- saveConfig() - Method in class eu.transformproject.provenance.service.ProvenanceStore
-
- saveD2RQ() - Method in class eu.transformproject.provenance.service.ProvenanceStore
-
- saveDBScript() - Method in class eu.transformproject.provenance.service.ProvenanceStore
-
- saveQuery(String, Date, Date) - Method in class eu.transformproject.provenance.ws.ProvenanceWS_DataQualityTool
-
- saveQuery(String, Date, Date) - Method in interface eu.transformproject.provenance.ws.ProvenanceWS_DataQualityTool_Interface
-
saveQuery.
- saveQueryResult(String, Date, Date) - Method in class eu.transformproject.provenance.ws.ProvenanceWS_DataQualityTool
-
- saveQueryResult(String, Date, Date) - Method in interface eu.transformproject.provenance.ws.ProvenanceWS_DataQualityTool_Interface
-
saveQueryResult.
- sendData(String, String) - Method in interface eu.transformproject.provenance.representation.commonItInstantiation.CommomInstantiationInterface
-
Send an encrypted data.
- sendData(String, String) - Method in class eu.transformproject.provenance.representation.commonItInstantiation.CommonInstantiation
-
- sendData(String, String) - Method in class eu.transformproject.provenance.ws.ProvenanceWS_DataConnectorTool
-
- sendData(String, String) - Method in class eu.transformproject.provenance.ws.ProvenanceWS_MiddlewareTool
-
- sendData(String, String) - Method in class eu.transformproject.provenance.ws.ProvenanceWS_QueryTool
-
- SERIE_GROUP - Static variable in class eu.transformproject.provenance.representation.TemplateGroupExecutionSpec
-
- server - Variable in class eu.transformproject.provenance.representation.commonItInstantiation.CommonInstantiation
-
- set(String, int, String, Object) - Method in class eu.transformproject.provenance.representation.OPMGraphIterativeInstantiation
-
- set(String, String, Object) - Method in class eu.transformproject.provenance.representation.OPMGraphIterativeInstantiation
-
- set(String, Object) - Method in class eu.transformproject.provenance.representation.OPMGraphIterativeInstantiation
-
- setAnnotations(String, String, AnnotationSet) - Method in class eu.transformproject.provenance.representation.OPMGraphIterativeInstantiation
-
- setAnnotations(String, AnnotationSet) - Method in class eu.transformproject.provenance.representation.OPMGraphIterativeInstantiation
-
- setCause(OPMEntityNode) - Method in class eu.transformproject.provenance.opm.OPMDependence
-
- setCurrentGraph(String) - Method in class eu.transformproject.provenance.service.ProvenanceServer
-
- setCurrentGraph(String) - Method in interface eu.transformproject.provenance.service.ProvenanceStorageInterface
-
Specify that all the new entity definitions belong to the OPM graph with URI idGraph.
- setCurrentGraph(String) - Method in class eu.transformproject.provenance.storage.ProvenancePersistenceManager
-
- setCurrGroup(String, String) - Method in class eu.transformproject.provenance.representation.OPMGraphIterativeInstantiation
-
- setCurrGroup(String, String, int) - Method in class eu.transformproject.provenance.representation.OPMGraphIterativeInstantiation
-
- setCurrTemplateInstantiation(String, int) - Method in class eu.transformproject.provenance.representation.OPMGraphIterativeInstantiation
-
- setDbServerUrl(String) - Method in class eu.transformproject.provenance.service.ProvenanceStore
-
- setDelimiter(String, boolean) - Method in class eu.transformproject.provenance.utils.DBScriptRunner
-
- setDependence(OPMDependence) - Method in class eu.transformproject.provenance.representation.LinkDeploymentDesc
-
Sets the dependence.
- setDeployment1(TemplateDeploymentDesc) - Method in class eu.transformproject.provenance.representation.EqualDeploymentDesc
-
- setDeployment2(TemplateDeploymentDesc) - Method in class eu.transformproject.provenance.representation.EqualDeploymentDesc
-
- setDeploymentCause(TemplateDeploymentDesc) - Method in class eu.transformproject.provenance.representation.LinkDeploymentDesc
-
Sets the deployment cause.
