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S

saveConfig() - Method in class eu.transformproject.provenance.service.ProvenanceStore
 
saveD2RQ() - Method in class eu.transformproject.provenance.service.ProvenanceStore
 
saveDBScript() - Method in class eu.transformproject.provenance.service.ProvenanceStore
 
saveQuery(String, Date, Date) - Method in class eu.transformproject.provenance.ws.ProvenanceWS_DataQualityTool
 
saveQuery(String, Date, Date) - Method in interface eu.transformproject.provenance.ws.ProvenanceWS_DataQualityTool_Interface
saveQuery.
saveQueryResult(String, Date, Date) - Method in class eu.transformproject.provenance.ws.ProvenanceWS_DataQualityTool
 
saveQueryResult(String, Date, Date) - Method in interface eu.transformproject.provenance.ws.ProvenanceWS_DataQualityTool_Interface
saveQueryResult.
sendData(String, String) - Method in interface eu.transformproject.provenance.representation.commonItInstantiation.CommomInstantiationInterface
Send an encrypted data.
sendData(String, String) - Method in class eu.transformproject.provenance.representation.commonItInstantiation.CommonInstantiation
 
sendData(String, String) - Method in class eu.transformproject.provenance.ws.ProvenanceWS_DataConnectorTool
 
sendData(String, String) - Method in class eu.transformproject.provenance.ws.ProvenanceWS_MiddlewareTool
 
sendData(String, String) - Method in class eu.transformproject.provenance.ws.ProvenanceWS_QueryTool
 
SERIE_GROUP - Static variable in class eu.transformproject.provenance.representation.TemplateGroupExecutionSpec
 
server - Variable in class eu.transformproject.provenance.representation.commonItInstantiation.CommonInstantiation
 
set(String, int, String, Object) - Method in class eu.transformproject.provenance.representation.OPMGraphIterativeInstantiation
 
set(String, String, Object) - Method in class eu.transformproject.provenance.representation.OPMGraphIterativeInstantiation
 
set(String, Object) - Method in class eu.transformproject.provenance.representation.OPMGraphIterativeInstantiation
 
setAnnotations(String, String, AnnotationSet) - Method in class eu.transformproject.provenance.representation.OPMGraphIterativeInstantiation
 
setAnnotations(String, AnnotationSet) - Method in class eu.transformproject.provenance.representation.OPMGraphIterativeInstantiation
 
setCause(OPMEntityNode) - Method in class eu.transformproject.provenance.opm.OPMDependence
 
setCurrentGraph(String) - Method in class eu.transformproject.provenance.service.ProvenanceServer
 
setCurrentGraph(String) - Method in interface eu.transformproject.provenance.service.ProvenanceStorageInterface
Specify that all the new entity definitions belong to the OPM graph with URI idGraph.
setCurrentGraph(String) - Method in class eu.transformproject.provenance.storage.ProvenancePersistenceManager
 
setCurrGroup(String, String) - Method in class eu.transformproject.provenance.representation.OPMGraphIterativeInstantiation
 
setCurrGroup(String, String, int) - Method in class eu.transformproject.provenance.representation.OPMGraphIterativeInstantiation
 
setCurrTemplateInstantiation(String, int) - Method in class eu.transformproject.provenance.representation.OPMGraphIterativeInstantiation
 
setDbServerUrl(String) - Method in class eu.transformproject.provenance.service.ProvenanceStore
 
setDelimiter(String, boolean) - Method in class eu.transformproject.provenance.utils.DBScriptRunner
 
setDependence(OPMDependence) - Method in class eu.transformproject.provenance.representation.LinkDeploymentDesc
Sets the dependence.
setDeployment1(TemplateDeploymentDesc) - Method in class eu.transformproject.provenance.representation.EqualDeploymentDesc
 
setDeployment2(TemplateDeploymentDesc) - Method in class eu.transformproject.provenance.representation.EqualDeploymentDesc
 
