() - 
Constructor for class uk.ac.ic.doc.automed.wrappers.AutoMedFloat
 - Create a new AutoMedFloat that is null in value
 - AutoMedInANutshell - Class in basic
 - An application to demonstrate how to create schemas in existing models
 - AutoMedInANutshell() - 
Constructor for class basic.AutoMedInANutshell
 -  
 - AutoMedInteger - Class in uk.ac.ic.doc.automed.wrappers
 - Provides generic representation of integer values with up to 64 bit
 precision.
 - AutoMedInteger(String) - 
Constructor for class uk.ac.ic.doc.automed.wrappers.AutoMedInteger
 - Create a new AutoMedInteger from text, creating a null value if the
 text cannon be parsed.
 - AutoMedInteger(int, int) - 
Constructor for class uk.ac.ic.doc.automed.wrappers.AutoMedInteger
 - Create a new AutoMedInteger from a 32 bit integer value.
 - AutoMedInteger(long, int) - 
Constructor for class uk.ac.ic.doc.automed.wrappers.AutoMedInteger
 - Create a new AutoMedInteger
 - AutoMedInteger(BigInteger) - 
Constructor for class uk.ac.ic.doc.automed.wrappers.AutoMedInteger
 - Create a new AutoMedInteger from a BigInteger.
 - AutoMedInteger() - 
Constructor for class uk.ac.ic.doc.automed.wrappers.AutoMedInteger
 - Create a new AutoMedInteger that is a null value
 - AutoMedMessagingHelper - Class in uk.ac.ic.doc.automed.p2p
 -  
 - AutoMedMessagingHelper(AutoMedPeer) - 
Constructor for class uk.ac.ic.doc.automed.p2p.AutoMedMessagingHelper
 - Creates a new instance of AutoMedMessagingHelper
 - automedModelName - 
Variable in class uk.ac.ic.doc.automed.modelmanagement.modeldef.ModelDef
 -  
 - AutoMedObject - Class in uk.ac.ic.doc.automed.p2p.tree
 -  
 - AutoMedObject(PersistentKey) - 
Constructor for class uk.ac.ic.doc.automed.p2p.tree.AutoMedObject
 -  
 - AutoMedObject(PersistentObject) - 
Constructor for class uk.ac.ic.doc.automed.p2p.tree.AutoMedObject
 -  
 - AutoMedPeer - Class in uk.ac.ic.doc.automed.p2p
 - Represent the AutoMed Repository in this Java Virtual Machine (JVM)
 as a peer on a peer-to-peer (P2P) network.
 - AutoMedPeer(String, PeerStateHandler) - 
Constructor for class uk.ac.ic.doc.automed.p2p.AutoMedPeer
 - Create the one 
AutoMedPeer that is allowed in any JVM: to
 prevent more than one being created, this is a private method, and
 you must call #newAutoMedPeer() to create the peer.
 - AutoMedPeerCommand - Class in uk.ac.ic.doc.automed.p2p.commands
 -  
 - AutoMedPeerCommand() - 
Constructor for class uk.ac.ic.doc.automed.p2p.commands.AutoMedPeerCommand
 -  
 - AutoMedQuery - Class in uk.ac.ic.doc.automed.wrappers
 - A generic representation of query expressions as trees, where each
 AutoMedQuery has an operator type, and 0 or more fields that have
 a field type
 - AutoMedQuery(AutoMedQueryToken, Object[]) - 
Constructor for class uk.ac.ic.doc.automed.wrappers.AutoMedQuery
 -  
 - AutoMedQuery(AutoMedQueryToken, Object) - 
Constructor for class uk.ac.ic.doc.automed.wrappers.AutoMedQuery
 -  
 - AutoMedQueryToken - Class in uk.ac.ic.doc.automed.wrappers
 - A generic representation of query langauge tokens
 - AutoMedQueryToken(int, int, String, int) - 
Constructor for class uk.ac.ic.doc.automed.wrappers.AutoMedQueryToken
 -  
 - autoMedRDFSchemaLocation - 
Static variable in class uk.ac.ic.doc.automed.reps.RDFOutputter
 -  
 - autoMedRDFSchemaLocation - 
Static variable in class uk.ac.ic.doc.automed.reps.RDFSOutputter
 -  
 - AutoMedResult - Class in uk.ac.ic.doc.automed.wrappers
 - Provides a representation of the data associated with a scheme 
 in an AutoMed Schema.
 - AutoMedResult(int) - 
Constructor for class uk.ac.ic.doc.automed.wrappers.AutoMedResult
 - Create a new AutoMedResult with a fixed size of 
 tuple in the resultCache
 - automedSchema - 
Variable in class uk.ac.ic.doc.automed.editor.WrapperTool
 -  
 - automedSchemaToXMLDSSFileMap - 
Static variable in class uk.ac.bbk.dcs.automed.xml.wrappers.NXDBSchemaManager
 -  
 - automedsql - 
Variable in class uk.ac.bbk.dcs.automed.wrappers.BBKSQLWrapperFactory
 -  
 - AutoMedString - Class in uk.ac.ic.doc.automed.wrappers
 - Provides generic representation of string values of abritrary
 size.
 - AutoMedString(String) - 
Constructor for class uk.ac.ic.doc.automed.wrappers.AutoMedString
 - Create a new AutoMedString
 - automedTable - 
Variable in class uk.ac.ic.doc.automed.wrappers.SQLWrapperFactory.SQLTable
 -  
 - AutoMedTime - Class in uk.ac.ic.doc.automed.wrappers
 - Provides generic representation of time values in GMT.
 - AutoMedTime(long, int) - 
Constructor for class uk.ac.ic.doc.automed.wrappers.AutoMedTime
 - Create a new AutoMedTime, measured as the number of milliseconds
 since 1st January 1970, 00:00:00 GMT
 - AutoMedTime(Date, int) - 
Constructor for class uk.ac.ic.doc.automed.wrappers.AutoMedTime
 - Create a new AutoMedTime
 - AutoMedTime() - 
Constructor for class uk.ac.ic.doc.automed.wrappers.AutoMedTime
 - Create a new AutoMedTime that is a null value
 - AutoMedToXSDOM - Class in uk.ac.ic.doc.automed.wrappers.xsdomobject
 -  
 - AutoMedToXSDOM(Schema) - 
Constructor for class uk.ac.ic.doc.automed.wrappers.xsdomobject.AutoMedToXSDOM
 - Creates a new instance of AutoMedToXSDOM
 - AutoMedTreeException - Exception in uk.ac.ic.doc.automed.p2p.tree
 -  
 - AutoMedTreeException() - 
Constructor for exception uk.ac.ic.doc.automed.p2p.tree.AutoMedTreeException
 -  
 - AutoMedTreeException(String) - 
Constructor for exception uk.ac.ic.doc.automed.p2p.tree.AutoMedTreeException
 -  
 - AutoMedTreeException(Throwable) - 
Constructor for exception uk.ac.ic.doc.automed.p2p.tree.AutoMedTreeException
 -  
 - AutoMedTreeException(String, Throwable) - 
Constructor for exception uk.ac.ic.doc.automed.p2p.tree.AutoMedTreeException
 -  
 - AutoMedTuple - Class in uk.ac.ic.doc.automed.wrappers
 - A structure to hold one tuple of data, to be used by AutoMedResult
 as the basis for storing sets, lists or bags of tuples.
 - AutoMedTuple(AutoMedResult, int, int) - 
Constructor for class uk.ac.ic.doc.automed.wrappers.AutoMedTuple
 - Create a new tuple belonging to row i and with nc attributes
 - automedType - 
Variable in class uk.ac.ic.doc.automed.reps.SchemaObject
 -  
 - AutoMedType - Class in uk.ac.ic.doc.automed.wrappers
 - Provides a base for the representation of basic types supported
 by AutoMed.
 - AutoMedType() - 
Constructor for class uk.ac.ic.doc.automed.wrappers.AutoMedType
 -  
 - AutoMedUtils - Class in utils
 -  
 - AutoMedUtils() - 
Constructor for class utils.AutoMedUtils
 -  
 - AutoMedWrapper - Class in uk.ac.ic.doc.automed.wrappers
 - An AutoMedWrapper represents an open connection to a datasource.
 - AutoMedWrapper() - 
Constructor for class uk.ac.ic.doc.automed.wrappers.AutoMedWrapper
 -  
 - AutoMedWrapper(AccessMethod, String) - 
Constructor for class uk.ac.ic.doc.automed.wrappers.AutoMedWrapper
 - Generate a new wrapper instance from information held in the repository
 about how to access a data source.
 - AutoMedWrapperFactory - Class in uk.ac.ic.doc.automed.wrappers
 - An AutoMedWrapperFactory class able to produce AutoMedWrapper
 instances, together with any data that the wrapper requires to be
 present in the repository.
 - AutoMedWrapperFactory() - 
Constructor for class uk.ac.ic.doc.automed.wrappers.AutoMedWrapperFactory
 -  
 - AutoMedXMLAttText - 
Static variable in class uk.ac.bbk.dcs.automed.qproc.translators.xquery.XQuery2IQL
 -  
 - AutoMedXMLText - 
Static variable in class uk.ac.bbk.dcs.automed.qproc.translators.xquery.XQuery2IQL
 -  
 - AutoRepException - Exception in uk.ac.ic.doc.automed.reps
 - The class of exceptions generated by
 the  
uk.ac.ic.doc.automed.reps package. - AutoRepException(String) - 
Constructor for exception uk.ac.ic.doc.automed.reps.AutoRepException
 - Creates an AutoRepException.
 - AutoRepException(String, Exception) - 
Constructor for exception uk.ac.ic.doc.automed.reps.AutoRepException
 - Creates an AutoRepException.
 - autoStart - 
Static variable in class uk.ac.ic.doc.automed.p2p.directory.P2PDirectoryRepository
 -  
 - autoTransform(Schema, ArrayList, int) - 
Method in class uk.ac.ic.doc.automed.modelmanagement.matchmodel.TransformModel
 - Transform @param schema so it that matches the
 structures in the target model.
 - aux - 
Variable in class uk.ac.ic.doc.automed.p2p.gui.ObjectBrowser
 -  
 - auxmodules - 
Variable in class uk.ac.ic.doc.automed.matching.Aggregator
 -  
 - auxPrintCompBody(Cell, boolean) - 
Method in class uk.ac.bbk.dcs.automed.qproc.iql.TextIQL
 -  
 - auxPrintCompHead(Cell, boolean) - 
Method in class uk.ac.bbk.dcs.automed.qproc.iql.TextIQL
 -  
 - available - 
Variable in class uk.ac.bbk.dcs.automed.qproc.annotate.grammars.schemes.SimpleCharStream
 -  
 - available - 
Variable in class uk.ac.bbk.dcs.automed.qproc.annotate.grammars.simpleComp.SimpleCharStream
 -  
 - available - 
Variable in class uk.ac.bbk.dcs.automed.qproc.annotate.grammars.simpleCompAppend.SimpleCharStream
 -  
 - available - 
Variable in class uk.ac.bbk.dcs.automed.qproc.annotate.grammars.simpleCompAppendMonus.SimpleCharStream
 -  
 - available - 
Variable in class uk.ac.bbk.dcs.automed.qproc.annotate.grammars.simpleCompMember.SimpleCharStream
 -  
 - available - 
Variable in class uk.ac.bbk.dcs.automed.qproc.annotate.grammars.sql.SimpleCharStream
 -  
 - available - 
Static variable in class uk.ac.bbk.dcs.automed.qproc.translators.sql.SimpleCharStream
 -  
 - available - 
Variable in class uk.ac.bbk.dcs.automed.qproc.translators.xquery.SimpleCharStream
 -  
 - aVaTextField - 
Variable in class uk.ac.bbk.dcs.automed.dataWarehousing.dltInterface
 -  
 - aVcaTextField - 
Variable in class uk.ac.bbk.dcs.automed.dataWarehousing.dltInterface
 -  
 - aVcConTextField - 
Variable in class uk.ac.bbk.dcs.automed.dataWarehousing.dltInterface
 -  
 - aVcStrTextField - 
Variable in class uk.ac.bbk.dcs.automed.dataWarehousing.dltInterface
 -  
 - Average - Class in uk.ac.bbk.dcs.automed.qproc.functions.aggregation
 -  
 - Average() - 
Constructor for class uk.ac.bbk.dcs.automed.qproc.functions.aggregation.Average
 -  
 - Averages - Class in uk.ac.ic.doc.automed.matching
 -  
 - Averages(double[]) - 
Constructor for class uk.ac.ic.doc.automed.matching.Averages
 -  
 - avgs - 
Variable in class uk.ac.ic.doc.automed.matching.SchemaElement
 -  
 - aw - 
Variable in class uk.ac.ic.doc.automed.editor.WrapperTool
 -  
 - awf - 
Variable in class uk.ac.ic.doc.automed.editor.WrapperTool
 -  
 - awf - 
Variable in class uk.ac.ic.doc.automed.wrappers.AutoMedWrapper
 -  
 - awfFeatures - 
Variable in class uk.ac.ic.doc.automed.reps.AccessMethod
 -  
  BidirectionalDegree object
 based on the specified forward and backward similarity degrees.
Hashtable storing the bidirectional degrees.
BidirectionalMap object based on the specified thresholds.
AtomicViewMap with views between a
 single source schema and a single target schema.
GAVQueryReformulationProvider that does not require the schemes in a query to be only from the
 global schema.#GAVQueryReformulationProvider(Schema, Schema[], QueryProcessorConfiguration) instead
AutoMedWrapper as being able to provide the
 implementation of an AccessMethod used to create the wrapper.
CheckExistenceModule to compare the specified schema elements in the input lists.
CheckExistenceModule to compare the specified schema elements in the input arrays.
CheckExistenceModule to compare the specified schema elements in the input lists.
CheckExistenceModule to compare the specified schema elements in the input arrays.
CheckExistenceModule to compare the specified schema elements in the input lists.
CheckExistenceModule to compare the specified schema elements in the input arrays.
CheckExistenceModule to compare the specified schema elements in the input lists.
CheckExistenceModule to compare the specified schema elements in the input arrays.
ArrayList passed exist in the Postgres database
Maps for the Transformation
 class.
SchemaElementPairRelationship object.
Schema the factory
 generates
Schema the
 factory generates
#addCommand(String, Class)
#addCommand(String, Class)
Constructs is determined by their Construct.getCID()
 value.
AutoMedType expressions
SchemaElement objects.CompositeViewMap object for the input source and
 target schemas, then populates it.
ComprehensionHeadSimplifierUndo so that the optimisation occurs only if:
 
 the comprehension argument to the map function is a single level comprehension
 the schemes of the comprehension are all of the same data model
 this data model is one of the supported models as specified in
 ComprehensionHeadSimplifierUndoPhysicalOptimiser.supportedModels
 AutoMedWrapper
Construct, which is assumed to already
 exist in the STR.
Cell objects contains a given Cell
 object
true if the specified elements are contained in the specified pairs.
true if the pairs are contained in the specified array.
Shape.
Point2D is inside the boundary of the
 Shape.
Shape entirely contains the
 specified rectangular area.
Shape entirely contains the
 specified Rectangle2D.
SchemaObject exists in this Schema
SchemaObject that has the supplied name exists in
 this Schema
true if the SchemaElement object contains the specified instance.
true if the specified relationship appears in the array of relationships
Schema.contains(uk.ac.ic.doc.automed.reps.SchemaObject) instead
Transformation objects that represent each transformation step
 from one schema to the next included in path
Model used to represent the
 Schema of the datasource.
Schema object
Model object.
Schema object
Schema object
Schema object
Schema object
TargetConstructs in the @param targetModel.
AutoMedPeer to listen to other peers' requestsAutoMedPeer to listen to other
 peers' requestsPositionable in the GUI.
Positionable (e.g.
instread
 Generate a name of a schema that "appears" to be following the name used
 for this Schema, and which has not already been used as a Schema name
AbstractMessage This method is used by the receiving peer to decode
 the message
AbstractMessage
 This method is used by the receiving peer to decode the message
AbstractMessage
 This method is used by the receiving peer to decode the message
Cell from two variables and a
 binary scheme.#createIdentTransformations() instead.
Schema.nextSchemaName.
 
 Creates a name for an intentional schema based on a given schema.
Model used to represent the
 Schema of the datasource.
ModelObjectBuilder.createModel(AutoMedObject objectNode, overwrite)
             instead
HDMObject.List object.
PathwayAbstraction object from tree
vars, and the RHS of the generator is an ASG query.
vars, and given the generator.
Schema object.
AutoMedWrapperFactory.populateSchema(AutoMedWrapper) instead
SchemaObject whose record already exists in
 the STR.
IQLUtility.createSingleGenQuery(String head, String genVars, String genScheme, List predicates)
 but takes Cell objects instead of string.
Schema the factory generates
Schema the
 factory generates
Schema the factory generates
Schema the
 factory generates
DSRDSRException.DataTypeModule to compare the specified schema elements in the input lists.
DataTypeModule to compare the specified schema elements in the input arrays.
DegreeCombinator for the specified aggregated pairs of elements.
Schema the
 factory generates
SchemaObject array containing the difference by name
 between this schema (s1) and the schema passed as a parameter (s2).
differenceByName instead
SchemaElement objects.#addCommand(String, Class).
AutoMedPeer.
Constants for a list of 
 OPT_* request typesPeerDescription object and finds
 the destination port of this peer
PeerDescription object and finds
 the destination port of this peer
PeerDescription object and finds
 the destination port of this peer
doSimpleAnonymousRequest except
 that it does not expect a return message.
FileFilter that selects only files with certain
 'dot' extentions.
Network in 
 an AutoMed EditorPanel.Schema in 
 an AutoMed EditorPanel.Script
 
 Return the created shape
Script
 
 Return the created shape
Transformation in 
 an AutoMed EditorPanel.DrawableVertex that the
 editor will use to draw any vertex it does not know (or has been
 told) to draw otherwise.Connection for a data souce.DSR.Span) can be a node or an edge and edges can 
 be named (optionally).Span structure - split this
 out into type and and value and return the result.
JPanel extension to display arcs and vertices using
 implementations of DrawableArc and DrawableVertex.JPanel containing an AutoMed Schema.
JPanel containing an AutoMed Network.
ElementNameModule to compare the specified schema elements in the input lists.
ElementNameModule to compare the specified schema elements in the input arrays.
ElementNameModule to compare the specified schema elements in the input lists.
ElementNameModule to compare the specified schema elements in the input arrays.
ElementNameModule to compare the specified schema elements in the input lists.
ElementNameModule to compare the specified schema elements in the input arrays.
ElementNameModule to compare the specified schema elements in the input lists.
ElementNameModule to compare the specified schema elements in the input arrays.
elements
TupleInput entry.
EOF Symbol index.
EOF Symbol index.
true if this degree is equal to the specified degree.
SchemaElement objects.error Symbol index.
error Symbol index.
QueryProcessor
 class.
Evaluator.Evaluator(QueryProcessorConfiguration) instead
ASG query and passes it to a LowLevelWrapperHdm 
 for processing.
Vector
Vector
true if the specified element appears in one of the pairs of the array.
true if a schema object with the specified name exists in the array.
Schema produced by extending the two schemas with schema objects
 which are missing from each other.
Filter.
Filter.
ow.dht.advanced.EntryFilter
PathwayAbstraction objects instead
SchemaElementPairRelationship array for the specified schema objects.
Schema.getAttachedSchemas(int) instead. Returns an array
             of Schema's that are connected to this schema by some
             transformation pathway and are data sources (including this
             schema itself if it is a data source). For each schema s
             returned, s.isDataSource() is true.
Schema.getAttachedSchemas(int) instead. Returns an array
             of Schema's that are connected to this schema by some
             transformation pathway and have extensional data (including
             this schema itself if it has extensional data). For each schema
             s returned, s.isExtDB() is true.
Schema.getAttachedSchemas(int) instead. Returns an array
             of Schema's that are connected to this schema by some
             transformation pathway and are extensional schemas (including
             this schema itself if it is an extensional schema). For each
             schema s returned, s.isExtSchema() is true.
SchemaElementPair arrays with all the combinations of related schema elements.
SchemaObject that are referenced in the
 object's scheme that have no Construct .
ModelChangeEvents that 
 a change has occured to the set of Models in the repository
SchemaChangeEvents that a change has
 occured to the set of Schemas in the repository
Object array representation of a schema object's
 scheme into a String representation.
Schema the factory generates
Schema the
 factory generates
frame
Schema the
 factory generates
Schema at the given index of the pathway.
Construct.getPosition() since Construct
  instances are not placed relative to other Positionables.
Model.getPosition() since Model instances
 are not placed relative to other Positionables.
Network.getPosition() since Network instances
 are not placed relative to other Positionables.
Schema.getPosition() since Schema instances are
 not placed relative to other Positionables.
AccessMethod held with the given identifier in in the
 STR.
AccessMethod associated with this wrapper, which holds
 the details of the datasource being wrapped.
AccessMethods that may be used to access the physical
 database system that holds this Schema.
Transformation.getReferencedSchemaObjects() and
 Transformation.getReferencedSchemaObjectsInQuery().
Object array of schemes of all the schema objects
 that belong to the schema.
Object array of all objects' schemes of a schema.
String) of the
 schemes of all the schema objects that belong to the schema.
String) of all
 objects' schemes of a schema.
TypeHierarchy objects.
Construct type of the
 ConstructScheme.
Models necessary to re-build the
 Schemas in SchemaElementPairRelationship arrays for the specified schema objects.
Model used to represent the Schema for the SQL datasource wrapper.
Model used to represent the
 Schema of the datasource.
P2PDHTWrapperFactory.getModel() for the P2PWrapperFactory.
P2PWrapperFactory.getModel() for the P2PWrapperFactory.
Model used to represent the
 Schema of the datasource.
Model used to represent the
 Schema for the SQL datasource wrapper.
Model, which is the same as
 the source oriented Model for the semistructured datasource
Model that will be used to
 represent an AutoMed oriented view of the data source.
AutoMedPeer that represents the repository
 in the JVM on the P2P network.
AutoMedPeer this application provides a UI for.
AutoMedType type of the schema object (ie the
 data type any instances associated with this schema object will
 belong to).
AutoMedWrapperFactory
SchemaObjects of this Construct.
SchemaObjects of this Model.
Hashtable of the bidirectional degrees.
SimilarSchemaElementPair objects which define the bidirectional degrees between the pairs of schema elements.
SimilarSchemaElementPair object which defines the bidirectional degrees
 for the specified SchemaElementPair
EditorPanel 
 where this Drawable vertex is to be painted.
Drawable
Drawable
Rectangle that completely encloses the
 Shape.
Shape than the getBounds method.
PeerCache that this AutoMedPeer keeps, containing
 data fetched form the P2PDirectory of other peers and public
 schemas.
AbstractCellEditor adapter class
AbstractCellEditor adapter class
AbstractCellEditor adapter class
Drawable visually appears
 to a viewer.
Drawable visually appears
 to a viewer.
Drawable visually appears
 to a viewer.
Drawable visually appears
 to a viewer.
Drawable
Drawable
SimilarSchemaElementPair objects that define compatible pairs.
QueryProcessorConfiguration of query being
 run incrementally.
Point where a DrawableArc connecting
 to this DrawableVertex should be drawn to, no
DrawVertex.getConnectionPoint(java.awt.Point)
 for use on rectangular Drawables
 that allows the centre of the object you are connecting with to be 
 treated as only loosely defining where the connection point should be
 aligned to, such that as the other point moves to the right, so 
 the centre of the drawable moves a little to the right
ConstructConstraint objects associated to this construct
Construct.
SCHEME_TYPE_CONSTRUCT
Construct identified by the given construct
 identifier (CID).
Construct type of the schema object (ie which
 modelling language construct this schema object is an instance of).
Construct objects associated to a Model
 object for generating XML structure.
HashMap
QueryPlannerResult.CoverageSet class, which has the
 following fields:
 
  k-edge(Edge) of the k-query to which the set
 belongs
  coverageSetName which is a string delimited by
  '|' each element of which is a string of the form
 schema:peer.HashMap of column->value.DataSource object representing the data source
 represented by this schema
DBAccess instance for a data source.dsName.dsName.STR.setDebugLevel(int)
 deprecated: use #Debugger.getDebugLevel() instead
Debugger.setDebugLevel(int)
AutoMedWrapperFactory that is used to generate
 Schema instances from information in a data sources
AutoMedWrapperFactory that is used to generate
 Schema instances from information in a data sources
QueryCacheWrapperFactory associated
 to this wrapper
SchemaObjects of a particular Construct in this
 Schema which have a reference to the given SchemaObject in
 their scheme.
SchemaObjects of a particular Construct in
 this Schema which have a reference to the given
 SchemaObject in their scheme.
SchemaObjects which have a reference to this
 SchemaObject in their scheme.
SchemaObjects of a particular Construct which
 have a reference to this SchemaObject in their scheme.
DIGError object
 associated with this exception.
#getDirectoryObjects(context, content, type) above for schema
 profile.
P2PDirectoryRepository instance that
 is responsibleDrawable that has been used to represent a
 Positionable in this panel.
Drawable that has been used to represent a
 Positionable.
LinkedList of Span 
 elements, each Span representing an instance of an edge.
Schema to which the SchemaObject belongs.
Schema that represents in the datasource in terms of
 SchemaObjects in a data source oriented manner.
SchemaObject wrapped by this SchemaElement object.
SchemaObject that has the supplied name in this schema.
SchemaObject reference that has the given schema
 object identifier (OBID).
SchemaObject that this Scheme element
 is contained within, i.e.
SchemaObject of the transformation.
SchemaObject of the transformation associated
 with the end attached to a particular Schema
SchemaObject that has the supplied name in
             this schema. Note that the String supplied must match exactly
             the name of the SchemaObject as returned by SchemaObject.getSchemeNamesString()
SchemaObject.getSchemaObject(int) instead
SchemaObjects that are instances of a
 particular Construct.
SchemaObject) that
 belong to the schema.
Schemas in this network.
Schemas that appear in the
 Transformations of this
 Pathway.
Schema instances held in the repository.
Schema instances that belong to a modelling language.
ConstructScheme objects
 representing the scheme of the construct.
Schema.createSchemaObject, Schema.applyAddTransformation
 and Transformation.createAddTransformation require that an Object
 array be supplied that defines the scheme of the new SchemaObject.
#getSchemeNames(false)
#Schema.getSchemaNameString(false)
SchemaObject using brackets
 as set by Schema.setOpenCloseSchemeBracket.
SchemaObject using the supplied array of Objects.
Scheme in the definition of
 the SchemaObject it defines.
index
index
ConstructScheme.
Properties for a Script shapeSchemaElement object of the pair.
QEP protocol instance
SMRController
LinkedList with each element of type
 Span representing a span in that edge.
SemanticRelationship object.
Collection that holds the supported
 ask elements.
Collection that holds the supported
 langauge elements.
Collection that holds the supported
 tell elements.
TableCellEditor interface.TableCellEditor interface.TableCellEditor interface.SchemaObjects of this Construct.
SchemaObjects of this Model.
SchemaObject output of the transformation.
Schema of the transformation.
Transformations that make up this
 Pathway.
Transformation that go out from a particular
 schema.
Transformations that involve this SchemaObject.
Transformation's that have this schema
 as the fromSchema field in the transformation table of the
 STR.
Transformation's that have this schema
 as the toSchema field in the transformation table of the
 STR.
TransformModel field for this schema
TypeHierarchy.TypeObject object from this hierarchy
TypeHierarchy.TypeObject object from this hierarchy by tid
Model this hierarchy is attached to
TypeHierarchy objects associated to this modelTypeHierarchy objects for a specific Model.
ConstructScheme.
Map of query functions which are linked to variables (
 (String) var --> (Cell) function)
Positionable interface
TreeNode.getXMLDocument() but returns the XML string of the document
Script parameter which is responsible for the display of this node.
GShape parameter which is responsible for the display of this node.Script parameter which is responsible for the display of this node.
Theadable interface.
Theadable interface.
Theadable interface.
JobHandler interface.JobHandler interface.JobHandler interface.AbstractRequestListener.handleRequest(byte[] dataReceived, ResponseHandler outputHandler)
             instead
AbstractRequestListener.handleRequest(byte[] dataReceived, ResponseHandler outputHandler)
             instead
AbstractRequestListener.handleRequest(byte[] dataReceived, ResponseHandler outputHandler)
             instead
RequestListener.handleRequest(byte[] dataReceived, ResponseHandler outputHandler)
             instead
RequestListener.handleRequest(byte[] dataReceived, ResponseHandler outputHandler)
             instead
AbstractRequestListener method to handler TCP responseAbstractRequestListener.handleRequest(byte[] dataReceived, ResponseHandler outputHandler)
             instead
AbstractRequestListener.handleRequest(byte[] dataReceived, ResponseHandler outputHandler)
             instead
AbstractRequestListener.handleRequest(byte[] dataReceived, ResponseHandler outputHandler)
             instead
RequestListener.handleRequest(byte[] dataReceived, ResponseHandler outputHandler)
             instead
RequestListener.handleRequest(byte[] dataReceived, ResponseHandler outputHandler)
             instead
RequestListener.handleRequest(byte[] dataReceived, ResponseHandler outputHandler)
             instead
SchemaElement object.
ASGResult.hasNext().
DataSourceRepository.SchemaObject of a certain
 Construct type in any window.
#hideConstruct().
SchemaObject of a certain
 Model type in any window.
#hideModel().
Positionable
#hidePositionable(), calling that
 method for each Positionable passed.
SchemaElement objects.Schema the factory generates
Schema the
 factory generates
Schema within the pathway.
MutltiCastSocket
JobHandler queue to handle
 messages received by this socket.
P2PDirectoryP2PDirectory instanceP2PDirectory instanceUtility.initRepository() to initialise a particulare data source
Model object.
ModelObjectBuilder.createModel(AutoMedObject objectNode, overwrite)
             instead
QueueWorker taking this instance as a job handler.
P2PRegistryAutoMedPeer repository based on the default configuration fileDSRConfiguration in a previous step.
Schema object
SchemaObjects that are mapped to  
 by 
Instance object.
Incompatibility class
Disjointncess class
Equivalence class
Incompatibility class
Overlapness class
SchemaObject array containing the intersection by name
 between this schema (s1) and the schema passed as a parameter (s2).
Point where a line intersects a Polygon
Shape intersects the interior
 of a specified rectangular area.
Shape intersects the interior
 of a specified Rectangle2D.
true if the schema element is "atomic", false otherwise.
Schema.getType() instead. Determines whether or not the
             schema represents an external data source.
Schema.getType() instead. Determines whether or not the
             schema represents an extentional database.
Schema.getType() instead. Determines whether or not the
             schema is an extentional schema.
SchemaObject belonds to a data source or is just
 created in a transformation.
Positionable is hidden at present, and
 hence should not be displayed by the GUI
Drawable is hidden, meaning that either
 the Positionable on which it is based is hidden, or one of the
 Positionables it depends on is hidden
ConstructScheme is part the
 key of the whole scheme.
Scheme is part of the set of Schemes
 that uniquely identify the parent SchemaObject in a particular
 Schema
evaluateAction()
true if one of the similarity degrees is not a number.
SchemaElementPair array with pairs defined by the specified schema object and the schema object array.
Scheme defines a String, rather
 than a reference to some other SchemaObject
true if this object's relationship is stronger that the specified object's relationship.
evaluateAction().
Construct used to represent SQL tables.
SchemaObject.getOBID()
 SchemaObject}, and the Construct as returned by
 SchemaObject.getConstruct().
SchemaObject prefixing the scheme of each object.
SchemeInfo objects instead of scheme strings
HdmStore 
 and returns the results in the HDM specifc format of a Linked List
 of EdgeElements each representing a tuple.HdmStore to be used
Constants.PACKET_SIZE and small data datagrams
 (used to fine-tune datagram fragmentation)
MDR.Hashtable with the merged bidirectional degrees defined in the arguments.
Model object, assuming that it 
 exists in the repository already
Model class.Model class.Model instances.NaiveBayesModule to compare the specified schema elements in the input arrays.
Compatibility semantic relationship
Disjointness semantic relationship
Equivalence semantic relationship
Incompatibility semantic relationship
Overlapcess semantic relationship
Subset class
Superset class
Network and NodeAutoMedPeer if one does not already exist.
Schema that represents in the datasource in terms of
 SchemaObjects in an AutoMed oriented manner.
Schema containing SchemaObjects that
 represent a database, in such a form that queries on that schema can be
 mapped by executeQuery in the query lanuage of the database.
Schema containing SchemaObjects
 that represent a database, in such a form that queries on that
 schema can be mapped by executeQuery in the query lanuage of the database.
QueryCacheWrapper
Map of the record values.
Span data structure check if it exists in the
 HDM store
PeerEvents
SchemaEvents
#notifySuccess() to accept data content to
 send back
Schema the factory generates
Schema the
 factory generates
NumberInstancesModule to compare the specified schema elements in the input lists.
NumberInstancesModule to compare the specified schema elements in the input arrays.
NumberInstancesModule to compare the specified schema elements in the input lists.
NumberInstancesModule to compare the specified schema elements in the input arrays.
NumberInstancesModule to compare the specified schema elements in the input lists.
NumberInstancesModule to compare the specified schema elements in the input arrays.
Edge is it OK to add the edge e.g.
Schema the
 factory generates
createBinSequence(int string[], int position, int positions, int length, List seql)
 method
#outputConfirm() to output a confirmation
 message with optional content data
#outputSourcePathways(AbstractMessage request, OutputStream output)
              QEP protocol to execute the query
QEP protocol
Util.outputUnsuccessfulMessage(AbstractMessage request, String message,
             String performative, ResponseHandler output) instead
true if the following is true: forward+backward-c>=0
SchemaElement objects.#Evaluator(QueryProcessorConfiguration) instead
DrawVertex with one
 that draws a rectangle rather that a oval.
paintSymbol for a vertex, an elipse
 with a black forground and white background
paintText for a vertex puts the
 text in the middle of the symbol
HDMObject.List object.
#Pathway which encapsulates only an abstraction of 
 the transformation pathway from one schema to another.PeerStateListener
PeerStateListener
Schema the
 factory generates
exps encountered within the input query
Span which represents either a node or an edge, in terms of its type & value 
 populate the fields in the span structure that identify the rows in the database used to 
 store this span.
exps and pointers
Span represents an edge - get the edge details from the database and
 update the span.
XMLRestructurer.sourceCIDNodeMap and XMLRestructurer.targetCIDNodeMap
Span represents a node - get the node details from the database and
 update the span.
Schema
 object SchemaGetter to do the task.
Gui and EditorPanel
 will use for any repository object that it is expected to render
 by a DrawVertex implementation.PrecisionModule to compare the specified schema elements in the input lists.
PrecisionModule to compare the specified schema elements in the input arrays.
Construct type Nodal.
SchemaObject is a Nodal object, where
 the SchemaObject has had a prefix applied to the node name,
Schema the factory generates
Schema the
 factory generates
Transformation.PROPERTY_IQL_FUNCTION
P2PConstants.DIRECTORY_SERVER_CFG_FILE instead
EdgeElement's
QueryAnnotationProvider classes.PersistentHandler and DBEmbeddedDefaultQueryCache.AutoMedWrapper
QueryCacheWrapper instances.QueryEvaluationProvider classes.QueryEvaluationProvider
 classes.QueryJoinAnnotationProvider classes.QueryOptimisationProvider classes.QueryOptimisationProvider
 classes.QueryReformulationProvider classes.Schema.read(InputStream, String), where the name of the new
 Schema created is taken from that held in the textual description read from
 the InputStream.
Schema.write()) into the repository.
RecordScroller
reduce_goto table.
reduce_goto table.
QueryProcessorConfiguration which contains variables
 for the optimisationNetwork.
SchemaObject form the repository.
Transformation from the repository.
AccessMethods recorded for this schema.
SchemaElementPair array.
ModelsListener such that it will no longer 
 be notified of any adding
 or deleting of models that may occur.
SchemaObject array by removing the specified object from the input array.
SchemaObject list is emptied.
SchemasListener such that it will no longer be notified of any
 adding or deleting of schemas that may occur.
substring in string s with \
 followed by substring.
SICP.requestAbstractPathwayToSource(String schemaName) by a peer
ResultSet objects during incremental evaluation of query
SchemaObjects left in the schema, and any
 Transformations that link to this schema.
LinkedList of EdgeElement.
SchemaObject of a certain Construct type that
 have been previously hidden.
SchemaObject of a certain Model type that have
 been previously hidden.
Positionable that has been previously hidden.
Theadable interface
 This method acts as the background process at the server to update peerTheadable interface
 This method acts as the background process at the server to update peerTheadable interface
 This method acts as the background process at the server to update peerSchemaObject.
SchemaObjects.Schema.
Schema whose record already exists in the
 STR.
#createSchema() Just create an empty Schema object with
             name
SchemaElementPair object.
SchemaElementPairRelationship object.
SQLWrapper instances.Schema instances.SchemaObject.AtomicViewMaps
SchemaElementPair array which contains the constraint pairs.
#setPosition() since Construct
 instances are not placed relative to other Positionables.
#setPosition() since Model instances
 are not placed relative to other Positionables.
#setPosition() since Network instances
 are not placed relative to other Positionables.
#setPosition() since Schema instances are
 not placed relative to other Positionables.
Construct in any diagram containing it.
Construct in the ConstructScheme.
SchemaObjects of this Construct.
SchemaObjects of this Model.
String that is used to close a scheme name,
 such as "<<person>>" or "<<person,name>>"
 By default it is set to ">>".
- setColorProperty(Properties) - 
Method in class uk.ac.ic.doc.automed.p2p.gui.graph.GEdge
 -  
 - setColorProperty(Properties) - 
Method in class uk.ac.ic.doc.automed.p2p.gui.graph.GNode
 -  
 - setColorProperty(Color, Color, Color) - 
Method in class uk.ac.ic.doc.automed.p2p.gui.graph.GScriptedShape
 -  
 - setColorProperty(Color, Color, Color) - 
Method in class uk.ac.ic.doc.automed.p2p.gui.graph.GShape
 -  
 - setColorProperty(ColorProperty) - 
Method in class uk.ac.ic.doc.automed.p2p.gui.graph.GShape
 -  
 - setColorProperty(Properties) - 
Method in class uk.ac.ic.doc.automed.p2p.gui.graph.GShape
 -  
 - setCommandClass(Class) - 
Static method in class uk.ac.ic.doc.automed.DSR
 -  
 - setCommandHelp(String[][]) - 
Static method in class uk.ac.ic.doc.automed.DSR
 -  
 - setCompiledQuery(ASG) - 
Method in class uk.ac.bbk.dcs.automed.qproc.PreparedIQLQuery
 -  
 - setComponent(JComponent) - 
Method in class uk.ac.ic.doc.automed.p2p.gui.ComponentPopUp
 -  
 - setComponentSize(Component) - 
Method in class uk.ac.ic.doc.automed.p2p.editor.KQueryMain
 - Create a split layout for the compoents
 - setConfigFile(String) - 
Static method in class uk.ac.ic.doc.automed.p2p.AppToolKit
 -  
 - setConfigFileName(String) - 
Static method in class uk.ac.ic.doc.automed.DSR
 - Sets the name of the file used for data source defintiions, this resets any
 data cached in the MDR or STR and invalidates all objects returned by them
 prior to this call.
 - setConfiguration(PathwayFinderConfiguration) - 
Method in class uk.ac.ic.doc.automed.reps.pathway.DefaultPathwayFinder
 - Set configuration settings
 - setConfiguration(PathwayFinderConfiguration) - 
Method in interface uk.ac.ic.doc.automed.reps.pathway.PathwayFinder
 - Set configuration settings
 - setConsole(PrintStream) - 
Static method in class uk.ac.ic.doc.automed.util.Logger
 -  
 - setConsole(PrintStream) - 
Method in class uk.ac.ic.doc.automed.util.LogOutputHandler
 -  
 - setConsoleText(byte[]) - 
Method in class uk.ac.ic.doc.automed.editor.LogConsole
 -  
 - setConstraintDefinition(String, String) - 
Method in class uk.ac.ic.doc.automed.reps.Construct
 - Set the definition of a constraint used within this 
Construct.
 - setConstructClass(int, int) - 
Static method in class uk.ac.ic.doc.automed.MDR
 -  
 - setConstructClass(int) - 
Method in class uk.ac.ic.doc.automed.reps.Construct
 - Sets the class of the construct.
 - setConstructConstraint(int, String, String) - 
Static method in class uk.ac.ic.doc.automed.MDR
 -  
 - setConstructMID(int, int) - 
Static method in class uk.ac.ic.doc.automed.MDR
 - Changes the modelling language that a construct belongs to
 - setConstructName(String) - 
Method in class uk.ac.bbk.dcs.automed.qproc.iql.SchemeInfo
 -  
 - setConstructName(int, String) - 
Static method in class uk.ac.ic.doc.automed.MDR
 -  
 - setConstructProperty(int, int, String, Integer, String) - 
Static method in class uk.ac.ic.doc.automed.MDR
 -  
 - setConstructRoot(int, boolean) - 
Static method in class uk.ac.ic.doc.automed.MDR
 -  
 - setConstructs(String) - 
Static method in class basic.BankDatabaseIntegration
 -  
 - setConstructs(String) - 
Static method in class basic.UniversityDatabaseIntegration
 -  
 - setConstructSchemeArgCID(int, int, int) - 
Static method in class uk.ac.ic.doc.automed.MDR
 -  
 - setConstructSchemeHDMType(int, int, int) - 
Static method in class uk.ac.ic.doc.automed.MDR
 -  
 - setConstructSchemeKey(int, int, boolean) - 
Static method in class uk.ac.ic.doc.automed.MDR
 -  
 - setConstructSchemeLowerBound(int, int, int) - 
Static method in class uk.ac.ic.doc.automed.MDR
 -  
 - setConstructSchemeType(int, int, int) - 
Static method in class uk.ac.ic.doc.automed.MDR
 -  
 - setConstructSchemeUpperBound(int, int, int) - 
Static method in class uk.ac.ic.doc.automed.MDR
 -  
 - setConstructType(Construct) - 
Method in class uk.ac.ic.doc.automed.reps.SchemaObject
 - Sets the construct type of the schema object.
 - setConstructType(String) - 
Method in class uk.ac.ic.doc.automed.util.graph.impl.HDMObject
 -  
 - setContent(String) - 
Method in interface uk.ac.ic.doc.automed.editor.TextPopUpHelper.MouseContentHandler
 - Implements this method to process pop-up content
 - setContent(String) - 
Method in class uk.ac.ic.doc.automed.p2p.gui.GuiToolKit.TableMouseHandler
 -  
 - setCoverage(Object) - 
Method in class uk.ac.ic.doc.automed.p2p.qproc.planner.QueryPlannerResult.CoverageSet
 -  
 - setCoverageSets(Collection) - 
Method in class uk.ac.ic.doc.automed.p2p.qproc.planner.QueryPlannerResult
 -  
 - setCoveredEdge(Object) - 
Method in class uk.ac.ic.doc.automed.p2p.qproc.planner.QueryPlannerResult.CoverageSet
 -  
 - setCTType(int) - 
Method in class uk.ac.ic.doc.automed.wrappers.xsdomobject.ComplexType
 - Set whether this is a sequence, choice or all
 - setCurrentQueryMapping(QueryMapping) - 
Method in class uk.ac.ic.doc.automed.p2p.qproc.planner.QueryPlannerResult
 -  
 - setData(Object) - 
Method in class uk.ac.bbk.dcs.automed.qproc.iql.Cell
 - Sets the Cell's data
 - setData(Object[], int, int) - 
Method in class uk.ac.ic.doc.automed.editor.ComboEditor
 -  
 - setData(Object[], Object, int, int) - 
Method in class uk.ac.ic.doc.automed.editor.ComboEditor
 -  
 - setData(ASG, Map, ASG) - 
Method in class uk.ac.ic.doc.automed.p2p.gui.ASGResultTable
 - This method takes an additional argument, which is a map of the head
 variables.
 - setData(ASG, ASG) - 
Method in class uk.ac.ic.doc.automed.p2p.gui.ASGResultTable
 - Set the query and its result to be display on the result table.
 The query is used to extract the query head whilst the result set contains
 