- setDeploymentEffect(TemplateDeploymentDesc) - Method in class eu.transformproject.provenance.representation.LinkDeploymentDesc
-
Sets the deployment effect.
- setDescr(String) - Method in class eu.transformproject.provenance.service.ProvenanceStore
-
- setEffect(OPMEntityNode) - Method in class eu.transformproject.provenance.opm.OPMDependence
-
- setEntity(OPMEntityNode) - Method in class eu.transformproject.provenance.representation.EqualDeploymentDesc
-
- setEqualInPrevIteration(OPMEntityNode, OPMEntityNode) - Method in class eu.transformproject.provenance.representation.TemplateGroupExecutionSpec
-
- setEquals(ArrayList<TemplateEqualSpec>) - Method in class eu.transformproject.provenance.representation.OPMGraphInstantiationSpec
-
- setErrorLogWriter(PrintWriter) - Method in class eu.transformproject.provenance.utils.DBScriptRunner
-
Setter for errorLogWriter property
- setExecDescs(ArrayList<TemplateGroupExecutionSpec>) - Method in class eu.transformproject.provenance.representation.OPMGraphTemplate
-
- setFile(String) - Method in class eu.transformproject.provenance.representation.TemplateDeploySpec
-
- setGraph(OPMGraph) - Method in class eu.transformproject.provenance.representation.OPMGraphTemplate
-
- setGraph(OPMGraph) - Method in class eu.transformproject.provenance.representation.TemplateGroupExecutionSpec
-
- setGroupDeploys(ArrayList<TemplateGroupDeploySpec>) - Method in class eu.transformproject.provenance.representation.TemplateDeploySpec
-
- setId(String, String, String) - Method in class eu.transformproject.provenance.representation.OPMGraphIterativeInstantiation
-
- setId(String, String) - Method in class eu.transformproject.provenance.representation.OPMGraphIterativeInstantiation
-
- setId(String) - Method in class eu.transformproject.provenance.representation.OPMGraphTemplate
-
- setId(String) - Method in class eu.transformproject.provenance.representation.TemplateDeploySpec
-
- setId(String) - Method in class eu.transformproject.provenance.representation.TemplateGroupDeploySpec
-
- setId(String) - Method in class eu.transformproject.provenance.representation.TemplateGroupExecutionSpec
-
- setId(String) - Method in class eu.transformproject.provenance.representation.TemplateNodeDeploySpec
-
- setId(String, String) - Method in class eu.transformproject.provenance.service.ProvenanceServer
-
- setId(String, String) - Method in class eu.transformproject.provenance.storage.ProvenancePersistenceManager
-
- setIdInfile(String) - Method in class eu.transformproject.provenance.representation.TemplateDeploySpec
-
- setIs_a(String) - Method in class eu.transformproject.provenance.representation.TemplateNodeDeploySpec
-
- setIs_uniqueValue(boolean) - Method in class eu.transformproject.provenance.representation.TemplateNodeDeploySpec
-
- setLastTemplateAsCurr(String) - Method in class eu.transformproject.provenance.representation.OPMGraphIterativeInstantiation
-
- setLinks(ArrayList<TemplateLinkSpec>) - Method in class eu.transformproject.provenance.representation.OPMGraphInstantiationSpec
-
- setLogWriter(PrintWriter) - Method in class eu.transformproject.provenance.utils.DBScriptRunner
-
Setter for logWriter property
- setMaxCard(int) - Method in class eu.transformproject.provenance.representation.TemplateGroupExecutionSpec
-
- setMaxEquals(int) - Method in class eu.transformproject.provenance.representation.TemplateEqualSpec
-
- setMinCard(int) - Method in class eu.transformproject.provenance.representation.TemplateGroupExecutionSpec
-
- setName(String) - Method in class eu.transformproject.provenance.service.ProvenanceStore
-
- setNewDeploymentDesc(String) - Method in class eu.transformproject.provenance.representation.InstantiationDesc