setDeploymentCause(TemplateDeploymentDesc) - Method in class eu.transformproject.provenance.representation.LinkDeploymentDesc
Sets the deployment cause.
setDeploymentEffect(TemplateDeploymentDesc) - Method in class eu.transformproject.provenance.representation.LinkDeploymentDesc
Sets the deployment effect.
setDescr(String) - Method in class eu.transformproject.provenance.service.ProvenanceStore
 
setEffect(OPMEntityNode) - Method in class eu.transformproject.provenance.opm.OPMDependence
 
setEntity(OPMEntityNode) - Method in class eu.transformproject.provenance.representation.EqualDeploymentDesc
 
setEqualInPrevIteration(OPMEntityNode, OPMEntityNode) - Method in class eu.transformproject.provenance.representation.TemplateGroupExecutionSpec
 
setEquals(ArrayList<TemplateEqualSpec>) - Method in class eu.transformproject.provenance.representation.OPMGraphInstantiationSpec
 
setErrorLogWriter(PrintWriter) - Method in class eu.transformproject.provenance.utils.DBScriptRunner
Setter for errorLogWriter property
setExecDescs(ArrayList<TemplateGroupExecutionSpec>) - Method in class eu.transformproject.provenance.representation.OPMGraphTemplate
 
setFile(String) - Method in class eu.transformproject.provenance.representation.TemplateDeploySpec
 
setGraph(OPMGraph) - Method in class eu.transformproject.provenance.representation.OPMGraphTemplate
 
setGraph(OPMGraph) - Method in class eu.transformproject.provenance.representation.TemplateGroupExecutionSpec
 
setGroupDeploys(ArrayList<TemplateGroupDeploySpec>) - Method in class eu.transformproject.provenance.representation.TemplateDeploySpec
 
setId(String, String, String) - Method in class eu.transformproject.provenance.representation.OPMGraphIterativeInstantiation
 
setId(String, String) - Method in class eu.transformproject.provenance.representation.OPMGraphIterativeInstantiation
 
setId(String) - Method in class eu.transformproject.provenance.representation.OPMGraphTemplate
 
setId(String) - Method in class eu.transformproject.provenance.representation.TemplateDeploySpec
 
setId(String) - Method in class eu.transformproject.provenance.representation.TemplateGroupDeploySpec
 
setId(String) - Method in class eu.transformproject.provenance.representation.TemplateGroupExecutionSpec
 
setId(String) - Method in class eu.transformproject.provenance.representation.TemplateNodeDeploySpec
 
setId(String, String) - Method in class eu.transformproject.provenance.service.ProvenanceServer
 
setId(String, String) - Method in class eu.transformproject.provenance.storage.ProvenancePersistenceManager
 
setIdInfile(String) - Method in class eu.transformproject.provenance.representation.TemplateDeploySpec
 
setIs_a(String) - Method in class eu.transformproject.provenance.representation.TemplateNodeDeploySpec
 
setIs_uniqueValue(boolean) - Method in class eu.transformproject.provenance.representation.TemplateNodeDeploySpec
 
setLastTemplateAsCurr(String) - Method in class eu.transformproject.provenance.representation.OPMGraphIterativeInstantiation
 
setLinks(ArrayList<TemplateLinkSpec>) - Method in class eu.transformproject.provenance.representation.OPMGraphInstantiationSpec
 
setLogWriter(PrintWriter) - Method in class eu.transformproject.provenance.utils.DBScriptRunner
Setter for logWriter property
setMaxCard(int) - Method in class eu.transformproject.provenance.representation.TemplateGroupExecutionSpec
 
setMaxEquals(int) - Method in class eu.transformproject.provenance.representation.TemplateEqualSpec
 
setMinCard(int) - Method in class eu.transformproject.provenance.representation.TemplateGroupExecutionSpec
 
setName(String) - Method in class eu.transformproject.provenance.service.ProvenanceStore
 