 value tuples that are to be displayed.
 - setData(Vector, Vector) - 
Method in class uk.ac.ic.doc.automed.p2p.gui.graph.GTable
 -  
 - setData(Vector, Vector, Graphics) - 
Method in class uk.ac.ic.doc.automed.p2p.gui.graph.TableComponent
 - Remove existing headers and columns and redraw table content 
 this method is to be called only from within GraphViz package
 - setData(Collection, boolean) - 
Method in class uk.ac.ic.doc.automed.p2p.gui.RecordScroller
 -  
 - setData(Collection, boolean, int) - 
Method in class uk.ac.ic.doc.automed.p2p.gui.RecordScroller
 - Display data starting with a selected index (starts from 0)
 - setData(String[], Object[][]) - 
Method in class uk.ac.ic.doc.automed.util.cache.CacheContentDescription
 - Update the cache content description
 - setData(Object) - 
Method in class uk.ac.ic.doc.automed.util.graph.impl.Edge
 -  
 - setData(Object) - 
Method in class uk.ac.ic.doc.automed.util.graph.impl.Node
 -  
 - setDatabase(Database) - 
Method in class uk.ac.ic.doc.automed.util.persist.PersistentDB
 -  
 - setDataSource(boolean) - 
Method in class uk.ac.ic.doc.automed.reps.Schema
 - Deprecated. use {@link setType) instead. Sets whether or not the schema
             represents an external data source.
 - setDataSourceName(String) - 
Static method in class uk.ac.ic.doc.automed.MDR
 - Sets the name of the repository in the local database.
 - setDataSourceName(String) - 
Static method in class uk.ac.ic.doc.automed.SSMDR
 - Sets the name of the SemiStructured MetaData Repository in the local database.
 - setDataSourceName(String) - 
Static method in class uk.ac.ic.doc.automed.STR
 - Sets the name of the Schema Transformation Repository in the local
 database.
 - setDataToSend(String, int, byte[], boolean) - 
Method in class uk.ac.ic.doc.automed.p2p.communication.AbstractClient
 - Set the data to send (with acknowledgement specified).
 - setDatatype(String, String) - 
Method in class uk.ac.bbk.dcs.automed.hdmstore.HdmStore
 - The meta data for an HDM store is contained in the associated AutoMed schema except for the 
 data type of the nodes in the schema which are set with this method (initially they default 
 to String)
 - setDataType(int) - 
Method in class uk.ac.ic.doc.automed.matching.SchemaElement
 - Sets the data type of the schema element.
 - setDataType(String) - 
Method in class uk.ac.ic.doc.automed.util.graph.impl.DNode
 -  
 - setDataValue() - 
Method in class uk.ac.bbk.dcs.automed.qproc.iql.Cell
 - Set cell's actual 'value' from tag
 - setDataYattaNodePandC(YattaWrapper.YattaNode, YattaWrapper.YattaNode) - 
Method in class uk.ac.ic.doc.automed.wrappers.YattaWrapper
 -  
 - setDateTime(Calendar) - 
Method in class uk.ac.bbk.dcs.automed.qproc.iql.Cell
 -  
 - setDateYear(int) - 
Method in class uk.ac.ic.doc.automed.p2p.wrappers.GoogleScholarWrapper.GSPubRec
 -  
 - setDBDriver(String) - 
Method in class uk.ac.ic.doc.automed.reps.AccessMethod
 - Sets the database driver used for connecting to the database.
 - setDebug(boolean) - 
Method in class uk.ac.bbk.dcs.automed.xml.sra.old.xmldssGraph.XMLDSSRestructurer
 -  
 - setDebug(boolean) - 
Method in class uk.ac.ic.doc.automed.xml.XMLReader
 -  
 - setDebugLevel(int) - 
Static method in class uk.ac.ic.doc.automed.editor.XMLSchemaEditor
 - Set the debug level for this class.
 - setDebugLevel(int) - 
Static method in class uk.ac.ic.doc.automed.STR
 - Control the printing of debug information printed on the command line
 - setDebugLevel(int) - 
Static method in class uk.ac.ic.doc.automed.util.Debugger
 - Control the printing of debug information printed on the command
 line
 - setDebugLevel(int) - 
Static method in class uk.ac.ic.doc.automed.wrappers.AutoMedWrapper
 - Set the debug level for all AutoMed wrappers.
 - setDebugStream(PrintStream) - 
Method in class uk.ac.bbk.dcs.automed.qproc.annotate.grammars.schemes.SchemesTokenManager
 -  
 - setDebugStream(PrintStream) - 
Method in class uk.ac.bbk.dcs.automed.qproc.annotate.grammars.simpleComp.SimpleCompTokenManager
 -  
 - setDebugStream(PrintStream) - 
Method in class uk.ac.bbk.dcs.automed.qproc.annotate.grammars.simpleCompAppend.SimpleCompAppendTokenManager
 -  
 - setDebugStream(PrintStream) - 
Method in class uk.ac.bbk.dcs.automed.qproc.annotate.grammars.simpleCompAppendMonus.SimpleCompAppendMonusTokenManager
 -  
 - setDebugStream(PrintStream) - 
Method in class uk.ac.bbk.dcs.automed.qproc.annotate.grammars.simpleCompMember.SimpleCompMemberTokenManager
 -  
 - setDebugStream(PrintStream) - 
Method in class uk.ac.bbk.dcs.automed.qproc.annotate.grammars.sql.IQLForSQLQueryParserTokenManager
 -  
 - setDebugStream(PrintStream) - 
Static method in class uk.ac.bbk.dcs.automed.qproc.translators.sql.SQL2IQLTokenManager
 -  
 - setDebugStream(PrintStream) - 
Method in class uk.ac.bbk.dcs.automed.qproc.translators.xquery.XQuery2IQLTokenManager
 -  
 - setDeepQuery(boolean) - 
Method in class uk.ac.bbk.dcs.automed.xml.wrappers.NXDBWrapper
 -  
 - setDefaultConfigFileName(String) - 
Static method in class uk.ac.ic.doc.automed.DSRConfiguration
 - Set the default configuration file name.
 - setDefaultConfigFileName(String[]) - 
Static method in class uk.ac.ic.doc.automed.DSRConfiguration
 - From command-line arguments, identify the -c flag which sets the
 configuration file name (if any)
 - setDefaultDataSource(String) - 
Static method in class uk.ac.ic.doc.automed.DSR
 -  
 - setDefaultEncoding(String) - 
Static method in class uk.ac.ic.doc.automed.xml.XMLWriter
 -  
 - setDefaultTab() - 
Method in class uk.ac.ic.doc.automed.p2p.editor.KQueryMain
 - Show the default display tab
 - setDefaultUserName(String) - 
Static method in class uk.ac.ic.doc.automed.DSR
 -  
 - setDescription(String) - 
Method in class uk.ac.ic.doc.automed.wrappers.XMLFileFilter
 - Sets the human readable description of this filter.
 - setDetails(Object) - 
Method in class uk.ac.ic.doc.automed.util.queue.Job
 -  
 - setDifference(Set, Set) - 
Static method in class uk.ac.ic.doc.automed.util.SetUtil
 - Returns a Set containing the result of set1 - set2.
 - setDisjointIDs(boolean) - 
Method in class uk.ac.bbk.dcs.automed.qproc.QueryProcessorConfiguration
 -  
 - setDisplayObject(Point, Component) - 
Method in class uk.ac.ic.doc.automed.p2p.gui.PopUpContext
 - Invoked by GUI components to display property of a shape
 - setDistinctInstances(String[]) - 
Method in class uk.ac.ic.doc.automed.matching.SchemaElement
 - Sets the instances of this 
SchemaElement object.
 - setDocumentLocator(Locator) - 
Method in class uk.ac.ic.doc.automed.xml.XMLReader
 -  
 - setDoFixFingers(boolean) - 
Method in class uk.ac.ic.doc.automed.p2p.routing.CresendoConfiguration
 -  
 - setDoublePosition(double, double) - 
Method in class uk.ac.ic.doc.automed.editor.autolayout.AutoLayoutSpringObject
 -  
 - setDraggedObject(Object) - 
Method in class uk.ac.ic.doc.automed.p2p.gui.graph.GClipboard
 -  
 - setDTD(String) - 
Method in class uk.ac.ic.doc.automed.xml.XMLWriter
 -  
 - setEdge2Peer(Object, Object) - 
Method in class uk.ac.ic.doc.automed.p2p.qproc.planner.QueryPlannerResult
 - Add a mapping between a k-edge and the peer that processes it
 - setEdges(Collection) - 
Method in class uk.ac.ic.doc.automed.p2p.gui.graph.GraphComponent
 -  
 - setEdgesArray(GEdge[]) - 
Method in class uk.ac.ic.doc.automed.p2p.gui.graph.GraphComponent
 -  
 - setEditable(boolean) - 
Method in class uk.ac.ic.doc.automed.editor.ComboEditor
 -  
 - setEditable(boolean) - 
Method in class uk.ac.ic.doc.automed.editor.TextPopUpHelper
 -  
 - setElement(Element) - 
Method in class uk.ac.ic.doc.automed.reasoner.DefaultDIGQueryResponse
 -  
 - setElement2AttributeSwitch(boolean) - 
Method in class uk.ac.bbk.dcs.automed.xml.sra.old.xmldssGraph.XMLDSSRestructurer
 -  
 - setElement2AttributeSwitch(boolean) - 
Method in class uk.ac.bbk.dcs.automed.xml.sra.old.XMLRestructurer
 -  
 - setElements(Network) - 
Method in class uk.ac.ic.doc.automed.editor.EditorPanel
 - The EditorPanel needs a 
Map that has as its domain instances of
 Positionable and its range instances of Drawable.
 - setElements(Schema) - 
Method in class uk.ac.ic.doc.automed.editor.EditorPanel
 - The EditorPanel needs a 
Map that has as its domain instances of
 Positionable and its range instances of Drawable.
 - setElements(Map<Object, Drawable>) - 
Method in class uk.ac.ic.doc.automed.editor.EditorPanel
 -  
 - setEnabled(boolean) - 
Method in class uk.ac.ic.doc.automed.p2p.gui.graph.GShape
 -  
 - setEnableP2P(boolean) - 
Method in class uk.ac.ic.doc.automed.editor.Gui
 -  
 - setEncoding(String) - 
Method in class uk.ac.ic.doc.automed.xml.XMLWriter
 -  
 - setEndNodes(GNode, GNode) - 
Method in class uk.ac.ic.doc.automed.p2p.gui.graph.GEdge
 -  
 - setEndTime(long) - 
Method in class uk.ac.ic.doc.automed.p2p.util.logging.ProcessNode
 -  
 - setEntryPoint(XMLDSSGraphElement) - 
Method in class uk.ac.bbk.dcs.automed.xml.sra.old.xmldssGraph.XMLDSSGraph
 -  
 - setEvaluator(String) - 
Method in class uk.ac.bbk.dcs.automed.qproc.QueryProcessorConfiguration
 -  
 - setException(String, Exception) - 
Method in class uk.ac.ic.doc.automed.editor.ReportException
 -  
 - setExistenceModule(AbstractModule) - 
Method in class uk.ac.ic.doc.automed.matching.DegreeCombinator
 - Sets the 
CheckExistenceModule of this DegreeCombinator
 - setExtDB(boolean) - 
Method in class uk.ac.ic.doc.automed.reps.Schema
 - Deprecated. use {@link setType) instead. Sets whether or not the schema
             represents an extentional database.
 - setExtensionListInDescription(boolean) - 
Method in class uk.ac.ic.doc.automed.wrappers.XMLFileFilter
 - Determines whether the extension list (.jpg, .gif, etc) should
 show up in the human readable description.
 - setExtSchema(boolean) - 
Method in class uk.ac.ic.doc.automed.reps.Schema
 - Deprecated. use {@link setType) instead. Sets whether or not the schema is
             an extentional schema.
 - setFalseRel(boolean[], SemanticRelationship) - 
Method in class uk.ac.ic.doc.automed.matching.DegreeCombinator
 -  
 - setFeatures(int) - 
Method in class uk.ac.bbk.dcs.automed.modelmanagement.BBKSQLModelDef
 - Allows certain features of the SQL92 data model to be represented in the AutoMed repository.
 - setFeatures(int) - 
Method in class uk.ac.ic.doc.automed.modelmanagement.modeldef.ModelDef
 - Allows certain features of the 
Model used for Schemas
 generated by this wrapper factory.
 - setFeatures(int[]) - 
Method in class uk.ac.ic.doc.automed.modelmanagement.modeldef.ModelDef
 - Allows certain features of the 
Model used for Schemas
 generated by this model definition to be set.
 - setFeatures(int) - 
Method in class uk.ac.ic.doc.automed.modelmanagement.modeldef.SQLModelDef
 - Allows certain features of the SQL92 data model to be  represented
 in the AutoMed repository.
 - setFetchSize(Object) - 
Method in class uk.ac.ic.doc.automed.p2p.qproc.planner.QueryPlannerResult.CoverageSet
 -  
 - setFgColor(Color) - 
Method in class uk.ac.ic.doc.automed.p2p.gui.graph.ColorProperty
 -  
 - setField(int, Object) - 
Method in class uk.ac.ic.doc.automed.wrappers.AutoMedQuery
 - Return a field in the query node.
 - setFiFingersIntervalPlayRatio(double) - 
Method in class uk.ac.ic.doc.automed.p2p.routing.CresendoConfiguration
 -  
 - setFiFingersMaxInterval(long) - 
Method in class uk.ac.ic.doc.automed.p2p.routing.CresendoConfiguration
 -  
 - setFiFingersMinInterval(long) - 
Method in class uk.ac.ic.doc.automed.p2p.routing.CresendoConfiguration
 -  
 - setFinalPosition() - 
Method in class uk.ac.ic.doc.automed.editor.autolayout.AutoLayout
 -  
 - setFinalPosition() - 
Method in class uk.ac.ic.doc.automed.editor.autolayout.AutoLayoutSchemaObject
 - Set position in Automed GUI.
 - setFinalPosition() - 
Method in class uk.ac.ic.doc.automed.editor.autolayout.AutoLayoutSpringObject
 -  
 - setFirstElement(SchemaElement) - 
Method in class uk.ac.ic.doc.automed.matching.SchemaElementPair
 -  
 - setFloat(double) - 
Method in class uk.ac.bbk.dcs.automed.qproc.iql.Cell
 -  
 - setFlushTimer() - 
Method in class uk.ac.ic.doc.automed.p2p.directory.HoldTimeHelper
 - If 
FlushTimeHelper thread is not created, create it.
 - setFocus(String) - 
Method in class uk.ac.ic.doc.automed.p2p.gui.graph.GraphViz
 - Activate the workbench tab that contains a component
 - setForegroundColor(Positionable, Color) - 
Method in class uk.ac.ic.doc.automed.editor.EditorPanel
 -  
 - setForegroundColor(Color) - 
Method in interface uk.ac.ic.doc.automed.editor.Positionable
 -  
 - setForegroundColor(Color) - 
Method in class uk.ac.ic.doc.automed.reps.Construct
 - Set the default foreground colour to be used from drawing
 
SchemaObjects of this Construct.
 - setForegroundColor(Color) - 
Method in class uk.ac.ic.doc.automed.reps.Model
 - Set the default foreground colour to be used from drawing
 
SchemaObjects of this Model.
 - setForegroundColor(Color) - 
Method in class uk.ac.ic.doc.automed.reps.Network
 -  
 - setForegroundColor(Color) - 
Method in class uk.ac.ic.doc.automed.reps.Schema
 -  
 - setForegroundColor(Color) - 
Method in class uk.ac.ic.doc.automed.reps.SchemaObject
 -  
 - setForwardDegree(double) - 
Method in class uk.ac.ic.doc.automed.matching.BidirectionalDegree
 -  
 - setFullPatterns() - 
Method in class uk.ac.ic.doc.automed.matching.SchemaElement
 -  
 - setFunctionName(String) - 
Method in class uk.ac.ic.doc.automed.p2p.editor.KRangeEditor
 - update the function name
 - setGenerations(int) - 
Method in class uk.ac.ic.doc.automed.editor.layout.RootLayout
 -  
 - setGeneratorCoverage(int) - 
Method in class uk.ac.ic.doc.automed.p2p.qproc.reformulate.reformulators.QueryPlan
 -  
 - setGenericRoot(boolean) - 
Method in class uk.ac.bbk.dcs.automed.xml.materialisation.XMLDSSMaterialiser
 -  
 - setGlobal(boolean) - 
Method in class uk.ac.ic.doc.automed.p2p.tree.Reference
 -  
 - setGlobalName(String) - 
Method in class uk.ac.ic.doc.automed.reps.Schema
 - The original (global) name of a schema as advertised by a peer.
 - setGraphData(Graph) - 
Method in class uk.ac.ic.doc.automed.p2p.gui.graph.DefaultGraphModel
 -  
 - setGraphData(Graph) - 
Method in interface uk.ac.ic.doc.automed.p2p.gui.graph.GraphModel
 -  
 - setGui(Gui) - 
Static method in class uk.ac.ic.doc.automed.editor.autolayout.AutoLayoutPositionable
 - Describe which 
Gui instance will be used as the basis for
 the obtaining of Drawable instances for the 
 Positionables being drawn.
 - setGui(Gui) - 
Method in class uk.ac.ic.doc.automed.p2p.gui.PeerApplication
 - Set a GUI object
 - setGUIComponent(JComponent) - 
Method in class uk.ac.ic.doc.automed.p2p.editor.GraphVizInternal
 -  
 - setGUIComponent(JComponent) - 
Method in class uk.ac.ic.doc.automed.p2p.gui.graph.GraphViz
 - Change a gui component to the main frame
 - setGVisualisableObjects(Object, Collection) - 
Method in class uk.ac.ic.doc.automed.p2p.gui.PropertyEditor
 - Invoked by GUI components to display a collection of GVisualisable objects
 We need a record set for this
 - setGVisualisableObjects(Object, Collection, int, ActionListener) - 
Method in class uk.ac.ic.doc.automed.p2p.gui.PropertyEditor
 -  
 - setHandler(CommonScreenHandler) - 
Method in class uk.ac.ic.doc.automed.p2p.gui.graph.GraphUI
 -  
 - setHandlerObject(Object) - 
Method in class uk.ac.ic.doc.automed.p2p.gui.graph.GShape
 - The handler object for processing this shape's events
 - setHandlerType(String) - 
Method in class uk.ac.ic.doc.automed.util.queue.Job
 -  
 - setHdmEquiv(int, int) - 
Static method in class uk.ac.ic.doc.automed.MDR
 - Update the hdmEquiv value for a given type
 - setHDMEquiv(TypeHierarchy, int) - 
Method in class uk.ac.ic.doc.automed.reps.TypeHierarchy.TypeObject
 - Set the type id of the HDM equivalent of this type
 - setHdmStore(HdmStore) - 
Method in class uk.ac.bbk.dcs.automed.hdmstore.HdmWrapper
 - Set the HdmStore that this wrapper will use
 - setHDMType(int) - 
Method in class uk.ac.ic.doc.automed.reps.ConstructScheme
 - Sets the HDM type of the 
ConstructScheme.
 - setHeight(double) - 
Method in class uk.ac.ic.doc.automed.p2p.gui.graph.GTable.TableStruct
 -  
 - setHoldTimer() - 
Method in class uk.ac.ic.doc.automed.p2p.directory.HelloTimeHelper
 - If 
HoldTimeHelper thread is not created, create it.
 - setHost(String) - 
Method in class uk.ac.ic.doc.automed.p2p.protocol.model.PeerProcessDescription
 -  
 - setHostnameFromURL() - 
Method in class uk.ac.ic.doc.automed.p2p.protocol.model.PeerDescription
 -  
 - setHref(String) - 
Method in class uk.ac.ic.doc.automed.p2p.wrappers.GoogleScholarWrapper.GSPubRec
 -  
 - setIcon(String) - 
Method in class uk.ac.ic.doc.automed.wrappers.xsdomobject.XSDOMObject
 -  
 - setID(Object) - 
Method in class uk.ac.ic.doc.automed.p2p.gui.HTMLObjectListViewer
 -  
 - setID(Object) - 
Method in interface uk.ac.ic.doc.automed.p2p.gui.ObjectList
 -  
 - setId(String) - 
Method in class uk.ac.ic.doc.automed.p2p.tree.TreeNode
 -  
 - setIDColumn(int) - 
Method in class uk.ac.ic.doc.automed.util.cache.CacheContentDescription
 - The table's ID column
 - setIdentProperty(String) - 
Method in class uk.ac.ic.doc.automed.matching.Integrator
 -  
 - setIgnoreNecessaryConditionsOnDefinedClasses(boolean) - 
Method in class uk.ac.ic.doc.automed.reasoner.DIGTranslatorPreferences
 -  
 - setIncrementalProcessing(int) - 
Method in class uk.ac.bbk.dcs.automed.qproc.QueryProcessorConfiguration
 - Set the number of results to fetch in one batch.
 - setIndentSize(int) - 
Method in class uk.ac.ic.doc.automed.xml.XMLWriter
 -  
 - setIndex(int) - 
Method in class uk.ac.ic.doc.automed.util.cache.CacheItem
 - Set the temporary cache item index in the storage list for reference
 - setInitTime(long) - 
Method in class uk.ac.bbk.dcs.automed.xml.sra.SRAStatistics
 -  
 - setInputDoc(Document) - 
Method in class uk.ac.bbk.dcs.automed.xml.wrappers.DOMWrapper
 -  
 - setInstances(ArrayList) - 
Method in class uk.ac.ic.doc.automed.matching.SchemaElement
 -  
 - setInt(long) - 
Method in class uk.ac.bbk.dcs.automed.qproc.iql.Cell
 -  
 - setIntegrityChecking(boolean) - 
Static method in class uk.ac.ic.doc.automed.reps.Node
 -  
 - setIntersection(Set, Set) - 
Static method in class uk.ac.ic.doc.automed.util.SetUtil
 -  
 - setIsAltDrawing(boolean) - 
Method in class uk.ac.ic.doc.automed.p2p.gui.graph.GShape
 -  
 - setIsChanged(boolean) - 
Method in class uk.ac.ic.doc.automed.p2p.gui.graph.GraphComponent
 - For a graph component, when it is changed we also set the change status of
 all of its children
 - setIsChanged(boolean) - 
Method in class uk.ac.ic.doc.automed.p2p.gui.graph.GShape
 -  
 - setIsGrouped(boolean) - 
Method in class uk.ac.ic.doc.automed.p2p.gui.graph.GraphComponent
 -  
 - setIsHighlighted(boolean) - 
Method in class uk.ac.ic.doc.automed.p2p.gui.graph.GShape
 -  
 - setIsMovable(boolean) - 
Method in class uk.ac.ic.doc.automed.p2p.gui.graph.GShape
 -  
 - setIsOnClick(boolean) - 
Method in class uk.ac.ic.doc.automed.p2p.gui.graph.GShape
 -  
 - setIsProcessed(boolean) - 
Method in class uk.ac.ic.doc.automed.p2p.qproc.planner.QueryPlannerResult
 -  
 - setIsRefresh(boolean) - 
Method in class uk.ac.ic.doc.automed.p2p.gui.graph.GShape
 -  
 - setIsSelectable(boolean) - 
Method in class uk.ac.ic.doc.automed.p2p.gui.graph.GShape
 - Set a shape to selectable will allow the GUI to pick it up on mouse over event.
 - setIsSelected(boolean) - 
Method in class uk.ac.ic.doc.automed.p2p.gui.graph.GCheckBox
 -  
 - setIsVisible(boolean) - 
Method in class uk.ac.ic.doc.automed.p2p.gui.graph.GraphComponent
 -  
 - setIsVisible(boolean) - 
Method in class uk.ac.ic.doc.automed.p2p.gui.graph.GShape
 -  
 - setJoinAnnotation(boolean) - 
Method in class uk.ac.bbk.dcs.automed.qproc.iql.Cell
 -  
 - setJoinAnnotation(boolean) - 
Method in class uk.ac.bbk.dcs.automed.qproc.QueryProcessorConfiguration
 -  
 - setJoinAnnotator(String) - 
Method in class uk.ac.bbk.dcs.automed.qproc.QueryProcessorConfiguration
 -  
 - setJoinCoverage(int) - 
Method in class uk.ac.ic.doc.automed.p2p.qproc.reformulate.reformulators.QueryPlan
 -  
 - setJoinPathLength(int) - 
Method in class uk.ac.ic.doc.automed.p2p.qproc.reformulate.reformulators.QueryPlan
 -  
 - setKey(boolean) - 
Method in class uk.ac.ic.doc.automed.reps.ConstructScheme
 - Sets whether or not the current scheme position is part the
 key of the whole scheme.
 - setKeyEdgeOnly(boolean) - 
Method in class uk.ac.ic.doc.automed.p2p.qproc.reformulate.ReformulationConfiguration
 -  
 - setKeyName(String) - 
Method in class uk.ac.ic.doc.automed.wrappers.xsdomobject.ComplexType
 - Set the primary key for this complexType
 - setKeyRef(ComplexType) - 
Method in class uk.ac.ic.doc.automed.wrappers.xsdomobject.XSDOMObject
 -  
 - setKRange(GShape, KRange) - 
Method in class uk.ac.ic.doc.automed.p2p.editor.KRangeEditor
 - Update the k-range of a shape
 - setKRange(GShape, KRange) - 
Method in class uk.ac.ic.doc.automed.p2p.qproc.commands.KRangeCommand
 - Update the k-range of a shape
 - setLabel(String) - 
Method in interface uk.ac.ic.doc.automed.editor.Positionable
 -  
 - setLabel(String) - 
Method in class uk.ac.ic.doc.automed.p2p.editor.KQueryTree
 -  
 - setLabel(String) - 
Method in class uk.ac.ic.doc.automed.p2p.gui.ComponentPopUp
 - Change the label
 - setLabel(String) - 
Method in class uk.ac.ic.doc.automed.p2p.gui.graph.GraphUI
 -  
 - setLabel(String) - 
Method in class uk.ac.ic.doc.automed.p2p.gui.graph.GShape
 -  
 - setLabel(String) - 
Method in class uk.ac.ic.doc.automed.p2p.gui.HTMLObjectListViewer
 -  
 - setLabel(String) - 
Method in class uk.ac.ic.doc.automed.p2p.gui.ObjectBrowser
 -  
 - setLabel(String) - 
Method in interface uk.ac.ic.doc.automed.p2p.gui.ObjectList
 -  
 - setLabel(String) - 
Method in class uk.ac.ic.doc.automed.p2p.gui.RecordScroller
 - Change the display label next to the control
 - setLabel(String) - 
Method in class uk.ac.ic.doc.automed.reps.Construct
 -  
 - setLabel(String) - 
Method in class uk.ac.ic.doc.automed.reps.Model
 -  
 - setLabel(String) - 
Method in class uk.ac.ic.doc.automed.reps.Network
 -  
 - setLabel(String) - 
Method in class uk.ac.ic.doc.automed.reps.Schema
 -  
 - setLabel(String) - 
Method in class uk.ac.ic.doc.automed.reps.SchemaObject
 -  
 - setLabelPosition(int, int) - 
Method in interface uk.ac.ic.doc.automed.editor.Positionable
 -  
 - setLabelPosition(int, int) - 
Method in class uk.ac.ic.doc.automed.reps.Construct
 -  
 - setLabelPosition(int, int) - 
Method in class uk.ac.ic.doc.automed.reps.Model
 -  
 - setLabelPosition(int, int) - 
Method in class uk.ac.ic.doc.automed.reps.Network
 -  
 - setLabelPosition(int, int) - 
Method in class uk.ac.ic.doc.automed.reps.Schema
 -  
 - setLabelPosition(int, int) - 
Method in class uk.ac.ic.doc.automed.reps.SchemaObject
 -  
 - setLabelXPos(int) - 
Method in interface uk.ac.ic.doc.automed.editor.Positionable
 -  
 - setLabelXPos(int) - 
Method in class uk.ac.ic.doc.automed.reps.Construct
 -  
 - setLabelXPos(int) - 
Method in class uk.ac.ic.doc.automed.reps.Model
 -  
 - setLabelXPos(int) - 
Method in class uk.ac.ic.doc.automed.reps.Network
 -  
 - setLabelXPos(int) - 
Method in class uk.ac.ic.doc.automed.reps.Schema
 -  
 - setLabelXPos(int) - 
Method in class uk.ac.ic.doc.automed.reps.SchemaObject
 -  
 - setLabelYPos(int) - 
Method in interface uk.ac.ic.doc.automed.editor.Positionable
 -  
 - setLabelYPos(int) - 
Method in class uk.ac.ic.doc.automed.reps.Construct
 -  
 - setLabelYPos(int) - 
Method in class uk.ac.ic.doc.automed.reps.Model
 -  
 - setLabelYPos(int) - 
Method in class uk.ac.ic.doc.automed.reps.Network
 -  
 - setLabelYPos(int) - 
Method in class uk.ac.ic.doc.automed.reps.Schema
 -  
 - setLabelYPos(int) - 
Method in class uk.ac.ic.doc.automed.reps.SchemaObject
 -  
 - setLastUpdate(String) - 
Method in class uk.ac.ic.doc.automed.p2p.protocol.model.PeerDescription
 -  
 - setLevel(Node, int) - 
Method in class uk.ac.ic.doc.automed.p2p.qproc.optimise.LevelledGTree
 -  
 - setLikelihood(double) - 
Method in class it.unibo.cs.USI.tools.TopKNode
 -  
 - setListeners() - 
Method in class uk.ac.ic.doc.automed.p2p.gui.LoginFrame
 -  
 - setLocalName(String) - 
Method in class uk.ac.ic.doc.automed.reps.SchemaObject
 -  
 - setLocalRank(Object) - 
Method in class uk.ac.ic.doc.automed.p2p.qproc.planner.QueryPlannerResult.CoverageSet
 -  
 - setLogDIG(boolean) - 
Method in class uk.ac.ic.doc.automed.reasoner.DIGReasonerPreferences
 - Specifies whether or not the DIG communication
 with the reasoner should be logged.
 - setLogging(Level) - 
Method in class uk.ac.bbk.dcs.automed.qproc.QueryProcessorConfiguration
 -  
 - setLoggingBBK(Level) - 
Method in class uk.ac.bbk.dcs.automed.qproc.QueryProcessorConfiguration
 -  
 - setLoggingIC(Level) - 
Method in class uk.ac.bbk.dcs.automed.qproc.QueryProcessorConfiguration
 -  
 - setLogOutputStream(OutputStream) - 
Method in class uk.ac.ic.doc.automed.reasoner.DIGReasonerPreferences
 - Sets the output stream used for logging.
 - setLower(int) - 
Method in class uk.ac.ic.doc.automed.reps.ConstructScheme
 - Sets the lower bound indicating the minimum occurence of the
 