-
- setNewDeploymentDesc(InstantiationDesc) - Method in class eu.transformproject.provenance.representation.TemplateDeploySpec
-
- setNewInstantiationDesc() - Method in class eu.transformproject.provenance.representation.OPMGraphInstantiationSpec
-
- setNodeDeploys(ArrayList<TemplateNodeDeploySpec>) - Method in class eu.transformproject.provenance.representation.TemplateDeploySpec
-
- setNodeId1(String) - Method in class eu.transformproject.provenance.representation.TemplateEqualSpec
-
- setNodeId2(String) - Method in class eu.transformproject.provenance.representation.TemplateEqualSpec
-
- setNodeIdCause(String) - Method in class eu.transformproject.provenance.representation.TemplateLinkSpec
-
- setNodeIdEffect(String) - Method in class eu.transformproject.provenance.representation.TemplateLinkSpec
-
- setNodesInGroup(ArrayList<OPMEntityNode>) - Method in class eu.transformproject.provenance.representation.TemplateGroupExecutionSpec
-
- setNumberOfDeployments(int) - Method in class eu.transformproject.provenance.representation.TemplateDeploySpec
-
- setNumberOfDeployments(int) - Method in class eu.transformproject.provenance.representation.TemplateGroupDeploySpec
-
- setNumberOfLinks(int) - Method in class eu.transformproject.provenance.representation.TemplateLinkSpec
-
- setObservedPaths(ArrayList<ObservedPath>) - Method in class eu.transformproject.provenance.representation.OPMGraphInstantiationSpec
-
- setOntologies(Ontologies) - Method in class eu.transformproject.provenance.storage.ProvenancePersistenceManager
-
- setOntology(Ontology) - Method in class eu.transformproject.provenance.opm.Property
-
- setOntologyId(String) - Method in class eu.transformproject.provenance.opm.Ontology
-
- setOntologyKey(Long) - Method in class eu.transformproject.provenance.opm.Ontology
-
- setOntologyName(String) - Method in class eu.transformproject.provenance.opm.Ontology
-
- setOntologyVersion(String) - Method in class eu.transformproject.provenance.opm.Ontology
-
- setOntos(Ontologies) - Method in class eu.transformproject.provenance.representation.OPMGraphXMLReader
-
- setOpmaccountCreationTime(Date) - Method in class eu.transformproject.provenance.opm.OPMAccount
-
- setOpmaccountDescription(String) - Method in class eu.transformproject.provenance.opm.OPMAccount
-
- setOpmaccounts(Set<OPMAccount>) - Method in class eu.transformproject.provenance.opm.OPMEntity
-
- setOpmagentCreationTime(Date) - Method in class eu.transformproject.provenance.opm.OPMAgent
-
- setOpmannotations(Set<OPMAnnotation>) - Method in class eu.transformproject.provenance.opm.OPMEntity
-
- setOpmannotations(Set<OPMAnnotation>) - Method in class eu.transformproject.provenance.opm.Property
-
- setOpmartifactCreationTime(Date) - Method in class eu.transformproject.provenance.opm.OPMArtifact
-
- setOpmdependenceCreationTime(Date) - Method in class eu.transformproject.provenance.opm.OPMDependence
-
- setOpmdependences(Set<OPMDependence>) - Method in class eu.transformproject.provenance.opm.OPMDependenceType
-
- setOpmdependencesForOpmdependenceCause(Set<OPMDependence>) - Method in class eu.transformproject.provenance.opm.OPMEntityNode
-
- setOpmdependencesForOpmdependenceEffect(Set<OPMDependence>) - Method in class eu.transformproject.provenance.opm.OPMEntityNode
-
- setOpmdependenceType(OPMDependenceType) - Method in class eu.transformproject.provenance.opm.OPMDependence
-
- setOpmdependenceTypeDescription(String) - Method in class eu.transformproject.provenance.opm.OPMDependenceType
-
- setOpmdependenceTypeKey(Long) - Method in class eu.transformproject.provenance.opm.OPMDependenceType
-