setNewDeploymentDesc(String) - Method in class eu.transformproject.provenance.representation.InstantiationDesc
 
setNewDeploymentDesc(InstantiationDesc) - Method in class eu.transformproject.provenance.representation.TemplateDeploySpec
 
setNewInstantiationDesc() - Method in class eu.transformproject.provenance.representation.OPMGraphInstantiationSpec
 
setNodeDeploys(ArrayList<TemplateNodeDeploySpec>) - Method in class eu.transformproject.provenance.representation.TemplateDeploySpec
 
setNodeId1(String) - Method in class eu.transformproject.provenance.representation.TemplateEqualSpec
 
setNodeId2(String) - Method in class eu.transformproject.provenance.representation.TemplateEqualSpec
 
setNodeIdCause(String) - Method in class eu.transformproject.provenance.representation.TemplateLinkSpec
 
setNodeIdEffect(String) - Method in class eu.transformproject.provenance.representation.TemplateLinkSpec
 
setNodesInGroup(ArrayList<OPMEntityNode>) - Method in class eu.transformproject.provenance.representation.TemplateGroupExecutionSpec
 
setNumberOfDeployments(int) - Method in class eu.transformproject.provenance.representation.TemplateDeploySpec
 
setNumberOfDeployments(int) - Method in class eu.transformproject.provenance.representation.TemplateGroupDeploySpec
 
setNumberOfLinks(int) - Method in class eu.transformproject.provenance.representation.TemplateLinkSpec
 
setObservedPaths(ArrayList<ObservedPath>) - Method in class eu.transformproject.provenance.representation.OPMGraphInstantiationSpec
 
setOntologies(Ontologies) - Method in class eu.transformproject.provenance.storage.ProvenancePersistenceManager
 
setOntology(Ontology) - Method in class eu.transformproject.provenance.opm.Property
 
setOntologyId(String) - Method in class eu.transformproject.provenance.opm.Ontology
 
setOntologyKey(Long) - Method in class eu.transformproject.provenance.opm.Ontology
 
setOntologyName(String) - Method in class eu.transformproject.provenance.opm.Ontology
 
setOntologyVersion(String) - Method in class eu.transformproject.provenance.opm.Ontology
 
setOntos(Ontologies) - Method in class eu.transformproject.provenance.representation.OPMGraphXMLReader
 
setOpmaccountCreationTime(Date) - Method in class eu.transformproject.provenance.opm.OPMAccount
 
setOpmaccountDescription(String) - Method in class eu.transformproject.provenance.opm.OPMAccount
 
setOpmaccounts(Set<OPMAccount>) - Method in class eu.transformproject.provenance.opm.OPMEntity
 
setOpmagentCreationTime(Date) - Method in class eu.transformproject.provenance.opm.OPMAgent
 
setOpmannotations(Set<OPMAnnotation>) - Method in class eu.transformproject.provenance.opm.OPMEntity
 
setOpmannotations(Set<OPMAnnotation>) - Method in class eu.transformproject.provenance.opm.Property
 
setOpmartifactCreationTime(Date) - Method in class eu.transformproject.provenance.opm.OPMArtifact
 
setOpmdependenceCreationTime(Date) - Method in class eu.transformproject.provenance.opm.OPMDependence
 
setOpmdependences(Set<OPMDependence>) - Method in class eu.transformproject.provenance.opm.OPMDependenceType
 
setOpmdependencesForOpmdependenceCause(Set<OPMDependence>) - Method in class eu.transformproject.provenance.opm.OPMEntityNode
 
setOpmdependencesForOpmdependenceEffect(Set<OPMDependence>) - Method in class eu.transformproject.provenance.opm.OPMEntityNode
 
setOpmdependenceType(OPMDependenceType) - Method in class eu.transformproject.provenance.opm.OPMDependence
 
setOpmdependenceTypeDescription(String) - Method in class eu.transformproject.provenance.opm.OPMDependenceType
 