ConstructScheme.
 - setMap(Map) - 
Method in class it.unibo.cs.USI.tools.Solution
 -  
 - setMap - 
Static variable in class uk.ac.bbk.dcs.automed.qproc.translators.sql.SQL2IQL
 -  
 - setMapping(int) - 
Method in class it.unibo.cs.USI.tools.MappingValuePair
 -  
 - setMatched(boolean) - 
Method in class uk.ac.ic.doc.automed.modelmanagement.matchmodel.MatchObject
 -  
 - setMatchedTarget(Construct) - 
Method in class uk.ac.ic.doc.automed.modelmanagement.matchmodel.MatchObject
 -  
 - setMax(Comparable) - 
Method in class uk.ac.ic.doc.automed.matching.Range
 -  
 - setMaxLikelihoodInSubtree(double) - 
Method in class it.unibo.cs.USI.tools.TopKNode
 -  
 - setMaxOccurs(String) - 
Method in class uk.ac.ic.doc.automed.wrappers.xsdomobject.XSDOMObject
 -  
 - setMaxReqCounter(int) - 
Method in class uk.ac.ic.doc.automed.p2p.qproc.planner.QPlannerMain.Timer
 - Set a maximum number of network message requests that the timer is
 expected to keep track of (this is used along side the max timer)
 - setMaxTime(long) - 
Method in class uk.ac.ic.doc.automed.p2p.qproc.planner.QPlannerMain.Timer
 -  
 - setMDR_DataSourceName(String) - 
Static method in class uk.ac.ic.doc.automed.MDR
 - Deprecated. use 
setDataSourceName() instead
 - setMenuEnabled(String, boolean) - 
Method in class uk.ac.ic.doc.automed.p2p.editor.KQueryMain
 -  
 - setMenuItems(String[]) - 
Method in class uk.ac.ic.doc.automed.p2p.editor.MenuPopUpHelper
 -  
 - setMin(Comparable) - 
Method in class uk.ac.ic.doc.automed.matching.Range
 -  
 - setMinChildToCreate(int) - 
Method in class it.unibo.cs.USI.tools.TopKNode
 -  
 - setMinOccurs(String) - 
Method in class uk.ac.ic.doc.automed.wrappers.xsdomobject.XSDOMObject
 -  
 - setMode(int) - 
Method in class uk.ac.ic.doc.automed.p2p.gui.graph.commands.GCommandFactory
 -  
 - setMode(int) - 
Method in class uk.ac.ic.doc.automed.p2p.gui.graph.GraphUI
 -  
 - setMode(int) - 
Method in class uk.ac.ic.doc.automed.p2p.gui.graph.GraphViz
 -  
 - setMode(Integer, Integer, Object) - 
Method in class uk.ac.ic.doc.automed.util.cache.ObjectCache
 - Turn on caching of a mode
 - setMode(Integer, Integer) - 
Method in class uk.ac.ic.doc.automed.util.cache.ObjectCache
 - Change the caching state of a mode
 - setModel(TreeModel) - 
Method in class uk.ac.ic.doc.automed.p2p.editor.KQueryTree
 -  
 - setModel(Collection, Collection) - 
Method in class uk.ac.ic.doc.automed.p2p.gui.HTMLObjectListViewer
 - Add objects to display
 - setModel(Collection, Collection) - 
Method in interface uk.ac.ic.doc.automed.p2p.gui.ObjectList
 - Populate the list with data
 - setModel(TreeModel) - 
Method in class uk.ac.ic.doc.automed.p2p.gui.PeerListPanel
 -  
 - setModelBaseName(String) - 
Method in class uk.ac.ic.doc.automed.modelmanagement.modeldef.ModelDef
 - Each implementing class gives a name for the 
Models that
 will be generated for Schemas.
 - setModelDefinition(ModelDef) - 
Method in class uk.ac.ic.doc.automed.wrappers.AutoMedWrapperFactory
 - Each wrapper factory has a specific 
ModelDef associated with it
 - setModelName(String) - 
Method in class uk.ac.bbk.dcs.automed.qproc.iql.SchemeInfo
 -  
 - setModelName(int, String) - 
Static method in class uk.ac.ic.doc.automed.MDR
 -  
 - setModelNames() - 
Method in class uk.ac.ic.doc.automed.modelmanagement.modeldef.ModelDef
 -  
 - setName(String) - 
Method in class uk.ac.bbk.dcs.automed.graph.TreeNode
 -  
 - setName(String) - 
Method in class uk.ac.bbk.dcs.automed.xml.sra.old.xmldssGraph.XMLDSSGraphAttribute
 -  
 - setName(String) - 
Method in class uk.ac.ic.doc.automed.matching.SchemaElement
 - Sets the name of the schema element.
 - setName(String) - 
Method in class uk.ac.ic.doc.automed.p2p.AutoMedPeer
 - Set a new name for peer
 - setName(String) - 
Method in class uk.ac.ic.doc.automed.p2p.gui.graph.GShape
 -  
 - setName(String) - 
Method in class uk.ac.ic.doc.automed.p2p.messages.applicationlayer.HelloMsg
 -  
 - setName(String) - 
Method in class uk.ac.ic.doc.automed.p2p.protocol.model.PeerProcessDescription
 -  
 - setName(String) - 
Method in class uk.ac.ic.doc.automed.reps.Construct
 - Sets the name of the construct to the given string.
 - setName(String) - 
Method in class uk.ac.ic.doc.automed.reps.Model
 - Sets the model's name.
 - setName(String) - 
Method in class uk.ac.ic.doc.automed.reps.Protocol
 - Sets the name of the protocol to the given string.
 - setName(String) - 
Method in class uk.ac.ic.doc.automed.reps.RelationalOutputter.SQLTable
 -  
 - setName(String) - 
Method in class uk.ac.ic.doc.automed.reps.Schema
 - Set the name of a Schema.
 - setName(String) - 
Method in class uk.ac.ic.doc.automed.util.graph.impl.HDMObject
 -  
 - setName(String) - 
Method in class uk.ac.ic.doc.automed.wrappers.xsdomobject.XSDOMObject
 - Set the name for this object
 - setNamespaceAware(boolean) - 
Method in class uk.ac.ic.doc.automed.xml.XMLReader
 -  
 - setNextState(YattaWrapper.StateGraphNode) - 
Method in class uk.ac.ic.doc.automed.wrappers.YattaWrapper.StateGraphNode
 -  
 - setNodeLabels(Map) - 
Method in class uk.ac.ic.doc.automed.matching.modules.bidirectionalmap.MapDisplay
 - This method is called from within the constructor to
 initialize the form.
 - setNodeName(String) - 
Method in class uk.ac.bbk.dcs.automed.xml.sra.old.xmldssGraph.XMLDSSGraphElement
 -  
 - setNodes(Collection) - 
Method in class uk.ac.ic.doc.automed.p2p.gui.graph.GraphComponent
 -  
 - setNodesArray(GNode[]) - 
Method in class uk.ac.ic.doc.automed.p2p.gui.graph.GraphComponent
 -  
 - setNonAtomicPairRelationships(SchemaElementPairRelationship[]) - 
Method in class uk.ac.ic.doc.automed.matching.RelationshipExtractor
 - Sets the relationships of pairs of non-atomic schema elements.
 - setNotification(String) - 
Method in class uk.ac.ic.doc.automed.p2p.gui.graph.GraphViz
 - Only show some indication that the tab has some content to show
 - setNotifiedWorkbenchTab(String) - 
Method in class uk.ac.ic.doc.automed.p2p.gui.graph.GraphViz
 -  
 - setNumberInstancesModule(AbstractModule) - 
Method in class uk.ac.ic.doc.automed.matching.DegreeCombinator
 - Sets the number of instances module of this 
DegreeCombinator
 - setNumGenerators(int) - 
Method in class uk.ac.ic.doc.automed.p2p.qproc.reformulate.reformulators.QueryPlan
 -  
 - setNumOfTuples(int) - 
Method in class uk.ac.ic.doc.automed.matching.SchemaElement
 -  
 - setNumPeers(int) - 
Method in class uk.ac.ic.doc.automed.p2p.qproc.reformulate.reformulators.QueryPlan
 -  
 - setNumSchemas(int) - 
Method in class uk.ac.ic.doc.automed.p2p.qproc.reformulate.reformulators.QueryPlan
 -  
 - setOBID(boolean) - 
Method in class uk.ac.bbk.dcs.automed.qproc.iql.TextIQL
 -  
 - setObjectAt(Object, int) - 
Method in class uk.ac.ic.doc.automed.p2p.gui.graph.GTable.TableStruct
 -  
 - setObjectByShape(Object, Object) - 
Method in class uk.ac.ic.doc.automed.p2p.gui.graph.DefaultGraphModel
 - Add an entry that maps the ID of a shape that represents that object to the
 id of the object
 - setObjectbyShape(GraphUI, Object, GShape) - 
Method in class uk.ac.ic.doc.automed.p2p.gui.graph.GraphViz
 - Add a mapping between an object and its graphical shape to the model of the
 GraphUI object on which the shape was drawn.
 - setObjectProp(int, int, String, int, String) - 
Static method in class uk.ac.ic.doc.automed.STR
 -  
 - setObjectProp(int, int, String, int, String, boolean) - 
Static method in class uk.ac.ic.doc.automed.STR
 -  
 - setObjects(Vector) - 
Method in class uk.ac.ic.doc.automed.p2p.gui.graph.GTable.TableStruct
 -  
 - setObjects(Object, Collection, int, ActionListener) - 
Method in class uk.ac.ic.doc.automed.p2p.gui.PropertyEditor
 -  
 - setOffset(int, int) - 
Method in class uk.ac.ic.doc.automed.editor.layout.RootLayout
 -  
 - setOpenCloseSchemeBracket(String, String) - 
Static method in class uk.ac.ic.doc.automed.reps.Schema
 - Set the 
Strings that is used to open and
 close a scheme name,
 such as the "<<" and ">>" in "<<person>>"
 or "<<person,name>>".
- setOpenSchemeBracket(String) - 
Static method in class uk.ac.ic.doc.automed.STR
 - Set the 
String that is used to open a scheme name,
 such as "<<person>>" or "<<person,name>>".
- setOptimisationAnnotation(int) - 
Method in class uk.ac.bbk.dcs.automed.qproc.iql.Cell
 -  
 - setOptimisationCacheState(boolean) - 
Method in class uk.ac.bbk.dcs.automed.qproc.QueryProcessorConfiguration
 -  
 - setOptimisationCachingState(double) - 
Method in class uk.ac.bbk.dcs.automed.qproc.QueryProcessorConfiguration
 - Determines the amount of time (seconds) after which an optimisation result is worthy of being cached.
 - setOptimisationState(boolean) - 
Method in class uk.ac.bbk.dcs.automed.qproc.QueryProcessorConfiguration
 - Determines whether optimisation will take place
 - setOptimisationTimestamp(long) - 
Method in class uk.ac.bbk.dcs.automed.qproc.QueryProcessorConfiguration
 - Determines when a cached optimisation result expires (seconds).
 - setOptimiser(String) - 
Method in class uk.ac.bbk.dcs.automed.qproc.QueryProcessorConfiguration
 -  
 - setOption(String, String) - 
Method in class uk.ac.ic.doc.automed.wrappers.AutoMedWrapper
 - Make an option setting.
 - setOptions(BBKSQLWrapper) - 
Method in class uk.ac.bbk.dcs.automed.wrappers.IQL2SQLTranslator
 -  
 - setOrdered(boolean) - 
Method in class uk.ac.ic.doc.automed.wrappers.YattaWrapper.YattaNode
 -  
 - setOutput(Object) - 
Method in class uk.ac.ic.doc.automed.p2p.gui.graph.commands.GCommand
 -  
 - setOutput(RuntimeParameters) - 
Method in class uk.ac.ic.doc.automed.p2p.util.logging.ProcessNode
 -  
 - setOutputHandler(LogOutputHandler) - 
Static method in class uk.ac.ic.doc.automed.util.Logger
 - Change default log handler
 - setOverallTime(long) - 
Method in class uk.ac.bbk.dcs.automed.xml.sra.SRAStatistics
 -  
 - setOwner(XMLDSSGraphElement) - 
Method in class uk.ac.bbk.dcs.automed.xml.sra.old.xmldssGraph.XMLDSSGraphAttribute
 -  
 - setOwnerGraph(XMLDSSGraph) - 
Method in class uk.ac.bbk.dcs.automed.xml.sra.old.xmldssGraph.XMLDSSGraphElement
 -  
 - setParameter(String, Object) - 
Method in class uk.ac.ic.doc.automed.util.RuntimeParameters
 - Setter for a parameter.
 - setParameters(RuntimeParameters) - 
Method in class uk.ac.ic.doc.automed.p2p.qproc.planner.QueryPlannerResult
 -  
 - setParameters(RuntimeParameters) - 
Method in class uk.ac.ic.doc.automed.p2p.qproc.reformulate.ReformulationConfiguration
 -  
 - setParameters(RuntimeParameters) - 
Method in class uk.ac.ic.doc.automed.util.RuntimeParameters
 -  
 - setParameters(Map) - 
Method in class uk.ac.ic.doc.automed.util.RuntimeParameters
 -  
 - setParent(TopKNode) - 
Method in class it.unibo.cs.USI.tools.TopKNode
 -  
 - setParent(TreeNode) - 
Method in class uk.ac.bbk.dcs.automed.graph.TreeNode
 - Sets the parent node.
 - setParent(XMLDSSGraphElement) - 
Method in class uk.ac.bbk.dcs.automed.xml.sra.old.xmldssGraph.XMLDSSGraphElement
 -  
 - setParent(XMLDSSGraphElement) - 
Method in class uk.ac.bbk.dcs.automed.xml.sra.old.xmldssGraph.XMLDSSGraphText
 -  
 - setParent(TreeNode) - 
Method in class uk.ac.ic.doc.automed.p2p.tree.TreeNode
 -  
 - setParent(String) - 
Method in class uk.ac.ic.doc.automed.wrappers.xsdomobject.XSDOMObject
 - Set the parent for this object
 - setParent(YattaWrapper.YattaNode) - 
Method in class uk.ac.ic.doc.automed.wrappers.YattaWrapper.YattaNode
 -  
 - setParents(Node[]) - 
Method in class uk.ac.ic.doc.automed.reps.Node
 -  
 - setParentSchemaObject(SchemaObject) - 
Method in class uk.ac.ic.doc.automed.wrappers.xsdomobject.XSDOMObject
 - Set the parent schema object for this object
 - setPassword(String) - 
Method in class uk.ac.ic.doc.automed.reps.AccessMethod
 - Sets the password used for connecting to the database.
 - setPath(ASG) - 
Method in class uk.ac.bbk.dcs.automed.xml.sca.SchemaConformanceRule
 -  
 - setPathwayToDerivedSchema() - 
Method in class uk.ac.bbk.dcs.automed.evolution.schemaEvolution.SchemaEvolution
 -  
 - setPatterns() - 
Method in class uk.ac.ic.doc.automed.matching.SchemaElement
 -  
 - setPatternToSchemaObject(SSDPattern, SchemaObject, int) - 
Method in class uk.ac.ic.doc.automed.ssd.SSDFormat
 -  
 - setPatternValue(int, String) - 
Static method in class uk.ac.ic.doc.automed.SSMDR
 - Sets the value of the pattern.
 - setPeer(Peer) - 
Method in class uk.ac.ic.doc.automed.p2p.AppContext
 -  
 - setPeer(String) - 
Method in class uk.ac.ic.doc.automed.util.graph.impl.HDMObject
 -  
 - setPeerAddress(InetAddress) - 
Method in class uk.ac.ic.doc.automed.p2p.AutoMedPeer
 -  
 - setPeerInstance(Peer) - 
Method in class uk.ac.ic.doc.automed.p2p.protocol.AbstractProtocol
 - Because we must maintain separate AutoMedPeer instances for normal peer and
 directory service, we must decide which instance to use at protocol
 initialisation time
 - setPeerInstance(AutoMedPeer) - 
Method in class uk.ac.ic.doc.automed.p2p.protocol.SICP
 - Because we must maintain separate AutoMedPeer instances for normal peer and
 directory service, we must decide which instance to use at protocol
 initialisation time
 - setPeerName(String) - 
Method in class uk.ac.bbk.dcs.automed.qproc.iql.SchemeInfo
 -  
 - setPeerState(int) - 
Method in class uk.ac.ic.doc.automed.p2p.AutoMedPeer
 - Return reference to 
PeerStateHandler object
 - setPersistentHandler(PersistentHandler) - 
Method in interface uk.ac.ic.doc.automed.util.persist.Persistence
 - Implement this method for serialising cache content
 - setPhase1Time(long) - 
Method in class uk.ac.bbk.dcs.automed.xml.sra.SRAStatistics
 -  
 - setPhase2Time(long) - 
Method in class uk.ac.bbk.dcs.automed.xml.sra.SRAStatistics
 -  
 - setPK(String) - 
Method in class uk.ac.ic.doc.automed.reps.RelationalOutputter.SQLTable
 -  
 - setPKName(String) - 
Method in class uk.ac.ic.doc.automed.reps.RelationalOutputter.SQLTable
 -  
 - setPlanQuery(ASG) - 
Method in class uk.ac.ic.doc.automed.p2p.qproc.reformulate.reformulators.QueryPlan
 -  
 - setPoint(Point) - 
Method in class uk.ac.ic.doc.automed.p2p.gui.graph.GraphUI
 -  
 - setPoint(GraphUI, Point) - 
Method in class uk.ac.ic.doc.automed.p2p.gui.graph.GraphViz
 - Manually set the drawing point
 - setPort(int) - 
Method in class uk.ac.ic.doc.automed.p2p.messages.applicationlayer.HelloMsg
 -  
 - setPort(String) - 
Method in class uk.ac.ic.doc.automed.p2p.protocol.model.PeerDescription
 -  
 - setPort(int) - 
Method in class uk.ac.ic.doc.automed.p2p.protocol.model.PeerProcessDescription
 -  
 - setPosition(int, int) - 
Method in class uk.ac.ic.doc.automed.editor.autolayout.AutoLayout
 -  
 - setPosition(int, int) - 
Method in class uk.ac.ic.doc.automed.editor.autolayout.AutoLayoutPositionable
 -  
 - setPosition(int, int) - 
Method in interface uk.ac.ic.doc.automed.editor.Positionable
 -  
 - setPosition(int, int) - 
Method in class uk.ac.ic.doc.automed.reps.Construct
 -  
 - setPosition(int, int) - 
Method in class uk.ac.ic.doc.automed.reps.Model
 -  
 - setPosition(int, int) - 
Method in class uk.ac.ic.doc.automed.reps.Network
 -  
 - setPosition(int, int) - 
Method in class uk.ac.ic.doc.automed.reps.Schema
 -  
 - setPosition(int, int) - 
Method in class uk.ac.ic.doc.automed.reps.SchemaObject
 -  
 - setPrecisionModule(AbstractModule) - 
Method in class uk.ac.ic.doc.automed.matching.DegreeCombinator
 - Sets the 
PrecisionModule of this DegreeCombinator
 - setPrettifyAttributes(boolean) - 
Method in class uk.ac.ic.doc.automed.xml.XMLWriter
 -  
 - setPrimaryKey(XSDOMObject) - 
Method in class uk.ac.ic.doc.automed.wrappers.xsdomobject.Element
 - Set the primary key for this Element
 - setPrintStream(PrintStream) - 
Method in class uk.ac.bbk.dcs.automed.xml.sra.old.xmldssGraph.XMLDSSRestructurer
 -  
 - setProbProportionalToIDSpace(double) - 
Method in class uk.ac.ic.doc.automed.p2p.routing.CresendoConfiguration
 -  
 - setProperties(Properties) - 
Method in class uk.ac.ic.doc.automed.p2p.AppToolKit.NodeConfig
 - Add a collection of properties to this configuration file
 - setProperties(Properties) - 
Method in class uk.ac.ic.doc.automed.p2p.gui.graph.GShape
 -  
 - setProperties(Object, Collection) - 
Method in class uk.ac.ic.doc.automed.p2p.gui.PropertyEditor
 -  
 - setProperties(Point, Object, Collection) - 
Method in class uk.ac.ic.doc.automed.p2p.gui.PropertyEditor
 - Invoked by GUI components to display property objects of one GVisualsable
 object
 - setProperties(Point, Object, Collection) - 
Method in class uk.ac.ic.doc.automed.p2p.gui.PropertyEditorPopUp
 - Invoked by GUI components to display property of a shape
 - setProperty(String, String) - 
Method in class uk.ac.ic.doc.automed.p2p.AppToolKit.NodeConfig
 - Return TCP properties
 - setProperty(String, String) - 
Method in class uk.ac.ic.doc.automed.p2p.gui.graph.GShape
 -  
 - setProperty(String, String) - 
Method in interface uk.ac.ic.doc.automed.p2p.gui.graph.GVisualisable
 -  
 - setProperty(String, String) - 
Method in class uk.ac.ic.doc.automed.reps.AccessMethod
 - Sets a property associated with this AccessMethod.
 - setProperty(String, String) - 
Method in class uk.ac.ic.doc.automed.reps.Schema
 - Sets a property associated with this Schema.
 - setProperty(String, String) - 
Method in class uk.ac.ic.doc.automed.reps.Transformation
 - Sets a property associated with this Transformation.
 - setProperty(String, String) - 
Method in class uk.ac.ic.doc.automed.util.graph.impl.DataGraph
 -  
 - setProperty(String, String) - 
Method in class uk.ac.ic.doc.automed.util.graph.impl.HDMGraph
 -  
 - setPropertyObject(String, Object) - 
Method in class uk.ac.ic.doc.automed.p2p.gui.graph.GShape
 -  
 - setProtocol(Protocol) - 
Method in class uk.ac.ic.doc.automed.reps.AccessMethod
 - Sets the protocol used for connecting to the database.
 - setProtocolName(int, String) - 
Static method in class uk.ac.ic.doc.automed.STR
 - Sets the name of the protocol specified by the given protocol identifier
 (PID).
 - setPublicName(String) - 
Method in class uk.ac.ic.doc.automed.xml.XMLWriter
 -  
 - setPublicSchemas(List) - 
Method in class uk.ac.ic.doc.automed.p2p.PeerCache
 - Assign a list of public schemas (i.e.
 - setPubVenue(String) - 
Method in class uk.ac.ic.doc.automed.p2p.wrappers.GoogleScholarWrapper.GSPubRec
 -  
 - setQuality(int) - 
Method in class uk.ac.ic.doc.automed.reps.pathway.PathwayFinderConfiguration
 -  
 - setQuery(String) - 
Method in class uk.ac.ic.doc.automed.matching.SchemaElement
 -  
 - setQueryGraph(Graph, String, boolean) - 
Method in class uk.ac.ic.doc.automed.p2p.qproc.planner.QueryPlannerResult
 -  
 - setQueryLanguage(int) - 
Method in class uk.ac.bbk.dcs.automed.qproc.QueryProcessorConfiguration
 - Return the query language
 - setQueryPlannerResult(QueryPlannerResult) - 
Method in class uk.ac.ic.doc.automed.p2p.qproc.planner.QPlannerDataModel
 -  
 - setQueryProcessorQueryCopies(boolean) - 
Method in class uk.ac.bbk.dcs.automed.qproc.QueryProcessorConfiguration
 -  
 - setQueryRewriterAlgorithm(String) - 
Method in class uk.ac.bbk.dcs.automed.qproc.QueryProcessorConfiguration
 -  
 - setQueryText(String) - 
Method in class uk.ac.ic.doc.automed.p2p.gui.ASGResultTable
 -  
 - setQueryVariables(String) - 
Method in class uk.ac.ic.doc.automed.matching.SchemaElement
 -  
 - setQueueWorker(QueueWorker) - 
Method in class uk.ac.ic.doc.automed.util.queue.Queue
 - Register the 
QueueWorker object to update queue
 - setRangeSemantics(int) - 
Method in class uk.ac.bbk.dcs.automed.qproc.QueryProcessorConfiguration
 - Set range semantics, i.e.
 - setRank(double) - 
Method in class uk.ac.ic.doc.automed.util.graph.impl.HDMGraph
 -  
 - setReadyState(boolean) - 
Method in class uk.ac.ic.doc.automed.p2p.communication.AbstractClient
 -  
 - setReadyState(boolean) - 
Method in class uk.ac.ic.doc.automed.p2p.communication.AbstractServer
 -  
 - setRealObject(PersistentObject) - 
Method in class uk.ac.ic.doc.automed.p2p.tree.AutoMedObject
 -  
 - setRealObject(PersistentObject) - 
Method in class uk.ac.ic.doc.automed.p2p.tree.Reference
 -  
 - setReasonerIdentity(DIGReasonerIdentity) - 
Method in class uk.ac.ic.doc.automed.reasoner.DefaultDIGRenderer
 -  
 - setReasonerIdentity(DIGReasonerIdentity) - 
Method in class uk.ac.ic.doc.automed.reasoner.DefaultDIGTranslator
 -  
 - setReasonerIdentity(DIGReasonerIdentity) - 
Method in interface uk.ac.ic.doc.automed.reasoner.DIGRenderer
 - Sets the DIG Reasoner Identity that will constrain
 the representation when OWLModel elements are translated
 to DIG.
 - setReasonerIdentity(DIGReasonerIdentity) - 
Method in interface uk.ac.ic.doc.automed.reasoner.DIGTranslator
 - Sets the reasoner identity that the translator will respect
 when it translates the ontology DIG.
 - setReasonerIdentity(DIGReasonerIdentity) - 
Method in class uk.ac.ic.doc.automed.reasoner.HDMDIGRenderer
 -  
 - setReasonerIdentity(DIGReasonerIdentity) - 
Method in class uk.ac.ic.doc.automed.reasoner.HDMDIGTranslator
 -  
 - setReasonerURL(String) - 
Method in class uk.ac.ic.doc.automed.reasoner.DefaultDIGReasoner
 - Sets the URL of the inference.
 - setReasonerURL(String) - 
Method in interface uk.ac.ic.doc.automed.reasoner.DIGReasoner
 - Sets the URL of the reasoner.
 - setReasonerURL(String) - 
Method in class uk.ac.ic.doc.automed.reasoner.HDMDIGReasoner
 - Sets the URL of the inference.
 - setRecursive(boolean) - 
Method in class uk.ac.ic.doc.automed.p2p.qproc.reformulate.ReformulationConfiguration
 -  
 - setRefAction(int) - 
Method in class uk.ac.ic.doc.automed.tml.TempTML
 -  
 - setRefConstraint(String) - 
Method in class uk.ac.ic.doc.automed.tml.TempTML
 -  
 - setRefConstructName(String) - 
Method in class uk.ac.ic.doc.automed.tml.TempTML
 -  
 - setRefFromObjName(String) - 
Method in class uk.ac.ic.doc.automed.tml.TempTML
 -  
 - setRefFunction(String) - 
Method in class uk.ac.ic.doc.automed.tml.TempTML
 -  
 - setRefModelName(String) - 
Method in class uk.ac.ic.doc.automed.tml.TempTML
 -  
 - setRefObjNewString(String) - 
Method in class uk.ac.ic.doc.automed.tml.TempTML
 -  
 - setRefObjOrigString(String) - 
Method in class uk.ac.ic.doc.automed.tml.TempTML
 -  
 - setReformulationSemantics(int) - 
Method in class uk.ac.bbk.dcs.automed.qproc.QueryProcessorConfiguration
 -  
 - setReformulator(String) - 
Method in class uk.ac.bbk.dcs.automed.qproc.QueryProcessorConfiguration
 -  
 - setRefToObjName(String) - 
Method in class uk.ac.ic.doc.automed.tml.TempTML
 -  
 - setRelationship(SemanticRelationship) - 
Method in class uk.ac.ic.doc.automed.matching.SchemaElementPairRelationship
 - Sets the semantic relationship between the first and the second element in the pair.
 - setRelationships(SchemaElementPairRelationship[]) - 
Method in class uk.ac.ic.doc.automed.editor.MatchingTool.ComboBoxRenderer
 -  
 - setRelationships(SchemaElementPairRelationship[]) - 
Method in class uk.ac.ic.doc.automed.editor.MatchingTool.MyDefaultTableCellRenderer
 -  
 - setRelationships(SchemaElementPairRelationship[]) - 
Method in class uk.ac.ic.doc.automed.editor.MatchingTool.MyTableModel
 -  
 - setRelationships(SchemaElementPairRelationship[]) - 
Method in class uk.ac.ic.doc.automed.editor.MatchingTool
 -  
 - setRelationships(SchemaElementPairRelationship[]) - 
Method in class uk.ac.ic.doc.automed.matching.Integrator
 - Sets the discovered relationships between the schema elements.
 - setRelationships(SchemaElementPairRelationship[]) - 
Method in class uk.ac.ic.doc.automed.matching.SQLIntegratorMerger
 -  
 - setRemoteParameter(String, Object) - 
Method in class uk.ac.ic.doc.automed.util.RuntimeParameters
 - parameters to be read by remote functions.
 - setRemoteStatus(boolean) - 
Method in class uk.ac.ic.doc.automed.p2p.KeepAliveMessageHandler
 -  
 - setRepeatInfo(Hashtable, Group, boolean, boolean) - 
Static method in class uk.ac.bbk.dcs.automed.xml.wrappers.XMLDSSFromDTD
 -  
 - setResult(ASG) - 
Method in class uk.ac.ic.doc.automed.p2p.qproc.ASGResultSet
 - Set the result set after query execution
 - setResultObj(Object) - 
Method in class uk.ac.ic.doc.automed.editor.UserActionResult
 -  
 - setResultQuality(Properties) - 
Method in class uk.ac.bbk.dcs.automed.qproc.QueryProcessorConfiguration
 - Quality factors of a query result.
 - setRoot(boolean) - 
Method in class uk.ac.ic.doc.automed.reps.Construct
 - Sets whether or not the construct is a construct type of its
 underlying data model.
 - setRoot(Node) - 
Method in class uk.ac.ic.doc.automed.util.graph.impl.GTree
 -  
 - setRoot(Element) - 
Method in class uk.ac.ic.doc.automed.wrappers.xsdomobject.Document
 - Return the root element of this document
 - setRootNode(SchemaObject[]) - 
Method in class uk.ac.ic.doc.automed.editor.layout.RootLayout
 -  
 - setRuntimeParameters(RuntimeParameters) - 
Method in class uk.ac.bbk.dcs.automed.qproc.QueryProcessorConfiguration
 - Set application run-time parameters for use by other components
 - sets - 
Variable in class it.unibo.cs.belief.TreeBeliefFunction
 -  
 - setSchema(String) - 
Method in class uk.ac.bbk.dcs.automed.hdmstore.HdmWrapper
 - Set the value of the schema that this wrapper is for
 - setSchema(Schema) - 
Method in class uk.ac.ic.doc.automed.editor.TransformationTool
 -  
 - setSchema(Schema) - 
Method in class uk.ac.ic.doc.automed.editor.XMLSchemaEditor
 - Set the value of the Automed schema for this object
 - setSchema(Schema) - 
Method in class uk.ac.ic.doc.automed.modelmanagement.mapping.HDMTransformations
 - Set the schema for this object
 - setSchema(Schema) - 
Method in class uk.ac.ic.doc.automed.modelmanagement.modelgen.HDMToEER
 - Set the schema to transform
 - setSchema(Schema) - 
Method in class uk.ac.ic.doc.automed.modelmanagement.modelgen.HDMToHighLevel
 - Set the schema to transform
 - setSchema(Schema) - 
Method in class uk.ac.ic.doc.automed.modelmanagement.modelgen.HDMToRDFS
 - Set the schema to transform
 - setSchema(Schema) - 
Method in class uk.ac.ic.doc.automed.modelmanagement.modelgen.HDMToRelational
 - Set the schema to transform
 - setSchema(Schema) - 
Method in class uk.ac.ic.doc.automed.reps.AccessMethod
 - Sets the schema that represents the database to which the access method
 connects.
 - setSchema(Schema) - 
Method in class uk.ac.ic.doc.automed.reps.SchemaObject
 - Sets the schema to which the schema object belongs.
 - setSchema(Schema) - 
Method in class uk.ac.ic.doc.automed.ssd.SSDFormat
 -  
 - setSchema(int, int) - 
Static method in class uk.ac.ic.doc.automed.SSMDR
 - Sets the SID for the ssd format.
 - setSchema(String) - 
Method in class uk.ac.ic.doc.automed.util.graph.impl.HDMObject
 -  
 - setSchema(Schema) - 
Method in class uk.ac.ic.doc.automed.xmlschema.tree.TreeDropTarget
 - Set the current schema
 - setSchemaBackgroundColor(int, int) - 
Static method in class uk.ac.ic.doc.automed.STR
 -  
 - setSchemaDoc(Document) - 
Method in class uk.ac.bbk.dcs.automed.xml.wrappers.XMLWrapper
 -  
 - setSchemaForegroundColor(int, int) - 
Static method in class uk.ac.ic.doc.automed.STR
 -  
 - setSchemaLabelPos(int, int, int) - 
Static method in class uk.ac.ic.doc.automed.STR
 -  
 - setSchemaName(String) - 
Method in class uk.ac.bbk.dcs.automed.qproc.iql.SchemeInfo
 -  
 - setSchemaName(int, String) - 
Static method in class uk.ac.ic.doc.automed.STR
 - Sets the name of schema.
 - setSchemaName(String) - 
Method in class uk.ac.ic.doc.automed.util.graph.impl.HDMGraph
 -  
 - setSchemaObject(SchemaObject) - 
Method in class uk.ac.bbk.dcs.automed.qproc.iql.SchemeInfo
 -  
 - setSchemaObject(SchemaObject) - 
Method in class uk.ac.ic.doc.automed.wrappers.xsdomobject.ComplexType
 - Set the AutoMed SchemaObject
 - setSchemaObjectBackgroundColor(int, int) - 
Static method in class uk.ac.ic.doc.automed.STR
 -  
 - setSchemaObjectCID(int, int) - 
Static method in class uk.ac.ic.doc.automed.STR
 - Sets the construct identifier (CID) of the schema object.
 - setSchemaObjectForegroundColor(int, int) - 
Static method in class uk.ac.ic.doc.automed.STR
 -  
 - setSchemaObjectID(int) - 
Method in class uk.ac.bbk.dcs.automed.qproc.iql.SchemeInfo
 -  
 - setSchemaObjectKMap(int, int, String) - 
Static method in class uk.ac.ic.doc.automed.STR
 - keyword mapping of schema object
 - setSchemaObjectLabelPos(int, int, int) - 
Static method in class uk.ac.ic.doc.automed.STR
 -  
 - setSchemaObjectLocalName(int, String) - 
Static method in class uk.ac.ic.doc.automed.STR
 -  
 - setSchemaObjectMetadata(int, int, String) - 
Static method in class uk.ac.ic.doc.automed.STR
 - schema object metadata
 - setSchemaObjectPos(int, int, int) - 
Static method in class uk.ac.ic.doc.automed.STR
 -  
 - setSchemaObjectSID(int, int) - 
Static method in class uk.ac.ic.doc.automed.STR
 - Sets the schema identifier (SID) to which a particular schema object
 belongs.
 - setSchemaObjectTextColor(int, int) - 
Static method in class uk.ac.ic.doc.automed.STR
 -  
 - setSchemaObjectType(int) - 
Method in class uk.ac.ic.doc.automed.reps.SchemaObject
 - Set type_id for schema object
 - setSchemaObjectType(int, int) - 
Static method in class uk.ac.ic.doc.automed.STR
 - Save type id for schema object
 - setSchemaObjectValue(int, String) - 
Static method in class uk.ac.ic.doc.automed.STR
 - Sets the name/value of the schema object.
 - setSchemaPos(int, int, int) - 
Static method in class uk.ac.ic.doc.automed.STR
 -  
 - setSchemaProperty(int, String, String) - 
Static method in class uk.ac.ic.doc.automed.STR
 -  
 - setSchemas(Schema[]) - 
Method in class uk.ac.ic.doc.automed.matching.Integrator
 -  
 - setSchemas(Schema[]) - 
Method in class uk.ac.ic.doc.automed.matching.RelationshipExtractor
 -  
 - setSchemas(Schema[]) - 
Method in class uk.ac.ic.doc.automed.matching.SQLIntegrator
 - Sets the schemas that are going to be integrated.
 - setSchemas(Schema[]) - 
Method in class uk.ac.ic.doc.automed.matching.SQLRelationshipExtractor
 - Sets the schemas that are being matched.
 - setSchemaSubnetSID(int, int) - 
Static method in class uk.ac.ic.doc.automed.STR
 - Sets the subnet SID of a schema.
 - setSchemaTextColor(int, int) - 
Static method in class uk.ac.ic.doc.automed.STR
 -  
 - setSchemaType(int, int) - 
Static method in class uk.ac.ic.doc.automed.STR
 - Sets the type of a schema.
 - setSchemaUIDDoc(Document) - 
Method in class uk.ac.bbk.dcs.automed.xml.wrappers.XMLWrapper
 -  
 - setSchemeDefinition(Object[]) - 
Method in class uk.ac.ic.doc.automed.util.graph.impl.Edge
 - To be accessed by HDMGraph only.
 - setSchemeDefinition(Object[]) - 
Method in class uk.ac.ic.doc.automed.util.graph.impl.HDMObject
 - To be accessed by HDMGraph only.
 - setSchemePos(Object, int) - 
Method in class uk.ac.ic.doc.automed.util.graph.impl.Edge
 -  
 - setSchemePos(Object, int) - 
Method in class uk.ac.ic.doc.automed.util.graph.impl.HDMObject
 -  
 - setSchemeSOBID(int, int, int) - 
Static method in class uk.ac.ic.doc.automed.STR
 - Sets the referenced schema object in a specific position of the scheme of a
 schema object.
 - setSchemeString(String) - 
Method in class uk.ac.bbk.dcs.automed.qproc.iql.SchemeInfo
 -  
 - setSchemeType(int) - 
Method in class uk.ac.ic.doc.automed.reps.ConstructScheme
 - Sets the scheme type of the 
ConstructScheme.
 - setSecondElement(SchemaElement) - 
Method in class uk.ac.ic.doc.automed.matching.SchemaElementPair
 -  
 - setSectionDebugLevel(int, int) - 
Static method in class uk.ac.ic.doc.automed.STR
 - Set the level of debug info output to the console for a numbered section of
 code.
 - setSectionDebugLevel(int, int) - 
Static method in class uk.ac.ic.doc.automed.util.Debugger
 - Set the level of debug info output to the console for a numbered
 section of code.
 - setSectionDebugLevel(String[]) - 
Static method in class uk.ac.ic.doc.automed.util.Debugger
 - From command-line arguments, find debug flag and set debug settings accordingly
 - setSelectedEdge(Edge) - 
Method in class uk.ac.ic.doc.automed.p2p.editor.KQueryAnalysisTool
 - Find a tree edge and shows its mappings on the mapping table
 - setSelectedMapping(Edge, ObjectMapping) - 
Method in class uk.ac.ic.doc.automed.p2p.editor.KQueryAnalysisTool
 - Select an object mapping on the mapping table
 - setSelectedObject(Object) - 
Method in class uk.ac.ic.doc.automed.p2p.gui.graph.GClipboard
 -  
 - setSelectedObject(Object) - 
Method in class uk.ac.ic.doc.automed.p2p.gui.HTMLObjectListViewer
 - Tick an object record on the highlighted object view
 - setSelectedObject(Object) - 
Method in interface uk.ac.ic.doc.automed.p2p.gui.ObjectList
 - Select the specified object
 - setSelectedPeers(Collection) - 
Method in class uk.ac.ic.doc.automed.p2p.editor.KQueryAnalysisTool
 -  
 - setSelectedSchema(Schema) - 
Method in class uk.ac.ic.doc.automed.p2p.qproc.planner.QueryPlannerResult
 -  
 - setSelectedSchemas(Collection) - 
Method in class uk.ac.ic.doc.automed.p2p.editor.KQueryAnalysisTool
 -  
 - setSelectedShape(GShape) - 
Method in class uk.ac.ic.doc.automed.p2p.gui.graph.DefaultGraphModel
 - Set the shape on which the user is working
 - setSelectedShape(GraphUI, GShape) - 
Method in class uk.ac.ic.doc.automed.p2p.gui.graph.GraphViz
 - Highlight a shape on the display given its id.
 - setSelectedShape(Object) - 
Method in class uk.ac.ic.doc.automed.p2p.gui.graph.GraphViz
 - Highlight a shape on the active display.
 - setSelectedWorkbenchTab(String) - 
Method in class uk.ac.ic.doc.automed.p2p.gui.graph.GraphViz
 -  
 - setSelectedWorkbenchTab(int) - 
Method in class uk.ac.ic.doc.automed.p2p.gui.graph.GraphViz
 -  
 - setSeparateErrors(boolean) - 
Method in class uk.ac.ic.doc.automed.xml.XMLReader
 -  
 - setServerAddress(String, String) - 
Method in class uk.ac.ic.doc.automed.p2p.AppToolKit.NodeConfig
 -  
 - setServerPort(String, String) - 
Method in class uk.ac.ic.doc.automed.p2p.AppToolKit.NodeConfig
 -  
 - setShapeProperty(GShape, String, String) - 
Method in class uk.ac.ic.doc.automed.p2p.gui.graph.GraphViz
 -  
 - setSID(int) - 
Method in class uk.ac.bbk.dcs.automed.xml.wrappers.XMLWrapper
 -  
 - setSilentFailure(boolean) - 
Method in class uk.ac.bbk.dcs.automed.qproc.QueryProcessorConfiguration
 - Set to true if you want any exception in query processing to result
 in an empty result (i.e.
 - setSimilarityDegree(double) - 
Method in class uk.ac.ic.doc.automed.matching.modules.bidirectionalmap.SimilarCluster
 -  
 - setSkolemOn(boolean) - 
Method in class uk.ac.bbk.dcs.automed.xml.sra.old.xmldssGraph.XMLDSSRestructurer
 -  
 - setSkolemOn(boolean) - 
Method in class uk.ac.bbk.dcs.automed.xml.sra.old.XMLRestructurer
 -  
 - setSmartQuoting(boolean) - 
Static method in class uk.ac.ic.doc.automed.reps.Syntax
 -  
 - setSocket(Socket) - 
Method in class uk.ac.ic.doc.automed.p2p.communication.AbstractDaemon.Worker
 -  
 - setSocket(Socket) - 
Method in class uk.ac.ic.doc.automed.p2p.communication.TCPServer.Worker
 -  
 - setSource(Object) - 
Method in class uk.ac.ic.doc.automed.p2p.gui.graph.events.GEvent
 -  
 - setSource(Node) - 
Method in class uk.ac.ic.doc.automed.util.graph.impl.Edge
 -  
 - setSourceObj(HDMObject) - 
Method in class uk.ac.ic.doc.automed.p2p.qproc.model.ObjectMapping
 -  
 - setSSDFormatName(int, String) - 
Static method in class uk.ac.ic.doc.automed.SSMDR
 - Sets the name of ssd format.
 - setSSDPattern(SSDPattern) - 
Method in class uk.ac.ic.doc.automed.ssd.SSDFormat
 -  
 - setSSMDR_DataSourceName(String) - 
Static method in class uk.ac.ic.doc.automed.SSMDR
 - Deprecated. use setDataSourceName()
 - setStandAlone(boolean) - 
Method in class uk.ac.ic.doc.automed.editor.Gui
 - Set stand-aloen
 - setState(int, boolean) - 
Method in class uk.ac.ic.doc.automed.p2p.gui.graph.CommonScreenHandler.InteractiveState
 -  
 - setStateDefaultVisited() - 
Method in class uk.ac.ic.doc.automed.wrappers.YattaWrapper.StateGraph
 -  
 - setStatus(String) - 
Method in class uk.ac.ic.doc.automed.p2p.protocol.model.PeerDescription
 -  
 - setStop(boolean) - 
Method in class uk.ac.ic.doc.automed.p2p.qproc.planner.QPlannerMain.Timer
 -  
 - setSTR_DataSourceName(String) - 
Static method in class uk.ac.ic.doc.automed.STR
 - Deprecated. use setDataSourceName()
 - setStrokeStyle(Graphics2D, float, String) - 
Method in class uk.ac.ic.doc.automed.p2p.gui.graph.GShape
 -  
 - setSubTitle(String) - 
Method in class uk.ac.ic.doc.automed.editor.Gui.EditorFrame
 -  
 - setSupressedTokenTypes(int[]) - 
Method in class uk.ac.ic.doc.automed.xml.XMLReader
 -  
 - setSupressIgnorableWhitespace(boolean) - 
Method in class uk.ac.ic.doc.automed.xml.XMLReader
 -  
 - setSyntaxChecking(boolean) - 
Method in class uk.ac.ic.doc.automed.reps.Transformation
 - Set if the syntax of transformations is checked as entered into the
 repository.
 - setSyntheticSwitch(boolean) - 
Method in class uk.ac.bbk.dcs.automed.xml.sra.old.xmldssGraph.XMLDSSRestructurer
 -  
 - setSyntheticSwitch(boolean) - 
Method in class uk.ac.bbk.dcs.automed.xml.sra.old.XMLRestructurer
 -  
 - setTableData(Object[], Object[][]) - 
Method in class uk.ac.ic.doc.automed.p2p.editor.ResultTableHelper
 - Change the table header and data
 - setTag(int) - 
Method in class uk.ac.bbk.dcs.automed.qproc.iql.Cell
 -  
 - setTag(int) - 
Method in class uk.ac.ic.doc.automed.util.graph.impl.Edge
 -  
 - setTag(int) - 
Method in class uk.ac.ic.doc.automed.util.graph.impl.Node
 -  
 - setTarget(Node) - 
Method in class uk.ac.ic.doc.automed.util.graph.impl.Edge
 -  
 - setTargetObj(HDMObject) - 
Method in class uk.ac.ic.doc.automed.p2p.qproc.model.ObjectMapping
 -  
 - setters - 
Static variable in class uk.ac.ic.doc.automed.DSR
 -  
 - setText(String) - 
Method in class uk.ac.ic.doc.automed.editor.DrawVertex
 - Set the text that will be used in this {link @Drawable}, and
 record its width and height.
 - setText(String) - 
Method in class uk.ac.ic.doc.automed.p2p.gui.TextConsole
 -  
 - setText(String) - 
Method in class uk.ac.ic.doc.automed.p2p.gui.TextFieldPopUp
 -  
 - setText(String, boolean) - 
Method in class uk.ac.ic.doc.automed.p2p.gui.TextFieldPopUp
 -  
 - setTextColor(Color) - 
Method in interface uk.ac.ic.doc.automed.editor.Positionable
 -  
 - setTextColor(Color) - 
Method in class uk.ac.ic.doc.automed.reps.Construct
 - Set the default text colour to be used from drawing
 
