Journals
L.Maier-Hein, S. Vedula, S. Speidel, N. Navab, R. Kikinis, A. Park, M. Eisenmann, H. Feussner, G. Forestier, S. Giannarou, M. Hashizume, D. Katic, H. Kenngott, M. Kranzfelder, A. Malpani, K. März, T. Neumuth, N. Padoy, C. Pugh, N. Schoch, D. Stoyanov, R. Taylor, M. Wagner, G. D. Hager, P. Jannin, Surgical Data Science: Enabling next-generation surgery, arXiv:1701.06482, 2017
S. Giannarou, M. Ye, G. Gras, K. Leibrandt, H.J. Marcus, G.Z.Yang, 2016, Vision-based deformation recovery for intraoperative force estimation of tool-tissue interaction for neurosurgery, International Journal of Computer Assisted Radiology and Surgery (IJCARS), Vol: 11, pp: 929-936, 2016 PDF
M. Ye, S. Giannarou, A. Meining, G.Z Yang, “Online Tracking and Retargeting with Applications to Optical Biopsy in Gastrointestinal Endoscopic Examinations”, Medical Image Analysis, Vol: 30, pp: 144-157, 2016 PDF
L. Zhao, S. Giannarou, S.L Lee, G.Z Yang, 2016, “SCEM+: Real-Time Robust Simultaneous Catheter and Environment Modeling for Endovascular Navigation”, IEEE Robotics and Automation Letters, Vol: 1, Pages: 961-968, 2016 PDF
E. Vander Poorten, P. Tran, A. Devreker, C. Gruijthuijsen, S. Portoles-Diez, G. Smoljkic, V. Strbac, N. Famaey, D. Reynaerts, J. Vander Sloten, A. Tibebu, B. Yu, C. Rauch, F. Bernard, Y. Kassahun, JH. Metzen, S. Giannarou, L. Zhao, S. Lee, G. Yang, E. Mazomenos, P. Chang, D. Stoyanov, M. Kvasnytsia, J. Van Deun, E. Verhoelst, M. Sette, A. Di Iasio, G Leo, F. Hertner, D. Scherly, L. Chelini, N. Häni, D. Seatovic, B. Rosa, H. De Praetere, P. Herijgers, “Cognitive AutonomouS CAtheters Operating in Dynamic Environments”, Journal of Medical Robotics Research, Pages: 1640011-1640011, 2016
Y. Kassahun, B. Yu, A. Tibebu, D.Stoyanov, S. Giannarou, J. H. Metzen, E. Vander Poorten, “Surgical Robotics Beyond Enhanced Dexterity Instrumentation: A survey of the machine learning techniques and their role in intelligent and autonomous surgical actions”, International Journal of Computer Assisted Radiology and Surgery (IJCARS), Vol: 11, pp: 553-568, 2016
G. Keir, A.Nair, S. Giannarou, G.-Z. Yang, P. Oldershaw, S. Wort, P. Macdonald, D. Hansell, A. Wells, “Pulmonary vasospasm in systemic sclerosis: noninvasive techniques for detection”, Pulmonary Circulation, Vol. 5, No. 3, pp. 498-505, 2015
M. Shen, S. Giannarou, G.-Z. Yang, “Robust Camera Localisation with Depth Reconstruction for Bronchoscopic Navigation”, International Journal of Computer Assisted Radiology and Surgery (IJCARS), 2015 PDF
S. Giannarou, M. Visentini-Scarzanella, G.Z Yang, “Probabilistic Tracking of Affine-Invariant Anisotropic Regions”, IEEE Trans. Pattern Anal. Machine Intell., 35 (1), pp. 130-143, 2013 PDF
S.J. Copley, S. Giannarou, V.J. Schmid, D.M. Hansell, A.U. Wells, G.Z. Yang, “Effect of Ageing on Lung Microstructure in vivo: Assessment with Densitometric and Textural Analysis of High resolution CT Data” Journal of Thoracic Imaging, 27 (6), 366-371 2012
S. Giannarou, T. Stathaki, "Optimal Edge Detection Using Multiple Operators for Image Understanding", EURASIP Journal on Advances in Signal Processing, pp. 1-19, 2011 PDF
S.L. Lee, M. Lerotic, V. Vitiello, S. Giannarou, K.W Kwok, M. Visentini-Scarzanella, G.Z Yang, “From Medical Images to Minimally Invasive Intervention: Computer Assistance for Robotic Surgery”, Computerized Medical Imaging and Graphics (CMIG), 34 (1), pp. 33-45, 2010
Conferences
S. Giannarou, G. Gras, G.Z Yang “Dynamic Tissue Surface Geometry Reconstruction for Autonomous Microscopic Tissue Scanning During Tumour Resection”, Hamlyn Symposium on Medical Robotics, 2017 (under review) PDF
M. Ye, L. Zhang, S. Giannarou, G.Z. Yang. “Real-Time 3D Tracking of Articulated Tools for Robotic Surgery”, Medical Image Computing and Computer Assisted Intervention (MICCAI) 2016
L. Zhao, S. Giannarou, S.L Lee, G.Z Yang, “Registration-free simultaneous catheter and environment modelling, Medical Image Computing and Computer Assisted Intervention (MICCAI) 2016
S. Giannarou, C. Gruijthuijsen, G.Z. Yang, “Modeling and Recognition of Ongoing Surgical Gestures in TAVI Procedures”, Workshop on Modeling and Monitoring of Computer Assisted Interventions (M2CAI), International Conference on Medical Image Computing and Computer Assisted Intervention (MICCAI), Sept 2014