setOpmdependenceTypeKey(Long) - Method in class eu.transformproject.provenance.opm.OPMDependenceType
 
setOpmdependenceTypeName(String) - Method in class eu.transformproject.provenance.opm.OPMDependenceType
 
setOpmentities(Set<OPMEntity>) - Method in class eu.transformproject.provenance.opm.OPMAccount
 
setOpmentities(Set<OPMEntity>) - Method in class eu.transformproject.provenance.opm.OPMEntityType
 
setOpmentities(Set<OPMEntity>) - Method in class eu.transformproject.provenance.opm.OPMGraph
 
setOpmentityAnnotationTime(Date) - Method in class eu.transformproject.provenance.opm.OPMEntity
 
setOpmentityId(String) - Method in class eu.transformproject.provenance.opm.OPMEntity
 
setOpmentityKey(Long) - Method in class eu.transformproject.provenance.opm.OPMEntity
 
setOpmentityType(OPMEntityType) - Method in class eu.transformproject.provenance.opm.OPMEntity
 
setOpmentityTypeKey(Long) - Method in class eu.transformproject.provenance.opm.OPMEntityType
 
setOpmentityTypeName(String) - Method in class eu.transformproject.provenance.opm.OPMEntityType
 
setOpmentityValue(String) - Method in class eu.transformproject.provenance.opm.OPMEntity
 
setOpmgraph(OPMGraph) - Method in class eu.transformproject.provenance.opm.OPMEntity
 
setOpmgraphCreationTime(Date) - Method in class eu.transformproject.provenance.opm.OPMGraph
 
setOpmgraphDescription(String) - Method in class eu.transformproject.provenance.opm.OPMGraph
 
setOpmOnto(Ontologies) - Method in class eu.transformproject.provenance.service.ProvenanceStore
 
setOpmprocessDescription(String) - Method in class eu.transformproject.provenance.opm.OPMProcess
Sets the opmprocess description.
setOpmprocessEndTime(Date) - Method in class eu.transformproject.provenance.opm.OPMProcess
 
setOpmprocesses(Set<OPMProcess>) - Method in class eu.transformproject.provenance.opm.ProcessStatus
 
setOpmprocessStartTime(Date) - Method in class eu.transformproject.provenance.opm.OPMProcess
 
setOpmSubjectEntity(OPMEntity) - Method in class eu.transformproject.provenance.opm.OPMAnnotation
 
setOwlURIbase(String) - Method in class eu.transformproject.provenance.service.ProvenanceStore
 
setPassword(String) - Method in class eu.transformproject.provenance.service.ProvenanceStore
 
setProcess(String, String, HashMap<String, Object>, Date, Date) - Method in class eu.transformproject.provenance.representation.OPMGraphIterativeInstantiation
 
setProcess(String, String, HashMap<String, Object>) - Method in class eu.transformproject.provenance.representation.OPMGraphIterativeInstantiation
 
setProcess(String, String) - Method in class eu.transformproject.provenance.representation.OPMGraphIterativeInstantiation
 
setProcess(String) - Method in class eu.transformproject.provenance.representation.OPMGraphIterativeInstantiation
 
setProcess(String, HashMap<String, Object>, Date, Date) - Method in class eu.transformproject.provenance.representation.OPMGraphIterativeInstantiation
 
setProcessEnd(String, String, Date) - Method in class eu.transformproject.provenance.representation.OPMGraphIterativeInstantiation
 
setProcessEnd(String, Date) - Method in class eu.transformproject.provenance.representation.OPMGraphIterativeInstantiation
 
setProcessEndAt(String, Date) - Method in class eu.transformproject.provenance.service.ProvenanceServer
 
setProcessEndAt(String, Date) - Method in interface eu.transformproject.provenance.service.ProvenanceStorageInterface
 
setProcessEndAt(String, Date) - Method in class eu.transformproject.provenance.storage.ProvenancePersistenceManager
 