SchemaObjects of this Construct.
 - setTextColor(Color) - 
Method in class uk.ac.ic.doc.automed.reps.Model
 - Set the default text colour to be used from drawing
 
SchemaObjects of this Model.
 - setTextColor(Color) - 
Method in class uk.ac.ic.doc.automed.reps.Network
 -  
 - setTextColor(Color) - 
Method in class uk.ac.ic.doc.automed.reps.Schema
 -  
 - setTextColor(Color) - 
Method in class uk.ac.ic.doc.automed.reps.SchemaObject
 -  
 - setTextPos(int) - 
Method in class uk.ac.ic.doc.automed.p2p.gui.HTMLObjectListViewer
 -  
 - setThreadingLevel(int) - 
Method in class uk.ac.bbk.dcs.automed.qproc.QueryProcessorConfiguration
 -  
 - setThrowErrors(boolean) - 
Method in class uk.ac.ic.doc.automed.xml.XMLReader
 -  
 - setTitle(String) - 
Method in class uk.ac.ic.doc.automed.editor.Gui.EditorFrame
 -  
 - setTitle(String) - 
Method in class uk.ac.ic.doc.automed.p2p.gui.TablePanel
 -  
 - setTitle(String) - 
Method in class uk.ac.ic.doc.automed.p2p.wrappers.GoogleScholarWrapper.GSPubRec
 -  
 - setTitleAndObjects() - 
Method in class uk.ac.ic.doc.automed.p2p.gui.MainFrame
 -  
 - setTLPoint(double, double) - 
Method in class uk.ac.ic.doc.automed.p2p.gui.graph.GShape
 - The top-left point of the bounding box
 - setTLPoint(Point) - 
Method in class uk.ac.ic.doc.automed.p2p.gui.graph.GShape
 -  
 - setTotalColumns(int) - 
Method in class uk.ac.ic.doc.automed.xml.XMLWriter
 -  
 - setTranAction(int, int, String) - 
Static method in class uk.ac.ic.doc.automed.STR
 - Sets the action of a transformation between two schemas.
 - setTranConstraint(int, int, String) - 
Static method in class uk.ac.ic.doc.automed.STR
 - Sets the constraint of a transformation between two schemas.
 - setTranFromObject(int, int, int) - 
Static method in class uk.ac.ic.doc.automed.STR
 - Sets the object identifier (OBID) of the schema object to be transformed in
 a transformation
 - setTranFunction(int, int, String) - 
Static method in class uk.ac.ic.doc.automed.STR
 - Sets the function of a transformation between two schemas.
 - setTransformationProperty(int, int, String, String) - 
Static method in class uk.ac.ic.doc.automed.STR
 -  
 - setTransformModel(TransformModel) - 
Method in class uk.ac.ic.doc.automed.reps.Schema
 - If this schema has been transformed by the 
TransformModel class then store
 the result in the am field
 - setTranToObject(int, int, int) - 
Static method in class uk.ac.ic.doc.automed.STR
 - Sets the object identifier (OBID) of the schema object as a result of a
 transformation.
 - setTreatErrorsAsWarnings(boolean) - 
Method in class uk.ac.ic.doc.automed.reasoner.DIGReasonerPreferences
 - Specifies whether DIG Errors should be regarded as
 warnings
 - setType(String) - 
Method in class uk.ac.bbk.dcs.automed.qproc.iql.SchemeInfo
 -  
 - setType(String) - 
Method in class uk.ac.bbk.dcs.automed.xml.sra.old.xmldssGraph.XMLDSSGraphAttribute
 -  
 - setType(String) - 
Method in class uk.ac.ic.doc.automed.p2p.gui.graph.GShape
 -  
 - setType(int) - 
Method in class uk.ac.ic.doc.automed.p2p.qproc.reformulate.reformulators.QueryPlan
 -  
 - setType(int) - 
Method in class uk.ac.ic.doc.automed.reps.Schema
 - Set what type of 
Schema this is.
 - setType(String) - 
Method in class uk.ac.ic.doc.automed.wrappers.xsdomobject.XSDOMObject
 - Set the type for this object
 - setTypeCheckingState(boolean) - 
Method in class uk.ac.bbk.dcs.automed.qproc.QueryProcessorConfiguration
 - Set the optimisation state
 - setTypeId(int) - 
Method in class uk.ac.ic.doc.automed.reps.TypeHierarchy.TypeObject
 - Set the type id of this object
 - setUnion(Set, Set) - 
Static method in class uk.ac.ic.doc.automed.util.SetUtil
 -  
 - setup - 
Static variable in class uk.ac.ic.doc.automed.p2p.editor.TelnetTerminal
 -  
 - setUp(Graphics, GShape) - 
Method in class uk.ac.ic.doc.automed.p2p.gui.graph.GraphComponent
 - Set up the nodes and edges of this shape.
 - setUp(Graphics, GShape) - 
Method in class uk.ac.ic.doc.automed.p2p.gui.graph.SemiPolygonComponent
 - Set up the nodes and edges of this shape.
 - setUp(Graphics, GShape) - 
Method in class uk.ac.ic.doc.automed.p2p.gui.graph.SemiPolygonEclipseComponent
 - Set up the nodes and edges of this shape.
 - setUp() - 
Method in class uk.ac.ic.doc.automed.tests.p2p.qproc.commands.ExecuteGraphWithRangeCommandTest
 -  
 - setup(File, boolean) - 
Method in class uk.ac.ic.doc.automed.util.persist.PersistentDBController
 - Constructor to create a new db environment
 - setUpEERModel() - 
Method in class uk.ac.ic.doc.automed.modelmanagement.modelgen.HDMToEER
 - Set up the relational model, the constructs and the type hierarchy
 - setupElementHash() - 
Method in class uk.ac.ic.doc.automed.wrappers.XMLSchemaWrapper
 -  
 - setUpERModel() - 
Method in class uk.ac.ic.doc.automed.modelmanagement.modelgen.HDMToER
 - Set up the relational model, the constructs and the type hierarchy
 - setUpHighlightedShape(GShape) - 
Method in class uk.ac.ic.doc.automed.p2p.gui.graph.GShape
 - Set up a higlighted shape.
 - setUpper(int) - 
Method in class uk.ac.ic.doc.automed.reps.ConstructScheme
 - Sets the upper bound indicating the maximum occurence of the
 
ConstructScheme.
 - setUpperBoundScore(Object) - 
Method in class uk.ac.ic.doc.automed.p2p.util.topk.RecordStream
 - Update the upper-bound score of this input stream.
 - setUpRDFSModel() - 
Method in class uk.ac.ic.doc.automed.modelmanagement.modelgen.HDMToRDFS
 - Set up the RDFS model, the constructs and the type hierarchy
 - setUpRelationalModel() - 
Method in class uk.ac.ic.doc.automed.modelmanagement.modelgen.HDMToRelational
 - Set up the relational model, the constructs and the type hierarchy
 - setupSAXParser(String, String, String, int) - 
Method in class uk.ac.bbk.dcs.automed.xml.wrappers.SAXWrapper
 -  
 - setUpSQLModel() - 
Method in class uk.ac.ic.doc.automed.modelmanagement.modelgen.HDMToSQL
 - Set up the relational model, the constructs and the type hierarchy
 - setupStoreTables(ArrayList) - 
Method in class uk.ac.bbk.dcs.automed.hdmstore.HdmStore
 - Passed a set of tables that exist in the database
 create any missing ones
 - setupXMLModel() - 
Method in class uk.ac.ic.doc.automed.modelmanagement.modelgen.HDMToXMLSchema
 - Set up the XML Schema model
 - setURL(String) - 
Method in class uk.ac.ic.doc.automed.p2p.protocol.model.PeerDescription
 -  
 - setURL(String) - 
Method in class uk.ac.ic.doc.automed.reps.AccessMethod
 - Sets the URL of the database to which the access method connects.
 - setUserDataByEdge(Edge, Object) - 
Method in class uk.ac.ic.doc.automed.p2p.qproc.planner.QPlannerDataModel
 - Add data using the Edge object
 - setUsername(String) - 
Method in class uk.ac.ic.doc.automed.reps.AccessMethod
 - Sets the username used for connecting to the database.
 - setUserSelectedMapping(String, String, String, String, boolean) - 
Method in class uk.ac.ic.doc.automed.p2p.editor.KQueryAnalysisTool
 - register a selected mapping as the user operates on the mapping table.
 Also display this mapping on the graph GUI.
 - setUserSelectedMapping(Edge, Object, boolean) - 
Method in class uk.ac.ic.doc.automed.p2p.editor.KQueryAnalysisTool
 - Set a user-selected mapping based on ID
 - setUserSelectedMapping(Edge, ObjectMapping, boolean) - 
Method in class uk.ac.ic.doc.automed.p2p.editor.KQueryAnalysisTool
 -  
 - setUseSplitCDATA(boolean) - 
Method in class uk.ac.ic.doc.automed.xml.XMLWriter
 -  
 - setUSR(MassPotential) - 
Method in class it.unibo.cs.USI.tools.USRSchemaElementPair
 -  
 - setUSRs(UncertainSchemaElementPair[]) - 
Method in class uk.ac.ic.doc.automed.matching.modules.AbstractModule
 -  
 - SetUtil - Class in uk.ac.ic.doc.automed.util
 -  
 - SetUtil() - 
Constructor for class uk.ac.ic.doc.automed.util.SetUtil
 -  
 - setValid(boolean) - 
Method in class uk.ac.ic.doc.automed.editor.MatchingTool.MyTableModel.ValidatedRelationship
 -  
 - setValidating(boolean) - 
Method in class uk.ac.ic.doc.automed.xml.XMLReader
 -  
 - setValue(double) - 
Method in class it.unibo.cs.USI.tools.MappingValuePair
 -  
 - setValue(Object) - 
Method in interface uk.ac.ic.doc.automed.p2p.gui.PropertyObject
 -  
 - setValue(Object) - 
Method in class uk.ac.ic.doc.automed.p2p.gui.SimplePropertyObject
 -  
 - setValue(String) - 
Method in class uk.ac.ic.doc.automed.reps.SchemaObject
 - Sets the name/value of the schema object.
 - setValue(Object) - 
Method in class uk.ac.ic.doc.automed.util.Parameter
 -  
 - setValue(YattaWrapper.YattaNode) - 
Method in class uk.ac.ic.doc.automed.wrappers.YattaWrapper.StateGraphNode
 -  
 - setValue(String) - 
Method in class uk.ac.ic.doc.automed.wrappers.YattaWrapper.YattaNode
 -  
 - setValueAt(Object, int, int) - 
Method in class uk.ac.ic.doc.automed.editor.IDTool.MyTableModel
 -  
 - setValueAt(Object, int, int) - 
Method in class uk.ac.ic.doc.automed.editor.MatchingTool.MyTableModel
 -  
 - setValueAt(Object, int, int) - 
Method in class uk.ac.ic.doc.automed.editor.PatternWritingTool.MyTableModel
 -  
 - setValueAt(Object, int, int) - 
Method in class uk.ac.ic.doc.automed.p2p.gui.CacheViewerFrame.CacheTableModel
 - only implement to allow edition of table data
 - setValueAt(Object, int, int) - 
Method in class uk.ac.ic.doc.automed.p2p.gui.CacheViewerPanel.CacheTableModel
 - only implement to allow edition of table data
 - setValueAt(Object, int, int) - 
Method in class uk.ac.ic.doc.automed.p2p.gui.ObjectSetSelector.MyTableModel
 - invoked when a table value has been edited by user.
 - setValueBasedOptimisation(boolean) - 
Method in class uk.ac.bbk.dcs.automed.qproc.optimise.AbstractOptimisationProvider
 -  
 - setValueBasedOptimisation(boolean) - 
Method in class uk.ac.bbk.dcs.automed.qproc.optimise.Optimiser
 -  
 - setValueBasedOptimisation(boolean) - 
Method in interface uk.ac.ic.doc.automed.qproc.opti.QueryOptimisationProvider
 -  
 - setValueRange(ASG) - 
Method in class uk.ac.ic.doc.automed.wrappers.ResultSetMetadata
 -  
 - setValues(String) - 
Method in class uk.ac.ic.doc.automed.reps.RelationalOutputter.SQLColumn
 -  
 - setVertexDrawable(String) - 
Method in class uk.ac.ic.doc.automed.reps.Construct
 - Sets the name of the class used to draw the vertex of this
 
Construct in any diagram containing it.
 - setVisible(boolean) - 
Method in class uk.ac.ic.doc.automed.p2p.editor.ProgressConsole
 -  
 - setVisible(boolean, Component, int, int) - 
Method in class uk.ac.ic.doc.automed.p2p.gui.ComponentPopUp
 -  
 - setVisible(boolean) - 
Method in class uk.ac.ic.doc.automed.p2p.gui.InputDialog
 -  
 - setVisible(boolean) - 
Method in class uk.ac.ic.doc.automed.p2p.gui.PopUpContext
 -  
 - setVisibleOnHighlighted(boolean) - 
Method in class uk.ac.ic.doc.automed.p2p.gui.graph.GShape
 - This method is only applicable to composite shapes (e.g.
 - setVisit(boolean) - 
Method in class uk.ac.ic.doc.automed.wrappers.YattaWrapper.StateGraphNode
 -  
 - setVisited(boolean) - 
Method in class it.unibo.cs.USI.tools.TopKNode
 - When a node is visited, it is considered to be included in the
 top-K results.
 - setWidth(double) - 
Method in class uk.ac.ic.doc.automed.p2p.gui.graph.GTable.TableStruct
 -  
 - setWrapper(String) - 
Method in class uk.ac.ic.doc.automed.reps.AccessMethod
 - Sets the wrapper asscociated with this.
 - setXMLDSSExtractionMethod(int) - 
Method in class uk.ac.bbk.dcs.automed.xml.wrappers.XMLWrapperFactory
 -  
 - setXMLDSSSchema(Schema) - 
Method in class uk.ac.bbk.dcs.automed.xml.relational.XMLDSSFromRDB
 -  
 - setXMLVersion(String) - 
Method in class uk.ac.ic.doc.automed.xml.XMLWriter
 -  
 - setXPos(int) - 
Method in interface uk.ac.ic.doc.automed.editor.Positionable
 -  
 - setXPos(int) - 
Method in class uk.ac.ic.doc.automed.reps.Construct
 -  
 - setXPos(int) - 
Method in class uk.ac.ic.doc.automed.reps.Model
 -  
 - setXPos(int) - 
Method in class uk.ac.ic.doc.automed.reps.Network
 -  
 - setXPos(int) - 
Method in class uk.ac.ic.doc.automed.reps.Schema
 -  
 - setXPos(int) - 
Method in class uk.ac.ic.doc.automed.reps.SchemaObject
 -  
 - setYourAddress(String) - 
Method in class uk.ac.ic.doc.automed.p2p.messages.applicationlayer.HelloMsg
 - Set the actual peer's address after hello message was received
 - setYPos(int) - 
Method in interface uk.ac.ic.doc.automed.editor.Positionable
 -  
 - setYPos(int) - 
Method in class uk.ac.ic.doc.automed.reps.Construct
 -  
 - setYPos(int) - 
Method in class uk.ac.ic.doc.automed.reps.Model
 -  
 - setYPos(int) - 
Method in class uk.ac.ic.doc.automed.reps.Network
 -  
 - setYPos(int) - 
Method in class uk.ac.ic.doc.automed.reps.Schema
 -  
 - setYPos(int) - 
Method in class uk.ac.ic.doc.automed.reps.SchemaObject
 -  
 - sf - 
Variable in class uk.ac.ic.doc.automed.wrappers.YattaWrapper
 -  
 - sfb - 
Variable in class uk.ac.ic.doc.automed.p2p.qproc.commands.ViewEdgeMappingCommand
 -  
 - sfid - 
Variable in class uk.ac.ic.doc.automed.ssd.SSDFormat
 -  
 - sfidExistsInSSDFormat(int) - 
Static method in class uk.ac.ic.doc.automed.SSMDR
 - Checks if a particular ssdformat identifier (SFID) exists in the SSMDR.
 - sg - 
Static variable in class basic.BankDatabaseQuerying
 -  
 - sg - 
Static variable in class basic.UniversityDatabaseQuerying
 -  
 - sgns - 
Variable in class uk.ac.ic.doc.automed.editor.DefaultDrawLinkNodalVertex
 -  
 - shallowCopy(Map) - 
Static method in class uk.ac.ic.doc.automed.util.RuntimeParameters
 -  
 - shallowCopy(String[]) - 
Method in class uk.ac.ic.doc.automed.util.RuntimeParameters
 - Make a shallow copy of this except for some specified parameters
 - shandler - 
Variable in class uk.ac.ic.doc.automed.p2p.editor.KQueryMain
 -  
 - shandler - 
Variable in class uk.ac.ic.doc.automed.p2p.gui.ObjectBrowser
 -  
 - SHAPE_DESELECTED - 
Static variable in class uk.ac.ic.doc.automed.p2p.gui.graph.CommonScreenHandler.InteractiveState
 -  
 - SHAPE_DISTANCE_THRESHOLD - 
Static variable in class uk.ac.ic.doc.automed.p2p.gui.graph.GraphUI
 - Find the closest shape to a given point.
 - SHAPE_SELECTED - 
Static variable in class uk.ac.ic.doc.automed.p2p.gui.graph.CommonScreenHandler.InteractiveState
 -  
 - shapeClass - 
Variable in class uk.ac.ic.doc.automed.p2p.qproc.commands.ViewQueryMappingCommand
 -  
 - shapeContextMap - 
Variable in class uk.ac.ic.doc.automed.p2p.gui.graph.GraphUI
 -  
 - ShapeDescriptor - Class in uk.ac.ic.doc.automed.p2p.gui.graph.script
 -  
 - ShapeDescriptor(Class, String...) - 
Constructor for class uk.ac.ic.doc.automed.p2p.gui.graph.script.ShapeDescriptor
 - Create a new descriptor for a component with an array of (prop,val) pairs
 
Example usage:
 
 ShapeDescriptor comdesc = new ShapeDescriptor(GLine.class, "X", "10", "Y", "5", "BoundW", "50", "BoundH" , "20",
 