- setOpmdependenceTypeName(String) - Method in class eu.transformproject.provenance.opm.OPMDependenceType
-
- setOpmentities(Set<OPMEntity>) - Method in class eu.transformproject.provenance.opm.OPMAccount
-
- setOpmentities(Set<OPMEntity>) - Method in class eu.transformproject.provenance.opm.OPMEntityType
-
- setOpmentities(Set<OPMEntity>) - Method in class eu.transformproject.provenance.opm.OPMGraph
-
- setOpmentityAnnotationTime(Date) - Method in class eu.transformproject.provenance.opm.OPMEntity
-
- setOpmentityId(String) - Method in class eu.transformproject.provenance.opm.OPMEntity
-
- setOpmentityKey(Long) - Method in class eu.transformproject.provenance.opm.OPMEntity
-
- setOpmentityType(OPMEntityType) - Method in class eu.transformproject.provenance.opm.OPMEntity
-
- setOpmentityTypeKey(Long) - Method in class eu.transformproject.provenance.opm.OPMEntityType
-
- setOpmentityTypeName(String) - Method in class eu.transformproject.provenance.opm.OPMEntityType
-
- setOpmentityValue(String) - Method in class eu.transformproject.provenance.opm.OPMEntity
-
- setOpmgraph(OPMGraph) - Method in class eu.transformproject.provenance.opm.OPMEntity
-
- setOpmgraphCreationTime(Date) - Method in class eu.transformproject.provenance.opm.OPMGraph
-
- setOpmgraphDescription(String) - Method in class eu.transformproject.provenance.opm.OPMGraph
-
- setOpmOnto(Ontologies) - Method in class eu.transformproject.provenance.service.ProvenanceStore
-
- setOpmprocessDescription(String) - Method in class eu.transformproject.provenance.opm.OPMProcess
-
Sets the opmprocess description.
- setOpmprocessEndTime(Date) - Method in class eu.transformproject.provenance.opm.OPMProcess
-
- setOpmprocesses(Set<OPMProcess>) - Method in class eu.transformproject.provenance.opm.ProcessStatus
-
- setOpmprocessStartTime(Date) - Method in class eu.transformproject.provenance.opm.OPMProcess
-
- setOpmSubjectEntity(OPMEntity) - Method in class eu.transformproject.provenance.opm.OPMAnnotation
-
- setOwlURIbase(String) - Method in class eu.transformproject.provenance.service.ProvenanceStore
-
- setPassword(String) - Method in class eu.transformproject.provenance.service.ProvenanceStore
-
- setProcess(String, String, HashMap<String, Object>, Date, Date) - Method in class eu.transformproject.provenance.representation.OPMGraphIterativeInstantiation
-
- setProcess(String, String, HashMap<String, Object>) - Method in class eu.transformproject.provenance.representation.OPMGraphIterativeInstantiation
-
- setProcess(String, String) - Method in class eu.transformproject.provenance.representation.OPMGraphIterativeInstantiation
-
- setProcess(String) - Method in class eu.transformproject.provenance.representation.OPMGraphIterativeInstantiation
-
- setProcess(String, HashMap<String, Object>, Date, Date) - Method in class eu.transformproject.provenance.representation.OPMGraphIterativeInstantiation
-
- setProcessEnd(String, String, Date) - Method in class eu.transformproject.provenance.representation.OPMGraphIterativeInstantiation
-
- setProcessEnd(String, Date) - Method in class eu.transformproject.provenance.representation.OPMGraphIterativeInstantiation
-
- setProcessEndAt(String, Date) - Method in class eu.transformproject.provenance.service.ProvenanceServer
-
- setProcessEndAt(String, Date) - Method in interface eu.transformproject.provenance.service.ProvenanceStorageInterface
-
- setProcessEndAt(String, Date) - Method in class eu.transformproject.provenance.storage.ProvenancePersistenceManager
-
- setProcessEndNow(String, String, HashMap<String, Object>, Date) - Method in class eu.transformproject.provenance.representation.OPMGraphIterativeInstantiation
-
