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C

case1(String, ProvenanceServer) - Static method in class eu.transformproject.provenance.test.ProvenanceIterativeStorage
 
case1(String, ProvenanceServer) - Static method in class eu.transformproject.provenance.test.ProvenanceIterativeStorage_old
 
case2(String, ProvenanceServer) - Static method in class eu.transformproject.provenance.test.ProvenanceIterativeStorage
 
case2(String, ProvenanceServer) - Static method in class eu.transformproject.provenance.test.ProvenanceIterativeStorage_old
 
case3(String, ProvenanceServer) - Static method in class eu.transformproject.provenance.test.ProvenanceIterativeStorage
 
CENTRAL_ZONE_TAG - Static variable in interface eu.transformproject.provenance.service.ProvenanceConfigInterface
 
CentralProvenanceStore - Class in eu.transformproject.provenance.service
Provides the functionality for a central provenance store server configuration.
ClassSpecif - Class in eu.transformproject.provenance.utils
 
ClassSpecif() - Constructor for class eu.transformproject.provenance.utils.ClassSpecif
 
ClassUtils - Class in eu.transformproject.provenance.utils
 
ClassUtils() - Constructor for class eu.transformproject.provenance.utils.ClassUtils
 
clone(OPMEntity) - Static method in class eu.transformproject.provenance.opm.factory.OPMFactory
Clone.
clone(OPMEntity, HashMap<OPMEntity, OPMEntity>) - Static method in class eu.transformproject.provenance.opm.factory.OPMFactory
Clone.
clone(OPMEntityType) - Static method in class eu.transformproject.provenance.opm.factory.OPMFactory
Clone.
cloneAccount(OPMAccount, HashMap<OPMEntity, OPMEntity>) - Static method in class eu.transformproject.provenance.opm.factory.OPMFactory
Clone account.
cloneAgent(OPMAgent, HashMap<OPMEntity, OPMEntity>) - Static method in class eu.transformproject.provenance.opm.factory.OPMFactory
Clone agent.
cloneAnnotation(OPMAnnotation, HashMap<OPMEntity, OPMEntity>) - Static method in class eu.transformproject.provenance.opm.factory.OPMFactory
Clone annotation.
cloneAnnotationOf(OPMEntity, OPMAnnotation) - Static method in class eu.transformproject.provenance.opm.factory.OPMFactory
Clone annotation of.
cloneArtifact(OPMArtifact, HashMap<OPMEntity, OPMEntity>) - Static method in class eu.transformproject.provenance.opm.factory.OPMFactory
Clone artifact.
cloneDependence(OPMDependence) - Static method in class eu.transformproject.provenance.opm.factory.OPMFactory
Clone dependence.
cloneDependence(OPMDependence, HashMap<OPMEntity, OPMEntity>) - Static method in class eu.transformproject.provenance.opm.factory.OPMFactory
Clone dependence.
cloneGraph(OPMGraph, HashMap<OPMEntity, OPMEntity>) - Static method in class eu.transformproject.provenance.opm.factory.OPMFactory
Clone graph.
cloneGraph(OPMGraph, HashSet<OPMEntity>) - Static method in class eu.transformproject.provenance.opm.factory.OPMFactory
Clone graph.
cloneOPMEntity(OPMEntity, HashMap<OPMEntity, OPMEntity>) - Static method in class eu.transformproject.provenance.opm.factory.OPMFactory
Clone opm entity.
cloneProcess(OPMProcess, HashMap<OPMEntity, OPMEntity>) - Static method in class eu.transformproject.provenance.opm.factory.OPMFactory
Clone process.
closeFileWriter() - Method in class eu.transformproject.provenance.service.ProvenanceServer
 
closeSession() - Method in interface eu.transformproject.provenance.representation.commonItInstantiation.CommomInstantiationInterface
Close a session.
closeSession() - Method in class eu.transformproject.provenance.representation.commonItInstantiation.CommonInstantiation
 
closeSession() - Method in class eu.transformproject.provenance.storage.ProvenancePersistenceManager
 
COLORS - Static variable in class eu.transformproject.provenance.opm.factory.OPMFactory
 
commitInstance() - Method in class eu.transformproject.provenance.representation.OPMGraphInstantiationSpec
 
commitInstance(OPMGraph, String) - Method in class eu.transformproject.provenance.representation.OPMGraphInstantiationSpec
 
commitInstance() - Method in class eu.transformproject.provenance.representation.TemplateDeploySpec
 
commitInstance(OPMGraph) - Method in class eu.transformproject.provenance.representation.TemplateDeploySpec
 
commitInstance(OPMGraph, InstantiationDesc) - Method in class eu.transformproject.provenance.representation.TemplateDeploySpec
 