                                                "Label", "test line",
                                                "FillColor", "e6e6cb"
                                                "ForeColor", "000000"
                                                "StrokeColor", "e6e6cb");
 - shapeIndex - 
Variable in class uk.ac.ic.doc.automed.p2p.gui.graph.GraphUI
 -  
 - shapes - 
Variable in class uk.ac.ic.doc.automed.p2p.gui.graph.GScriptedShape
 -  
 - shiftDown - 
Variable in class uk.ac.ic.doc.automed.p2p.gui.graph.CommonScreenHandler
 -  
 - shiftNextMatch(JNode) - 
Method in class uk.ac.ic.doc.automed.p2p.util.topk.JStar
 - Shift the variable pointer to the next tuple in the stream which is to be
 processed
 - show() - 
Method in class uk.ac.ic.doc.automed.p2p.editor.TelnetClient
 -  
 - show() - 
Method in class uk.ac.ic.doc.automed.p2p.gui.graph.GraphViz
 -  
 - show - 
Variable in class uk.ac.ic.doc.automed.p2p.gui.ObjectBrowser
 -  
 - showAll - 
Variable in class uk.ac.ic.doc.automed.p2p.gui.MySchemasFrame
 -  
 - showAll() - 
Method in class uk.ac.ic.doc.automed.p2p.gui.MySchemasFrame
 -  
 - showAll() - 
Method in class uk.ac.ic.doc.automed.p2p.gui.SchemaInfoFrame
 -  
 - showAllSchemas() - 
Method in class uk.ac.ic.doc.automed.p2p.gui.PeerApplication
 -  
 - showAux() - 
Method in class uk.ac.ic.doc.automed.p2p.gui.ObjectBrowser
 - show the auxiliary view and all their nested views
 - showConfirm(Component, String, String, int) - 
Method in class uk.ac.ic.doc.automed.p2p.gui.graph.GraphViz
 -  
 - showConsole(String) - 
Method in class uk.ac.ic.doc.automed.p2p.editor.KQueryMain
 - Show a message on the output console
 - showConsole(char) - 
Method in class uk.ac.ic.doc.automed.p2p.editor.KQueryMain
 -  
 - showDataStructures() - 
Method in class uk.ac.bbk.dcs.automed.qproc.optimise.optimisers.CommonSubexpressionElimination
 -  
 - showError(String, String, Exception) - 
Method in class uk.ac.ic.doc.automed.p2p.editor.KQueryMain
 -  
 - showError(String, String) - 
Method in class uk.ac.ic.doc.automed.p2p.editor.KQueryMainHelper
 -  
 - showError(String, String, Throwable) - 
Method in class uk.ac.ic.doc.automed.p2p.gui.graph.GraphViz
 - Display error dialog
 - showErrorStatus(String) - 
Method in class uk.ac.ic.doc.automed.p2p.gui.graph.GraphViz
 - Display error on the status bar
 - showException(Exception) - 
Method in class uk.ac.ic.doc.automed.p2p.editor.KQueryMain
 -  
 - showExtent(Gui, Object[]) - 
Static method in class uk.ac.ic.doc.automed.editor.Gui
 - Displays the extent of a schema object
 - showExtentButton - 
Variable in class uk.ac.bbk.dcs.automed.dataWarehousing.dltInterface
 -  
 - ShowGraphModelCommand - Class in uk.ac.ic.doc.automed.p2p.gui.graph.commands
 -  
 - ShowGraphModelCommand(GraphViz) - 
Constructor for class uk.ac.ic.doc.automed.p2p.gui.graph.commands.ShowGraphModelCommand
 -  
 - showHashMap(Map) - 
Method in class uk.ac.bbk.dcs.automed.xml.sra.old.XMLRestructurer
 -  
 - showHashMap(Map, String, Logger) - 
Method in class uk.ac.bbk.dcs.automed.xml.sra.SRAInitialisation
 -  
 - showHashMap(String, HashMap) - 
Static method in class uk.ac.bbk.dcs.automed.xml.wrappers.XMLDSSFromXMLSchema
 -  
 - showHighlightedContext(GraphUI, Component) - 
Method in class uk.ac.ic.doc.automed.p2p.gui.graph.GraphViz
 -  
 - showInfo(String, String) - 
Method in class uk.ac.ic.doc.automed.p2p.editor.KQueryMainHelper
 -  
 - showInfo(String, String) - 
Method in class uk.ac.ic.doc.automed.p2p.gui.graph.GraphViz
 -  
 - showInstanceCache() - 
Static method in class uk.ac.bbk.dcs.automed.qproc.reformulate.AtomicViewMap
 -  
 - showInstanceCache() - 
Static method in class uk.ac.bbk.dcs.automed.qproc.reformulate.CompositeViewMap
 -  
 - showMap(Map) - 
Method in class uk.ac.bbk.dcs.automed.qproc.optimise.optimisers.CommonSubexpressionElimination
 -  
 - showMenuItems(Point, GShape, JMenuItem[]) - 
Method in class uk.ac.ic.doc.automed.p2p.gui.graph.GPopUpMenu
 -  
 - showMessage(String) - 
Method in class uk.ac.ic.doc.automed.p2p.qproc.commands.TopKMappingCommand
 -  
 - showMessage(String, Exception) - 
Method in class uk.ac.ic.doc.automed.p2p.qproc.commands.TopKMappingCommand
 -  
 - showNLMIMap(Map) - 
Method in class uk.ac.bbk.dcs.automed.xml.sra.old.XMLRestructurer
 -  
 - showPeerLocations(GraphViz, String, GShape) - 
Static method in class uk.ac.ic.doc.automed.p2p.gui.GuiToolKit
 - Search all the mappings that contain a specific schema object and display
 those peers
 - showPoint(Point) - 
Static method in class uk.ac.ic.doc.automed.editor.autolayout.AutoLayout
 -  
 - showRelated(Object, Map) - 
Method in class uk.ac.ic.doc.automed.p2p.gui.ObjectBrowser
 - Show the collections of related objects to a given object
 - showSchema(Schema) - 
Method in class uk.ac.ic.doc.automed.p2p.editor.KQueryMain
 - Display the HDM schema structure on the schema UI
 - showSchema(SchemaDescription) - 
Method in class uk.ac.ic.doc.automed.p2p.gui.PeerApplication
 -  
 - showSchemaInfo() - 
Method in class uk.ac.ic.doc.automed.p2p.gui.AllSchemasFrame
 -  
 - showSchemaInfo() - 
Method in class uk.ac.ic.doc.automed.p2p.gui.MySchemasFrame
 -  
 - showSchemaInfo() - 
Method in class uk.ac.ic.doc.automed.p2p.gui.SchemaInfoFrame
 -  
 - showSet(Set, String) - 
Method in class uk.ac.bbk.dcs.automed.xml.sra.SRAPhase1
 -  
 - showSet1(Set) - 
Method in class uk.ac.bbk.dcs.automed.xml.sra.old.XMLRestructurer
 -  
 - showSetContents(String, Set) - 
Static method in class uk.ac.ic.doc.automed.tml.PathwayOptimiser
 -  
 - showShape(GShape, boolean) - 
Method in class uk.ac.ic.doc.automed.p2p.gui.graph.GraphUI
 - Display a shape
 - showShape(Object) - 
Method in class uk.ac.ic.doc.automed.p2p.gui.graph.GraphViz
 - Show a shape given the object that it represents
 - showSRANLMIHashMap(Map, String, Logger) - 
Method in class uk.ac.bbk.dcs.automed.xml.sra.SRAInitialisation
 -  
 - showStatus(String, String) - 
Method in class uk.ac.ic.doc.automed.p2p.gui.graph.GraphViz
 -  
 - showStatus(QueryPlannerResult) - 
Method in class uk.ac.ic.doc.automed.p2p.qproc.commands.TopKMappingCommand
 - Show the status of the query planner result.
 - showStep() - 
Method in class uk.ac.bbk.dcs.automed.dataWarehousing.dlt.TransfStep
 -  
 - showSyntheticStuffMap(Map) - 
Method in class uk.ac.bbk.dcs.automed.xml.sra.old.XMLRestructurer
 -  
 - showSyntheticStuffMap(Map, String) - 
Method in class uk.ac.bbk.dcs.automed.xml.sra.SRAPhase1
 -  
 - showTask(Vector, Vector) - 
Method in class uk.ac.ic.doc.automed.p2p.editor.KQueryMain
 - Display properties about a given task.
 Each property is an instance of the PropertyObject
 - showTimeStatistics(long, long, double) - 
Method in class uk.ac.ic.doc.automed.p2p.editor.KQueryMain
 -  
 - showTree() - 
Method in class uk.ac.ic.doc.automed.editor.autolayout.AutoLayoutTreeObject
 - Same as setFinalPosition() but set position on all object in tree.
 - showVarMap(Map) - 
Static method in class uk.ac.bbk.dcs.automed.qproc.reformulate.InverseRulesAlgorithm
 - Print the $const variable map
 - showViewMap() - 
Method in class uk.ac.bbk.dcs.automed.qproc.reformulate.AtomicViewMap
 -  
 - showViewMap() - 
Method in class uk.ac.bbk.dcs.automed.qproc.reformulate.CacheQueryReformulationProvider
 -  
 - showViewMap() - 
Method in class uk.ac.bbk.dcs.automed.qproc.reformulate.CompositeViewMap
 -  
 - showViewMap() - 
Method in class uk.ac.bbk.dcs.automed.qproc.reformulate.GAVQueryReformulationProvider
 -  
 - showViewMap(Map) - 
Static method in class uk.ac.bbk.dcs.automed.qproc.reformulate.InverseRulesAlgorithm
 - Print the view map to logger or stdio.
 - showViewMap() - 
Method in class uk.ac.bbk.dcs.automed.qproc.reformulate.NewerGAVQueryReformulationProvider
 -  
 - showViewMap() - 
Method in class uk.ac.bbk.dcs.automed.qproc.reformulate.NewGAVQueryReformulationProvider
 -  
 - shrinkingPhase(Schema, boolean, boolean, String) - 
Method in class uk.ac.bbk.dcs.automed.owl.TranslateRelationalSchemaToOWLLite
 -  
 - shrinkingPhase(Pathway, Pathway) - 
Method in class uk.ac.ic.doc.automed.modelmanagement.operators.Compose
 -  
 - shrinkingPhase(Schema, Schema, Transformation) - 
Method in class uk.ac.ic.doc.automed.modelmanagement.operators.Extract
 -  
 - shrinkingPhase(Schema, Schema, Transformation) - 
Method in class uk.ac.ic.doc.automed.modelmanagement.operators.GrowDiff
 -  
 - shrinkmapping - 
Variable in class uk.ac.ic.doc.automed.modelmanagement.mapping.MappingTranslate
 -  
 - shrinkQuals - 
Variable in class uk.ac.ic.doc.automed.modelmanagement.operators.Extract
 -  
 - shrinkQueries - 
Variable in class uk.ac.ic.doc.automed.modelmanagement.operators.Extract
 -  
 - shrinkQueries - 
Variable in class uk.ac.ic.doc.automed.modelmanagement.operators.GrowDiff
 -  
 - shrinkRewrite(Schema, String, String) - 
Method in class uk.ac.ic.doc.automed.modelmanagement.operators.Operator
 -  
 - shutdown() - 
Static method in class uk.ac.ic.doc.automed.DSR
 - Tear down all connections and shutdown embedded databases.
 - shutdown() - 
Method in class uk.ac.ic.doc.automed.p2p.AutoMedPeer
 - Shutdown peer, clear resources etc.
 - shutdown() - 
Method in class uk.ac.ic.doc.automed.p2p.directory.P2PDirectoryRepository
 - Close connections and shutdown any open embedded dbs
 - shutdown() - 
Method in class uk.ac.ic.doc.automed.p2p.P2PNetworkFactory
 -  
 - shutdown() - 
Method in class uk.ac.ic.doc.automed.p2p.son.PGridApp
 -  
 - shutdown() - 
Method in interface uk.ac.ic.doc.automed.p2p.son.SMRController
 -  
 - shutdown() - 
Method in class uk.ac.ic.doc.automed.p2p.son.SMRControllerChord
 -  
 - shutdown() - 
Method in class uk.ac.ic.doc.automed.p2p.son.SMRControllerPGrid
 -  
 - shutdown() - 
Method in class uk.ac.ic.doc.automed.util.db.DBAccess
 - Shutdown in-process database, closes current connection to it
 - shutdown() - 
Method in class uk.ac.ic.doc.automed.util.db.DBEmbedded
 - Shutdown in-process database, closes current connection to it and remove
 
DBEmbedded object from the cache of data sources
 - shutdown() - 
Method in class uk.ac.ic.doc.automed.util.thread.ConcurrencyController
 - Execute submitted tasks but accept no further tasks.
 - shutDownSMRProtocol() - 
Method in class uk.ac.ic.doc.automed.p2p.Peer
 -  
 - si - 
Variable in class uk.ac.ic.doc.automed.util.graph.impl.HDMObject
 -  
 - sibling - 
Variable in class uk.ac.ic.doc.automed.editor.autolayout.AutoLayoutTreeObject
 -  
 - SICP - Class in uk.ac.ic.doc.automed.p2p.protocol
 - SICP.java
 