- setProcessEndNow(String, String) - Method in class eu.transformproject.provenance.representation.OPMGraphIterativeInstantiation
-
- setProcessEndNow(String, String, Date) - Method in class eu.transformproject.provenance.representation.OPMGraphIterativeInstantiation
-
- setProcessEndNow(String, Date) - Method in class eu.transformproject.provenance.representation.OPMGraphIterativeInstantiation
-
- setProcessEndNow(String, HashMap<String, Object>) - Method in class eu.transformproject.provenance.representation.OPMGraphIterativeInstantiation
-
- setProcessEndNow(String, HashMap<String, Object>, Date) - Method in class eu.transformproject.provenance.representation.OPMGraphIterativeInstantiation
-
- setProcessEndNow(String) - Method in class eu.transformproject.provenance.representation.OPMGraphIterativeInstantiation
-
- setProcessStartAt(String, String, Date) - Method in class eu.transformproject.provenance.representation.OPMGraphIterativeInstantiation
-
- setProcessStartAt(String, Date) - Method in class eu.transformproject.provenance.representation.OPMGraphIterativeInstantiation
-
- setProcessStartAt(String, Date) - Method in class eu.transformproject.provenance.service.ProvenanceServer
-
- setProcessStartAt(String, Date) - Method in interface eu.transformproject.provenance.service.ProvenanceStorageInterface
-
- setProcessStartAt(String, Date) - Method in class eu.transformproject.provenance.storage.ProvenancePersistenceManager
-
- setProcessStartNow(String, String, HashMap<String, Object>) - Method in class eu.transformproject.provenance.representation.OPMGraphIterativeInstantiation
-
- setProcessStartNow(String, HashMap<String, Object>) - Method in class eu.transformproject.provenance.representation.OPMGraphIterativeInstantiation
-
- setProcessStatus(ProcessStatus) - Method in class eu.transformproject.provenance.opm.OPMProcess
-
- setProcessStatus(String, String) - Method in class eu.transformproject.provenance.representation.OPMGraphIterativeInstantiation
-
- setProcessStatus(String, String, String) - Method in class eu.transformproject.provenance.representation.OPMGraphIterativeInstantiation
-
- setProcessStatus(String, String) - Method in class eu.transformproject.provenance.service.ProvenanceServer
-
- setProcessStatus(String, String) - Method in interface eu.transformproject.provenance.service.ProvenanceStorageInterface
-
Allows to set the status of a process.
- setProcessStatus(String, String) - Method in class eu.transformproject.provenance.storage.ProvenancePersistenceManager
-
- setProcessStatusDescription(String) - Method in class eu.transformproject.provenance.opm.ProcessStatus
-
- setProcessStatusKey(Long) - Method in class eu.transformproject.provenance.opm.ProcessStatus
-
- setProcessStatusName(String) - Method in class eu.transformproject.provenance.opm.ProcessStatus
-
- setProperties(Set<Property>) - Method in class eu.transformproject.provenance.opm.Ontology
-
- setProperty(Property) - Method in class eu.transformproject.provenance.opm.OPMAnnotation
-
- setPropertyId(String) - Method in class eu.transformproject.provenance.opm.Property
-
- setPropertyKey(Long) - Method in class eu.transformproject.provenance.opm.Property
-
- setPropertyValue(String) - Method in class eu.transformproject.provenance.opm.OPMAnnotation
-
- setProvDir(String) - Method in class eu.transformproject.provenance.service.ProvenanceStore
-
- setprovServer(ProvenanceServer) - Method in class eu.transformproject.provenance.reasoning.inProvStore.UpdatableOntoInProvStore
-
- setProvServerName(String) - Method in class eu.transformproject.provenance.service.ProvenanceStore
-
- setProvServerType(String) - Method in class eu.transformproject.provenance.service.ProvenanceStore