CommomInstantiationInterface - Interface in eu.transformproject.provenance.representation.commonItInstantiation
 
CommonInstantiation - Class in eu.transformproject.provenance.representation.commonItInstantiation
 
CommonInstantiation(String, String, boolean) - Constructor for class eu.transformproject.provenance.representation.commonItInstantiation.CommonInstantiation
 
completed() - Method in class eu.transformproject.provenance.representation.TemplateDeploymentDesc
 
completeValidation() - Method in class eu.transformproject.provenance.reasoning.ProvenanceReasoning
 
composeAnnotation(String, String) - Method in class eu.transformproject.provenance.service.ProvenanceServer
 
composeAnnotation(String, String) - Method in interface eu.transformproject.provenance.service.ProvenanceStorageInterface
Create an AnnotationSet object, initialising it with the annotation defined by the pair: owl_prop, value.
composeAnnotation(String, String) - Method in class eu.transformproject.provenance.storage.ProvenancePersistenceManager
 
CONDITIONS_PLACEHOLDER - Static variable in class eu.transformproject.provenance.query.ProvenanceQueryBasic
 
ConfigReader - Class in eu.transformproject.provenance.utils
 
ConfigReader_old - Class in eu.transformproject.provenance.utils
 
containsClass(String) - Method in class eu.transformproject.provenance.reasoning.AbstractOnto
 
containsClass(String) - Method in class eu.transformproject.provenance.reasoning.inProvStore.UpdatableOntoInProvStore
 
containsClass(String) - Method in class eu.transformproject.provenance.reasoning.Onto
 
containsdependenceWith(OPMEntityNode, OPMEntityNode) - Static method in class eu.transformproject.provenance.opm.utils.OPMEntityHelper
 
containsEdge(OPMEntityNode, OPMEntityNode) - Method in class eu.transformproject.provenance.representation.OPMGraphTemplate
 
containsProperty(String) - Method in class eu.transformproject.provenance.reasoning.AbstractOnto
 
containsProperty(String) - Method in class eu.transformproject.provenance.reasoning.inProvStore.UpdatableOntoInProvStore
 
containsProperty(String) - Method in class eu.transformproject.provenance.reasoning.Onto
 
convertToOPMAnnotations(OPMEntity, AnnotationSet, Ontologies) - Static method in class eu.transformproject.provenance.opm.factory.OPMFactory
Convert to opm annotations.
copyfile(String, String) - Static method in class eu.transformproject.provenance.utils.ProvSytemUtils
 
copyfile(InputStreamReader, String) - Static method in class eu.transformproject.provenance.utils.ProvSytemUtils
 
copyfile(String, String) - Static method in class eu.transformproject.provenance.utils.ProvSytemUtils_old
 
copyfile(InputStreamReader, String) - Static method in class eu.transformproject.provenance.utils.ProvSytemUtils_old
 
copyStrfile(String, String) - Static method in class eu.transformproject.provenance.utils.ProvSytemUtils
 
copyStrfile(String, String, HashMap<String, String>) - Static method in class eu.transformproject.provenance.utils.ProvSytemUtils
 
copyStrfile(Reader, String, HashMap<String, String>) - Static method in class eu.transformproject.provenance.utils.ProvSytemUtils
 
copyStrfile(String, String) - Static method in class eu.transformproject.provenance.utils.ProvSytemUtils_old
 
copyStrfile(String, String, HashMap<String, String>) - Static method in class eu.transformproject.provenance.utils.ProvSytemUtils_old
 
copyStrfile(Reader, String, HashMap<String, String>) - Static method in class eu.transformproject.provenance.utils.ProvSytemUtils_old
 
createAndAnswerQuery(Date, Date, String, int, List) - Method in class eu.transformproject.provenance.ws.ProvenanceWS_DataQualityTool
 
createAndAnswerQuery(Date, Date, String, int, List) - Method in interface eu.transformproject.provenance.ws.ProvenanceWS_DataQualityTool_Interface
createAndAnswerQuery.
createAnnotation(OPMEntity, Property, String) - Static method in class eu.transformproject.provenance.opm.factory.OPMFactory
Creates a new OPM object.
createCausalDependence(OPMEntityNode, OPMEntityNode) - Method in class eu.transformproject.provenance.storage.ProvenancePersistenceManager
 
createCentralProvenanceZone(String) - Static method in class eu.transformproject.provenance.service.ProvenanceAdmin
 