 
 Schema Information Control Protocol: provides standard interface functions
 for publishing/obtaining information regarding resources on the P2P network. - SICP(AutoMedPeer) - 
Constructor for class uk.ac.ic.doc.automed.p2p.protocol.SICP
 - Creates a new instance of SICP
 - sid - 
Variable in class uk.ac.bbk.dcs.automed.xml.wrappers.XMLWrapper
 -  
 - sid - 
Variable in class uk.ac.ic.doc.automed.ObjectRow
 -  
 - sid - 
Variable in class uk.ac.ic.doc.automed.reps.Schema
 -  
 - sid - 
Variable in class uk.ac.ic.doc.automed.SchemaObjectPropertyRow
 -  
 - sid - 
Variable in class uk.ac.ic.doc.automed.SchemaPropertyRow
 -  
 - sid - 
Variable in class uk.ac.ic.doc.automed.SchemaRow
 -  
 - side - 
Variable in class uk.ac.ic.doc.automed.p2p.gui.graph.PolygonComponent
 -  
 - sidExistsInSchema(int) - 
Static method in class uk.ac.ic.doc.automed.STR
 - Checks if a particular schema identifier (SID) exists in the STR.
 - sidModel - 
Variable in class uk.ac.ic.doc.automed.editor.IDTool
 -  
 - sidTable - 
Variable in class uk.ac.ic.doc.automed.editor.IDTool
 -  
 - sign(int) - 
Static method in class uk.ac.ic.doc.automed.editor.autolayout.AutoLayoutERObject
 -  
 - SimilarCluster - Class in uk.ac.ic.doc.automed.matching.modules.bidirectionalmap
 -  
 - SimilarCluster(Cluster, double) - 
Constructor for class uk.ac.ic.doc.automed.matching.modules.bidirectionalmap.SimilarCluster
 -  
 - SimilarSchemaElementPair - Class in uk.ac.ic.doc.automed.matching
 - The class representing a pair of schema elements and its bidirectional similarity degrees.
 - SimilarSchemaElementPair(SchemaElement, SchemaElement, BidirectionalDegree) - 
Constructor for class uk.ac.ic.doc.automed.matching.SimilarSchemaElementPair
 - Constructs a 
SimilarSchemaElementPair object.
 - SimilarSchemaElementPair(SchemaElementPair, BidirectionalDegree) - 
Constructor for class uk.ac.ic.doc.automed.matching.SimilarSchemaElementPair
 - Constructs a 
SimilarSchemaElementPair object.
 - SimpleCharStream - Class in uk.ac.bbk.dcs.automed.qproc.annotate.grammars.schemes
 - An implementation of interface CharStream, where the stream is assumed to
 contain only ASCII characters (without unicode processing).
 - SimpleCharStream(Reader, int, int, int) - 
Constructor for class uk.ac.bbk.dcs.automed.qproc.annotate.grammars.schemes.SimpleCharStream
 -  
 - SimpleCharStream(Reader, int, int) - 
Constructor for class uk.ac.bbk.dcs.automed.qproc.annotate.grammars.schemes.SimpleCharStream
 -  
 - SimpleCharStream(Reader) - 
Constructor for class uk.ac.bbk.dcs.automed.qproc.annotate.grammars.schemes.SimpleCharStream
 -  
 - SimpleCharStream(InputStream, int, int, int) - 
Constructor for class uk.ac.bbk.dcs.automed.qproc.annotate.grammars.schemes.SimpleCharStream
 -  
 - SimpleCharStream(InputStream, int, int) - 
Constructor for class uk.ac.bbk.dcs.automed.qproc.annotate.grammars.schemes.SimpleCharStream
 -  
 - SimpleCharStream(InputStream) - 
Constructor for class uk.ac.bbk.dcs.automed.qproc.annotate.grammars.schemes.SimpleCharStream
 -  
 - SimpleCharStream - Class in uk.ac.bbk.dcs.automed.qproc.annotate.grammars.simpleComp
 - An implementation of interface CharStream, where the stream is assumed to
 contain only ASCII characters (without unicode processing).
 - SimpleCharStream(Reader, int, int, int) - 
Constructor for class uk.ac.bbk.dcs.automed.qproc.annotate.grammars.simpleComp.SimpleCharStream
 -  
 - SimpleCharStream(Reader, int, int) - 
Constructor for class uk.ac.bbk.dcs.automed.qproc.annotate.grammars.simpleComp.SimpleCharStream
 -  
 - SimpleCharStream(Reader) - 
Constructor for class uk.ac.bbk.dcs.automed.qproc.annotate.grammars.simpleComp.SimpleCharStream
 -  
 - SimpleCharStream(InputStream, int, int, int) - 
Constructor for class uk.ac.bbk.dcs.automed.qproc.annotate.grammars.simpleComp.SimpleCharStream
 -  
 - SimpleCharStream(InputStream, int, int) - 
Constructor for class uk.ac.bbk.dcs.automed.qproc.annotate.grammars.simpleComp.SimpleCharStream
 -  
 - SimpleCharStream(InputStream) - 
Constructor for class uk.ac.bbk.dcs.automed.qproc.annotate.grammars.simpleComp.SimpleCharStream
 -  
 - SimpleCharStream - Class in uk.ac.bbk.dcs.automed.qproc.annotate.grammars.simpleCompAppend
 - An implementation of interface CharStream, where the stream is assumed to
 contain only ASCII characters (without unicode processing).
 - SimpleCharStream(Reader, int, int, int) - 
Constructor for class uk.ac.bbk.dcs.automed.qproc.annotate.grammars.simpleCompAppend.SimpleCharStream
 -  
 - SimpleCharStream(Reader, int, int) - 
Constructor for class uk.ac.bbk.dcs.automed.qproc.annotate.grammars.simpleCompAppend.SimpleCharStream
 -  
 - SimpleCharStream(Reader) - 
Constructor for class uk.ac.bbk.dcs.automed.qproc.annotate.grammars.simpleCompAppend.SimpleCharStream
 -  
 - SimpleCharStream(InputStream, int, int, int) - 
Constructor for class uk.ac.bbk.dcs.automed.qproc.annotate.grammars.simpleCompAppend.SimpleCharStream
 -  
 - SimpleCharStream(InputStream, int, int) - 
Constructor for class uk.ac.bbk.dcs.automed.qproc.annotate.grammars.simpleCompAppend.SimpleCharStream
 -  
 - SimpleCharStream(InputStream) - 
Constructor for class uk.ac.bbk.dcs.automed.qproc.annotate.grammars.simpleCompAppend.SimpleCharStream
 -  
 - SimpleCharStream - Class in uk.ac.bbk.dcs.automed.qproc.annotate.grammars.simpleCompAppendMonus
 - An implementation of interface CharStream, where the stream is assumed to
 contain only ASCII characters (without unicode processing).
 - SimpleCharStream(Reader, int, int, int) - 
Constructor for class uk.ac.bbk.dcs.automed.qproc.annotate.grammars.simpleCompAppendMonus.SimpleCharStream
 -  
 - SimpleCharStream(Reader, int, int) - 
Constructor for class uk.ac.bbk.dcs.automed.qproc.annotate.grammars.simpleCompAppendMonus.SimpleCharStream
 -  
 - SimpleCharStream(Reader) - 
Constructor for class uk.ac.bbk.dcs.automed.qproc.annotate.grammars.simpleCompAppendMonus.SimpleCharStream
 -  
 - SimpleCharStream(InputStream, int, int, int) - 
Constructor for class uk.ac.bbk.dcs.automed.qproc.annotate.grammars.simpleCompAppendMonus.SimpleCharStream
 -  
 - SimpleCharStream(InputStream, int, int) - 
Constructor for class uk.ac.bbk.dcs.automed.qproc.annotate.grammars.simpleCompAppendMonus.SimpleCharStream
 -  
 - SimpleCharStream(InputStream) - 
Constructor for class uk.ac.bbk.dcs.automed.qproc.annotate.grammars.simpleCompAppendMonus.SimpleCharStream
 -  
 - SimpleCharStream - Class in uk.ac.bbk.dcs.automed.qproc.annotate.grammars.simpleCompMember
 - An implementation of interface CharStream, where the stream is assumed to
 contain only ASCII characters (without unicode processing).
 - SimpleCharStream(Reader, int, int, int) - 
Constructor for class uk.ac.bbk.dcs.automed.qproc.annotate.grammars.simpleCompMember.SimpleCharStream
 -  
 - SimpleCharStream(Reader, int, int) - 
Constructor for class uk.ac.bbk.dcs.automed.qproc.annotate.grammars.simpleCompMember.SimpleCharStream
 -  
 - SimpleCharStream(Reader) - 
Constructor for class uk.ac.bbk.dcs.automed.qproc.annotate.grammars.simpleCompMember.SimpleCharStream
 -  
 - SimpleCharStream(InputStream, int, int, int) - 
Constructor for class uk.ac.bbk.dcs.automed.qproc.annotate.grammars.simpleCompMember.SimpleCharStream
 -  
 - SimpleCharStream(InputStream, int, int) - 
Constructor for class uk.ac.bbk.dcs.automed.qproc.annotate.grammars.simpleCompMember.SimpleCharStream
 -  
 - SimpleCharStream(InputStream) - 
Constructor for class uk.ac.bbk.dcs.automed.qproc.annotate.grammars.simpleCompMember.SimpleCharStream
 -  
 - SimpleCharStream - Class in uk.ac.bbk.dcs.automed.qproc.annotate.grammars.sql
 - An implementation of interface CharStream, where the stream is assumed to
 contain only ASCII characters (without unicode processing).
 - SimpleCharStream(Reader, int, int, int) - 
Constructor for class uk.ac.bbk.dcs.automed.qproc.annotate.grammars.sql.SimpleCharStream
 -  
 - SimpleCharStream(Reader, int, int) - 
Constructor for class uk.ac.bbk.dcs.automed.qproc.annotate.grammars.sql.SimpleCharStream
 -  
 - SimpleCharStream(Reader) - 
Constructor for class uk.ac.bbk.dcs.automed.qproc.annotate.grammars.sql.SimpleCharStream
 -  
 - SimpleCharStream(InputStream, int, int, int) - 
Constructor for class uk.ac.bbk.dcs.automed.qproc.annotate.grammars.sql.SimpleCharStream
 -  
 - SimpleCharStream(InputStream, int, int) - 
Constructor for class uk.ac.bbk.dcs.automed.qproc.annotate.grammars.sql.SimpleCharStream
 -  
 - SimpleCharStream(InputStream) - 
Constructor for class uk.ac.bbk.dcs.automed.qproc.annotate.grammars.sql.SimpleCharStream
 -  
 - SimpleCharStream - Class in uk.ac.bbk.dcs.automed.qproc.translators.sql
 - An implementation of interface CharStream, where the stream is assumed to
 contain only ASCII characters (without unicode processing).
 - SimpleCharStream(Reader, int, int, int) - 
Constructor for class uk.ac.bbk.dcs.automed.qproc.translators.sql.SimpleCharStream
 -  
 - SimpleCharStream(Reader, int, int) - 
Constructor for class uk.ac.bbk.dcs.automed.qproc.translators.sql.SimpleCharStream
 -  
 - SimpleCharStream(Reader) - 
Constructor for class uk.ac.bbk.dcs.automed.qproc.translators.sql.SimpleCharStream
 -  
 - SimpleCharStream(InputStream, int, int, int) - 
Constructor for class uk.ac.bbk.dcs.automed.qproc.translators.sql.SimpleCharStream
 -  
 - SimpleCharStream(InputStream, int, int) - 
Constructor for class uk.ac.bbk.dcs.automed.qproc.translators.sql.SimpleCharStream
 -  
 - SimpleCharStream(InputStream) - 
Constructor for class uk.ac.bbk.dcs.automed.qproc.translators.sql.SimpleCharStream
 -  
 - SimpleCharStream - Class in uk.ac.bbk.dcs.automed.qproc.translators.xquery
 - An implementation of interface CharStream, where the stream is assumed to
 contain only ASCII characters (without unicode processing).
 - SimpleCharStream(Reader, int, int, int) - 
Constructor for class uk.ac.bbk.dcs.automed.qproc.translators.xquery.SimpleCharStream
 -  
 - SimpleCharStream(Reader, int, int) - 
Constructor for class uk.ac.bbk.dcs.automed.qproc.translators.xquery.SimpleCharStream
 -  
 - SimpleCharStream(Reader) - 
Constructor for class uk.ac.bbk.dcs.automed.qproc.translators.xquery.SimpleCharStream
 -  
 - SimpleCharStream(InputStream, int, int, int) - 
Constructor for class uk.ac.bbk.dcs.automed.qproc.translators.xquery.SimpleCharStream
 -  
 - SimpleCharStream(InputStream, int, int) - 
Constructor for class uk.ac.bbk.dcs.automed.qproc.translators.xquery.SimpleCharStream
 -  
 - SimpleCharStream(InputStream) - 
Constructor for class uk.ac.bbk.dcs.automed.qproc.translators.xquery.SimpleCharStream
 -  
 - SimpleComp - Class in uk.ac.bbk.dcs.automed.qproc.annotate.grammars.simpleComp
 -  
 - SimpleComp(InputStream) - 
Constructor for class uk.ac.bbk.dcs.automed.qproc.annotate.grammars.simpleComp.SimpleComp
 -  
 - SimpleComp(Reader) - 
Constructor for class uk.ac.bbk.dcs.automed.qproc.annotate.grammars.simpleComp.SimpleComp
 -  
 - SimpleComp(SimpleCompTokenManager) - 
Constructor for class uk.ac.bbk.dcs.automed.qproc.annotate.grammars.simpleComp.SimpleComp
 -  
 - SimpleCompAppend - Class in uk.ac.bbk.dcs.automed.qproc.annotate.grammars.simpleCompAppend
 -  
 - SimpleCompAppend(InputStream) - 
Constructor for class uk.ac.bbk.dcs.automed.qproc.annotate.grammars.simpleCompAppend.SimpleCompAppend
 -  
 - SimpleCompAppend(Reader) - 
Constructor for class uk.ac.bbk.dcs.automed.qproc.annotate.grammars.simpleCompAppend.SimpleCompAppend
 -  
 - SimpleCompAppend(SimpleCompAppendTokenManager) - 
Constructor for class uk.ac.bbk.dcs.automed.qproc.annotate.grammars.simpleCompAppend.SimpleCompAppend
 -  
 - SimpleCompAppendConstants - Interface in uk.ac.bbk.dcs.automed.qproc.annotate.grammars.simpleCompAppend
 -  
 - SimpleCompAppendMonus - Class in uk.ac.bbk.dcs.automed.qproc.annotate.grammars.simpleCompAppendMonus
 -  
 - SimpleCompAppendMonus(InputStream) - 
Constructor for class uk.ac.bbk.dcs.automed.qproc.annotate.grammars.simpleCompAppendMonus.SimpleCompAppendMonus
 -  
 - SimpleCompAppendMonus(Reader) - 
Constructor for class uk.ac.bbk.dcs.automed.qproc.annotate.grammars.simpleCompAppendMonus.SimpleCompAppendMonus
 -  
 - SimpleCompAppendMonus(SimpleCompAppendMonusTokenManager) - 
Constructor for class uk.ac.bbk.dcs.automed.qproc.annotate.grammars.simpleCompAppendMonus.SimpleCompAppendMonus
 -  
 - SimpleCompAppendMonusConstants - Interface in uk.ac.bbk.dcs.automed.qproc.annotate.grammars.simpleCompAppendMonus
 -  
 - SimpleCompAppendMonusTokenManager - Class in uk.ac.bbk.dcs.automed.qproc.annotate.grammars.simpleCompAppendMonus
 -  
 - SimpleCompAppendMonusTokenManager(SimpleCharStream) - 
Constructor for class uk.ac.bbk.dcs.automed.qproc.annotate.grammars.simpleCompAppendMonus.SimpleCompAppendMonusTokenManager
 -  
 - SimpleCompAppendMonusTokenManager(SimpleCharStream, int) - 
Constructor for class uk.ac.bbk.dcs.automed.qproc.annotate.grammars.simpleCompAppendMonus.SimpleCompAppendMonusTokenManager
 -  
 - SimpleCompAppendTokenManager - Class in uk.ac.bbk.dcs.automed.qproc.annotate.grammars.simpleCompAppend
 -  
 - SimpleCompAppendTokenManager(SimpleCharStream) - 
Constructor for class uk.ac.bbk.dcs.automed.qproc.annotate.grammars.simpleCompAppend.SimpleCompAppendTokenManager
 -  
 - SimpleCompAppendTokenManager(SimpleCharStream, int) - 
Constructor for class uk.ac.bbk.dcs.automed.qproc.annotate.grammars.simpleCompAppend.SimpleCompAppendTokenManager
 -  
 - SimpleCompConstants - Interface in uk.ac.bbk.dcs.automed.qproc.annotate.grammars.simpleComp
 -  
 - SimpleCompMember - Class in uk.ac.bbk.dcs.automed.qproc.annotate.grammars.simpleCompMember
 -  
 - SimpleCompMember(InputStream) - 
Constructor for class uk.ac.bbk.dcs.automed.qproc.annotate.grammars.simpleCompMember.SimpleCompMember
 -  
 - SimpleCompMember(Reader) - 
Constructor for class uk.ac.bbk.dcs.automed.qproc.annotate.grammars.simpleCompMember.SimpleCompMember
 -  
 - SimpleCompMember(SimpleCompMemberTokenManager) - 
Constructor for class uk.ac.bbk.dcs.automed.qproc.annotate.grammars.simpleCompMember.SimpleCompMember
 -  
 - SimpleCompMemberConstants - Interface in uk.ac.bbk.dcs.automed.qproc.annotate.grammars.simpleCompMember
 -  
 - SimpleCompMemberTokenManager - Class in uk.ac.bbk.dcs.automed.qproc.annotate.grammars.simpleCompMember
 -  
 - SimpleCompMemberTokenManager(SimpleCharStream) - 
Constructor for class uk.ac.bbk.dcs.automed.qproc.annotate.grammars.simpleCompMember.SimpleCompMemberTokenManager
 -  
 - SimpleCompMemberTokenManager(SimpleCharStream, int) - 
Constructor for class uk.ac.bbk.dcs.automed.qproc.annotate.grammars.simpleCompMember.SimpleCompMemberTokenManager
 -  
 - simpleComprehension() - 
Method in class uk.ac.bbk.dcs.automed.qproc.annotate.grammars.simpleComp.SimpleComp
 -  
 - simpleComprehension() - 
Method in class uk.ac.bbk.dcs.automed.qproc.annotate.grammars.simpleCompAppend.SimpleCompAppend
 -  
 - simpleComprehension() - 
Method in class uk.ac.bbk.dcs.automed.qproc.annotate.grammars.simpleCompAppendMonus.SimpleCompAppendMonus
 -  
 - simpleComprehension() - 
Method in class uk.ac.bbk.dcs.automed.qproc.annotate.grammars.simpleCompMember.SimpleCompMember
 -  
 - SimpleCompTokenManager - Class in uk.ac.bbk.dcs.automed.qproc.annotate.grammars.simpleComp
 -  
 - SimpleCompTokenManager(SimpleCharStream) - 
Constructor for class uk.ac.bbk.dcs.automed.qproc.annotate.grammars.simpleComp.SimpleCompTokenManager
 -  
 - SimpleCompTokenManager(SimpleCharStream, int) - 
Constructor for class uk.ac.bbk.dcs.automed.qproc.annotate.grammars.simpleComp.SimpleCompTokenManager
 -  
 - simpleElement - 
Variable in class uk.ac.ic.doc.automed.modelmanagement.modeldef.XMLSchemaModelDef
 -  
 - simpleElement - 
Variable in class uk.ac.ic.doc.automed.modelmanagement.modelgen.HDMToXMLSchema
 -  
 - simpleElement - 
Variable in class uk.ac.ic.doc.automed.wrappers.XMLSchemaWrapperFactory
 -  
 - simpleElement - 
Variable in class uk.ac.ic.doc.automed.wrappers.xsdomobject.AutoMedToXSDOM
 -  
 - simpleElement - 
Variable in class uk.ac.ic.doc.automed.xmlschema.output.XMLOutputter
 -  
 - simpleFilter() - 
Method in class uk.ac.bbk.dcs.automed.qproc.annotate.grammars.simpleComp.SimpleComp
 -  
 - simpleFilter() - 
Method in class uk.ac.bbk.dcs.automed.qproc.annotate.grammars.simpleCompAppend.SimpleCompAppend
 -  
 - simpleFilter() - 
Method in class uk.ac.bbk.dcs.automed.qproc.annotate.grammars.simpleCompAppendMonus.SimpleCompAppendMonus
 -  
 - simpleFilter() - 
Method in class uk.ac.bbk.dcs.automed.qproc.annotate.grammars.simpleCompMember.SimpleCompMember
 -  
 - simpleFusion(Cell, HashMap) - 
Method in class uk.ac.bbk.dcs.automed.qproc.optimise.optimisers.RelationSKJEliminator
 - Argument is the root of a comprehension containing 1 qualifier exactly.
 - simpleGenerator() - 
Method in class uk.ac.bbk.dcs.automed.qproc.annotate.grammars.simpleComp.SimpleComp
 -  
 - simpleGenerator() - 
Method in class uk.ac.bbk.dcs.automed.qproc.annotate.grammars.simpleCompAppend.SimpleCompAppend
 -  
 - simpleGenerator() - 
Method in class uk.ac.bbk.dcs.automed.qproc.annotate.grammars.simpleCompAppendMonus.SimpleCompAppendMonus
 -  
 - simpleGenerator() - 
Method in class uk.ac.bbk.dcs.automed.qproc.annotate.grammars.simpleCompMember.SimpleCompMember
 -  
 - SimpleGraphComponent - Class in uk.ac.ic.doc.automed.p2p.gui.graph
 - A graph component that does not actually have a drawing method.
 - SimpleGraphComponent(String, Point, Dimension, Properties) - 
Constructor for class uk.ac.ic.doc.automed.p2p.gui.graph.SimpleGraphComponent
 -  
 - simpleList() - 
Method in class uk.ac.bbk.dcs.automed.qproc.annotate.grammars.simpleComp.SimpleComp
 -  
 - simpleList() - 
Method in class uk.ac.bbk.dcs.automed.qproc.annotate.grammars.simpleCompAppend.SimpleCompAppend
 -  
 - simpleList() - 
Method in class uk.ac.bbk.dcs.automed.qproc.annotate.grammars.simpleCompAppendMonus.SimpleCompAppendMonus
 -  
 - simpleList() - 
Method in class uk.ac.bbk.dcs.automed.qproc.annotate.grammars.simpleCompMember.SimpleCompMember
 -  
 - simpleListTokens() - 
Method in class uk.ac.bbk.dcs.automed.qproc.annotate.grammars.simpleComp.SimpleComp
 -  
 - simpleListTokens() - 
Method in class uk.ac.bbk.dcs.automed.qproc.annotate.grammars.simpleCompAppend.SimpleCompAppend
 -  
 - simpleListTokens() - 
Method in class uk.ac.bbk.dcs.automed.qproc.annotate.grammars.simpleCompAppendMonus.SimpleCompAppendMonus
 -  
 - simpleListTokens() - 
Method in class uk.ac.bbk.dcs.automed.qproc.annotate.grammars.simpleCompMember.SimpleCompMember
 -  
 - SimpleMessageHandler - Class in uk.ac.ic.doc.automed.p2p.communication
 -  
 - SimpleMessageHandler() - 
Constructor for class uk.ac.ic.doc.automed.p2p.communication.SimpleMessageHandler
 - Creates a new instance of SimpleMessageHandler
 - SimplePropertyObject - Class in uk.ac.ic.doc.automed.p2p.gui
 -  
 - SimplePropertyObject() - 
Constructor for class uk.ac.ic.doc.automed.p2p.gui.SimplePropertyObject
 -  
 - SimplePropertyObject(String, String, boolean, RuntimeParameters) - 
Constructor for class uk.ac.ic.doc.automed.p2p.gui.SimplePropertyObject
 -  
 - simpleQuals() - 
Method in class uk.ac.bbk.dcs.automed.qproc.annotate.grammars.simpleComp.SimpleComp
 -  
 - simpleQuals() - 
Method in class uk.ac.bbk.dcs.automed.qproc.annotate.grammars.simpleCompAppend.SimpleCompAppend
 -  
 - simpleQuals() - 
Method in class uk.ac.bbk.dcs.automed.qproc.annotate.grammars.simpleCompAppendMonus.SimpleCompAppendMonus
 -  
 - simpleQuals() - 
Method in class uk.ac.bbk.dcs.automed.qproc.annotate.grammars.simpleCompMember.SimpleCompMember
 -  
 - simpleQuery(ASG, Schema) - 
Static method in class uk.ac.ic.doc.automed.qproc.QueryMediator
 -  
 - simpleQuery(ASG, Schema, QueryProcessorConfiguration) - 
Static method in class uk.ac.ic.doc.automed.qproc.QueryMediator
 -  
 - simpleScheme() - 
Method in class uk.ac.bbk.dcs.automed.qproc.annotate.grammars.schemes.Schemes
 -  
 - simpleScheme() - 
Method in class uk.ac.bbk.dcs.automed.qproc.annotate.grammars.simpleComp.SimpleComp
 -  
 - simpleScheme() - 
Method in class uk.ac.bbk.dcs.automed.qproc.annotate.grammars.simpleCompAppend.SimpleCompAppend
 -  
 - simpleScheme() - 
Method in class uk.ac.bbk.dcs.automed.qproc.annotate.grammars.simpleCompAppendMonus.SimpleCompAppendMonus
 -  
 - simpleScheme() - 
Method in class uk.ac.bbk.dcs.automed.qproc.annotate.grammars.simpleCompMember.SimpleCompMember
 -  
 - simpleScheme() - 
Method in class uk.ac.bbk.dcs.automed.qproc.annotate.grammars.sql.IQLForSQLQueryParser
 -  
 - simpleSchemeOrComp() - 
Method in class uk.ac.bbk.dcs.automed.qproc.annotate.grammars.sql.IQLForSQLQueryParser
 -  
 - simpleSchemeOrSimpleComp() - 
Method in class uk.ac.bbk.dcs.automed.qproc.annotate.grammars.simpleCompAppend.SimpleCompAppend
 -  
 - simpleSchemeOrSimpleComp() - 
Method in class uk.ac.bbk.dcs.automed.qproc.annotate.grammars.simpleCompAppendMonus.SimpleCompAppendMonus
 -  
 - SimpleStringHashing - Class in uk.ac.ic.doc.automed.util.hashing
 - SimpleStringHashing.java
 Implements a simple hashing function for string which is the sum 
 of three integer values: ASCII codes of the first and last characters
 and the string's length - SimpleStringHashing() - 
Constructor for class uk.ac.ic.doc.automed.util.hashing.SimpleStringHashing
 - Creates a new instance of SimpleStringHashing
 - simpleTuple() - 
Method in class uk.ac.bbk.dcs.automed.qproc.annotate.grammars.simpleComp.SimpleComp
 -  
 - simpleTuple() - 
Method in class uk.ac.bbk.dcs.automed.qproc.annotate.grammars.simpleCompAppend.SimpleCompAppend
 -  
 - simpleTuple() - 
Method in class uk.ac.bbk.dcs.automed.qproc.annotate.grammars.simpleCompAppendMonus.SimpleCompAppendMonus
 -  
 - simpleTuple() - 
Method in class uk.ac.bbk.dcs.automed.qproc.annotate.grammars.simpleCompMember.SimpleCompMember
 -  
 - simpleTuple() - 
Method in class uk.ac.bbk.dcs.automed.qproc.annotate.grammars.sql.IQLForSQLQueryParser
 -  
 - simpleTupleSeq() - 
Method in class uk.ac.bbk.dcs.automed.qproc.annotate.grammars.sql.IQLForSQLQueryParser
 -  
 - simplify(Cell, List, Cell, Map) - 
Method in class uk.ac.bbk.dcs.automed.qproc.optimise.optimisers.SQLWrapperSKJOptimiser
 - 
 Find 'partners'.
 - simplifyBasedOnEquijoins(Cell) - 
Method in class uk.ac.bbk.dcs.automed.qproc.optimise.optimisers.EmptyJoinOptimiser
 - Traverses query and replaces certain comprehensions with [].
 - simplifyBasedOnEquiJoinsHelper(Cell) - 
Method in class uk.ac.bbk.dcs.automed.qproc.optimise.optimisers.EmptyJoinOptimiser
 -  
 - simplifyBasedOnQualifiers(Cell) - 
Static method in class uk.ac.bbk.dcs.automed.qproc.optimise.optimisers.OptimisationUtility
 - 
 Performs in a bottom-up manner the following simplifications:
 - simplifyMemberFunction(Cell) - 
Method in class uk.ac.bbk.dcs.automed.qproc.optimise.optimisers.EmptyJoinOptimiser
 -  
 - simplifyRange(Cell) - 
Static method in class uk.ac.bbk.dcs.automed.qproc.optimise.optimisers.OptimisationUtility
 -  
 - simplifyUnionIntersect(Cell) - 
Static method in class uk.ac.bbk.dcs.automed.qproc.optimise.optimisers.OptimisationUtility
 - Simplifies the input query so that union Void Void returns Void and intersect Any Any returns Any
 - sin(double) - 
Method in class uk.ac.ic.doc.automed.p2p.gui.graph.GShape
 -  
 - sing_func_name - 
Variable in class uk.ac.bbk.dcs.automed.qproc.functions.collections.Map
 -  
 - Single - Class in uk.ac.bbk.dcs.automed.qproc.functions.collections
 -  
 - Single() - 
Constructor for class uk.ac.bbk.dcs.automed.qproc.functions.collections.Single
 -  
 - single - 
Static variable in class uk.ac.ic.doc.automed.editor.Syntax.Token
 -  
 - SINGLE - 
Static variable in class uk.ac.ic.doc.automed.editor.UserActionClass
 -  
 - SINGLE_HANDLER_PER_EVENT - 
Static variable in class uk.ac.ic.doc.automed.p2p.Constants
 - assume that only one hander is registered for a network event
 - SINGLE_HANDLER_PER_EVENT - 
Static variable in class uk.ac.ic.doc.automed.p2p.directory.P2PDirectory
 -  
 - SingleBag - Class in uk.ac.bbk.dcs.automed.qproc.functions.collections
 -  
 - SingleBag() - 
Constructor for class uk.ac.bbk.dcs.automed.qproc.functions.collections.SingleBag
 -  
 - SingleSet - Class in uk.ac.bbk.dcs.automed.qproc.functions.collections
 -  
 - SingleSet() - 
Constructor for class uk.ac.bbk.dcs.automed.qproc.functions.collections.SingleSet
 -  
 - singleton() - 
Method in class uk.ac.bbk.dcs.automed.qproc.iql.Cell
 - Returns the root of an ASG representing an empty list
 - SINGLETON_METHOD - 
Static variable in class uk.ac.ic.doc.automed.util.ModuleConnector
 -  
 - site - 
Variable in class uk.ac.ic.doc.automed.p2p.wrappers.GoogleScholarWrapper
 -  
 - size() - 
Method in class it.unibo.cs.belief.Frame
 - Returns the cardinality of this frame.
 - size() - 
Method in class uk.ac.bbk.dcs.automed.graph.DirectedGraph
 -  
 - size() - 
Method in class uk.ac.bbk.dcs.automed.utils.ListMap
 -  
 - size() - 
Method in class uk.ac.ic.doc.automed.editor.autolayout.AutoLayout
 -  
 - size - 
Static variable in class uk.ac.ic.doc.automed.editor.autolayout.Queue
 -  
 - size() - 
Method in class uk.ac.ic.doc.automed.p2p.qproc.ASGResultSet
 - Return number of tuples in the result set
 - size - 
Variable in class uk.ac.ic.doc.automed.p2p.qproc.KRange
 -  
 - size() - 
Method in class uk.ac.ic.doc.automed.p2p.qproc.KRange
 - If the range is a countable set then we could count its number of elements
 using this method
 - size() - 
Method in class uk.ac.ic.doc.automed.p2p.qproc.planner.SQLableMap
 - override parent method to return a key set used in non-memory mode
 - size() - 
Method in interface uk.ac.ic.doc.automed.qproc.cache.IQueryCache
 -  
 - size() - 
Method in class uk.ac.ic.doc.automed.reps.Pathway
 - Returns the number of 
Schemas in the pathway.
 - size() - 
Method in class uk.ac.ic.doc.automed.tml.TempPathway
 -  
 - size() - 
Method in class uk.ac.ic.doc.automed.util.db.DBResultSet
 - return the total number of database records
 - size() - 
Method in class uk.ac.ic.doc.automed.wrappers.AutoMedTuple
 -  
 - SIZE_THRESHOLD - 
Static variable in class uk.ac.ic.doc.automed.p2p.Constants
 - true threshold to differentiate b/w single- and multi-fragment UDP trunks
 - skipTokens(int) - 
Method in class uk.ac.ic.doc.automed.xml.XMLReader
 -  
 - skipTokens(int[]) - 
Method in class uk.ac.ic.doc.automed.xml.XMLReader
 -  
 - skipToNextToken(int) - 
Method in class uk.ac.ic.doc.automed.xml.XMLReader
 -  
 - skipToNextToken(int[]) - 
Method in class uk.ac.ic.doc.automed.xml.XMLReader
 -  
 - SkolemiseEdge - Class in uk.ac.bbk.dcs.automed.xml.functions
 -  
 - SkolemiseEdge() - 
Constructor for class uk.ac.bbk.dcs.automed.xml.functions.SkolemiseEdge
 -  
 - skolemOn - 
Variable in class uk.ac.bbk.dcs.automed.xml.sra.old.xmldssGraph.XMLDSSRestructurer
 -  
 - skolemOn - 
Variable in class uk.ac.bbk.dcs.automed.xml.sra.old.XMLRestructurer
 -  
 - skolemType1(Schema, Document, String, String, int, String, Set, boolean, Map, Map) - 
Method in class uk.ac.bbk.dcs.automed.xml.sra.old.XMLRestructurer
 -  
 - skolemType2(Schema, String, String, String, Set, boolean, boolean) - 
Method in class uk.ac.bbk.dcs.automed.xml.sra.old.XMLRestructurer
 -  
 - SLASH - 
Static variable in class uk.ac.ic.doc.automed.util.db.Constants
 -  
 - SLASHATTR - 
Static variable in interface uk.ac.bbk.dcs.automed.qproc.translators.xquery.XQuery2IQLConstants
 -  
 - sleep() - 
Method in class uk.ac.ic.doc.automed.p2p.communication.AbstractDaemon.Worker
 -  
 - sleep() - 
Method in class uk.ac.ic.doc.automed.p2p.communication.TCPServer.Worker
 -  
 - sleep() - 
Method in class uk.ac.ic.doc.automed.p2p.routing.Cresendo.FingerTableFixer
 -  
 - SLEEP_TIME - 
Static variable in class uk.ac.ic.doc.automed.p2p.qproc.optimise.CapacitatedNetworkFlowOptimiser
 -  
 - sleepPeriod - 
Variable in class uk.ac.ic.doc.automed.p2p.routing.Cresendo.DomainStabilizer
 -  
 - slmodel - 
Variable in class uk.ac.ic.doc.automed.p2p.gui.RecordScroller
 -  
 - slotsToIgnore - 
Variable in class uk.ac.ic.doc.automed.reasoner.DefaultDIGRenderer
 -  
 - slotsToIgnore - 
Variable in class uk.ac.ic.doc.automed.reasoner.HDMDIGRenderer
 -  
 - SLSB - 
Static variable in class uk.ac.bbk.dcs.automed.qproc.iql.QSym
 -  
 - SMALL_KEY_LENGTH - 
Static variable in class uk.ac.ic.doc.automed.p2p.util.index.BPlusTreeIndexer
 -  
 - smartQuoting - 
Static variable in class uk.ac.ic.doc.automed.reps.Syntax
 -  
 - smatcher - 
Static variable in class uk.ac.ic.doc.automed.p2p.qproc.planner.QueryPlannerResult
 -  
 - smd - 
Variable in class uk.ac.ic.doc.automed.modelmanagement.modelgen.HDMToRelational
 -  
 - smd - 
Variable in class uk.ac.ic.doc.automed.modelmanagement.modelgen.HDMToSQL
 -  
 - smd - 
Variable in class uk.ac.ic.doc.automed.wrappers.SQLWrapper.ASGtoSQL
 -  
 - smerged - 
Variable in class uk.ac.ic.doc.automed.modelmanagement.operators.Merge
 -  
 - smerged - 
Variable in class uk.ac.ic.doc.automed.modelmanagement.operators.RenameMerge
 -  
 - smr - 
Static variable in class uk.ac.ic.doc.automed.p2p.son.SMRControllerChord
 -  
 - smr - 
Static variable in class uk.ac.ic.doc.automed.p2p.son.SMRControllerPGrid
 -  
 - smr - 
Variable in class uk.ac.ic.doc.automed.wrappers.SMRWrapper
 -  
 - SMRController - Interface in uk.ac.ic.doc.automed.p2p.son
 - A common interface for SMR controllers
 - SMRControllerChord - Class in uk.ac.ic.doc.automed.p2p.son
 -  
 - SMRControllerChord(AutoMedPeer, DHT, Properties) - 
Constructor for class uk.ac.ic.doc.automed.p2p.son.SMRControllerChord
 -  
 - SMRControllerChord(Object, String, int, AutoMedPeer, Properties) - 
Constructor for class uk.ac.ic.doc.automed.p2p.son.SMRControllerChord
 - Initialise an instance of SMRControllerChord
 - SMRControllerPGrid - Class in uk.ac.ic.doc.automed.p2p.son
 - SMRController.java
 Schema metadata controller over P-Grid
 - SMRControllerPGrid(int, int, Peer) - 
Constructor for class uk.ac.ic.doc.automed.p2p.son.SMRControllerPGrid
 - Creates a new instance of SMRController
 - SMRException - Exception in uk.ac.ic.doc.automed.p2p.son
 -  
 - SMRException(String, Throwable) - 
Constructor for exception uk.ac.ic.doc.automed.p2p.son.SMRException
 -  
 - SMRException(String) - 
Constructor for exception uk.ac.ic.doc.automed.p2p.son.SMRException
 -  
 - SMRFactory - Class in uk.ac.ic.doc.automed.p2p.son
 -  
 - SMRFactory() - 
Constructor for class uk.ac.ic.doc.automed.p2p.son.SMRFactory
 -  
 - SMRInitException - Exception in uk.ac.ic.doc.automed.p2p.son
 -  
 - SMRInitException(String, Throwable) - 
Constructor for exception uk.ac.ic.doc.automed.p2p.son.SMRInitException
 -  
 - SMRInitException(String) - 
Constructor for exception uk.ac.ic.doc.automed.p2p.son.SMRInitException
 -  
 - smrItem1 - 
Variable in class uk.ac.ic.doc.automed.modelmanagement.modeldef.SMRModelDef
 -  
 - smrItem1 - 
Variable in class uk.ac.ic.doc.automed.wrappers.SMRWrapperFactory
 -  
 - smrItem2 - 
Variable in class uk.ac.ic.doc.automed.modelmanagement.modeldef.SMRModelDef
 -  
 - smrItem2 - 
Variable in class uk.ac.ic.doc.automed.wrappers.SMRWrapperFactory
 -  
 - SMRModelDef - Class in uk.ac.ic.doc.automed.modelmanagement.modeldef
 - SMRModelDef.java
 - SMRModelDef() - 
Constructor for class uk.ac.ic.doc.automed.modelmanagement.modeldef.SMRModelDef
 - Creates a new instance of SchemaMetadataModelDef
 - SMRQueryProcessor - Class in uk.ac.ic.doc.automed.p2p.qproc
 - A customised query processor for the SMR overlay network
 - SMRQueryProcessor() - 
Constructor for class uk.ac.ic.doc.automed.p2p.qproc.SMRQueryProcessor
 - Create an instance of the Query Processor.
 - SMRReformulationProvider - Class in uk.ac.bbk.dcs.automed.qproc.reformulate
 - A 'specialised' reformulation provider for the specialised 
 SMR schema.
 - SMRReformulationProvider() - 
Constructor for class uk.ac.bbk.dcs.automed.qproc.reformulate.SMRReformulationProvider
 -  
 - SMRReformulationProvider(Schema, Schema[], QueryProcessorConfiguration) - 
Constructor for class uk.ac.bbk.dcs.automed.qproc.reformulate.SMRReformulationProvider
 -  
 - SMRTool - Class in uk.ac.ic.doc.automed.p2p.editor
 - An interface class with the AutoMed editors
 - SMRTool() - 
Constructor for class uk.ac.ic.doc.automed.p2p.editor.SMRTool
 -  
 - SMRWrapper - Class in uk.ac.ic.doc.automed.wrappers
 - A 'utility' wrapper that acts as a helper class for accessing the DHT-based
 schema metadata repository.
 - SMRWrapper() - 
Constructor for class uk.ac.ic.doc.automed.wrappers.SMRWrapper
 -  
 - SMRWrapper(AccessMethod, String) - 
Constructor for class uk.ac.ic.doc.automed.wrappers.SMRWrapper
 -  
 - SMRWrapperFactory - Class in uk.ac.ic.doc.automed.wrappers
 - SMRWrapperFactory.java
 - SMRWrapperFactory() - 
Constructor for class uk.ac.ic.doc.automed.wrappers.SMRWrapperFactory
 - Creates a new instance of SMRWrapperFactory
 - sName - 
Variable in class uk.ac.bbk.dcs.automed.dataWarehousing.dltInterface
 -  
 - sName - 
Variable in class uk.ac.bbk.dcs.automed.xml.relational.XMLDSSFromRDB
 -  
 - sName - 
Variable in class uk.ac.bbk.dcs.automed.xml.wrappers.XMLWrapper
 -  
 - so - 
Variable in class uk.ac.ic.doc.automed.editor.IDTool
 -  
 - so - 
Variable in class uk.ac.ic.doc.automed.editor.SchemaTool
 -  
 - so - 
Variable in class uk.ac.ic.doc.automed.wrappers.SQLWrapperFactory.SQLTable
 -  
 - sobid - 
Variable in class uk.ac.ic.doc.automed.SchemeRow
 -  
 - sobj - 
Variable in class uk.ac.ic.doc.automed.editor.PatternWritingTool
 -  
 - sobj_gno - 
Variable in class uk.ac.ic.doc.automed.wrappers.YattaWrapper
 -  
 - sobj_sp - 
Variable in class uk.ac.ic.doc.automed.wrappers.YattaWrapper
 -  
 - SOBJECT_ELEMENT_POS - 
Static variable in class uk.ac.ic.doc.automed.p2p.util.DataToolKit
 -  
 - sobjName - 
Variable in class uk.ac.ic.doc.automed.editor.PatternWritingTool
 -  
 - sobjText - 
Variable in class uk.ac.ic.doc.automed.editor.PatternWritingTool
 -  
 - socket - 
Variable in class uk.ac.ic.doc.automed.p2p.communication.AbstractDaemon.Worker
 -  
 - socket - 
Variable in class uk.ac.ic.doc.automed.p2p.communication.TCPServer.Worker
 -  
 - Solution - Class in it.unibo.cs.USI.tools
 -  
 - Solution(Map) - 
Constructor for class it.unibo.cs.USI.tools.Solution
 -  
 - SOME - 
Static variable in interface uk.ac.bbk.dcs.automed.qproc.translators.xquery.XQuery2IQLConstants
 -  
 - SOME - 
Static variable in interface uk.ac.ic.doc.automed.reasoner.DIGVocabulary.Language
 -  
 - Sort - Class in uk.ac.bbk.dcs.automed.qproc.functions.aggregation
 -  
 - Sort() - 
Constructor for class uk.ac.bbk.dcs.automed.qproc.functions.aggregation.Sort
 -  
 - sort() - 
Method in class uk.ac.bbk.dcs.automed.qproc.functions.ModifiedArray
 -  
 - sortDescendantsToRemove(Set) - 
Method in class uk.ac.bbk.dcs.automed.evolution.schemaEvolution.DataSourceSchemaEvolution
 -  
 - SortDistinct - Class in uk.ac.bbk.dcs.automed.qproc.functions.aggregation
 -  
 - SortDistinct() - 
Constructor for class uk.ac.bbk.dcs.automed.qproc.functions.aggregation.SortDistinct
 -  
 - sorted() - 
Method in class uk.ac.bbk.dcs.automed.qproc.functions.ModifiedArray
 -  
 - sortSchema(Schema) - 
Static method in class uk.ac.ic.doc.automed.p2p.util.DataToolKit
 - Use quick-sort to sort the schema objects in a schema
 - SOS - 
Variable in class uk.ac.ic.doc.automed.editor.PatternWritingTool
 -  
 - source - 
Variable in class uk.ac.bbk.dcs.automed.qproc.PreparedIQLQuery
 -  
 - source - 
Variable in class uk.ac.ic.doc.automed.p2p.editor.KRangeEditor.Handler
 -  
 - source - 
Variable in class uk.ac.ic.doc.automed.p2p.gui.graph.CommonScreenHandler
 -  
 - source - 
Variable in class uk.ac.ic.doc.automed.p2p.rank.pagerank.LinkTuple
 -  
 - source(Edge) - 
Method in interface uk.ac.ic.doc.automed.util.graph.GraphI
 -  
 - source(Edge) - 
Method in class uk.ac.ic.doc.automed.util.graph.impl.Graph
 -  
 - source - 
Variable in class uk.ac.ic.doc.automed.xmlschema.tree.TreeDragSource
 -  
 - source_background_colour - 
Static variable in class uk.ac.bbk.dcs.automed.modelmanagement.BBKSQLModelDef
 -  
 - source_background_colour - 
Static variable in class uk.ac.ic.doc.automed.modelmanagement.modeldef.RelModelDef
 -  
 - source_background_colour - 
Static variable in class uk.ac.ic.doc.automed.modelmanagement.modeldef.SQLModelDef
 -  
 - source_background_colour - 
Static variable in class uk.ac.ic.doc.automed.modelmanagement.modeldef.YattaModelDef
 -  
 - source_constraint_colour - 
Variable in class uk.ac.ic.doc.automed.modelmanagement.modeldef.SQLModelDef
 -  
 - SOURCE_PREFIX - 
Static variable in class uk.ac.ic.doc.automed.modelmanagement.modeldef.ModelDef
 - String prefixed to AutoMed oriented Model names in order to obtain
 source oriented Model names.
 - sourceArea - 
Variable in class uk.ac.ic.doc.automed.editor.RepositoryTool
 -  
 - sourceArea - 
Variable in class uk.ac.ic.doc.automed.editor.WrapperTool
 -  
 - sourceAttsOwnersMap - 
Variable in class uk.ac.bbk.dcs.automed.xml.sra.old.XMLRestructurer
 -  
 - sourceButt - 
Variable in class uk.ac.ic.doc.automed.editor.WrapperTool
 -  
 - sourceCards - 
Variable in class uk.ac.bbk.dcs.automed.xml.sra.SchemaRestructuringAlgorithm
 - Contains the S/T ElementRel cardinalities
 - sourceChildCID - 
Variable in class uk.ac.bbk.dcs.automed.xml.sra.old.XMLRestructurer.ElementRelMappingItem
 -  
 - sourceChildSLI - 
Variable in class uk.ac.bbk.dcs.automed.xml.sra.SRAElementRelMappingItem
 -  
 - sourceCIDNodeMap - 
Variable in class uk.ac.bbk.dcs.automed.xml.sra.old.XMLRestructurer
 - Contain S/T CIDs on the LHS and a pointer to the DOM element on the RHS
 - sourceClassSubClassTagMaps - 
Variable in class uk.ac.bbk.dcs.automed.xml.sra.old.XMLRestructurer
 - Contain source/target element or attribute in the LHS and the correspondending element or attribute that is lowest in the
 class hierarchy on the RHS
 - sourceElemTargetNLMap - 
Variable in class uk.ac.bbk.dcs.automed.xml.sra.old.XMLRestructurer
 - Contains the S/T NL scheme on the LHS and a LinkedList with the T/S path in the RHS
 - sourceException - 
Variable in exception uk.ac.ic.doc.automed.AutoMedException
 - Creates an AutoMedException.
 - sourceGraph - 
Variable in class uk.ac.bbk.dcs.automed.xml.sra.old.xmldssGraph.XMLDSSRestructurer
 -  
 - sourceObj - 
Variable in class uk.ac.ic.doc.automed.p2p.qproc.model.ObjectMapping
 -  
 - sourceObjects - 
Variable in class uk.ac.ic.doc.automed.modelmanagement.operators.Operator
 -  
 - sourceOrdering - 
Variable in class uk.ac.bbk.dcs.automed.xml.sra.SRAElementRelMappingItem
 -  
 - sourceParentCID - 
Variable in class uk.ac.bbk.dcs.automed.xml.sra.old.XMLRestructurer.ElementRelMappingItem
 -  
 - sourceParentSLI - 
Variable in class uk.ac.bbk.dcs.automed.xml.sra.SRAElementRelMappingItem
 -  
 - sources - 
Variable in class uk.ac.bbk.dcs.automed.dataWarehousing.dlt.TransfStep
 -  
 - sources - 
Variable in class uk.ac.ic.doc.automed.p2p.rank.pagerank.GraphReaderImpl
 -  
 - sourceSchema - 
Variable in class uk.ac.bbk.dcs.automed.qproc.reformulate.CacheQueryReformulationProvider
 -  
 - sourceSchema - 
Variable in class uk.ac.bbk.dcs.automed.qproc.reformulate.GAVQueryReformulationProvider
 -  
 - sourceSchema - 
Variable in class uk.ac.bbk.dcs.automed.qproc.reformulate.NewerGAVQueryReformulationProvider
 -  
 - sourceSchema - 
Variable in class uk.ac.bbk.dcs.automed.qproc.reformulate.NewGAVQueryReformulationProvider
 -  
 - sourceSchema - 
Variable in class uk.ac.bbk.dcs.automed.xml.sra.old.xmldssGraph.XMLDSSRestructurer
 -  
 - sourceSchema - 
Variable in class uk.ac.ic.doc.automed.editor.WrapperTool
 -  
 - sourceSchema - 
Variable in class uk.ac.ic.doc.automed.editor.XMLSchemaEditor
 - The source schema.
 - sourceSchema - 
Variable in class uk.ac.ic.doc.automed.modelmanagement.modelgen.HDMToEER
 -  
 - sourceSchema - 
Variable in class uk.ac.ic.doc.automed.modelmanagement.modelgen.HDMToHighLevel
 -  
 - sourceSchema - 
Variable in class uk.ac.ic.doc.automed.modelmanagement.modelgen.HDMToRDFS
 -  
 - sourceSchema - 
Variable in class uk.ac.ic.doc.automed.modelmanagement.modelgen.HDMToRelational
 -  
 - sourceSchema - 
Variable in class uk.ac.ic.doc.automed.modelmanagement.operators.Operator
 -  
 - sourceSchema - 
Variable in class uk.ac.ic.doc.automed.xmlschema.JTreeTransform
 -  
 - sourceSchemaSID - 
Variable in class uk.ac.bbk.dcs.automed.xml.sra.old.XMLRestructurer
 -  
 - sourceSubClassClassTagMaps - 
Variable in class uk.ac.bbk.dcs.automed.xml.sra.old.XMLRestructurer
 - Contain source/target element or attribute in the LHS and the correspondending element or attribute that is highest in the
 class hierarchy on the RHS
 - sourceSyntheticStuff - 
Variable in class uk.ac.bbk.dcs.automed.xml.sra.old.XMLRestructurer
 -  
 - sourceSyntheticStuff - 
Variable in class uk.ac.bbk.dcs.automed.xml.sra.SchemaRestructuringAlgorithm
 -  
 - sourceTargetNameMap - 
Variable in class uk.ac.bbk.dcs.automed.pathgen.PathwayGeneratorBAV
 -  
 - sourceTargetNameMap - 
Variable in class uk.ac.bbk.dcs.automed.pathgen.PathwayGeneratorMatchXMLDSS
 -  
 - sourceTree - 
Variable in class uk.ac.ic.doc.automed.xmlschema.tree.TreeDragSource
 -  
 - sourceUIDXMLDSS - 
Variable in class uk.ac.bbk.dcs.automed.xml.sra.old.xmldssGraph.XMLDSSRestructurer
 -  
 - sourceUIDXMLDSS - 
Variable in class uk.ac.bbk.dcs.automed.xml.sra.old.XMLRestructurer
 -  
 - sourceUIDXMLDSS - 
Variable in class uk.ac.bbk.dcs.automed.xml.sra.SchemaRestructuringAlgorithm
 -  
 - SOUTH - 
Static variable in class uk.ac.ic.doc.automed.editor.autolayout.CardinalPoints
 -  
 - sp - 
Variable in class uk.ac.ic.doc.automed.editor.PathwayTool
 -  
 - space - 
Static variable in class uk.ac.bbk.dcs.automed.hdmstore.HdmStoreCmd
 -  
 - SPACE - 
Static variable in class uk.ac.ic.doc.automed.p2p.wrappers.GoogleScholarWrapper
 -  
 - SPACE - 
Static variable in class uk.ac.ic.doc.automed.util.graph.impl.Graph
 -  
 - SPACER - 
Static variable in class uk.ac.ic.doc.automed.p2p.gui.HTMLObjectListViewer.Descriptor
 -  
 - Span - Class in uk.ac.bbk.dcs.automed.hdmstore
 - A Span represents one element in a HDM edge.
 - Span(String, String) - 
Constructor for class uk.ac.bbk.dcs.automed.hdmstore.Span
 - Constructor is passed the type (node or edge) and a string representation of the value
 - Span(String, String, char, int, int, String) - 
Constructor for class uk.ac.bbk.dcs.automed.hdmstore.Span
 - Constructor with all parameters set
 - Span(char, int, int) - 
Constructor for class uk.ac.bbk.dcs.automed.hdmstore.Span
 - Constructor with database ids passed
 - Span(String, char, int, int) - 
Constructor for class uk.ac.bbk.dcs.automed.hdmstore.Span
 - Constructor with edge type, database ids passed
 - Span() - 
Constructor for class uk.ac.bbk.dcs.automed.hdmstore.Span
 - Empty Span Constructor
 - spanningTree() - 
Method in class uk.ac.ic.doc.automed.util.graph.impl.DijkstraSPAlgorithm
 -  
 - spanningTree(Map, boolean) - 
Method in class uk.ac.ic.doc.automed.util.graph.impl.DijkstraSPAlgorithm
 - Construct a spanning tree based on the range information of the nodes of
 its graphs
 - spanningTree(Node) - 
Method in class uk.ac.ic.doc.automed.util.graph.impl.DijkstraSPAlgorithm
 -  
 - spanningTree(Node, boolean) - 
Method in class uk.ac.ic.doc.automed.util.graph.impl.DijkstraSPAlgorithm
 -  
 - spanningTreeList(int) - 
Method in class uk.ac.ic.doc.automed.util.graph.impl.DijkstraSPAlgorithm
 - Find a number of spanning trees in the graph
 - spanningTreeList(int, boolean) - 
Method in class uk.ac.ic.doc.automed.util.graph.impl.DijkstraSPAlgorithm
 -  
 - Special - 
Static variable in class uk.ac.bbk.dcs.automed.qproc.iql.QSym
 -  
 - SPECIAL_CHARS - 
Static variable in interface uk.ac.bbk.dcs.automed.qproc.translators.sql.SQL2IQLConstants
 -  
 - specialAnnotation(Cell) - 
Method in class uk.ac.bbk.dcs.automed.qproc.optimise.optimisers.UnnestOptimiser
 -  
 - specialCondition(Cell, Cell) - 
Method in class uk.ac.bbk.dcs.automed.qproc.optimise.optimisers.UnnestOptimiser
 -  
 - specialConstructor - 
Variable in exception uk.ac.bbk.dcs.automed.qproc.annotate.grammars.schemes.ParseException
 - This variable determines which constructor was used to create
 this object and thereby affects the semantics of the
 "getMessage" method (see below).
 - specialConstructor - 
Variable in exception uk.ac.bbk.dcs.automed.qproc.annotate.grammars.simpleComp.ParseException
 - This variable determines which constructor was used to create
 this object and thereby affects the semantics of the
 "getMessage" method (see below).
 - specialConstructor - 
Variable in exception uk.ac.bbk.dcs.automed.qproc.annotate.grammars.simpleCompAppend.ParseException
 - This variable determines which constructor was used to create
 this object and thereby affects the semantics of the
 "getMessage" method (see below).
 - specialConstructor - 
Variable in exception uk.ac.bbk.dcs.automed.qproc.annotate.grammars.simpleCompAppendMonus.ParseException
 - This variable determines which constructor was used to create
 this object and thereby affects the semantics of the
 "getMessage" method (see below).
 - specialConstructor - 
Variable in exception uk.ac.bbk.dcs.automed.qproc.annotate.grammars.simpleCompMember.ParseException
 - This variable determines which constructor was used to create
 this object and thereby affects the semantics of the
 "getMessage" method (see below).
 - specialConstructor - 
Variable in exception uk.ac.bbk.dcs.automed.qproc.annotate.grammars.sql.ParseException
 - This variable determines which constructor was used to create
 this object and thereby affects the semantics of the
 "getMessage" method (see below).
 - specialConstructor - 
Variable in exception uk.ac.bbk.dcs.automed.qproc.translators.sql.ParseException
 - This variable determines which constructor was used to create
 this object and thereby affects the semantics of the
 "getMessage" method (see below).
 - specialConstructor - 
Variable in exception uk.ac.bbk.dcs.automed.qproc.translators.xquery.ParseException
 - This variable determines which constructor was used to create
 this object and thereby affects the semantics of the
 "getMessage" method (see below).
 - specialfunctions - 
Static variable in class uk.ac.bbk.dcs.automed.qproc.iql.ReservedTokens
 -  
 - specialRelationalCase(Cell) - 
Method in class uk.ac.bbk.dcs.automed.qproc.optimise.optimisers.UnnestOptimiser
 -  
 - specialSet - 
Static variable in class uk.ac.bbk.dcs.automed.qproc.iql.ReservedTokens
 -  
 - specialToken - 
Variable in class uk.ac.bbk.dcs.automed.qproc.annotate.grammars.schemes.Token
 - This field is used to access special tokens that occur prior to this
 token, but after the immediately preceding regular (non-special) token.
 - specialToken - 
Variable in class uk.ac.bbk.dcs.automed.qproc.annotate.grammars.simpleComp.Token
 - This field is used to access special tokens that occur prior to this
 token, but after the immediately preceding regular (non-special) token.
 - specialToken - 
Variable in class uk.ac.bbk.dcs.automed.qproc.annotate.grammars.simpleCompAppend.Token
 - This field is used to access special tokens that occur prior to this
 token, but after the immediately preceding regular (non-special) token.
 - specialToken - 
Variable in class uk.ac.bbk.dcs.automed.qproc.annotate.grammars.simpleCompAppendMonus.Token
 - This field is used to access special tokens that occur prior to this
 token, but after the immediately preceding regular (non-special) token.
 - specialToken - 
Variable in class uk.ac.bbk.dcs.automed.qproc.annotate.grammars.simpleCompMember.Token
 - This field is used to access special tokens that occur prior to this
 token, but after the immediately preceding regular (non-special) token.
 - specialToken - 
Variable in class uk.ac.bbk.dcs.automed.qproc.annotate.grammars.sql.Token
 - This field is used to access special tokens that occur prior to this
 token, but after the immediately preceding regular (non-special) token.
 - specialToken - 
Variable in class uk.ac.bbk.dcs.automed.qproc.translators.sql.Token
 - This field is used to access special tokens that occur prior to this
 token, but after the immediately preceding regular (non-special) token.
 - specialToken - 
Variable in class uk.ac.bbk.dcs.automed.qproc.translators.xquery.Token
 - This field is used to access special tokens that occur prior to this
 token, but after the immediately preceding regular (non-special) token.
 - spf - 
Static variable in class uk.ac.ic.doc.automed.xml.XMLReader
 -  
 - spid - 
Variable in class uk.ac.ic.doc.automed.ssd.SSDPattern
 -  
 - Split - Class in uk.ac.bbk.dcs.automed.qproc.functions.string
 - Look at the corresponding Java API definition.
 - Split() - 
Constructor for class uk.ac.bbk.dcs.automed.qproc.functions.string.Split
 -  
 - split(String, String, int) - 
Static method in class uk.ac.ic.doc.automed.Util
 - A classic-version of split-string method which does NOT support RegExp
 - split(String, String) - 
Static method in class uk.ac.ic.doc.automed.Util
 - Split a delimited string dmle 27/2/2006
 - splitCDATA(String) - 
Static method in class uk.ac.ic.doc.automed.xml.XMLSyntax
 - Thorws XMLSyntaxException if the String is null.
 - splitCompRule - 
Variable in class uk.ac.bbk.dcs.automed.qproc.optimise.optimisers.ComprehensionDistributor
 -  
 - splitHDMSchemes(String, boolean, boolean) - 
Static method in class uk.ac.bbk.dcs.automed.qproc.iql.IQLUtility
 - Split a schema object scheme definition into either 
String objects
 - splitHDMSchemes(String, boolean) - 
Static method in class uk.ac.bbk.dcs.automed.qproc.iql.IQLUtility
 - Split a schema object scheme definition into objects
 - splitHDMString(String, String, boolean, boolean) - 
Static method in class uk.ac.bbk.dcs.automed.qproc.iql.IQLUtility
 -  
 - splitHDMString(String) - 
Static method in class uk.ac.ic.doc.automed.p2p.util.IQLToolKit
 - Recursively split an AutoMed scheme definition string into elements.
 Each scheme element is contained in a List object.
 - SplitLayoutComponent - Class in uk.ac.ic.doc.automed.p2p.gui.layout
 -  
 - SplitLayoutComponent(int[][]) - 
Constructor for class uk.ac.ic.doc.automed.p2p.gui.layout.SplitLayoutComponent
 - Takes a square 2-dim array argument which specifies the 
 grid positions that will be displayed
 - splitTable(Schema, SchemaObject, String, SchemaObject[], SchemaObject[], String, SchemaObject[], SchemaObject[]) - 
Static method in class basic.AutoMedInANutshell
 - Split a table into two tables.
 - SPS - 
Variable in class uk.ac.ic.doc.automed.editor.PatternWritingTool
 -  
 - spu - 
Variable in class uk.ac.ic.doc.automed.p2p.gui.ObjectBrowser
 -  
 - sql - 
Variable in class uk.ac.ic.doc.automed.modelmanagement.modeldef.SQLModelDef
 -  
 - sql - 
Variable in class uk.ac.ic.doc.automed.modelmanagement.modelgen.HDMToRelational
 -  
 - sql - 
Variable in class uk.ac.ic.doc.automed.modelmanagement.modelgen.HDMToSQL
 -  
 - sql - 
Variable in class uk.ac.ic.doc.automed.wrappers.SQLWrapper.ASGtoSQL
 -  
 - sql - 
Variable in class uk.ac.ic.doc.automed.wrappers.SQLWrapperFactory
 -  
 - SQL2IQL - Class in uk.ac.bbk.dcs.automed.qproc.translators.sql
 -  
 - SQL2IQL(InputStream) - 
Constructor for class uk.ac.bbk.dcs.automed.qproc.translators.sql.SQL2IQL
 -  
 - SQL2IQL(Reader) - 
Constructor for class uk.ac.bbk.dcs.automed.qproc.translators.sql.SQL2IQL
 -  
 - SQL2IQL(SQL2IQLTokenManager) - 
Constructor for class uk.ac.bbk.dcs.automed.qproc.translators.sql.SQL2IQL
 -  
 - SQL2IQL.JJCalls - Class in uk.ac.bbk.dcs.automed.qproc.translators.sql
 -  
 - SQL2IQL.JJCalls() - 
Constructor for class uk.ac.bbk.dcs.automed.qproc.translators.sql.SQL2IQL.JJCalls
 -  
 - SQL2IQL.LookaheadSuccess - Error in uk.ac.bbk.dcs.automed.qproc.translators.sql
 -  
 - SQL2IQL.LookaheadSuccess() - 
Constructor for error uk.ac.bbk.dcs.automed.qproc.translators.sql.SQL2IQL.LookaheadSuccess
 -  
 - SQL2IQLConstants - Interface in uk.ac.bbk.dcs.automed.qproc.translators.sql
 -  
 - SQL2IQLMainTemp - Class in uk.ac.bbk.dcs.automed.qproc.translators.sql
 - ParserMain.java
 