M. Ye, E. Johns, S. Giannarou, G.Z. Yang. “Online Scene Association for Endoscopic Navigation”, Medical Image Computing and Computer Assisted Intervention (MICCAI), Sept 2014
C. Shi, S. Giannarou, S.Lee, and G.Z Yang, “Simultaneous Catheter and Environment Modeling for Trans-catheter Aortic Valve Implantation”, IEEE/RSJ International Conference on Intelligent Robots and Systems (IROS), Sept 2014
C. Shi, S. Giannarou, S.Lee, and G.Z Yang, “Intravascular Modelling and Navigation for Transcatheter Aortic Valve Implantation”, 3rd Joint Workshop on New Technologies for Computer/Robot Assisted Surgery (CRAS), Sept 2013
A. Vandini, S. Giannarou, S.L Lee, G.Z Yang, “3D Robotic Catheter Shape Reconstruction and Localisation using Appearance Priors and Adaptive C-arm Positioning”, International Workshop on Medical Imaging and Augmented Reality (MIAR), pp. 172-181, Sept 2013
M. Ye, S. Giannarou, N. Patel, J. Teare, G.Z Yang, “Pathological Site Retargeting under Tissue Deformation using Geometrical Association and Tracking”, International Conference on Medical Image Computing and Computer Assisted Intervention (MICCAI), pp. 67-74, Sept 2013
S. Giannarou, Zhiqiang Zhang, G.Z Yang, “Deformable Structure From Motion by Fusing Visual and Inertial Measurement Data”, IEEE/RSJ International Conference on Intelligent Robots and Systems (IROS), pp.4816-4821, Oct 2012
S. Giannarou, Zhiqiang Zhang, G.Z Yang, “Fusion of Visual and Inertial Measurements for 3D Tissue Reconstruction in Minimally Invasive Surgery”, Hamlyn Symposium on Medical Robotics, June 2012
S. Giannarou, G.Z Yang, “Tissue Deformation Recovery with Gaussian Mixture Model Based Structure from Motion”, Workshop on Augmented Environments in Computer-Assisted Interventions (AE-CAI), International Conference on Medical Image Computing and Computer Assisted Intervention (MICCAI), pp. 47-57, Sept 2011
S. Giannarou, G.Z Yang, “3D Tissue Deformation Recovery for Minimally Invasive Surgery”, Hamlyn Symposium on Medical Robotics, June 2011
S. Giannarou, G.Z Yang, “Content-Based Surgical Workflow Representation Using Probabilistic Motion Modeling”, International Workshop on Medical Imaging and Augmented Reality (MIAR), pp. 314-323, Sept 2010
S. Giannarou, D. Elson, G.Z Yang, “Tracking of spectroscopic and microscopic optical probes in endoscopy using the endoscope image field”, Workshop on Optical Tissue Image Analysis in Microscopy, Histopathology and Endoscopy (OPTIMHisE), International Conference on Medical Image Computing and Computer Assisted Intervention (MICCAI), Sept 2009
P. Mountney, S. Giannarou, D. Elson, G.Z Yang “Optical Biopsy Mapping for Minimally Invasive Cancer Screening”, International Conference on Medical Image Computing and Computer Assisted Intervention (MICCAI), pp. 483-490, Sept 2009
S. Atasoy, B. Glocker, S. Giannarou, D. Mateus, A. Meining, G.Z Yang, N. Navab, “Probabilistic Region Matching in Narrow-Band Endoscopy for Targeted Optical Biopsy”, International Conference on Medical Image Computing and Computer Assisted Intervention (MICCAI), pp. 499-506, Sept 2009
A. Skodras, S. Giannarou, M. Fenwick, S. Franks, J. Stark, K. Hardy, ” Object recognition in the ovary: quantification of oocytes from microscopic images” IEEE International Conference on Digital Signal Processing (DSP 2009), pp. 1-6, July 2009
S. Giannarou, M. Visentini-Scarzanella, G.Z Yang, “Affine-Invariant Anisotropic Detector for Soft Tissue Tracking in Minimally Invasive Surgery”, International Symposium of Biomedical Imaging (ISBI), pp. 1059-1062, June 2009
S. Giannarou, T. Stathaki, “Shape Signature Matching for Object Identification Invariant to Image Transformations and Occlusion", International Conference on Computer Analysis of Images and Patterns (CAIP), pp. 710-717, August 2007
S. Giannarou, T. Stathaki, "Object Identification in Complex Scenes Using Shape Context Descriptors and Multi-Stage Clustering" IEEE International Conference on Digital Signal Processing (DSP 2007), pp. 244-247, July 2007
S. Giannarou, T. Stathaki, "Novel statistical approaches to the quantitative combination of multiple edge detectors", International Conference on Image Analysis and Recognition (ICIAR), pp. 184-195, September 2006
S. Giannarou, T. Stathaki, "Edge detection using quantitative combination of multiple operators", IEEE Workshop on Signal Processing Systems (SiPs), pp. 359-364, November 2005