createCentralProvenanceZone(CentralProvenanceStore) - Static method in class eu.transformproject.provenance.service.ProvenanceAdmin
 
createCentralProvenanceZone(String) - Method in class eu.transformproject.provenance.storage.ProvenanceDBStorage
 
createCentralProvenanceZone(CentralProvenanceStore) - Method in class eu.transformproject.provenance.storage.ProvenanceDBStorage
 
createDataExtraction(Object, Date) - Method in class eu.transformproject.provenance.ws.ProvenanceWS_QueryTool
 
createDataExtraction(Object, Date) - Method in interface eu.transformproject.provenance.ws.ProvenanceWS_QueryTool_Interface
createDataExtraction.
createDependence(OPMEntityNode, OPMEntityNode) - Static method in class eu.transformproject.provenance.opm.factory.OPMFactory
Creates a new OPM object.
createDependence(OPMEntityNode, OPMEntityNode, String, String, boolean) - Static method in class eu.transformproject.provenance.opm.factory.OPMFactory
Creates a new OPM object.
createDependence(OPMEntityNode, OPMEntityNode, String, String, OPMDependenceType, OPMEntityType) - Static method in class eu.transformproject.provenance.opm.factory.OPMFactory
Creates a new OPM object.
createDependence(OPMEntityNode, OPMEntityNode, String, String, OPMDependenceType, OPMEntityType, boolean) - Static method in class eu.transformproject.provenance.opm.factory.OPMFactory
Creates a new OPM object.
createDependenceType(DependenceType) - Static method in class eu.transformproject.provenance.opm.factory.OPMFactory
Creates a new OPM object.
createdNewOPMEntity() - Method in class eu.transformproject.provenance.representation.TemplateDeploySpec
 
createEC(Object, Date) - Method in class eu.transformproject.provenance.ws.ProvenanceWS_QueryTool
 
createEC(Object, Date) - Method in interface eu.transformproject.provenance.ws.ProvenanceWS_QueryTool_Interface
createEC.
createEntityType(EntityType) - Static method in class eu.transformproject.provenance.opm.factory.OPMFactory
Creates a new OPM object.
createGraph(String) - Method in class eu.transformproject.provenance.storage.ProvenanceDBStorage
 
createInitScript() - Method in class eu.transformproject.provenance.service.ProvenanceStore
 
createLocalProvenanceZone(String) - Static method in class eu.transformproject.provenance.service.ProvenanceAdmin
 
createLocalProvenanceZone(String, int) - Static method in class eu.transformproject.provenance.service.ProvenanceAdmin
 
createLocalProvenanceZone(ProvenanceStore, String) - Static method in class eu.transformproject.provenance.service.ProvenanceAdmin
 
createLocalProvenanceZone(String) - Method in class eu.transformproject.provenance.storage.ProvenanceDBStorage
 
createLocalProvenanceZone(String, int) - Method in class eu.transformproject.provenance.storage.ProvenanceDBStorage
 
createLocalProvenanceZone(ProvenanceStore, String) - Method in class eu.transformproject.provenance.storage.ProvenanceDBStorage
 
createNewQueryEC() - Method in class eu.transformproject.provenance.ws.ProvenanceWS_QueryTool
 
createNewQueryEC() - Method in interface eu.transformproject.provenance.ws.ProvenanceWS_QueryTool_Interface
createNewQueryEC.
createOntology(String, String, String) - Static method in class eu.transformproject.provenance.opm.factory.OPMFactory
Creates a new OPM object.
createOPMAccount(String, String) - Static method in class eu.transformproject.provenance.opm.factory.OPMFactory
Creates a new OPM object.
createOPMAccount(String, String, OPMEntityType) - Static method in class eu.transformproject.provenance.opm.factory.OPMFactory
Creates a new OPM object.
createOPMAgent(String, String) - Static method in class eu.transformproject.provenance.opm.factory.OPMFactory
Creates a new OPM object.
createOPMAgent(String, String, OPMEntityType) - Static method in class eu.transformproject.provenance.opm.factory.OPMFactory
 
createOPMAnnotation(String, String) - Static method in class eu.transformproject.provenance.opm.factory.OPMFactory
Creates a new OPM object.
createOPMAnnotation(String, String, OPMEntityType) - Static method in class eu.transformproject.provenance.opm.factory.OPMFactory
Creates a new OPM object.
createOPMArtifact(String, String) - Static method in class eu.transformproject.provenance.opm.factory.OPMFactory
Creates a new OPM object.
createOPMArtifact(String, String, OPMEntityType) - Static method in class eu.transformproject.provenance.opm.factory.OPMFactory
 