 Main class of SQL to IQL translator
 - SQL2IQLMainTemp() - 
Constructor for class uk.ac.bbk.dcs.automed.qproc.translators.sql.SQL2IQLMainTemp
 -  
 - SQL2IQLTokenManager - Class in uk.ac.bbk.dcs.automed.qproc.translators.sql
 -  
 - SQL2IQLTokenManager(SimpleCharStream) - 
Constructor for class uk.ac.bbk.dcs.automed.qproc.translators.sql.SQL2IQLTokenManager
 -  
 - SQL2IQLTokenManager(SimpleCharStream, int) - 
Constructor for class uk.ac.bbk.dcs.automed.qproc.translators.sql.SQL2IQLTokenManager
 -  
 - sql92 - 
Static variable in class basic.BankDatabaseIntegration
 -  
 - sql92 - 
Static variable in class basic.BankDatabaseWrapping
 -  
 - sql92 - 
Static variable in class basic.UniversityDatabaseIntegration
 -  
 - sql92 - 
Static variable in class basic.UniversityDatabaseWrapping
 -  
 - SQL_MODEL_FOREIGN_KEY - 
Static variable in class uk.ac.ic.doc.automed.modelmanagement.modeldef.SQLModelDef
 -  
 - SQL_MODEL_INDEX - 
Static variable in class uk.ac.ic.doc.automed.modelmanagement.modeldef.SQLModelDef
 -  
 - SQL_MODEL_NAME - 
Static variable in class uk.ac.ic.doc.automed.reps.RelationalOutputter
 -  
 - SQL_MODEL_PRIMARY_KEY - 
Static variable in class uk.ac.ic.doc.automed.modelmanagement.modeldef.SQLModelDef
 -  
 - SQL_MODEL_TABLE - 
Static variable in class uk.ac.ic.doc.automed.modelmanagement.modeldef.SQLModelDef
 - The name of the 
Construct used to represent SQL tables.
 - SQLableMap - Class in uk.ac.ic.doc.automed.p2p.qproc.planner
 -  
 - SQLableMap(Object) - 
Constructor for class uk.ac.ic.doc.automed.p2p.qproc.planner.SQLableMap
 -  
 - SQLableMap(String, Object, int) - 
Constructor for class uk.ac.ic.doc.automed.p2p.qproc.planner.SQLableMap
 -  
 - sqlCellToIQLCell(int, int, ResultSet) - 
Method in class uk.ac.bbk.dcs.automed.wrappers.BBKSQLWrapper
 -  
 - sqlCellToIQLCell(int, int, ResultSet) - 
Method in class uk.ac.ic.doc.automed.wrappers.SQLWrapper
 -  
 - sqlFeatures - 
Variable in class uk.ac.ic.doc.automed.modelmanagement.modelgen.HDMToRelational
 -  
 - sqlForCreateTable(String) - 
Method in class uk.ac.ic.doc.automed.p2p.directory.P2PDirectoryRepository
 -  
 - sqlForDeletion(String, Map, Map, Map) - 
Method in class uk.ac.ic.doc.automed.p2p.directory.P2PDirectoryRepository
 - Buid an sql statement for deletion
 - sqlForDropTable(String) - 
Method in class uk.ac.ic.doc.automed.p2p.directory.P2PDirectoryRepository
 -  
 - sqlForInsert(String, Object[]) - 
Method in class uk.ac.ic.doc.automed.p2p.directory.P2PDirectoryRepository
 - Insert a new row in a table where columns take values of different types
 Note: primitive types must be encapsulated by corresponding wrapper classes
 - sqlForInsert(String, String[]) - 
Method in class uk.ac.ic.doc.automed.p2p.directory.P2PDirectoryRepository
 - Insert a new row in a table where ALL columns take String-type
 values
 - sqlForInsert(String, Object[], Properties) - 
Method in class uk.ac.ic.doc.automed.p2p.directory.P2PDirectoryRepository
 -  
 - sqlForSimpleSelect(String, Object[], Map) - 
Method in class uk.ac.ic.doc.automed.p2p.directory.P2PDirectoryRepository
 -  
 - sqlForSimpleSelect(String, Object[], Map, Map, Map) - 
Method in class uk.ac.ic.doc.automed.p2p.directory.P2PDirectoryRepository
 - Overloading method for SQL select
 - sqlForSimpleSelect(String, Object[], Map) - 
Static method in class uk.ac.ic.doc.automed.p2p.util.DataToolKit
 -  
 - sqlForUpdateTable(String, Map, Map) - 
Method in class uk.ac.ic.doc.automed.p2p.directory.P2PDirectoryRepository
 -  
 - sqlForUpdateTable(String, Map, Map, Map, Map) - 
Method in class uk.ac.ic.doc.automed.p2p.directory.P2PDirectoryRepository
 -  
 - SQLFunctions - Class in uk.ac.ic.doc.automed.util.db
 -  
 - SQLFunctions() - 
Constructor for class uk.ac.ic.doc.automed.util.db.SQLFunctions
 -  
 - SQLIntegrator - Class in uk.ac.ic.doc.automed.matching
 - The Integrator of SQL schemas
 - SQLIntegrator() - 
Constructor for class uk.ac.ic.doc.automed.matching.SQLIntegrator
 -  
 - SQLIntegratorMerger - Class in uk.ac.ic.doc.automed.matching
 -  
 - SQLIntegratorMerger() - 
Constructor for class uk.ac.ic.doc.automed.matching.SQLIntegratorMerger
 -  
 - SQLMapEntry - Interface in uk.ac.ic.doc.automed.util
 -  
 - SQLModelDef - Class in uk.ac.ic.doc.automed.modelmanagement.modeldef
 -  
 - SQLModelDef() - 
Constructor for class uk.ac.ic.doc.automed.modelmanagement.modeldef.SQLModelDef
 - Creates a new instance of SQLModelDef
 - SQLQuery - Class in uk.ac.ic.doc.automed.wrappers
 - An SQLQuery expression tree that can be generated by 
 the high level wrapper 
SQLWrapper and used by a low level wrapper
 as the basis for generating SQL queries on a relational database. - SQLQuery(AutoMedQueryToken, Object[]) - 
Constructor for class uk.ac.ic.doc.automed.wrappers.SQLQuery
 -  
 - SQLQuery(AutoMedQueryToken, Object) - 
Constructor for class uk.ac.ic.doc.automed.wrappers.SQLQuery
 -  
 - SQLRelationshipExtractor - Class in uk.ac.ic.doc.automed.matching
 - The class for the extraction of relationships between SQL schema elements.
 - SQLRelationshipExtractor() - 
Constructor for class uk.ac.ic.doc.automed.matching.SQLRelationshipExtractor
 -  
 - SQLResult - Class in uk.ac.ic.doc.automed.wrappers
 - Provides a representation of the data associated with a scheme 
 in an AutoMed Schema.
 - SQLResult(int) - 
Constructor for class uk.ac.ic.doc.automed.wrappers.SQLResult
 - return the instance of the scheme which the cursor currently points
 at, as an ArrayList of Objects.
 - sqlString - 
Variable in class uk.ac.ic.doc.automed.wrappers.ICOWLDLWrapperFactory
 -  
 - sqlTables - 
Variable in class uk.ac.ic.doc.automed.reps.RelationalOutputter
 -  
 - SQLTransformations - Class in uk.ac.ic.doc.automed.modelmanagement.mapping
 -  
 - SQLTransformations() - 
Constructor for class uk.ac.ic.doc.automed.modelmanagement.mapping.SQLTransformations
 -  
 - sqlWF - 
Static variable in class uk.ac.ic.doc.automed.editor.MatchingTool
 -  
 - sqlWF - 
Static variable in class uk.ac.ic.doc.automed.matching.SchemaElement
 -  
 - sqlWF - 
Variable in class uk.ac.ic.doc.automed.matching.SQLIntegrator
 -  
 - sqlWF - 
Variable in class uk.ac.ic.doc.automed.matching.SQLRelationshipExtractor
 -  
 - SQLWrapper - Class in uk.ac.ic.doc.automed.wrappers
 - An AutoMed high wrapper for connecting to SQL databases that have a
 JBDC driver.
 - SQLWrapper() - 
Constructor for class uk.ac.ic.doc.automed.wrappers.SQLWrapper
 -  
 - SQLWrapper(AccessMethod, String) - 
Constructor for class uk.ac.ic.doc.automed.wrappers.SQLWrapper
 -  
 - SQLWrapper.ASGtoSQL - Class in uk.ac.ic.doc.automed.wrappers
 -  
 - SQLWrapper.ASGtoSQL() - 
Constructor for class uk.ac.ic.doc.automed.wrappers.SQLWrapper.ASGtoSQL
 -  
 - SQLWrapperFactory - Class in uk.ac.ic.doc.automed.wrappers
 - An AutoMed high wrapper factory for creating 
SQLWrapper instances. - SQLWrapperFactory() - 
Constructor for class uk.ac.ic.doc.automed.wrappers.SQLWrapperFactory
 -  
 - SQLWrapperFactory.SQLTable - Class in uk.ac.ic.doc.automed.wrappers
 -  
 - SQLWrapperFactory.SQLTable(SchemaObject, int) - 
Constructor for class uk.ac.ic.doc.automed.wrappers.SQLWrapperFactory.SQLTable
 -  
 - SQLWrapperSKJOptimiser - Class in uk.ac.bbk.dcs.automed.qproc.optimise.optimisers
 - Removes self-key joins occurring because of the dual layer of schemas that the 
SQLModelDef class introduces. - SQLWrapperSKJOptimiser(QueryOptimisationProvider) - 
Constructor for class uk.ac.bbk.dcs.automed.qproc.optimise.optimisers.SQLWrapperSKJOptimiser
 -  
 - SQUOTE - 
Static variable in class uk.ac.ic.doc.automed.AppConstants
 -  
 - SQUOTE - 
Static variable in class uk.ac.ic.doc.automed.p2p.gui.expressionBuilder.FunctionBuilder
 -  
 - SQUOTE - 
Static variable in class uk.ac.ic.doc.automed.p2p.gui.expressionBuilder.TypedTextField
 -  
 - sra - 
Variable in class uk.ac.bbk.dcs.automed.xml.sra.SRAPhase1
 -  
 - sra - 
Variable in class uk.ac.bbk.dcs.automed.xml.sra.SRAPhase2
 -  
 - SRAElementRelMappingItem - Class in uk.ac.bbk.dcs.automed.xml.sra
 -  
 - SRAElementRelMappingItem(String, String, int, Node, Node) - 
Constructor for class uk.ac.bbk.dcs.automed.xml.sra.SRAElementRelMappingItem
 -  
 - srai - 
Variable in class uk.ac.bbk.dcs.automed.xml.sra.SchemaRestructuringAlgorithm
 -  
 - SRAInitialisation - Class in uk.ac.bbk.dcs.automed.xml.sra
 -  
 - SRAInitialisation() - 
Constructor for class uk.ac.bbk.dcs.automed.xml.sra.SRAInitialisation
 -  
 - SRAInitialisationBasic - Class in uk.ac.bbk.dcs.automed.xml.sra
 -  
 - SRAInitialisationBasic() - 
Constructor for class uk.ac.bbk.dcs.automed.xml.sra.SRAInitialisationBasic
 -  
 - SRAInitialisationExtended - Class in uk.ac.bbk.dcs.automed.xml.sra
 -  
 - SRAInitialisationExtended() - 
Constructor for class uk.ac.bbk.dcs.automed.xml.sra.SRAInitialisationExtended
 -  
 - sraP1 - 
Variable in class uk.ac.bbk.dcs.automed.xml.sra.SchemaRestructuringAlgorithm
 -  
 - sraP2 - 
Variable in class uk.ac.bbk.dcs.automed.xml.sra.SchemaRestructuringAlgorithm
 -  
 - SRAPhase1 - Class in uk.ac.bbk.dcs.automed.xml.sra
 -  
 - SRAPhase1(SchemaRestructuringAlgorithm) - 
Constructor for class uk.ac.bbk.dcs.automed.xml.sra.SRAPhase1
 -  
 - SRAPhase2 - Class in uk.ac.bbk.dcs.automed.xml.sra
 -  
 - SRAPhase2(SchemaRestructuringAlgorithm) - 
Constructor for class uk.ac.bbk.dcs.automed.xml.sra.SRAPhase2
 -  
 - SRAPhase2Basic - Class in uk.ac.bbk.dcs.automed.xml.sra
 -  
 - SRAPhase2Basic(SchemaRestructuringAlgorithm) - 
Constructor for class uk.ac.bbk.dcs.automed.xml.sra.SRAPhase2Basic
 -  
 - SRAPhase2Extended - Class in uk.ac.bbk.dcs.automed.xml.sra
 -  
 - SRAPhase2Extended(SchemaRestructuringAlgorithm) - 
Constructor for class uk.ac.bbk.dcs.automed.xml.sra.SRAPhase2Extended
 -  
 - sras - 
Variable in class uk.ac.bbk.dcs.automed.xml.sra.SchemaRestructuringAlgorithm
 -  
 - SRAStatistics - Class in uk.ac.bbk.dcs.automed.xml.sra
 -  
 - SRAStatistics() - 
Constructor for class uk.ac.bbk.dcs.automed.xml.sra.SRAStatistics
 -  
 - SRASyntheticExtent - Class in uk.ac.bbk.dcs.automed.xml.sra
 -  
 - SRASyntheticExtent(String) - 
Constructor for class uk.ac.bbk.dcs.automed.xml.sra.SRASyntheticExtent
 -  
 - SRC_ADDRESS - 
Static variable in class uk.ac.ic.doc.automed.p2p.communication.ResponseHandler
 -  
 - ss - 
Variable in class uk.ac.ic.doc.automed.modelmanagement.operators.Operator
 -  
 - sSchema - 
Variable in class uk.ac.bbk.dcs.automed.dataWarehousing.dltInterface
 -  
 - ssd - 
Variable in class uk.ac.ic.doc.automed.editor.PatternWritingTool
 -  
 - ssdBuffer - 
Variable in class uk.ac.ic.doc.automed.wrappers.YattaWrapper
 -  
 - ssdf - 
Variable in class uk.ac.ic.doc.automed.editor.PatternWritingTool
 -  
 - ssdfName - 
Variable in class uk.ac.ic.doc.automed.editor.PatternWritingTool
 -  
 - SSDFormat - Class in uk.ac.ic.doc.automed.ssd
 - The SSDFormat class represents a format of a particular 
 semistructured datasource as a set of 
SSDPatterns. - SSDFormat(String) - 
Constructor for class uk.ac.ic.doc.automed.ssd.SSDFormat
 -  
 - SSDFormat(int, String) - 
Constructor for class uk.ac.ic.doc.automed.ssd.SSDFormat
 -  
 - ssdfText - 
Variable in class uk.ac.ic.doc.automed.editor.PatternWritingTool
 -  
 - SSDFunctionTable - Class in uk.ac.ic.doc.automed.wrappers
 -  
 - SSDFunctionTable() - 
Constructor for class uk.ac.ic.doc.automed.wrappers.SSDFunctionTable
 -  
 - ssdModel - 
Variable in class uk.ac.ic.doc.automed.editor.PatternWritingTool
 -  
 - SSDPattern - Class in uk.ac.ic.doc.automed.ssd
 - The SSDPattern class represents a pattern used in a particular 
 
SSDFormat. - SSDPattern(Pattern) - 
Constructor for class uk.ac.ic.doc.automed.ssd.SSDPattern
 -  
 - SSDPattern(int) - 
Constructor for class uk.ac.ic.doc.automed.ssd.SSDPattern
 -  
 - ssdpatterns - 
Variable in class uk.ac.ic.doc.automed.ssd.SSDFormat
 -  
 - ssdrowCount - 
Variable in class uk.ac.ic.doc.automed.editor.PatternWritingTool
 -  
 - ssdTable - 
Variable in class uk.ac.ic.doc.automed.editor.PatternWritingTool
 -  
 - ssdText - 
Variable in class uk.ac.ic.doc.automed.editor.PatternWritingTool
 -  
 - ssingleton() - 
Method in class uk.ac.bbk.dcs.automed.qproc.iql.Cell
 - Returns the root of an ASG representing an empty set
 - SSMDR - Class in uk.ac.ic.doc.automed
 - The SSMD library<<
 - SSMDR() - 
Constructor for class uk.ac.ic.doc.automed.SSMDR
 -  
 - SSMDR_DataSourceName - 
Static variable in class uk.ac.ic.doc.automed.SSMDR
 -  
 - SSMDRException - Exception in uk.ac.ic.doc.automed
 - The class of exceptions generated by
 
SSMD. - SSMDRException(String) - 
Constructor for exception uk.ac.ic.doc.automed.SSMDRException
 - Creates a SSMDException.
 - standalone - 
Variable in class uk.ac.ic.doc.automed.editor.Gui
 -  
 - standalone - 
Variable in class uk.ac.ic.doc.automed.p2p.gui.PeerApplication
 -  
 - StandardFoldFunctionTable - Class in uk.ac.bbk.dcs.automed.qproc.optimise
 -  
 - StandardFoldFunctionTable() - 
Constructor for class uk.ac.bbk.dcs.automed.qproc.optimise.StandardFoldFunctionTable
 -  
 - StandardFunctionTable - Class in uk.ac.bbk.dcs.automed.qproc
 - Class that creates a FunctionTable containing all currently implemented functions.
 - StandardFunctionTable() - 
Constructor for class uk.ac.bbk.dcs.automed.qproc.StandardFunctionTable
 -  
 - StandardOptimisationProvider - Class in uk.ac.bbk.dcs.automed.qproc.optimise
 - This class coordinates the application of the logical optimisations.
 - StandardOptimisationProvider() - 
Constructor for class uk.ac.bbk.dcs.automed.qproc.optimise.StandardOptimisationProvider
 -  
 - standardStroke - 
Static variable in class uk.ac.ic.doc.automed.editor.DrawArc
 -  
 - standardStroke - 
Static variable in class uk.ac.ic.doc.automed.editor.DrawVertex
 -  
 - standardWhere() - 
Static method in class uk.ac.bbk.dcs.automed.qproc.translators.sql.SQL2IQL
 -  
 - STAR - 
Static variable in interface uk.ac.bbk.dcs.automed.qproc.translators.xquery.XQuery2IQLConstants
 -  
 - start(String[]) - 
Method in class uk.ac.ic.doc.automed.p2p.apps.EmulatorApp
 -  
 - start() - 
Method in class uk.ac.ic.doc.automed.p2p.editor.ProgressConsole
 -  
 - start() - 
Method in class uk.ac.ic.doc.automed.p2p.qproc.planner.QueryPlannerResult.Accounting
 -  
 - start() - 
Method in class uk.ac.ic.doc.automed.p2p.util.topk.JStar
 - Start the algorithm
 - start - 
Variable in class uk.ac.ic.doc.automed.wrappers.YattaWrapper.StateGraph
 -  
 - start(String) - 
Method in class uk.ac.ic.doc.automed.xml.XMLReader
 -  
 - start(InputSource) - 
Method in class uk.ac.ic.doc.automed.xml.XMLReader
 -  
 - start() - 
Method in class uk.ac.ic.doc.automed.xml.XMLWriter
 - Output will be appended to the (initially empty) returned supplied StringBuffer
 - start(OutputStream) - 
Method in class uk.ac.ic.doc.automed.xml.XMLWriter
 - Output will be written to your supplied OutputStream using the encoding as returned by getEncoding()
 - start(Writer) - 
Method in class uk.ac.ic.doc.automed.xml.XMLWriter
 - Output will be written to your supplied Writer.
 - START_DOCUMENT - 
Static variable in interface uk.ac.ic.doc.automed.xml.XMLifyConstants
 -  
 - START_ELEMENT - 
Static variable in interface uk.ac.ic.doc.automed.xml.XMLifyConstants
 -  
 - start_production() - 
Method in class uk.ac.bbk.dcs.automed.qproc.iql.EnvParser
 - Indicates start production.
 - start_production() - 
Method in class uk.ac.bbk.dcs.automed.qproc.iql.QParser
 - Indicates start production.
 - start_state() - 
Method in class uk.ac.bbk.dcs.automed.qproc.iql.EnvParser
 - Indicates start state.
 - start_state() - 
Method in class uk.ac.bbk.dcs.automed.qproc.iql.QParser
 - Indicates start state.
 - startAngle - 
Variable in class uk.ac.ic.doc.automed.p2p.gui.graph.GArc
 -  
 - startAngle - 
Variable in class uk.ac.ic.doc.automed.p2p.gui.graph.GPolyArcEdge
 -  
 - startApp(String) - 
Method in class uk.ac.ic.doc.automed.p2p.apps.MainApp
 -  
 - startApp(String[]) - 
Method in class uk.ac.ic.doc.automed.p2p.apps.RemoteExecApp
 -  
 - startAttribute - 
Static variable in class uk.ac.ic.doc.automed.reps.XMLSchemaOutputter
 - Start attribute for an XMLSchema element
 - startBootStrapHostInstance(String, int, Object, Properties) - 
Static method in class uk.ac.ic.doc.automed.p2p.son.ChordNetworkHelper
 -  
 - startBootStrapHostInstance(int, int) - 
Static method in class uk.ac.ic.doc.automed.p2p.son.PGridNetworkHelper
 -  
 - startCDATA() - 
Method in class uk.ac.bbk.dcs.automed.xml.wrappers.SAXWrapper.SAXQueryHandler
 -  
 - startClass - 
Static variable in class uk.ac.ic.doc.automed.reps.RDFSOutputter
 - Start class for an RDFS Class
 - startComplexType - 
Static variable in class uk.ac.ic.doc.automed.reps.XMLSchemaOutputter
 -  
 - startComplexTypeNoName - 
Static variable in class uk.ac.ic.doc.automed.reps.XMLSchemaOutputter
 -  
 - startDocument() - 
Method in class uk.ac.bbk.dcs.automed.xml.wrappers.XMLDSSSAX
 -  
 - startDocument() - 
Method in class uk.ac.ic.doc.automed.xml.XMLReader
 -  
 - startDomainStabilizer() - 
Method in class uk.ac.ic.doc.automed.p2p.routing.Cresendo
 - Stabilizer for updating the domain hierarchy
 - startDSP(String) - 
Static method in class uk.ac.ic.doc.automed.p2p.P2PNetworkFactory
 - Start the directory service peer as a daemon
 - startDSP(String, String) - 
Static method in class uk.ac.ic.doc.automed.p2p.P2PNetworkFactory
 -  
 - startDTD(String, String, String) - 
Method in class uk.ac.bbk.dcs.automed.xml.wrappers.SAXWrapper.SAXQueryHandler
 -  
 - startElement(String, String, String, Attributes) - 
Method in class uk.ac.bbk.dcs.automed.xml.wrappers.SAXWrapper.SAXQueryHandler
 -  
 - startElement(String, String, String, Attributes) - 
Method in class uk.ac.bbk.dcs.automed.xml.wrappers.XMLDSSSAX
 -  
 - startElement - 
Static variable in class uk.ac.ic.doc.automed.reps.XMLSchemaOutputter
 - Start element for an XMLSchema element
 - startElement(String, AttributeList) - 
Method in class uk.ac.ic.doc.automed.xml.XMLReader
 -  
 - startEmbeddedDB(String, String) - 
Static method in class uk.ac.ic.doc.automed.util.db.DBToolKit
 - Start the embedded db server
 - startEntity(String) - 
Method in class uk.ac.bbk.dcs.automed.xml.wrappers.SAXWrapper.SAXQueryHandler
 -  
 - startField - 
Static variable in class uk.ac.ic.doc.automed.reps.XMLSchemaOutputter
 -  
 - startFingerTableFixer() - 
Method in class uk.ac.ic.doc.automed.p2p.routing.Cresendo
 -  
 - startHostInstance(String, int, Object, String, Properties) - 
Static method in class uk.ac.ic.doc.automed.p2p.son.ChordNetworkHelper
 -  
 - startKey - 
Static variable in class uk.ac.ic.doc.automed.reps.XMLSchemaOutputter
 - Key tags
 - startKeyRef - 
Static variable in class uk.ac.ic.doc.automed.reps.XMLSchemaOutputter
 -  
 - startNode - 
Variable in class uk.ac.ic.doc.automed.p2p.gui.graph.FreePathComponent
 -  
 - startNodeIndex - 
Variable in class uk.ac.ic.doc.automed.p2p.gui.graph.SemiPolygonComponent
 -  
 - startPeer(String) - 
Static method in class uk.ac.ic.doc.automed.p2p.P2PNetworkFactory
 - Create an AutoMed peer and start it
 - startPeer(String, boolean, boolean) - 
Static method in class uk.ac.ic.doc.automed.p2p.P2PNetworkFactory
 - Start a peer with an additional parameter to flag whether to add a peer name
 to the default repository name
 - startPoint - 
Variable in class uk.ac.ic.doc.automed.p2p.qproc.commands.HighlightSchemaCommand
 -  
 - startPoint - 
Variable in class uk.ac.ic.doc.automed.p2p.qproc.commands.ViewSchemaGraphCommand
 -  
 - startProperty - 
Static variable in class uk.ac.ic.doc.automed.reps.RDFSOutputter
 - Start element for an RDFS property
 - startQueryPeerInstance(String, int, Object, String, Properties) - 
Static method in class uk.ac.ic.doc.automed.p2p.son.ChordNetworkHelper
 -  
 - startQueryPeerInstance(int, int) - 
Static method in class uk.ac.ic.doc.automed.p2p.son.PGridNetworkHelper
 -  
 - startSchema - 
Variable in class uk.ac.ic.doc.automed.p2p.tree.AbstractNetwork.AbstractPathway
 -  
 - startSelector - 
Static variable in class uk.ac.ic.doc.automed.reps.XMLSchemaOutputter
 -  
 - startSequence - 
Static variable in class uk.ac.ic.doc.automed.reps.XMLSchemaOutputter
 -  
 - startShell() - 
Method in class uk.ac.ic.doc.automed.p2p.apps.MainApp
 - A method to start a remote exection shell.
 - startStabilizer() - 
Method in class uk.ac.ic.doc.automed.p2p.routing.Cresendo
 -  
 - startThread() - 
Method in class uk.ac.ic.doc.automed.util.thread.AsynchThread
 - Start (rather resume) a thread's operation
 - startThread() - 
Method in class uk.ac.ic.doc.automed.util.thread.TimedThread
 - Start (rather resume) a thread's operation
 - startTime - 
Static variable in class uk.ac.ic.doc.automed.editor.Gui
 -  
 - startTime - 
Variable in class uk.ac.ic.doc.automed.p2p.editor.KQueryMain.ExecuteGraphListener
 -  
 - startTime - 
Variable in class uk.ac.ic.doc.automed.p2p.util.logging.ProcessNode
 -  
 - startVirtualHost(int, int) - 
Static method in class uk.ac.ic.doc.automed.p2p.son.PGridNetworkHelper
 -  
 - startVirtualPeers(String[], int[], Object[], String, Properties) - 
Static method in class uk.ac.ic.doc.automed.p2p.son.ChordNetworkHelper
 - Start k number of P-Grid peers on the localhost
 - startVirtualPeers(int, int, int) - 
Static method in class uk.ac.ic.doc.automed.p2p.son.PGridNetworkHelper
 - Start k number of P-Grid peers on the localhost
 - STAT_COLLECTOR_ADDR - 
Static variable in class uk.ac.ic.doc.automed.p2p.son.SMRControllerChord
 -  
 - state - 
Variable in class uk.ac.ic.doc.automed.p2p.gui.ScreenHandler
 -  
 - state - 
Variable in class uk.ac.ic.doc.automed.p2p.qproc.funcs.Function
 -  
 - STATE_CACHE - 
Static variable in class uk.ac.ic.doc.automed.util.cache.ObjectCache
 -  
 - STATE_CACHENEW - 
Static variable in class uk.ac.ic.doc.automed.util.cache.ObjectCache
 -  
 - STATE_DEFAULT - 
Static variable in class uk.ac.ic.doc.automed.util.cache.ObjectCache
 -  
 - STATE_HELLO_COMPLETE - 
Static variable in class uk.ac.ic.doc.automed.p2p.state.PeerStateHandler
 -  
 - STATE_HELLO_INIT - 
Static variable in class uk.ac.ic.doc.automed.p2p.state.PeerStateHandler
 -  
 - STATE_INIT - 
Static variable in class uk.ac.ic.doc.automed.p2p.state.PeerStateHandler
 -  
 - STATE_JOINED_BUT_UNSTABLISED - 
Static variable in class uk.ac.ic.doc.automed.p2p.state.DHTRoutingState
 - joined but stabliser has not been run
 - STATE_JOINED_COMPLETE - 
Static variable in class uk.ac.ic.doc.automed.p2p.state.DHTRoutingState
 - joined and stabliser has completed its (first) run
 - STATE_JOINED_GLOBAL - 
Static variable in class uk.ac.ic.doc.automed.p2p.state.PeerStateHandler
 -  
 - STATE_JOINED_LOCAL - 
Static variable in class uk.ac.ic.doc.automed.p2p.state.PeerStateHandler
 -  
 - STATE_NOCACHE - 
Static variable in class uk.ac.ic.doc.automed.util.cache.ObjectCache
 -  
 - STATE_READ - 
Static variable in class uk.ac.ic.doc.automed.util.cache.ObjectCache
 -  
 - STATE_REGISTER_GLOBAL - 
Static variable in class uk.ac.ic.doc.automed.p2p.state.PeerStateHandler
 -  
 - STATE_STAND_ALONE - 
Static variable in class uk.ac.ic.doc.automed.p2p.state.PeerStateHandler
 -  
 - STATE_WRITE - 
Static variable in class uk.ac.ic.doc.automed.util.cache.ObjectCache
 -  
 - STATE_WRITENEW - 
Static variable in class uk.ac.ic.doc.automed.util.cache.ObjectCache
 -  
 - StateChangedException - Exception in uk.ac.ic.doc.automed.p2p.state
 -  
 - StateChangedException(String, Throwable) - 
Constructor for exception uk.ac.ic.doc.automed.p2p.state.StateChangedException
 - Creates a new instance of StateChangedException
 - StateChangedException(String) - 
Constructor for exception uk.ac.ic.doc.automed.p2p.state.StateChangedException
 -  
 - StateChangedListener - Interface in uk.ac.ic.doc.automed.p2p.state
 -  
 - stategraph - 
Variable in class uk.ac.ic.doc.automed.wrappers.YattaWrapper
 -  
 - stateHandler - 
Variable in class uk.ac.ic.doc.automed.p2p.AutoMedPeer
 -  
 - stateHandler - 
Variable in class uk.ac.ic.doc.automed.p2p.gui.LoginFrame
 -  
 - stateHandler - 
Variable in class uk.ac.ic.doc.automed.p2p.gui.PeerApplication
 -  
 - stateM - 
Variable in class uk.ac.ic.doc.automed.util.cache.ObjectCache
 -  
 - states - 
Variable in class uk.ac.ic.doc.automed.wrappers.YattaWrapper.StateGraph
 -  
 - stateScore - 
Variable in class uk.ac.ic.doc.automed.p2p.util.topk.JNode
 -  
 - STATIC_LEXER_ERROR - 
Static variable in error uk.ac.bbk.dcs.automed.qproc.annotate.grammars.schemes.TokenMgrError
 - An attempt wass made to create a second instance of a static token manager.
 - STATIC_LEXER_ERROR - 
Static variable in error uk.ac.bbk.dcs.automed.qproc.annotate.grammars.simpleComp.TokenMgrError
 - An attempt wass made to create a second instance of a static token manager.
 - STATIC_LEXER_ERROR - 
Static variable in error uk.ac.bbk.dcs.automed.qproc.annotate.grammars.simpleCompAppend.TokenMgrError
 - An attempt wass made to create a second instance of a static token manager.
 - STATIC_LEXER_ERROR - 
Static variable in error uk.ac.bbk.dcs.automed.qproc.annotate.grammars.simpleCompAppendMonus.TokenMgrError
 - An attempt wass made to create a second instance of a static token manager.
 - STATIC_LEXER_ERROR - 
Static variable in error uk.ac.bbk.dcs.automed.qproc.annotate.grammars.simpleCompMember.TokenMgrError
 - An attempt wass made to create a second instance of a static token manager.
 - STATIC_LEXER_ERROR - 
Static variable in error uk.ac.bbk.dcs.automed.qproc.annotate.grammars.sql.TokenMgrError
 - An attempt wass made to create a second instance of a static token manager.
 - STATIC_LEXER_ERROR - 
Static variable in error uk.ac.bbk.dcs.automed.qproc.translators.sql.TokenMgrError
 - An attempt wass made to create a second instance of a static token manager.
 - STATIC_LEXER_ERROR - 
Static variable in error uk.ac.bbk.dcs.automed.qproc.translators.xquery.TokenMgrError
 - An attempt wass made to create a second instance of a static token manager.
 - staticFlag - 
Static variable in class uk.ac.bbk.dcs.automed.qproc.annotate.grammars.schemes.SimpleCharStream
 -  
 - staticFlag - 
Static variable in class uk.ac.bbk.dcs.automed.qproc.annotate.grammars.simpleComp.SimpleCharStream
 -  
 - staticFlag - 
Static variable in class uk.ac.bbk.dcs.automed.qproc.annotate.grammars.simpleCompAppend.SimpleCharStream
 -  
 - staticFlag - 
Static variable in class uk.ac.bbk.dcs.automed.qproc.annotate.grammars.simpleCompAppendMonus.SimpleCharStream
 -  
 - staticFlag - 
Static variable in class uk.ac.bbk.dcs.automed.qproc.annotate.grammars.simpleCompMember.SimpleCharStream
 -  
 - staticFlag - 
Static variable in class uk.ac.bbk.dcs.automed.qproc.annotate.grammars.sql.SimpleCharStream
 -  
 - staticFlag - 
Static variable in class uk.ac.bbk.dcs.automed.qproc.translators.sql.SimpleCharStream
 -  
 - staticFlag - 
Static variable in class uk.ac.bbk.dcs.automed.qproc.translators.xquery.SimpleCharStream
 -  
 - StatisticsModule - Class in uk.ac.ic.doc.automed.matching.modules.bidirectionalmap
 - The module that compares the schema elements based on statistic information of the appearance of
 special characters on their instances
 - StatisticsModule(SchemaElement[], SchemaElement[]) - 
Constructor for class uk.ac.ic.doc.automed.matching.modules.bidirectionalmap.StatisticsModule
 - Constructs a 
StatisticsModule to compare the specified schema elements in the input arrays.
 - StatisticsModule(SchemaElementPair[]) - 
Constructor for class uk.ac.ic.doc.automed.matching.modules.bidirectionalmap.StatisticsModule
 -  
 - StatisticsModule(ArrayList, ArrayList) - 
Constructor for class uk.ac.ic.doc.automed.matching.modules.bidirectionalmap.StatisticsModule
 - Constructs a 
StatisticsModule to compare the specified schema elements in the input lists.
 - StatisticsModule - Class in uk.ac.ic.doc.automed.matching.modules.intervals
 - The module that compares the schema elements based on statistic information of the appearance of
 special characters on their instances
 - StatisticsModule(SchemaElementPair[]) - 
Constructor for class uk.ac.ic.doc.automed.matching.modules.intervals.StatisticsModule
 -  
 - StatisticsModule - Class in uk.ac.ic.doc.automed.matching.modules.probability.binary
 - The module that compares the schema elements based on statistic information of the appearance of
 special characters on their instances
 - StatisticsModule(SchemaElementPair[]) - 
Constructor for class uk.ac.ic.doc.automed.matching.modules.probability.binary.StatisticsModule
 -  
 - StatisticsModule - Class in uk.ac.ic.doc.automed.matching.modules.probability.senary
 - The module that compares the schema elements based on statistic information of the appearance of
 special characters on their instances
 - StatisticsModule(SchemaElementPair[]) - 
Constructor for class uk.ac.ic.doc.automed.matching.modules.probability.senary.StatisticsModule
 -  
 - stats - 
Variable in class uk.ac.ic.doc.automed.matching.Averages
 -  
 - status - 
Variable in class uk.ac.ic.doc.automed.p2p.protocol.model.PeerDescription
 -  
 - status - 
Variable in class uk.ac.ic.doc.automed.p2p.protocol.model.SchemaDescription
 -  
 - STATUS - 
Static variable in class uk.ac.ic.doc.automed.p2p.protocol.P2PConstants
 -  
 - ste - 
Variable in class uk.ac.ic.doc.automed.editor.ReportException
 -  
 - sTextSO - 
Variable in class uk.ac.bbk.dcs.automed.xml.sra.SchemaRestructuringAlgorithm
 -  
 - stitchListsA(ASG, ASG) - 
Static method in class uk.ac.bbk.dcs.automed.qproc.iql.IQLUtility
 -  
 - stitchListsB(ASG, ASG) - 
Static method in class uk.ac.bbk.dcs.automed.qproc.iql.IQLUtility
 -  
 - stm - 
Static variable in class uk.ac.ic.doc.automed.SSMDR
 -  
 - stm - 
Static variable in class uk.ac.ic.doc.automed.STR
 -  
 - STOP - 
Variable in class uk.ac.ic.doc.automed.editor.MatchingTool
 -  
 - stop - 
Variable in class uk.ac.ic.doc.automed.p2p.editor.KQueryMain.ExecuteGraphListener
 -  
 - stop() - 
Method in class uk.ac.ic.doc.automed.p2p.editor.ProgressConsole
 -  
 - stop() - 
Method in class uk.ac.ic.doc.automed.p2p.routing.Cresendo
 -  
 - stop() - 
Method in class uk.ac.ic.doc.automed.p2p.son.dht.AutoMedDHTImpl
 -  
 - stopAll() - 
Method in class uk.ac.ic.doc.automed.p2p.AutoMedMessagingHelper
 -  
 - stopButton - 
Variable in class uk.ac.ic.doc.automed.editor.IQLTool
 -  
 - stopEmbeddedDBs() - 
Static method in class uk.ac.ic.doc.automed.util.db.DBToolKit
 -  
 - stopFingerTableFixer() - 
Method in class uk.ac.ic.doc.automed.p2p.routing.Cresendo
 -  
 - stopMove - 
Variable in class uk.ac.ic.doc.automed.editor.TextPopUpHelper
 -  
 - stopped() - 
Method in class uk.ac.ic.doc.automed.editor.MatchingTool
 -  
 - stopRedirectSystemout(JTextComponent) - 
Static method in class uk.ac.ic.doc.automed.editor.GUITool
 -  
 - stopThread() - 
Method in class uk.ac.ic.doc.automed.util.thread.AsynchThread
 - Stop (rather pause) a thread
 - stopThread() - 
Method in class uk.ac.ic.doc.automed.util.thread.TimedThread
 - Stop (rather pause) a thread
 - STORAGE_DISK - 
Static variable in class uk.ac.ic.doc.automed.p2p.qproc.planner.SQLableMap
 -  
 - STORAGE_MEMORY - 
Static variable in class uk.ac.ic.doc.automed.p2p.qproc.planner.SQLableMap
 -  
 - StorageHandler - Class in uk.ac.ic.doc.automed.util.cache
 -  
 - StorageHandler() - 
Constructor for class uk.ac.ic.doc.automed.util.cache.StorageHandler
 -  
 - storageMode - 
Variable in class uk.ac.ic.doc.automed.p2p.qproc.planner.SQLableMap
 -  
 - STORED_SCHEMA_SIZE - 
Static variable in class uk.ac.ic.doc.automed.editor.DrawSchema
 -  
 - STORED_TYPE - 
Static variable in class uk.ac.ic.doc.automed.reps.Schema
 - All details about the constructs of STORED_TYPE schemas are held in the
 repository, and this type my exist in isolation..
 - storeM - 
Variable in class uk.ac.ic.doc.automed.util.cache.ObjectCache
 -  
 - storeReordering(Schema, String, String, int, int, Map) - 
Method in class uk.ac.bbk.dcs.automed.xml.sra.old.XMLRestructurer
 -  
 - storeReordering(Schema, String, String, int, int) - 
Method in class uk.ac.bbk.dcs.automed.xml.sra.SRAPhase2Extended
 -  
 - str - 
Variable in class uk.ac.ic.doc.automed.p2p.gui.HTMLObjectListViewer.Descriptor
 -  
 - STR - Class in uk.ac.ic.doc.automed
 - The STR library.
 - STR() - 
Constructor for class uk.ac.ic.doc.automed.STR
 -  
 - STR_DataSourceName - 
Static variable in class uk.ac.ic.doc.automed.STR
 -  
 - strength - 
Static variable in class uk.ac.ic.doc.automed.matching.relationships.Compatibility
 -  
 - strength - 
Static variable in class uk.ac.ic.doc.automed.matching.relationships.Disjointness
 -  
 - strength - 
Static variable in class uk.ac.ic.doc.automed.matching.relationships.Equivalence
 -  
 - strength - 
Static variable in class uk.ac.ic.doc.automed.matching.relationships.Incompatibility
 -  
 - strength - 
Static variable in class uk.ac.ic.doc.automed.matching.relationships.Overlapness
 -  
 - strength - 
Static variable in class uk.ac.ic.doc.automed.matching.relationships.Subsumption
 - The name of the 
Subsumption semantic relationship
 - STRException - Exception in uk.ac.ic.doc.automed
 - The class of exceptions generated by
 
