salim.arslan

2018


S. Arslan, S.I. Ktena, A. Makropoulos, E.C. Robinson, D. Rueckert, and S. Parisot, "Human brain mapping: A systematic comparison of brain parcellation methods for the human cerebral cortex," NeuroImage , vol. 170, pp. 5-30, 2018.
[source] [pdf] [data]

2017


S. Parisot, B. Glocker, S.I. Ktena, S. Arslan, M.D. Schirmer, and D. Rueckert, "A flexible graphical model for multi-modal parcellation of the cortex," NeuroImage , vol. 162, pp. 226-248, 2017
[source]

S.I. Ktena, S. Arslan, S. Parisot, and D. Rueckert, "Exploring heritability of functional brain networks with inexact graph matching," IEEE International Symposium on Biomedical Imaging (ISBI), 2017.    --> Oral Presentation <--
[source] [pdf]

2016


S. Arslan, S. Parisot, and D. Rueckert, "Boundary mapping through manifold learning for connectivity-based cortical parcellation," International Conference on Medical Image Computing and Computer Assisted Intervention (MICCAI) , 2016.    --> Travel Award <--
[source] [pdf] [supplementary]

S. Parisot, S. Arslan, J. Passerat-Palmbach, W.M. Wells III, and D. Rueckert, "Group-wise parcellation of the cortex through multi-scale spectral clustering," NeuroImage , vol. 136, pp. 68-83, 2016.
[source] [pdf] [bibtex]

2015


S. Arslan, and D. Rueckert, "Multi-level parcellation of the cerebral cortex using resting-state fMRI," International Conference on Medical Image Computing and Computer Assisted Intervention, vol. 9351 of LNCS. Springer, pp. 47-54, 2015.
[source] [pdf] [poster] [video] [codes]

S. Arslan, S. Parisot, and D. Rueckert, "Joint spectral decomposition for the parcellation of the cerebral cortex using resting-state fMRI," Information Processing in Medical Imaging Lecture Notes in Computer Science, vol. 9123, pp. 85-97, 2015.    --> Oral Presentation <--
[source] [pdf] [slides] [codes]

S. Parisot, S. Arslan, J. Passerat-Palmbach, W.M. Wells III, and D. Rueckert, "Tractography-driven groupwise multi-scale parcellation of the cortex," Information Processing in Medical Imaging Lecture Notes in Computer Science , vol. 9123, pp. 600-612, 2015.
[source] [pdf] [codes]

S. Arslan, S. Parisot, and D. Rueckert, "Comparing connectivity-based groupwise parcellations generated from resting-state fMRI and DTI data: Preliminary results," Symposium on Big Data Initiatives for Connectomics Research, London, 2015.    --> Oral Presentation <--
[slides]

S. I. Ktena, S. Arslan, and D. Rueckert, "Gender classification and manifold learning on functional brain networks," Symposium on Big Data Initiatives for Connectomics Research, London, 2015.    --> Oral Presentation <--
[slides]

S. Arslan, S. Parisot, and D. Rueckert, "Supervertex clustering of the cerebral cortex using resting-state fMRI," Organization for Human Brain Mapping (OHBM), Honolulu, 2015.
[poster] [codes]

S. Arslan, S. Parisot, and D. Rueckert, "How to represent subregions in a parcellated brain for fMRI analysis?," Organization for Human Brain Mapping (OHBM), Honolulu, 2015.
[poster]

2014


S. Arslan, E. Ozyurek, and C. Gunduz-Demir, "A color and shape based algorithm for segmentation of white blood cells in peripheral blood and bone marrow images," Cytometry Part A, vol. 85, no. 6, pp. 480-490, 2014.    --> Featured on the Issue Cover <--
[source] [pdf]

2013


S. Arslan, T. Ersahin, R. Cetin-Atalay, and C. Gunduz-Demir, "Attributed relational graphs for cell nucleus segmentation in fluorescence microscopy images," IEEE Transactions on Medical Imaging, vol. 32, no. 6, pp. 1121-1131, 2013.
[source] [pdf] [codes]

2012


C. F. Koyuncu, S. Arslan, I. Durmaz, R. Cetin-Atalay, and C. Gunduz-Demir, "Smart markers for watershed-based cell segmentation," PLoS ONE, 7(11): e48664, 2012.
[source] [pdf]

S. Arslan, "Perceptual watersheds for cell segmentation in fluorescence microscopy images," M.Sc. Thesis, Department of Computer Engineering, Bilkent University, Ankara, Turkey, August 2012.
[pdf] [talk]

2011


S. Arslan, I. Durmaz, R. Cetin-Atalay, and C. Gunduz-Demir, "Unsupervised segmentation of live cell images using Gaussian modeling," IEEE 19th Signal Processing, Communication, and Applications Conference, Antalya, Turkey, April 2011.    --> Oral Presentation <--
[source] [pdf] [codes]

Technical Reports


S. Arslan et al., "Attributed relational graphs for cell nucleus segmentation in fluorescence microscopy images: Supplementary Material," Technical Report BUCE-1301, Computer Engineering, Bilkent University, 2013.
[source] [pdf]