setProcessEndNow(String, String, HashMap<String, Object>, Date) - Method in class eu.transformproject.provenance.representation.OPMGraphIterativeInstantiation
 
setProcessEndNow(String, String) - Method in class eu.transformproject.provenance.representation.OPMGraphIterativeInstantiation
 
setProcessEndNow(String, String, Date) - Method in class eu.transformproject.provenance.representation.OPMGraphIterativeInstantiation
 
setProcessEndNow(String, Date) - Method in class eu.transformproject.provenance.representation.OPMGraphIterativeInstantiation
 
setProcessEndNow(String, HashMap<String, Object>) - Method in class eu.transformproject.provenance.representation.OPMGraphIterativeInstantiation
 
setProcessEndNow(String, HashMap<String, Object>, Date) - Method in class eu.transformproject.provenance.representation.OPMGraphIterativeInstantiation
 
setProcessEndNow(String) - Method in class eu.transformproject.provenance.representation.OPMGraphIterativeInstantiation
 
setProcessStartAt(String, String, Date) - Method in class eu.transformproject.provenance.representation.OPMGraphIterativeInstantiation
 
setProcessStartAt(String, Date) - Method in class eu.transformproject.provenance.representation.OPMGraphIterativeInstantiation
 
setProcessStartAt(String, Date) - Method in class eu.transformproject.provenance.service.ProvenanceServer
 
setProcessStartAt(String, Date) - Method in interface eu.transformproject.provenance.service.ProvenanceStorageInterface
 
setProcessStartAt(String, Date) - Method in class eu.transformproject.provenance.storage.ProvenancePersistenceManager
 
setProcessStartNow(String, String, HashMap<String, Object>) - Method in class eu.transformproject.provenance.representation.OPMGraphIterativeInstantiation
 
setProcessStartNow(String, HashMap<String, Object>) - Method in class eu.transformproject.provenance.representation.OPMGraphIterativeInstantiation
 
setProcessStatus(ProcessStatus) - Method in class eu.transformproject.provenance.opm.OPMProcess
 
setProcessStatus(String, String) - Method in class eu.transformproject.provenance.representation.OPMGraphIterativeInstantiation
 
setProcessStatus(String, String, String) - Method in class eu.transformproject.provenance.representation.OPMGraphIterativeInstantiation
 
setProcessStatus(String, String) - Method in class eu.transformproject.provenance.service.ProvenanceServer
 
setProcessStatus(String, String) - Method in interface eu.transformproject.provenance.service.ProvenanceStorageInterface
Allows to set the status of a process.
setProcessStatus(String, String) - Method in class eu.transformproject.provenance.storage.ProvenancePersistenceManager
 
setProcessStatusDescription(String) - Method in class eu.transformproject.provenance.opm.ProcessStatus
 
setProcessStatusKey(Long) - Method in class eu.transformproject.provenance.opm.ProcessStatus
 
setProcessStatusName(String) - Method in class eu.transformproject.provenance.opm.ProcessStatus
 
setProperties(Set<Property>) - Method in class eu.transformproject.provenance.opm.Ontology
 
setProperty(Property) - Method in class eu.transformproject.provenance.opm.OPMAnnotation
 
setPropertyId(String) - Method in class eu.transformproject.provenance.opm.Property
 
setPropertyKey(Long) - Method in class eu.transformproject.provenance.opm.Property
 
setPropertyValue(String) - Method in class eu.transformproject.provenance.opm.OPMAnnotation
 
setProvDir(String) - Method in class eu.transformproject.provenance.service.ProvenanceStore
 
setprovServer(ProvenanceServer) - Method in class eu.transformproject.provenance.reasoning.inProvStore.UpdatableOntoInProvStore
 
setProvServerName(String) - Method in class eu.transformproject.provenance.service.ProvenanceStore
 