STR. - STRException(String) - 
Constructor for exception uk.ac.ic.doc.automed.STRException
 - Creates a STRException.
 - STRING - 
Static variable in class uk.ac.bbk.dcs.automed.hdmstore.HdmStore
 -  
 - STRING - 
Static variable in class uk.ac.bbk.dcs.automed.qproc.iql.TypeConstants
 -  
 - string - 
Static variable in class uk.ac.ic.doc.automed.editor.Syntax.Token
 -  
 - string - 
Static variable in class uk.ac.ic.doc.automed.reps.Syntax.Token
 -  
 - STRING - 
Static variable in class uk.ac.ic.doc.automed.wrappers.AutoMedQuery
 -  
 - STRING - 
Static variable in class uk.ac.ic.doc.automed.wrappers.AutoMedType
 - Type to represent an arbitrary length string in the unicode 
 character set.
 - STRING_DEF - 
Static variable in class uk.ac.ic.doc.automed.wrappers.RDFSWrapperFactory
 -  
 - STRING_EQUALS - 
Static variable in interface uk.ac.ic.doc.automed.reasoner.DIGVocabulary.Language
 -  
 - STRING_TOKEN - 
Static variable in class uk.ac.ic.doc.automed.wrappers.AutoMedQuery
 -  
 - stringable - 
Variable in class uk.ac.ic.doc.automed.p2p.gui.RecordScroller
 -  
 - stringComparisonOperator() - 
Static method in class uk.ac.bbk.dcs.automed.qproc.translators.sql.SQL2IQL
 -  
 - StringFunctionTable - Class in uk.ac.bbk.dcs.automed.qproc.functions.string
 - FunctionTable containing string-related IQL functions.
 - StringFunctionTable() - 
Constructor for class uk.ac.bbk.dcs.automed.qproc.functions.string.StringFunctionTable
 -  
 - StringHash - Interface in uk.ac.ic.doc.automed.util.hashing
 - StringHash.java
 - StringHashFactory - Class in uk.ac.ic.doc.automed.util.hashing
 - StringHashProvider.java
 
 - StringHashFactory() - 
Constructor for class uk.ac.ic.doc.automed.util.hashing.StringHashFactory
 - Creates a new instance of StringHashProvider
 - stringify(Object) - 
Static method in class uk.ac.ic.doc.automed.editor.CommandLineDriver
 -  
 - StringMatcher - Interface in uk.ac.ic.doc.automed.p2p.util.matcher
 -  
 - StringMatcherFactory - Class in uk.ac.ic.doc.automed.p2p.util.matcher
 -  
 - StringMatcherFactory() - 
Constructor for class uk.ac.ic.doc.automed.p2p.util.matcher.StringMatcherFactory
 -  
 - stringSafe(String) - 
Static method in class uk.ac.ic.doc.automed.reps.Syntax
 -  
 - STRINGTOKEN - 
Static variable in interface uk.ac.bbk.dcs.automed.qproc.translators.xquery.XQuery2IQLConstants
 -  
 - stringToObject(String, Class) - 
Static method in class uk.ac.ic.doc.automed.Util
 -  
 - stringToValue(String) - 
Method in class uk.ac.ic.doc.automed.p2p.gui.expressionBuilder.TypedTextField.DoubleFormatter
 -  
 - stringValue() - 
Method in class uk.ac.ic.doc.automed.matching.modules.bidirectionalmap.ComparableString
 -  
 - stripSchemesFromExtraInformation(Cell) - 
Static method in class uk.ac.bbk.dcs.automed.xml.sca.SchemaConformanceAlgorithm
 -  
 - stripUID(String) - 
Method in class uk.ac.bbk.dcs.automed.xml.sra.old.xmldssGraph.XMLDSSRestructurer
 -  
 - stripUIDs(Document) - 
Static method in class uk.ac.bbk.dcs.automed.xml.utilities.UIDUtility
 - This method takes as input an XML document in DOM format, duplicates it, then strips the uids from the duplicated DOM.
 - STRMethodTest - Class in uk.ac.ic.doc.automed
 -  
 - STRMethodTest() - 
Constructor for class uk.ac.ic.doc.automed.STRMethodTest
 -  
 - STRTOKEN - 
Static variable in interface uk.ac.bbk.dcs.automed.qproc.annotate.grammars.schemes.SchemesConstants
 -  
 - STRTOKEN - 
Static variable in interface uk.ac.bbk.dcs.automed.qproc.annotate.grammars.simpleComp.SimpleCompConstants
 -  
 - STRTOKEN - 
Static variable in interface uk.ac.bbk.dcs.automed.qproc.annotate.grammars.simpleCompAppend.SimpleCompAppendConstants
 -  
 - STRTOKEN - 
Static variable in interface uk.ac.bbk.dcs.automed.qproc.annotate.grammars.simpleCompAppendMonus.SimpleCompAppendMonusConstants
 -  
 - STRTOKEN - 
Static variable in interface uk.ac.bbk.dcs.automed.qproc.annotate.grammars.simpleCompMember.SimpleCompMemberConstants
 -  
 - STRTOKEN - 
Static variable in interface uk.ac.bbk.dcs.automed.qproc.annotate.grammars.sql.IQLForSQLQueryParserConstants
 -  
 - StrToken - 
Static variable in class uk.ac.bbk.dcs.automed.qproc.iql.QSym
 -  
 - structure - 
Variable in class uk.ac.ic.doc.automed.p2p.protocol.model.ModelDescription
 -  
 - structure - 
Variable in class uk.ac.ic.doc.automed.p2p.protocol.model.SchemaDescription
 -  
 - SUB - 
Static variable in interface it.unibo.cs.USI.tools.SemanticMappingConstants
 -  
 - SUBCLASS_DEF - 
Static variable in class uk.ac.ic.doc.automed.wrappers.RDFSWrapperFactory
 -  
 - subclassesOfSameClass(Node, Node, Map) - 
Method in class uk.ac.bbk.dcs.automed.xml.sra.SRAInitialisationExtended
 -  
 - subClassMap - 
Variable in class uk.ac.bbk.dcs.automed.wrappers.OWLDLWrapper
 - LHS: superClass, RHS: list of direct and indirect subClasses
 - subClassOf - 
Variable in class uk.ac.ic.doc.automed.modelmanagement.modeldef.RDFSModelDef
 -  
 - subClassOf - 
Variable in class uk.ac.ic.doc.automed.wrappers.RDFSWrapperFactory
 -  
 - SubCollection - Class in uk.ac.bbk.dcs.automed.qproc.functions.collections
 -  
 - SubCollection() - 
Constructor for class uk.ac.bbk.dcs.automed.qproc.functions.collections.SubCollection
 -  
 - subCollection(Collection, int, int) - 
Static method in class uk.ac.ic.doc.automed.util.SetUtil
 -  
 - subComp() - 
Method in class uk.ac.bbk.dcs.automed.qproc.annotate.grammars.sql.IQLForSQLQueryParser
 -  
 - subGraphs - 
Variable in class uk.ac.bbk.dcs.automed.graph.DirectedGraph
 -  
 - submit(ProcessNode, String) - 
Method in class uk.ac.ic.doc.automed.p2p.util.logging.LogThread
 -  
 - submitEvent(GEventReceiver, int, GEvent) - 
Method in class uk.ac.ic.doc.automed.p2p.gui.graph.events.EventQueueManager
 - Invoked by a GUI component to raise an event
 - submitEventAndWait(int, GEvent) - 
Method in class uk.ac.ic.doc.automed.p2p.gui.graph.events.EventQueueManager
 -  
 - subnet - 
Variable in class uk.ac.ic.doc.automed.editor.PathwayTool
 -  
 - subnet_sid - 
Variable in class uk.ac.ic.doc.automed.SchemaRow
 -  
 - subnetSchema - 
Variable in class uk.ac.ic.doc.automed.reps.Schema
 -  
 - subnetsLoaded - 
Static variable in class uk.ac.ic.doc.automed.TransformationRow
 -  
 - SUBPROPERTY_DEF - 
Static variable in class uk.ac.ic.doc.automed.wrappers.RDFSWrapperFactory
 -  
 - subPropertyOf - 
Variable in class uk.ac.ic.doc.automed.modelmanagement.modeldef.RDFSModelDef
 -  
 - subPropertyOf - 
Variable in class uk.ac.ic.doc.automed.wrappers.RDFSWrapperFactory
 -  
 - subset(Proposition) - 
Method in class it.unibo.cs.belief.Proposition
 - Checks if this propositions is a subset of another one.
 - Subset - Class in uk.ac.ic.doc.automed.matching.relationships
 - The Subset class represents the subset semantic relationship
 between 
SchemaElement objects. - Subset() - 
Constructor for class uk.ac.ic.doc.automed.matching.relationships.Subset
 -  
 - subset - 
Variable in class uk.ac.ic.doc.automed.modelmanagement.modeldef.EERModelDef
 -  
 - subset - 
Variable in class uk.ac.ic.doc.automed.modelmanagement.modelgen.HDMToEER
 -  
 - subseteq - 
Variable in class uk.ac.ic.doc.automed.wrappers.ICOWLDLWrapperFactory
 -  
 - subsetOf(Set, Set) - 
Static method in class uk.ac.ic.doc.automed.util.SetUtil
 -  
 - subSteps - 
Variable in class uk.ac.bbk.dcs.automed.dataWarehousing.dlt.TransfStep
 -  
 - Substring - Class in uk.ac.bbk.dcs.automed.qproc.functions.string
 - 
 Returns a substring of the input string based on the two other integer arguments.
 - Substring() - 
Constructor for class uk.ac.bbk.dcs.automed.qproc.functions.string.Substring
 -  
 - SUBSUMES - 
Static variable in interface uk.ac.ic.doc.automed.reasoner.DIGVocabulary.Ask
 -  
 - Subsumption - Class in uk.ac.ic.doc.automed.matching.relationships
 - The Subsumption class represents the subsumption semantic relationship
 between 
SchemaElement objects. - Subsumption() - 
Constructor for class uk.ac.ic.doc.automed.matching.relationships.Subsumption
 -  
 - subsumptions - 
Variable in class uk.ac.ic.doc.automed.matching.Integrator
 -  
 - subtract(AutoMedFloat) - 
Method in class uk.ac.ic.doc.automed.wrappers.AutoMedFloat
 - Return the difference of two AutoMedFloats.
 - subtract(AutoMedInteger) - 
Method in class uk.ac.ic.doc.automed.wrappers.AutoMedInteger
 - Return the difference of two AutoMedIntegers.
 - subtractDate(Date, Date) - 
Static method in class uk.ac.ic.doc.automed.util.DateUtil
 - Subtract 
Date1 from Date2 to return the result as
 an array of numbers of hours, minutes, and seconds
 - subtractDate(Date, int) - 
Static method in class uk.ac.ic.doc.automed.util.DateUtil
 - Subtract 
Date1 from Date2 to return the result as
 an array of numbers of hours, minutes, and seconds
 - subtractDate(long, long) - 
Static method in class uk.ac.ic.doc.automed.util.DateUtil
 - Subtract 
Date1 from Date2 to return the result as
 an array of numbers of hours, minutes, and seconds
 - subtractList(List, List) - 
Static method in class uk.ac.bbk.dcs.automed.qproc.iql.IQLUtility
 - Subtract source list (srcList) from (fromList).
 - succNode(Node) - 
Method in class uk.ac.ic.doc.automed.util.graph.impl.Graph
 - Return successor node of a node
 - suffix - 
Static variable in class uk.ac.ic.doc.automed.p2p.qproc.planner.SQLableMap
 -  
 - SUFFIX_P - 
Static variable in class uk.ac.ic.doc.automed.p2p.gui.GuiConstants
 -  
 - SUFFIX_PS - 
Static variable in class uk.ac.ic.doc.automed.p2p.gui.GuiConstants
 -  
 - suggestName() - 
Method in class uk.ac.ic.doc.automed.reps.Network
 -  
 - sui - 
Variable in class uk.ac.ic.doc.automed.p2p.gui.expressionBuilder.FunctionBuilder
 -  
 - Sum - Class in uk.ac.bbk.dcs.automed.qproc.functions.aggregation
 -  
 - Sum() - 
Constructor for class uk.ac.bbk.dcs.automed.qproc.functions.aggregation.Sum
 -  
 - summary - 
Variable in class uk.ac.ic.doc.automed.editor.ReportException
 -  
 - SummativeStringHashing - Class in uk.ac.ic.doc.automed.util.hashing
 - SummativeStringHashing.java
 Implements a simple hashing function for string which is the sum 
 all ASCII codes of the all characters and the string's length - SummativeStringHashing() - 
Constructor for class uk.ac.ic.doc.automed.util.hashing.SummativeStringHashing
 - Creates a new instance of SimpleStringHashing
 - SUP - 
Static variable in interface it.unibo.cs.USI.tools.SemanticMappingConstants
 -  
 - Superset - Class in uk.ac.ic.doc.automed.matching.relationships
 - The Superset class represents the superset semantic relationship
 between 
SchemaElement objects. - Superset() - 
Constructor for class uk.ac.ic.doc.automed.matching.relationships.Superset
 -  
 - supportedAskElements - 
Variable in class uk.ac.ic.doc.automed.reasoner.DIGReasonerIdentity
 -  
 - supportedLanguageElements - 
Variable in class uk.ac.ic.doc.automed.reasoner.DIGReasonerIdentity
 -  
 - supportedModels - 
Variable in class uk.ac.bbk.dcs.automed.qproc.optimise.physicalOptimisers.ComprehensionHeadSimplifierUndoPhysicalOptimiser
 -  
 - supportedTellElements - 
Variable in class uk.ac.ic.doc.automed.reasoner.DIGReasonerIdentity
 -  
 - supportsAggregateWithDistinct - 
Variable in class uk.ac.bbk.dcs.automed.wrappers.IQL2SQLTranslator
 -  
 - supportsAskElement(String) - 
Method in class uk.ac.ic.doc.automed.reasoner.DIGReasonerIdentity
 - Determines if the specified ask element is
 supported by the inference.
 - supportsCase - 
Variable in class uk.ac.bbk.dcs.automed.wrappers.IQL2SQLTranslator
 -  
 - supportsLanguageElement(String) - 
Method in class uk.ac.ic.doc.automed.reasoner.DIGReasonerIdentity
 - Determines if the specified language element is
 supported by the inference.
 - supportsNamedQueries - 
Variable in class uk.ac.bbk.dcs.automed.wrappers.IQL2SQLTranslator
 -  
 - supportsTellElemement(String) - 
Method in class uk.ac.ic.doc.automed.reasoner.DIGReasonerIdentity
 - Determines if the specified tell element is
 supported by the inference.
 - supressedTokenTypes - 
Variable in class uk.ac.ic.doc.automed.xml.XMLReader
 -  
 - supressIgnorableWhitespace - 
Variable in class uk.ac.ic.doc.automed.xml.XMLReader
 -  
 - suspend() - 
Method in class uk.ac.ic.doc.automed.p2p.routing.Cresendo
 -  
 - sval - 
Variable in class uk.ac.ic.doc.automed.editor.Syntax.Token
 -  
 - SVAL - 
Static variable in interface uk.ac.ic.doc.automed.reasoner.DIGVocabulary.Language
 -  
 - sval - 
Variable in class uk.ac.ic.doc.automed.reps.Syntax.Token
 -  
 - svalue - 
Variable in class uk.ac.ic.doc.automed.ConstructPropertyRow
 -  
 - svalue - 
Variable in class uk.ac.ic.doc.automed.SchemaObjectPropertyRow
 -  
 - swap(int, int) - 
Method in class uk.ac.bbk.dcs.automed.qproc.functions.ModifiedArray
 -  
 - swap(LinkedList, int) - 
Static method in class uk.ac.bbk.dcs.automed.xml.wrappers.XMLDSSFromAMSchema
 -  
 - swapInternalCommas(String) - 
Method in class uk.ac.bbk.dcs.automed.hdmstore.HdmStoreCmd
 - An edge may have an edge as one of its spans.
 - swf - 
Variable in class uk.ac.bbk.dcs.automed.xml.relational.XMLDSSFromRDB
 -  
 - switchMode(int) - 
Method in class uk.ac.ic.doc.automed.p2p.editor.KQueryMain
 - Switch between GUI mode
 - SwitchTo(int) - 
Method in class uk.ac.bbk.dcs.automed.qproc.annotate.grammars.schemes.SchemesTokenManager
 -  
 - SwitchTo(int) - 
Method in class uk.ac.bbk.dcs.automed.qproc.annotate.grammars.simpleComp.SimpleCompTokenManager
 -  
 - SwitchTo(int) - 
Method in class uk.ac.bbk.dcs.automed.qproc.annotate.grammars.simpleCompAppend.SimpleCompAppendTokenManager
 -  
 - SwitchTo(int) - 
Method in class uk.ac.bbk.dcs.automed.qproc.annotate.grammars.simpleCompAppendMonus.SimpleCompAppendMonusTokenManager
 -  
 - SwitchTo(int) - 
Method in class uk.ac.bbk.dcs.automed.qproc.annotate.grammars.simpleCompMember.SimpleCompMemberTokenManager
 -  
 - SwitchTo(int) - 
Method in class uk.ac.bbk.dcs.automed.qproc.annotate.grammars.sql.IQLForSQLQueryParserTokenManager
 -  
 - SwitchTo(int) - 
Static method in class uk.ac.bbk.dcs.automed.qproc.translators.sql.SQL2IQLTokenManager
 -  
 - SwitchTo(int) - 
Method in class uk.ac.bbk.dcs.automed.qproc.translators.xquery.XQuery2IQLTokenManager
 -  
 - swrlFactory - 
Variable in class uk.ac.ic.doc.automed.reasoner.DefaultDIGRenderer
 -  
 - Symbol - Class in uk.ac.ic.doc.automed.p2p.gui.symbols
 -  
 - Symbol(Point, Dimension, Properties) - 
Constructor for class uk.ac.ic.doc.automed.p2p.gui.symbols.Symbol
 -  
 - Symbol(String, Point, Dimension, Properties) - 
Constructor for class uk.ac.ic.doc.automed.p2p.gui.symbols.Symbol
 -  
 - SYMBOL_TOKEN - 
Static variable in class uk.ac.ic.doc.automed.wrappers.AutoMedQuery
 -  
 - symbolHeight - 
Variable in class uk.ac.ic.doc.automed.editor.DrawVertex
 -  
 - symbolWidth - 
Variable in class uk.ac.ic.doc.automed.editor.DrawVertex
 -  
 - SYMBS - 
Static variable in class uk.ac.ic.doc.automed.p2p.editor.ProgressConsole
 -  
 - symmetric - 
Variable in class uk.ac.ic.doc.automed.wrappers.ICOWLDLWrapperFactory
 -  
 - syncWithRepository() - 
Static method in class uk.ac.ic.doc.automed.reps.Transformation
 -  
 - SYNONYMS - 
Static variable in interface uk.ac.ic.doc.automed.reasoner.DIGVocabulary.Response
 -  
 - syntax - 
Variable in class uk.ac.ic.doc.automed.editor.CommandLineDriver.EditorCommand
 -  
 - Syntax - Class in uk.ac.ic.doc.automed.editor
 -  
 - Syntax() - 
Constructor for class uk.ac.ic.doc.automed.editor.Syntax
 -  
 - Syntax - Class in uk.ac.ic.doc.automed.reps
 -  
 - Syntax() - 
Constructor for class uk.ac.ic.doc.automed.reps.Syntax
 -  
 - Syntax.Token - Class in uk.ac.ic.doc.automed.editor
 -  
 - Syntax.Token(int) - 
Constructor for class uk.ac.ic.doc.automed.editor.Syntax.Token
 -  
 - Syntax.Token(int, String) - 
Constructor for class uk.ac.ic.doc.automed.editor.Syntax.Token
 -  
 - Syntax.Token(double) - 
Constructor for class uk.ac.ic.doc.automed.editor.Syntax.Token
 -  
 - Syntax.Token - Class in uk.ac.ic.doc.automed.reps
 -  
 - Syntax.Token(int) - 
Constructor for class uk.ac.ic.doc.automed.reps.Syntax.Token
 -  
 - Syntax.Token(int, String) - 
Constructor for class uk.ac.ic.doc.automed.reps.Syntax.Token
 -  
 - Syntax.Token(double) - 
Constructor for class uk.ac.ic.doc.automed.reps.Syntax.Token
 -  
 - Syntax.Tokenizer - Class in uk.ac.ic.doc.automed.editor
 -  
 - Syntax.Tokenizer(Reader) - 
Constructor for class uk.ac.ic.doc.automed.editor.Syntax.Tokenizer
 -  
 - Syntax.Tokenizer - Class in uk.ac.ic.doc.automed.reps
 -  
 - Syntax.Tokenizer(Reader) - 
Constructor for class uk.ac.ic.doc.automed.reps.Syntax.Tokenizer
 -  
 - syntaxChecking - 
Static variable in class uk.ac.ic.doc.automed.reps.Transformation
 -  
 - SyntaxException - Exception in uk.ac.ic.doc.automed.editor
 -  
 - SyntaxException(String, int) - 
Constructor for exception uk.ac.ic.doc.automed.editor.SyntaxException
 -  
 - SyntaxException - Exception in uk.ac.ic.doc.automed.reps
 -  
 - SyntaxException(String) - 
Constructor for exception uk.ac.ic.doc.automed.reps.SyntaxException
 -  
 - SyntaxException(String, Exception) - 
Constructor for exception uk.ac.ic.doc.automed.reps.SyntaxException
 -  
 - SyntaxException(String, int, String, String) - 
Constructor for exception uk.ac.ic.doc.automed.reps.SyntaxException
 -  
 - syntheticOn - 
Variable in class uk.ac.bbk.dcs.automed.xml.sra.SchemaRestructuringAlgorithm
 -  
 - synthSuffix - 
Static variable in class uk.ac.bbk.dcs.automed.xml.XMLConstants
 -  
 - SysConsToken - 
Static variable in class uk.ac.bbk.dcs.automed.qproc.iql.QSym
 -  
 - system - 
Static variable in class uk.ac.ic.doc.automed.editor.Syntax.Token
 -  
 - SYSTEM - 
Static variable in class uk.ac.ic.doc.automed.editor.UserActionClass
 -  
 - systemID - 
Variable in class uk.ac.ic.doc.automed.xml.XMLToken
 -  
 - SYSVARTOKEN - 
Static variable in interface uk.ac.bbk.dcs.automed.qproc.annotate.grammars.simpleComp.SimpleCompConstants
 -  
 - SYSVARTOKEN - 
Static variable in interface uk.ac.bbk.dcs.automed.qproc.annotate.grammars.simpleCompAppend.SimpleCompAppendConstants
 -  
 - SYSVARTOKEN - 
Static variable in interface uk.ac.bbk.dcs.automed.qproc.annotate.grammars.simpleCompAppendMonus.SimpleCompAppendMonusConstants
 -  
 - SYSVARTOKEN - 
Static variable in interface uk.ac.bbk.dcs.automed.qproc.annotate.grammars.simpleCompMember.SimpleCompMemberConstants
 -  
 - SYSVARTOKEN - 
Static variable in interface uk.ac.bbk.dcs.automed.qproc.annotate.grammars.sql.IQLForSQLQueryParserConstants
 -  
 - SysVarToken - 
Static variable in class uk.ac.bbk.dcs.automed.qproc.iql.QSym
 -  
   requestPeerSchemaAssociations(String peer, String schema) by a peer
TML in a
 TempPathway.ExecuteGraphCommand.actionPerformed(java.awt.event.ActionEvent).
Transformation in TML notation.LinkedList of edge elements and convert to an ASG
LinkedList of edge elements and convert to an ASG 
 If  is true return elements as a list, otherwise as a tuple
 (so that the ASG returned is a list of tuples)
AutoMedIntegerType array to integer
Pathway in a form that may rendered by
 the hdm.sty LaTeX package.
SchemaObject in a form that may rendered by the hdm.sty
 LaTeX package.
#getSchemeString(boolean) instead
SchemaElement object.
ASG.toString(), but schemes has an OBID suffix.
IQL2SQLTranslator objects during incremental evaluation of query
Iterator instance of this result set so that we can
 
 manipulate it
Construct.CLASS_ALTERNATION
Construct.CLASS_SEQUENCE
uk.ac.ic.doc.automed.reps package.UncertainSchemaElementPair object.
UncertainSchemaElementPair object.
Schema (su) containing the union of
 SchemaObjects in this schema (s1) and the schema
 passed as a parameter (s2).
SchemaObject array containing the union by name between
 this schema (s1) and the schema passed as a parameter (s2).
SchemaObject in the schema
 is named.
ReformulationUtility.updateSchemeInfo(SchemeInfo, Schema).
QueryAnnotationProviderStandard.targetsCovered does not contain T, this method: (a) retrieves the wrapper W that can
 access the data source of T (b) updates QueryAnnotationProviderStandard.wrapperSchemaMap and QueryAnnotationProviderStandard.targetsCovered
#read()
qproc.cache.answerable - boolean value
 indicating whether or not
 
 a query is answerable from some query cache
 
  qproc.cache.item.metadata - Object indicating
 a metadata of
 
 a cache item
 
  network.socket.timeout - boolean value
 indicating whether or not
 
 a query is answerable from some query cache
 
 
 
 
reduce_goto table.
reduce_goto table.
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