createOPMEntity(String, String, String, AnnotationSet, Ontologies) - Static method in class eu.transformproject.provenance.opm.factory.OPMFactory
Creates a new OPM object.
createOPMEntity(String, String, String) - Static method in class eu.transformproject.provenance.opm.factory.OPMFactory
Creates a new OPM object.
createOPMEntity(String, String) - Static method in class eu.transformproject.provenance.opm.factory.OPMFactory
Creates a new OPM object.
createOPMEntity(String) - Static method in class eu.transformproject.provenance.opm.factory.OPMFactory
Creates a new OPM object.
createOPMEntity(EntityType, String, String) - Static method in class eu.transformproject.provenance.opm.factory.OPMFactory
Creates a new OPM object.
createOPMEntity(OPMEntityType, String, String) - Static method in class eu.transformproject.provenance.opm.factory.OPMFactory
Creates a new OPM object.
createOPMEntity(EntityType, String) - Static method in class eu.transformproject.provenance.opm.factory.OPMFactory
Creates a new OPM object.
createOPMEntity(OPMEntityType, String) - Static method in class eu.transformproject.provenance.opm.factory.OPMFactory
Creates a new OPM object.
createOPMEntity(EntityType) - Static method in class eu.transformproject.provenance.opm.factory.OPMFactory
Creates a new OPM object.
createOPMEntity(OPMEntityType) - Static method in class eu.transformproject.provenance.opm.factory.OPMFactory
Creates a new OPM object.
createOPMEntity(EntityType, String, String, AnnotationSet, Ontologies) - Static method in class eu.transformproject.provenance.opm.factory.OPMFactory
Creates a new OPM object.
createOPMEntity(EntityType, String, String, AnnotationSet, Ontologies, OPMEntityType) - Static method in class eu.transformproject.provenance.opm.factory.OPMFactory
Creates a new OPM object.
createOPMGraph(String, String) - Static method in class eu.transformproject.provenance.opm.factory.OPMFactory
Creates a new OPM object.
createOPMGraph(String, String, OPMEntityType) - Static method in class eu.transformproject.provenance.opm.factory.OPMFactory
Creates a new OPM object.
createOPMGraph() - Static method in class eu.transformproject.provenance.opm.factory.OPMFactory
Creates a new OPM object.
createOPMProcess(String, String) - Static method in class eu.transformproject.provenance.opm.factory.OPMFactory
Creates a new OPM object.
createOPMProcess(String, String, OPMEntityType) - Static method in class eu.transformproject.provenance.opm.factory.OPMFactory
 
createProcessStatus(String, String) - Static method in class eu.transformproject.provenance.opm.factory.OPMFactory
Creates a new OPM object.
createProperty(Ontology, String) - Static method in class eu.transformproject.provenance.opm.factory.OPMFactory
Creates a new OPM object.
createProtocol(Object, Date) - Method in class eu.transformproject.provenance.ws.ProvenanceWS_QueryTool
 
createProtocol(Object, Date) - Method in interface eu.transformproject.provenance.ws.ProvenanceWS_QueryTool_Interface
createProtocol.
createProvenance() - Method in class eu.transformproject.provenance.service.ProvenanceStore
 
createProvenanceTemplate(ProvenanceExportFormat, String, String) - Static method in class eu.transformproject.provenance.representation.ProvenanceRepresentation
 
createProvenanceTemplate(String, String) - Static method in class eu.transformproject.provenance.representation.ProvenanceRepresentation
 
createProvenanceZones(String) - Static method in class eu.transformproject.provenance.service.ProvenanceAdmin
 
createProvenanceZones(String) - Method in class eu.transformproject.provenance.storage.ProvenanceDBStorage
 
createRootConfigElement(Document) - Method in class eu.transformproject.provenance.service.CentralProvenanceStore
 
createRootConfigElement(Document) - Method in class eu.transformproject.provenance.service.LocalProvenanceStore
 
createRootConfigElement(Document) - Method in class eu.transformproject.provenance.service.ProvenanceStore
 
createSession(Object, String, String, Date) - Method in interface eu.transformproject.provenance.representation.commonItInstantiation.CommomInstantiationInterface
Create a session.
createSession(Object, String, String, Date) - Method in class eu.transformproject.provenance.representation.commonItInstantiation.CommonInstantiation
 
createStudy(String, Object, Date) - Method in class eu.transformproject.provenance.ws.ProvenanceWS_QueryTool
 
createStudy(String, Object, Date) - Method in interface eu.transformproject.provenance.ws.ProvenanceWS_QueryTool_Interface
createStudy.
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