setProvServerType(String) - Method in class eu.transformproject.provenance.service.ProvenanceStore
 
setProvServerURL(String) - Method in class eu.transformproject.provenance.service.ProvenanceStore
 
setShortName(String) - Method in class eu.transformproject.provenance.service.ProvenanceStore
 
setSortedNodeIds(ArrayList<String>) - Method in class eu.transformproject.provenance.representation.ObservedPath
 
setTemplateDeploys(ArrayList<TemplateDeploySpec>) - Method in class eu.transformproject.provenance.representation.OPMGraphInstantiationSpec
 
setTemplateId1(String) - Method in class eu.transformproject.provenance.representation.TemplateEqualSpec
 
setTemplateId2(String) - Method in class eu.transformproject.provenance.representation.TemplateEqualSpec
 
setTemplateIdCause(String) - Method in class eu.transformproject.provenance.representation.TemplateLinkSpec
 
setTemplateIdEffect(String) - Method in class eu.transformproject.provenance.representation.TemplateLinkSpec
 
setTimeserver(String) - Method in class eu.transformproject.provenance.service.ProvenanceStore
 
setType(String) - Method in class eu.transformproject.provenance.representation.TemplateGroupExecutionSpec
 
setUserName(String) - Method in class eu.transformproject.provenance.service.ProvenanceStore
 
SHORT_NAME_ATTR - Static variable in interface eu.transformproject.provenance.service.ProvenanceConfigInterface
 
showGraph(OPMGraph) - Method in class eu.transformproject.provenance.service.ProvenanceServer
 
simpleClone(OPMEntity, boolean) - Static method in class eu.transformproject.provenance.opm.factory.OPMFactory
Simple clone.
simpleClone(OPMEntity) - Static method in class eu.transformproject.provenance.opm.factory.OPMFactory
 
startPackageData(String, Date) - Method in interface eu.transformproject.provenance.representation.commonItInstantiation.CommomInstantiationInterface
Starts of the packaging processing.
startPackageData(String, Date) - Method in class eu.transformproject.provenance.representation.commonItInstantiation.CommonInstantiation
 
startPackageData(String, Date) - Method in class eu.transformproject.provenance.ws.ProvenanceWS_DataConnectorTool
 
startPackageData(String, Date) - Method in class eu.transformproject.provenance.ws.ProvenanceWS_MiddlewareTool
 
startPackageData(String, Date) - Method in class eu.transformproject.provenance.ws.ProvenanceWS_QueryTool
 
submitDataExtractionQuery(String, String, String, Object, Date) - Method in class eu.transformproject.provenance.ws.ProvenanceWS_QueryTool
 
submitDataExtractionQuery(String, String, String, Object, Date) - Method in interface eu.transformproject.provenance.ws.ProvenanceWS_QueryTool_Interface
submitDataExtractionQuery.
submitFlaggedPatientSet(String, Object, Date) - Method in class eu.transformproject.provenance.ws.ProvenanceWS_QueryTool
 
submitFlaggedPatientSet(String, Object, Date) - Method in interface eu.transformproject.provenance.ws.ProvenanceWS_QueryTool_Interface
submitFlaggedPatientSet.
submitPatientCountQuery(String, Object, Date) - Method in class eu.transformproject.provenance.ws.ProvenanceWS_QueryTool
 
submitPatientCountQuery(String, Object, Date) - Method in interface eu.transformproject.provenance.ws.ProvenanceWS_QueryTool_Interface
submitPatientCountQuery.
subsumptionValidation() - Method in class eu.transformproject.provenance.reasoning.ProvenanceReasoning
 
SVGWriter - Class in eu.transformproject.provenance.utils
 
SVGWriter() - Constructor for class eu.transformproject.provenance.utils.SVGWriter
 
SVGWriter_old - Class in eu.transformproject.provenance.utils
 
SVGWriter_old() - Constructor for class eu.transformproject.provenance.utils.SVGWriter_old
 
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