-
- setProvServerURL(String) - Method in class eu.transformproject.provenance.service.ProvenanceStore
-
- setShortName(String) - Method in class eu.transformproject.provenance.service.ProvenanceStore
-
- setSortedNodeIds(ArrayList<String>) - Method in class eu.transformproject.provenance.representation.ObservedPath
-
- setTemplateDeploys(ArrayList<TemplateDeploySpec>) - Method in class eu.transformproject.provenance.representation.OPMGraphInstantiationSpec
-
- setTemplateId1(String) - Method in class eu.transformproject.provenance.representation.TemplateEqualSpec
-
- setTemplateId2(String) - Method in class eu.transformproject.provenance.representation.TemplateEqualSpec
-
- setTemplateIdCause(String) - Method in class eu.transformproject.provenance.representation.TemplateLinkSpec
-
- setTemplateIdEffect(String) - Method in class eu.transformproject.provenance.representation.TemplateLinkSpec
-
- setTimeserver(String) - Method in class eu.transformproject.provenance.service.ProvenanceStore
-
- setType(String) - Method in class eu.transformproject.provenance.representation.TemplateGroupExecutionSpec
-
- setUserName(String) - Method in class eu.transformproject.provenance.service.ProvenanceStore
-
- SHORT_NAME_ATTR - Static variable in interface eu.transformproject.provenance.service.ProvenanceConfigInterface
-
- showGraph(OPMGraph) - Method in class eu.transformproject.provenance.service.ProvenanceServer
-
- simpleClone(OPMEntity, boolean) - Static method in class eu.transformproject.provenance.opm.factory.OPMFactory
-
Simple clone.
- simpleClone(OPMEntity) - Static method in class eu.transformproject.provenance.opm.factory.OPMFactory
-
- startPackageData(String, Date) - Method in interface eu.transformproject.provenance.representation.commonItInstantiation.CommomInstantiationInterface
-
Starts of the packaging processing.
- startPackageData(String, Date) - Method in class eu.transformproject.provenance.representation.commonItInstantiation.CommonInstantiation
-
- startPackageData(String, Date) - Method in class eu.transformproject.provenance.ws.ProvenanceWS_DataConnectorTool
-
- startPackageData(String, Date) - Method in class eu.transformproject.provenance.ws.ProvenanceWS_MiddlewareTool
-
- startPackageData(String, Date) - Method in class eu.transformproject.provenance.ws.ProvenanceWS_QueryTool
-
- submitDataExtractionQuery(String, String, String, Object, Date) - Method in class eu.transformproject.provenance.ws.ProvenanceWS_QueryTool
-
- submitDataExtractionQuery(String, String, String, Object, Date) - Method in interface eu.transformproject.provenance.ws.ProvenanceWS_QueryTool_Interface
-
submitDataExtractionQuery.
- submitFlaggedPatientSet(String, Object, Date) - Method in class eu.transformproject.provenance.ws.ProvenanceWS_QueryTool
-
- submitFlaggedPatientSet(String, Object, Date) - Method in interface eu.transformproject.provenance.ws.ProvenanceWS_QueryTool_Interface
-
submitFlaggedPatientSet.
- submitPatientCountQuery(String, Object, Date) - Method in class eu.transformproject.provenance.ws.ProvenanceWS_QueryTool
-
- submitPatientCountQuery(String, Object, Date) - Method in interface eu.transformproject.provenance.ws.ProvenanceWS_QueryTool_Interface
-
submitPatientCountQuery.
- subsumptionValidation() - Method in class eu.transformproject.provenance.reasoning.ProvenanceReasoning
-
- SVGWriter - Class in eu.transformproject.provenance.utils
-
- SVGWriter() - Constructor for class eu.transformproject.provenance.utils.SVGWriter
-
- SVGWriter_old - Class in eu.transformproject.provenance.utils
-
- SVGWriter_old() - Constructor for class eu.transformproject.provenance.utils.SVGWriter_old
-